Citrus Sinensis ID: 029215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccEEEEEcccccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHHcccHHHHHHHcccccEEEEEEcccccccHHHHHcccccccccHHHHHHHHHHHcccEEEEccHHccccHHHHHHHHHHHHcccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHccccccccccccccccEEEc
Coil and Loop (DISEMBL)
msasrfikcvtvgdgavgkTCMLISytsntfptdyvptvfdnfsanvvvdgstvnlglwdtagqedynrlrplsyrgaDVFILAFSLISKASYENVAKKWIPelrhyapgvpiilvgtkldlrddkqffidhpgavpittAQGEELRKligspayiecssKTQQNVKAVFDAAIKVVlqppkqkkkkkkshracsil
Flexible Loop (DISEMBL)
msasrfikcvtvgdgavgkTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKvvlqppkqkkkkkkshracsil
Low Complexity Region (SEG)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLqppkqkkkkkkSHRACSIL
Disordered region (IsUnstruct)
*****FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL*******************
Disordered Region (DISOPRED)
****RFI*CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV**************HRACSIL
Disordered Region (DISEMBL)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP*****************
Disordered Region (DISPRO)
**ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
O04369	197	Rac-like GTP-binding prot	N/A	no	1.0	1.0	0.939	1e-102
Q39435	197	Rac-like GTP-binding prot	N/A	no	1.0	1.0	0.939	1e-100
Q6EP31	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.939	1e-100
Q38937	196	Rac-like GTP-binding prot	yes	no	0.903	0.908	0.977	1e-99
Q38912	198	Rac-like GTP-binding prot	no	no	1.0	0.994	0.893	2e-99
Q6Z7L8	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.852	2e-99
Q35638	197	Rac-like GTP-binding prot	N/A	no	1.0	1.0	0.934	2e-99
Q38902	197	Rac-like GTP-binding prot	no	no	1.0	1.0	0.923	1e-98
P92978	197	Rac-like GTP-binding prot	no	no	1.0	1.0	0.923	1e-98
Q6ZHA3	197	Rac-like GTP-binding prot	no	no	1.0	1.0	0.923	2e-98

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 193/197 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDK F  DHPGAVPITTAQGEELRKLIG+PAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKKKK+++ ++CSIL
Sbjct: 181 PKQKKKKREAQKSCSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Lotus japonicus (taxid: 34305)

>sp|Q39435|RAC1_BETVU Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFIDHPGAVPITTAQGEELRKLIG+PAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PK KKKK K+ +ACSIL
Sbjct: 181 PKTKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Beta vulgaris (taxid: 161934)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPI+TAQGEELRKLIG+ AYIECSSKTQQN+KAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKKKKKK+ + C+IL
Sbjct: 181 PKQKKKKKKAQKGCAIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38937|RAC5_ARATH Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1

 Score =  361 bits (927), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/178 (97%), Positives = 176/178 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQFFIDHPGAVPITT QGEEL+KLIGSP YIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38912|RAC3_ARATH Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1

 Score =  361 bits (926), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/198 (89%), Positives = 193/198 (97%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF +HPGAVPI+TAQGEEL+KLIG+PAYIECS+KTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 P-KQKKKKKKSHRACSIL 197
           P  +KKKK+KS + CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  361 bits (926), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/197 (85%), Positives = 184/197 (93%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKWIPELRHYAP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLR+DKQFF+DHPG  PI+TAQGEEL+++IG+ AYIECSSKTQQNVK+VFD+AIKVVL P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PK KKK  +  R+C IL
Sbjct: 181 PKPKKKNTRKQRSCWIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1

 Score =  361 bits (926), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPITTAQGEELRKLI +PAYIECSSK+QQNVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKKKK K+ +ACSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.

Pisum sativum (taxid: 3888)

>sp|Q38902|RAC1_ARATH Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1

 Score =  358 bits (920), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/197 (92%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFIDHPGAVPITTAQGEEL+KLIG+PAYIECSSKTQ+NVK VFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKKKK K+ +ACSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/197 (92%), Positives = 193/197 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFIDHPGAVPITTAQGEELRK IG+P YIECSSKTQ+NVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKKKK K+ +ACSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  358 bits (918), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/197 (92%), Positives = 188/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPITTAQGEELRK IG+P YIECSSKTQ NVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PK KKKKK    ACSIL
Sbjct: 181 PKAKKKKKAQRGACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
388518421	197	unknown [Lotus japonicus]	1.0	1.0	0.939	1e-107
4586584	197	rac-type small GTP-binding protein [Cice	1.0	1.0	0.923	1e-105
357473803	197	Rac-like GTP-binding protein [Medicago t	1.0	1.0	0.913	1e-104
47600747	197	small GTPase Rac4 [Medicago sativa]	1.0	1.0	0.908	1e-104
388518567	197	unknown [Medicago truncatula]	1.0	1.0	0.908	1e-103
74095369	197	putative Rho GTPase [Medicago sativa sub	1.0	1.0	0.903	1e-103
225428021	198	PREDICTED: rac-like GTP-binding protein	1.0	0.994	0.949	1e-102
317106601	197	JHL20J20.16 [Jatropha curcas]	1.0	1.0	0.939	1e-102
449450502	197	PREDICTED: rac-like GTP-binding protein	1.0	1.0	0.944	1e-101
351721849	196	uncharacterized protein LOC100499696 [Gl	0.994	1.0	0.944	1e-101

>gi|388518421|gb|AFK47272.1| unknown [Lotus japonicus]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLIS+A YEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISRAGYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFI+HPGAVPITTAQGEELRKLIG+PAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFINHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKK K+K+ +ACSIL
Sbjct: 181 PKQKKNKRKAQKACSIL 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4586584|dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arietinum]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/197 (92%), Positives = 191/197 (96%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF DHPGAVPITTAQGEELRKLIG+P YIECSSKTQ+NVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKK K+K  +ACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473803|ref|XP_003607186.1| Rac-like GTP-binding protein [Medicago truncatula] gi|20269983|gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula] gi|355508241|gb|AES89383.1| Rac-like GTP-binding protein [Medicago truncatula]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/197 (91%), Positives = 189/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QFF DHPGA PITTAQGEELRKLIG+P YIECSSKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKK K+K  +ACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47600747|emb|CAG30067.1| small GTPase Rac4 [Medicago sativa]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/197 (90%), Positives = 189/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QFF DHPGA PITTAQGEELRKLIG+P YIECSSKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKK K+K  +ACSI+
Sbjct: 181 PKQKKTKRKGQKACSIM 197

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518567|gb|AFK47345.1| unknown [Medicago truncatula]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/197 (90%), Positives = 188/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QFF DHPGA  ITTAQGEELRKLIG+P YIECSSKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAASITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKK K+K  +ACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74095369|emb|CAI84892.1| putative Rho GTPase [Medicago sativa subsp. x varia]

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/197 (90%), Positives = 188/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QFF DHPGA PITTAQGEEL+KLIG+P YIEC SKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELKKLIGAPIYIECYSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PKQKK K+K  +ACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428021|ref|XP_002278633.1| PREDICTED: rac-like GTP-binding protein RAC1 isoform 2 [Vitis vinifera] gi|225428023|ref|XP_002278595.1| PREDICTED: rac-like GTP-binding protein RAC1 isoform 1 [Vitis vinifera] gi|147768427|emb|CAN73627.1| hypothetical protein VITISV_026639 [Vitis vinifera] gi|297744613|emb|CBI37875.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/198 (94%), Positives = 196/198 (98%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFIDHPGAVPITTAQGEELRKLIG+PAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 P-KQKKKKKKSHRACSIL 197
           P ++K+KK+K+ +ACSIL
Sbjct: 181 PKQKKRKKRKAQKACSIL 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106601|dbj|BAJ53109.1| JHL20J20.16 [Jatropha curcas]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 190/197 (96%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL+HYAPGVP+ILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPVILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QFFIDHPGA PITTAQGEELRKLIG+PAYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PK+ KKKKK   +CSIL
Sbjct: 181 PKKNKKKKKGQTSCSIL 197

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450502|ref|XP_004143001.1| PREDICTED: rac-like GTP-binding protein RAC1-like [Cucumis sativus] gi|449521609|ref|XP_004167822.1| PREDICTED: rac-like GTP-binding protein RAC1-like [Cucumis sativus]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/197 (94%), Positives = 191/197 (96%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPI+T QGEELRK+IG+PAYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTVQGEELRKVIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PK KKKKKKS   CSIL
Sbjct: 181 PKSKKKKKKSQNVCSIL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721849|ref|NP_001238503.1| uncharacterized protein LOC100499696 [Glycine max] gi|255625867|gb|ACU13278.1| unknown [Glycine max]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/197 (94%), Positives = 192/197 (97%), Gaps = 1/197 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPITTAQGEELRKLIG+PAYIECSSKTQQNVKAVFDAAIKVV+QP
Sbjct: 121 DLRDDKQFFMDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVIQP 180

Query: 181 PKQKKKKKKSHRACSIL 197
           PK KKK+K    ACSIL
Sbjct: 181 PKLKKKRKTQK-ACSIL 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.903	0.908	0.977	1.5e-90
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	1.0	1.0	0.873	1.9e-90
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	1.0	1.0	0.873	2.5e-90
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	1.0	1.0	0.878	1.4e-89
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	1.0	1.0	0.862	1.7e-89
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	1.0	0.994	0.853	4.6e-89
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.893	0.902	0.965	9.6e-89
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.903	0.885	0.882	7.2e-84
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.898	0.827	0.853	5.8e-82
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.898	0.823	0.836	3.7e-80

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 174/178 (97%), Positives = 176/178 (98%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
             DLRDDKQFFIDHPGAVPITT QGEEL+KLIGSP YIECSSKTQQNVKAVFDAAIKVVL
Sbjct:   121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 172/197 (87%), Positives = 184/197 (93%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXX 180
             DLRDDKQFFIDHPGAVPITTAQGEEL+KLIG+PAYIECSSKTQ+NVK VFDAAI+VVL  
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

Query:   181 XXXXXXXXXSHRACSIL 197
                      + +ACSIL
Sbjct:   181 PKQKKKKSKAQKACSIL 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 172/197 (87%), Positives = 183/197 (92%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct:     1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXX 180
             DLRDDKQFFIDHPGAVPITTAQGEELRK IG+P YIECSSKTQ+NVKAVFDAAI+VVL  
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query:   181 XXXXXXXXXSHRACSIL 197
                      + +ACSIL
Sbjct:   181 PKQKKKKSKAQKACSIL 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 173/197 (87%), Positives = 179/197 (90%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXX 180
             DLRDDKQFF+DHPGAVPITTAQGEELRK IG+P YIECSSKTQ NVK VFDAAIKVVL  
Sbjct:   121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP 180

Query:   181 XXXXXXXXXSHRACSIL 197
                         ACSIL
Sbjct:   181 PKAKKKKKAQRGACSIL 197

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 170/197 (86%), Positives = 183/197 (92%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXX 180
             DLRDDKQFFIDHPGAVPITT QGEEL+KLIG+PAYIECSSK+Q+NVK VFDAAI+VVL  
Sbjct:   121 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 180

Query:   181 XXXXXXXXXSHRACSIL 197
                      + +ACSIL
Sbjct:   181 PKQKKKKNKAQKACSIL 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 169/198 (85%), Positives = 183/198 (92%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXX 180
             DLRDDKQFF +HPGAVPI+TAQGEEL+KLIG+PAYIECS+KTQQNVKAVFDAAIKVVL  
Sbjct:   121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query:   181 -XXXXXXXXXSHRACSIL 197
                       S + CSIL
Sbjct:   181 PKNKKKKKRKSQKGCSIL 198

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 170/176 (96%), Positives = 173/176 (98%)

Query:     3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
             ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTA
Sbjct:     2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
             GQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDL
Sbjct:    62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

Query:   123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
             RDDKQFFIDHPGAVPITT QGEEL+KLIGS  YIECSSKTQQNVKAVFDAAIKVVL
Sbjct:   122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVL 177

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 157/178 (88%), Positives = 168/178 (94%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct:     1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
             DLRDDKQF  DHPGA  ITTAQGEELRK+IG+  Y+ECSSKTQQNVKAVFD AI+V L
Sbjct:   121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 151/177 (85%), Positives = 166/177 (93%)

Query:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVVD +TVNLGLWDT
Sbjct:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HYAPGVPI+LVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query:   122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
             LR+DK + +DHPG +P+TTAQGEELRK IG+  YIECSSKTQQNVK VFDAAIKVV+
Sbjct:   124 LREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVI 180

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 148/177 (83%), Positives = 166/177 (93%)

Query:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             SAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVV+G+TVNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
             AGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123

Query:   122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
             LR+DK +  DHPG  P+TTAQGEELRKLIG+  YIECSSKTQQNVKAVFD+AIK V+
Sbjct:   124 LREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVI 180

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.6113	0.9593	0.9742	yes	no
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.8527	1.0	1.0	yes	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.6432	0.9289	0.9531	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.8666	0.9137	0.8372	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.6432	0.9289	0.9531	yes	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8080	0.9949	0.9158	no	no
Q39435	RAC1_BETVU	No assigned EC number	0.9390	1.0	1.0	N/A	no
C4YDI6	CDC42_CANAW	No assigned EC number	0.5647	0.9441	0.9738	N/A	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.9137	1.0	1.0	no	no
P40792	RAC1_DROME	No assigned EC number	0.6062	0.9492	0.9739	yes	no
P62998	RAC1_BOVIN	No assigned EC number	0.6432	0.9289	0.9531	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.6432	0.9289	0.9531	yes	no
P19073	CDC42_YEAST	No assigned EC number	0.5492	0.9441	0.9738	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.8324	0.9086	0.8325	no	no
O82480	RAC7_ARATH	No assigned EC number	0.785	0.9847	0.9282	no	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.755	0.9847	0.9065	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8932	0.9035	0.9081	N/A	no
Q9SSX0	RAC1_ORYSJ	No assigned EC number	0.7731	0.9847	0.9065	no	no
Q38903	RAC2_ARATH	No assigned EC number	0.8770	0.9086	0.8905	no	no
Q38902	RAC1_ARATH	No assigned EC number	0.9238	1.0	1.0	no	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8820	0.9035	0.9081	N/A	no
Q24814	RACA_ENTHI	No assigned EC number	0.5647	0.9695	0.9744	N/A	no
Q9XGU0	RAC9_ARATH	No assigned EC number	0.7760	0.9746	0.9186	no	no
O04369	RAC1_LOTJA	No assigned EC number	0.9390	1.0	1.0	N/A	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8882	0.9086	0.9132	N/A	no
Q01112	CDC42_SCHPO	No assigned EC number	0.5675	0.9289	0.9531	yes	no
O76321	RECG_ENTHI	No assigned EC number	0.5965	0.8832	0.8743	N/A	no
Q35638	RHO1_PEA	No assigned EC number	0.9340	1.0	1.0	N/A	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8324	0.9086	0.8605	no	no
P0CY33	CDC42_CANAL	No assigned EC number	0.5647	0.9441	0.9738	N/A	no
P63001	RAC1_MOUSE	No assigned EC number	0.6432	0.9289	0.9531	yes	no
P92978	RAC11_ARATH	No assigned EC number	0.9238	1.0	1.0	no	no
Q38937	RAC5_ARATH	No assigned EC number	0.9775	0.9035	0.9081	yes	no
Q38912	RAC3_ARATH	No assigned EC number	0.8939	1.0	0.9949	no	no
Q38919	RAC4_ARATH	No assigned EC number	0.9659	0.8934	0.9025	yes	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.9238	1.0	1.0	no	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.9390	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-135
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-107
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-104
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-90
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-86
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-78
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-76
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-76
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-71
pfam00071	162	pfam00071, Ras, Ras family	2e-70
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-70
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-58
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-52
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-52
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-51
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-44
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-43
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-42
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	5e-40
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-38
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-36
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-35
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-35
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-35
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-35
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-32
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-32
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	9e-32
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	9e-32
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-31
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-30
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-30
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-29
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	9e-29
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-28
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	8e-28
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-27
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-26
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-26
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-26
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-25
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-25
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-25
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-25
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-24
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-23
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-23
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-23
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	8e-23
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-23
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-22
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-22
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-21
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-21
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-21
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-21
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-21
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-20
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-19
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-19
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-19
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-19
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-18
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-17
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-17
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-16
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	7e-16
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-15
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	9e-15
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-14
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-13
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-12
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-12
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-12
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-07
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	1e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-05
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	0.003

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  375 bits (965), Expect = e-135
 Identities = 165/173 (95%), Positives = 169/173 (97%)

Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
           FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           DYNRLRPLSYRGADVF+LAFSLISKASYENV KKWIPELRHYAPGVPI+LVGTKLDLRDD
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           KQFF DHPGAVPITTAQGEELRK IG+ AYIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  305 bits (784), Expect = e-107
 Identities = 104/174 (59%), Positives = 129/174 (74%), Gaps = 2/174 (1%)

Query: 9   CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68
            V VGDGAVGKTC+LI YT+N FP DYVPTVF+N+SA+V VDG  V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 69  RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128
           RLRPLSY   DVF++ FS+ S AS+ENV +KW PE++H+ P VPIILVGTKLDLR+DK  
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 129 FID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
             +       P+T  QG+ L K IG+  Y+ECS+ TQ+ V+ VF+ AI+  L  
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  296 bits (760), Expect = e-104
 Identities = 110/171 (64%), Positives = 131/171 (76%), Gaps = 1/171 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IK V VGDGAVGKTC+LISYT+N FPT+YVPTVFDN+SANV VDG  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF+L FS+ S +S+ENV  KW PE++HY P VPIILVGTK+DLRDD 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 127 QFFIDH-PGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 176
                      PIT  +GE+L K IG+  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  261 bits (669), Expect = 3e-90
 Identities = 112/173 (64%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  251 bits (644), Expect = 4e-86
 Identities = 97/194 (50%), Positives = 126/194 (64%), Gaps = 3/194 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
           +K V VGDG  GKTC+L+ Y   +FP +YVPTVF+N+   + V +G  + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           DY+RLRPLSY   DV ++ +S+ +  S +NV  KW PE+ H+ PG PI+LVG K DLR D
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 126 KQ--FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
           K     +   G  P+T  QGE + K IG+ AYIECS+K  +NV  VFDAAI V L    +
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGR 183

Query: 184 KKKKKKSHRACSIL 197
             +KKK  + C IL
Sbjct: 184 AARKKKKKKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  231 bits (591), Expect = 3e-78
 Identities = 104/184 (56%), Positives = 126/184 (68%), Gaps = 2/184 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLR LSY   +VFI+ FS+ S +SYENV  KW PE+ H+ P VPI+LVGTK DLR+D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
                +   G  PIT  QG  L K I +  Y+ECS+  Q  VK VF  A++ VL P   K
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK 183

Query: 185 KKKK 188
             K 
Sbjct: 184 DTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  227 bits (579), Expect = 1e-76
 Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT   GE+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  226 bits (579), Expect = 1e-76
 Identities = 90/170 (52%), Positives = 126/170 (74%), Gaps = 2/170 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++SYT+N +PT+YVPT FDNFS  V+VDG  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +++LRPL Y   DVF+L FS+++ +S++N+++KWIPE+R + P  PIILVGT+ DLR D 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 127 QFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174
              I     G  P++ ++ + L + IG+  YIECS+ TQ+N+K VFD AI
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  212 bits (541), Expect = 8e-71
 Identities = 94/174 (54%), Positives = 132/174 (75%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +    ++     PIT  QG++L K IG+  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  210 bits (538), Expect = 2e-70
 Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG VGK+ +LI +T N FP +Y+PT+  D ++  + VDG TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
           +  LRPL YRGA  F+L + + S+ S+ENV KKW+ E+  +A   VPI+LVG K DL D 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           ++T +GE L K +G P ++E S+KT +NV+  F+   + +L+
Sbjct: 120 RV----------VSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  210 bits (536), Expect = 4e-70
 Identities = 86/173 (49%), Positives = 118/173 (68%), Gaps = 2/173 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 128 FFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
              +       P+   +G  + + IG+  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  181 bits (461), Expect = 2e-58
 Identities = 81/182 (44%), Positives = 110/182 (60%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKT +L  +T   FP +Y PTVF+N+  +  VDG  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
            RLRPLSY  A V ++ F++ +  S ENV  KWI E+R Y P VP+ILVG K DLR +  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122

Query: 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKK 187
              ++     +   Q + + + IG+  Y+ECS+ T + V  VF+AA +  L   K  K++
Sbjct: 123 AKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSGKEE 182

Query: 188 KK 189
             
Sbjct: 183 PG 184

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  166 bits (422), Expect = 1e-52
 Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  ++FP +YVPTVF+N++A+  VD   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E+R + P  P++LVG K DLR D 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 127 QFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAA 173
               +  +   +P++  QG  L K IG+ AY+ECS+KT +N V+ VF+ A
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  163 bits (416), Expect = 6e-52
 Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 14/171 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +GD  VGKT +L+ +  N F  +Y  T+  +F S  + VDG  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            +  +    YRGA   IL + + ++ S+EN+  KW+ EL+ YAP  +PIILVG K DL D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           ++Q          ++T + ++  K  G   + E S+KT +NV   F++  +
Sbjct: 120 ERQ----------VSTEEAQQFAKENGLL-FFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  163 bits (414), Expect = 2e-51
 Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 10/191 (5%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VDG  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLR LSY    V +L FS+ +  S ENV  KW+ E+RH+ PGV ++LV  K DLR+ + 
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL--QPPKQKK 185
                     I+  +G  + K I +  Y+ECS+K  + V   F  A +V L  +PP    
Sbjct: 122 ERDRGTHT--ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHPHS 179

Query: 186 KKKKSHRACSI 196
                 RAC+I
Sbjct: 180 ------RACTI 184

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  145 bits (367), Expect = 7e-44
 Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWD 60
              +  K V +GDG VGKT +L     + FP  Y PT+ +   A  +      + L LWD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           TAGQE+Y  LRP  YRGA+  ++ +    + S + + ++W+ ELR  AP  VPI+LVG K
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 120 LDLRDDKQ----FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK--TQQNVKAVFDAA 173
           +DL D++             V +     + +   + +PA +E S+K  T  NV  +F   
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 174 IKVVLQPPKQKKKKKKSHRACSIL 197
           ++ +L+  ++   K +  +   + 
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  142 bits (360), Expect = 2e-43
 Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ +L  +T   F   Y  T+  +F    + VDG  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + + ++ S+EN+ + W+ ELR YA P V I+LVG K DL +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            +Q          ++  + E   +  G P + E S+KT  NV+  F+   + +L+
Sbjct: 120 QRQ----------VSREEAEAFAEEHGLP-FFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  139 bits (352), Expect = 2e-42
 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I + S  F  +Y PT+ D++   +VVDG T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  D FIL +S+ S+ S+E +   ++ I  ++     VPI+LVG K DL ++
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED-VPIVLVGNKCDLENE 119

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +Q          ++T +GE L +  G P ++E S+KT  N+  +F+  ++
Sbjct: 120 RQ----------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  134 bits (338), Expect = 5e-40
 Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 128 FFIDHPG--AVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAA 173
             ++       P++  QG  + K IG+  YIECS+   +N V+ +F  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  131 bits (331), Expect = 2e-38
 Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 15/194 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD-- 125
           + +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KLD+R D  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 126 ------KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVVL 178
                 KQ  I      P+T  QG  L + +G+ AY+ECSS+  +N V+ VF       +
Sbjct: 123 TLRELSKQRLI------PVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Query: 179 QPPKQKKKKKKSHR 192
           +      K+  S R
Sbjct: 177 RREHPSLKRSTSRR 190

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  126 bits (317), Expect = 3e-36
 Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +     +++  KKW  E+  Y P   I+L+G K DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 128 FFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAVFDAAIKVVLQPPKQK 184
             ++  +    PI+  QG  + K +G+ AY+ECS+ T ++++ ++F  A  + +      
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Query: 185 KKKKKSHR 192
            KK     
Sbjct: 195 AKKSPVRS 202

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  122 bits (308), Expect = 2e-35
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  DY PT+ D++   + +DG    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+L +S+  + S+E + K  + I  ++     VPI+LVG K DL  +
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE 120

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +           ++T +G+EL +  G P ++E S+K + NV   F
Sbjct: 121 RV----------VSTEEGKELARQWGCP-FLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  121 bits (306), Expect = 3e-35
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  +Y PT+ D++   + +DG    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+L +S+  + S+E +AK  + I  ++     VPI+LVG K DL ++
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNKCDLENE 122

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +           ++T +G+EL +  G P ++E S+K + NV   F
Sbjct: 123 RV----------VSTEEGKELARQWGCP-FLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  120 bits (304), Expect = 5e-35
 Identities = 62/169 (36%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
           IK V VGD  VGK+ +L     N    T+Y P    N+   V+  DG T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAP-GVPIILVGTKLDL 122
           EDY+ +R L YR  +  +  F ++      E + +K   E+ H+A  GVPIILVG K+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
           RD K           + T       KL G P  I  S++T +N+ + F 
Sbjct: 122 RDAK-----------LKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  120 bits (303), Expect = 8e-35
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 14/168 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  N F   +  T   +F    V + G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YR AD  IL + +    S++ V KKWI EL+      + +++VG K+DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
            +           ++ ++ EE  K +G+  + E S+KT + ++ +F +
Sbjct: 120 QRV----------VSKSEAEEYAKSVGAK-HFETSAKTGKGIEELFLS 156

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  113 bits (285), Expect = 4e-32
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 18/169 (10%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAGQ 64
           K V +GD +VGK+ +++ +  N F  +   T+   F   +  V +D +TV   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E Y  L P+ YRGA   I+ + + S+ S+E  AK W+ EL+ H  P + I L G K DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
             +Q          ++T + +E     G   ++E S+KT +NV  +F  
Sbjct: 120 SKRQ----------VSTEEAQEYADENG-LLFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  113 bits (284), Expect = 4e-32
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ S+ S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                       ++T QG++L K  G P YIE S+KT+Q V+  F
Sbjct: 122 T-----------VSTRQGQDLAKSYGIP-YIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  113 bits (285), Expect = 6e-32
 Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 15/199 (7%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           AS   K V VG G VGK+ + I +  N F  +Y PT+ D++    V+D  T  L + DTA
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLD 121
           GQE+Y+ +R    R    F+  +S+ S++S+E +A      LR      VP+ILVG K D
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV---L 178
           L  ++Q          ++T +G+EL K  G P ++E S+K + NV   F   ++ +   L
Sbjct: 122 LDSERQ----------VSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFYELVREIRKYL 170

Query: 179 QPPKQKKKKKKSHRACSIL 197
           +     +K+KK    C IL
Sbjct: 171 KEDMPSQKQKKKGGLCLIL 189

Length = 189

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  112 bits (282), Expect = 9e-32
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL D 
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           K           +   + +E    +G P ++E S+K   NV+  F
Sbjct: 123 KV----------VDYTEAKEFADELGIP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  113 bits (284), Expect = 9e-32
 Identities = 82/194 (42%), Positives = 104/194 (53%), Gaps = 28/194 (14%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVF--DNF--------SANVVVD 50
           IKCV VGD AVGKT ++ +   N   T Y      VPTV+  D +         +  VVD
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 51  GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG 110
           G +V+L LWDT G  D+++ R  +Y  +DV +L FS+ S  S  NV   W PE+RH+ P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 111 VPIILVGTKLDLRD---DKQFFIDHPGAVPITTA------QGEELRKLIGSPAYIECSSK 161
           VP+ILVG KLDLR    D+      P A PI  A       G  + K +G P Y E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIP-YYETSVV 179

Query: 162 TQQNVKAVFDAAIK 175
           TQ  VK VFD AI+
Sbjct: 180 TQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  110 bits (278), Expect = 4e-31
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + VD  TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 67  YNRLRPLSY-RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRD 124
           +  L P SY R + V ++ + + ++ S++N   KWI ++R       II LVG K DL D
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
            +Q          ++T +GE+  K   +  +IE S+K   NVK +F 
Sbjct: 120 KRQ----------VSTEEGEKKAKENNA-MFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  108 bits (273), Expect = 2e-30
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 14/166 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ ++ ++F   ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + S+EN+ K W+  +  +A   V  +LVG K D+ +
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCDMEE 122

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            +           ++  +GE L +  G   ++E S+K   NV+  F
Sbjct: 123 KRV----------VSKEEGEALAREYGIK-FLETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  108 bits (272), Expect = 2e-30
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAG 63
           IK + VG+G VGK+ M+  +    F  DY  T+  +F    + +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           QE+++ +    YRGA   IL FS   + S+E + + W  ++      +P++LV TK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLL 119

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
           D          AV IT  + E L K +  P +   S K   NV  +F+
Sbjct: 120 DQ---------AV-ITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  107 bits (268), Expect = 1e-29
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 16/168 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+ +L+ +T +TF  D   T+  +F    V VDG  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLR 123
            +  L    YRGA   IL + +  + +++N+   W+ EL  Y+  P    +LVG K+D  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
           +             +T  +G++  +      +IE S+KT+  V+  F+
Sbjct: 120 N-----------REVTREEGQKFARKHNML-FIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  106 bits (267), Expect = 3e-29
 Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 26/203 (12%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +GDG VGKT + I    N F   Y PT+ D++   VVVDG    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR---HYAPGVPIILVGTKLDLRD 124
             LR    R  + FIL +S+ S++++E V +      R     A  VPI++VG K D   
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK--------- 175
           +++          ++T +G  L + +G   +IE S+KT  NV+  F   ++         
Sbjct: 121 ERE----------VSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQQRQGG 169

Query: 176 -VVLQPPKQKKKKKKSHRACSIL 197
                 P +KK+KKK  R C I+
Sbjct: 170 QGPKGGPTKKKEKKK--RKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  104 bits (262), Expect = 9e-29
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K V VG G VGK+ + I +  + F TDY PT+ D+++    +DG    L + DTAGQ
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E+++ +R    R  + F+L FS+  + S+E V K     LR       P+ILVG K DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 124 DDKQFFIDHPGAVPITTAQGEEL-RKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
             +Q          ++  +G+EL R+L     YIE S+K + NV   F   ++V+
Sbjct: 121 HQRQ----------VSREEGQELARQL--KIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  103 bits (259), Expect = 3e-28
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC++  + S TF      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           +  +    YR A+  I+A+ +  ++S+E+V   WI E+  Y A  V ++L+G K DL + 
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           ++          +   +   L +  G  A +E S+K   NV+  F
Sbjct: 124 RE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  102 bits (257), Expect = 8e-28
 Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 25/186 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-----------VN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV  S            V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH--YAPGVPI 113
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 114 ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 173
           +L+G K DL D ++          ++  Q  EL    G P Y E S+ T QNV+   +  
Sbjct: 124 VLIGNKADLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVETL 172

Query: 174 IKVVLQ 179
           + ++++
Sbjct: 173 LDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 99.8 bits (249), Expect = 7e-27
 Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126
             +R   +R  + F+L FS+    S+  +A+     LR      VP++LVG K DL D +
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           Q  ++          +   L +  G   Y+E S+KT+ NV  VF
Sbjct: 122 QVSVE----------EAANLAEQWGVN-YVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 98.8 bits (247), Expect = 2e-26
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  D   T+   F+   + +DG T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           Y  +    YRGA   +L + +  K+++ENV  +W+ ELR +A   + I+LVG K DLR  
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +        AVP   A+    +  +   ++IE S+    NV+  F
Sbjct: 124 R--------AVPTEEAKAFAEKNGL---SFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 98.5 bits (245), Expect = 3e-26
 Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGKTC+L  +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 71  RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFF 129
               YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q  
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQ-- 122

Query: 130 IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                   +   QG +L K  G   + E S+ T +N+K  F    ++VLQ
Sbjct: 123 --------VGDEQGNKLAKEYGMD-FFETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 98.5 bits (246), Expect = 4e-26
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 22/194 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + + +    F   Y PT+ + FS  +   G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDK 126
           + L      G   +IL +S+ S+ S+E V   +   L       VPI+LVG K DL  ++
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMER 122

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI----KVVLQPPK 182
           Q          ++  +G++L +  G+ A++E S+K  +NV+  F+  I    KV    P 
Sbjct: 123 Q----------VSAEEGKKLAESWGA-AFLESSAKENENVEEAFELLIEEIEKVENPLPP 171

Query: 183 QKKKKKKSHRACSI 196
            +K K      CS+
Sbjct: 172 GQKSK------CSV 179

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 97.1 bits (242), Expect = 9e-26
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+   F + VV V G +V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + S+ S+  +   W+ + R  A P + IILVG K DL DD
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALT-NWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           ++  +    A     AQ   L        ++E S+ T +NV+  F    + +
Sbjct: 121 RE--VTFLEAS--RFAQENGLL-------FLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV   F+  VV VDG  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            +  +    YR A   +L + + +K+S++N+ + W+ E+  YA   V I+L+G K D+  
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           ++           +    GE L K  G P ++E S+KT  NV+  F A  K
Sbjct: 121 ERV----------VKREDGERLAKEYGVP-FMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 96.1 bits (239), Expect = 2e-25
 Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + S TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R L  +    FI+ +SL+++ +++++   +  I  ++ Y   VPIILVG K+DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           ++          +++A+G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 122 RE----------VSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 96.1 bits (239), Expect = 2e-25
 Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 121

Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K+D+ + +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 122 NKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 95.4 bits (238), Expect = 4e-25
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V VD   V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PG-VPIILVGTKLD 121
           +  L    YRGAD  +L + + +  S+E++   W  E    A    P   P +++G K+D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           L + +Q          ++T + ++  K  G+  Y E S+K   NV   F+   ++ L+
Sbjct: 121 LEEKRQ----------VSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 95.2 bits (237), Expect = 6e-25
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 20/177 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + +  + ++ ++   W+ + R ++   + I+L+G K DL   
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 126 KQFFIDHPGAVPITTAQGEELRK---LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++          ++  +GE   +   LI    ++E S+KT  NV+  F    K +  
Sbjct: 125 RE----------VSYEEGEAFAREHGLI----FMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +  N F   Y PT+ D++   V +DG   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY------APGVPIILVGTKLD 121
             +R L  +    F+L +S+ S+AS   +      ELR        +  VP++LVG K D
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG-----ELREQVLRIKDSDNVPMVLVGNKAD 117

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           L DD+Q          ++   G  L +  G+  + E S++ + NV  VF   ++ ++
Sbjct: 118 LEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 93.3 bits (232), Expect = 8e-24
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQEDY 67
           + +GD  VGK+ +L  +T   F     PTV  +F + ++    G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPI-ILVGTKLDLRDD 125
             +    YR +   +L F + ++ S+E+V   W+ E R H  P  P+ ILVG K DL   
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q          +T  + E+L K +G   YIE S++T  NV+  F
Sbjct: 125 RQ----------VTREEAEKLAKDLGM-KYIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 21/174 (12%)

Query: 10  VTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           V VG G VGK+ +L +               T  D       +D   V L L DT G ++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 67  YNRLRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           +  L       L  RGAD+ +L      + S E+     +  LR    G+PIILVG K+D
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR--KEGIPIILVGNKID 117

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           L +++           +      E    I      E S+KT + V  +F+  I+
Sbjct: 118 LLEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 92.3 bits (229), Expect = 2e-23
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 14/181 (7%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
           MS +   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +D   + L +W
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
           DTAGQE +  +    YRGA   +L + +  + ++ ++A  W+ + R +A   + I+L+G 
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL         H  AV  +T +GE+  K  G   ++E S+KT QNV+  F      + 
Sbjct: 120 KCDLA--------HRRAV--STEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIY 168

Query: 179 Q 179
           +
Sbjct: 169 K 169

Length = 210

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 91.9 bits (228), Expect = 2e-23
 Identities = 58/170 (34%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQ 64
           +K V +G  +VGKT ++  Y  + F    Y  T+   F A  +VV    V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL-- 122
           E Y  +  + YRGA   I+ + L   +S+E   K W+ EL++      I L GTK DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 123 --RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             R  +Q        V     Q  +    I +  + E SSKT QNV  +F
Sbjct: 120 QDRSLRQ--------VDFHDVQ--DFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 89.5 bits (222), Expect = 8e-23
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + + S++FP  + PT+ D +     +D     L + DTAGQ
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDL 122
            ++  +R    R  + FI+ +S+  + S++  +  K+ I  +R     +P++LVG K+DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDL 119

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
              +Q          +TT +G  L +    P + E S+  +  +   F   ++
Sbjct: 120 EQQRQ----------VTTEEGRNLAREFNCP-FFETSAALRFYIDDAFHGLVR 161

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 89.2 bits (221), Expect = 9e-23
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F + +V TV  +F    V      + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     +ILVG K D+ D+
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           +           ++  +G +L   +G   + E S+K   NVK VF+  + ++
Sbjct: 122 RV----------VSAERGRQLADQLGF-EFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 88.4 bits (219), Expect = 2e-22
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   + VD     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F L +S+ ++ S+ ++   ++ I  ++     VP+ILVG K DL D+
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILVGNKCDLEDE 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +           ++  +G+ L +  G+  ++E S+K++ NV  +F
Sbjct: 122 RV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 16/177 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+S+ S++   D  PT+  +F    + V G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRD 124
           +  L    YR A   IL + +  + ++ N++  W  E+  Y+     +  LVG K+D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA-AIKVVLQP 180
           ++           ++  +G  L K  G   ++ECS+KT++NV+  F+  A+K++  P
Sbjct: 135 ERD----------VSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEVP 180

Length = 211

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 86.5 bits (214), Expect = 1e-21
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
           K + VGD +VGKTC++  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAPG-VPIILVGTKLDLRD 124
           +  +    YRGA   I+ F L   AS E+  ++W+ + L+   P  V + LVGTK DL  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             Q+ +    A+ +      E         Y   S+ T +NV+  F
Sbjct: 121 PAQYALMEQDAIKLAREMKAE---------YWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 20/179 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED- 66
           K   +G   VGK+ + + + +  F  +Y P +   +S  V +DG  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 67  ---YNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLD 121
               +  R L  R AD F+L +S+  ++S++ V+   + I E++     +P+ILVG K D
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS-SKTQQNVKAVFDAAIKVVLQ 179
           L   +Q          ++T +G++L   +G   + E S ++    V+ VF    + V +
Sbjct: 119 LLHSRQ----------VSTEEGQKLALELGC-LFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 85.3 bits (211), Expect = 3e-21
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F+L +S+ +++++ ++   ++ I  ++     VP+ILVG K DL D+
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +           +   QG+ L +  G  A++E S+K + NV  +F   ++
Sbjct: 122 RV----------VGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 85.1 bits (211), Expect = 3e-21
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ V +GD  VGK+ +++S  S  FP + VP V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
                    R A+V  L +S+   ++ E +  KW+P +R     VPIILVG K DLRD  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 121

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
                    +PI      E R++      +ECS+KT  NV  VF  A K VL P
Sbjct: 122 SQAGLEEEMLPIM----NEFREIE---TCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 84.9 bits (210), Expect = 6e-21
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +G+  VGKTC++  +T   FP     T+  +F    V + G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YR A+  IL + +  + S+  +  +W+ E+  YA   V  ILVG K+DL + 
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER 127

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           ++          ++  + EE         Y+E S+K   NV+ +F
Sbjct: 128 RE----------VSQQRAEEFSD-AQDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 84.9 bits (210), Expect = 1e-20
 Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 18/186 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRG    I+ + + +  S+ NV K+W+ E+      V  +LVG K D  D +
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND--DPE 124

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL-----QPP 181
           +  ++   A       G  L          E S+K   NV+ +F+   ++VL        
Sbjct: 125 RKVVETEDAYKFAGQMGISL---------FETSAKENINVEEMFNCITELVLRAKKDNLA 175

Query: 182 KQKKKK 187
           KQ++++
Sbjct: 176 KQQQQQ 181

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 82.6 bits (204), Expect = 3e-20
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-----NVVVDGSTVNLGLWDT 61
           +K + +GD AVGK+ ++  +  +     Y P     ++      N   +G T+ +  WDT
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMD----GYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE +  +    Y  A   IL F +  K +Y+N+  KW  ELR Y P +P I+V  K+D
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKID 115

Query: 122 L 122
           L
Sbjct: 116 L 116

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   ++ + +  +++Y +++  W+ + R+   P   I L+G K DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +   + +  A       G     L+    ++ECS+KT +NV+  F    K + Q
Sbjct: 123 RD--VTYEEAKQFADENG-----LL----FLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------DGSTVNLGLW 59
            K V VGDG  GKT  +  + +  F   YV T+       V V       +   +   +W
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLDFHTNRGKIRFNVW 54

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           DTAGQE +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PI+L G K
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNK 113

Query: 120 LDLRDDK 126
           +D++D K
Sbjct: 114 VDIKDRK 120

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 80.3 bits (198), Expect = 3e-19
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 19/171 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVV---VDGSTVNLGLWDTA 62
           +C  VGD AVGK+ ++  + S+  TF  +Y  T   +     V       +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTKL 120
           GQE ++ +    +    V  + + + ++ S+ N + +WI  +R ++ G+  P +LVG K 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS-RWINRVRTHSHGLHTPGVLVGNKC 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
           DL D ++          +  AQ + L     +  + E S+K     +A F 
Sbjct: 121 DLTDRRE----------VDAAQAQAL-AQANTLKFYETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 79.8 bits (197), Expect = 4e-19
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAG 63
           R  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 64  QEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKL 120
           QE + + +    YR     +  + + + AS+ ++   WI E   ++    VP ILVG K 
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKC 119

Query: 121 DLRDDKQ 127
           DLR+  Q
Sbjct: 120 DLREQIQ 126

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + V+G TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   +L + +  + +++NV ++W+ ELR +A   + I++ G K DL   
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDL--- 129

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                +H  +V     Q    ++ +   +++E S+    NV+  F
Sbjct: 130 -----NHLRSVAEEDGQALAEKEGL---SFLETSALEATNVEKAF 166

Length = 216

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 10/125 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-----VVDGSTVNLGLWDT 61
            K + VGDG VGKT  +  + +  F   Y+PT+       V       +   +   +WDT
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL----GVEVHPLKFYTNCGPICFNVWDT 65

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE +  LR   Y      I+ F + S+ +Y+NV   W  ++      +PI+LVG K+D
Sbjct: 66  AGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVD 124

Query: 122 LRDDK 126
           ++D +
Sbjct: 125 VKDRQ 129

Length = 215

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
           K V +GD   GK+ +L       FP + +    D  + + + VDG T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKL 120
                 +  + AD  +L + L  + S   V+    W+P LR     +P+ILVG KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYN 68
           + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE +N
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 69  RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQ 127
            +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Query: 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                     IT  QGE+  + I    + E S+K   NV  +F
Sbjct: 123 ----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 16/195 (8%)

Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
            +K + VGD  VGK  +L S    +  + Y   +  D  +  +++DG  V L LWDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
             +  +     RGA   IL + + ++ S++ +  +WI E+  +APGVP ILVG +L L  
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAF 124

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ---PP 181
            +Q          + T Q +   +  G   + E S     N+   F    ++VL     P
Sbjct: 125 KRQ----------VATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLMRHGRP 173

Query: 182 KQKKKKKKSHRACSI 196
            Q   +  S  +C I
Sbjct: 174 PQSPPQNCSRNSCKI 188

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 72.9 bits (179), Expect = 5e-16
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----FDNFSANVVVDGSTVNLGLWDT 61
            K V VGDG  GKT  +  + +  F   Y PT+       +F  N       +    WDT
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----GKIRFYCWDT 69

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+D
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 128

Query: 122 LRDDK 126
           +++ +
Sbjct: 129 VKNRQ 133

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 72.0 bits (177), Expect = 7e-16
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQE 65
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V+     + V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR---HYAPG--VPIILVGTKL 120
            +  +  + Y+GA   I+ F +   +++E V  KW  +L        G  +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DL+            +     Q ++  K  G   + E S+K   N++      +K +L
Sbjct: 121 DLK---------KERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K   +GD  +GKT +++ Y    F  +Y+ T+  NF    + + G+ +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           ++  + PL  + A   +  F L  K++  ++ K+W  + R +      ILVGTK DL   
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTKYDL--- 116

Query: 126 KQFFIDHPGAVPIT-TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
              F D P       T Q  +  K + +P  I CS+    NV+ +F    K VL
Sbjct: 117 ---FADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSINVQKIF----KFVL 162

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + V  G G VGK+ +++ +   TF   Y+PT+ D +   +    S   L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKW--IPELR-HYAPGVPIILVGTKLDLRD 124
             ++ LS      FIL +S+ SK S E +   +  I E++ +    +PI+LVG K D   
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESP 122

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            ++          +++++G  L +   + A++E S+KT  NV+ +F
Sbjct: 123 SRE----------VSSSEGAALAR-TWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 69.9 bits (171), Expect = 5e-15
 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 26/201 (12%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K V +GD  VGKT +L  Y    F  D V TV   F    +      N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           ++ L  +  RGA   IL + + +  S E +  +++             +VG KLDL ++ 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 127 QFFIDHPGAVPITT-------------AQGEELRKLIG-----SPA----YIECSSKTQQ 164
                   A    +             A  + + K        SPA      E S+KT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 165 NVKAVFDAAIKVVLQPPKQKK 185
           NV  +F+    +VL     ++
Sbjct: 177 NVDELFEYLFNLVLPLILAQR 197

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 69.1 bits (169), Expect = 9e-15
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + V +G   VGKT ++  +  +TF   +  TV +  S    V G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R LS +  D F L +S+    S+E V   ++ I E++     VPI++VG K+D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKIDSLAE 119

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q          +  A      +L  +  ++E S+K  +NV  VF
Sbjct: 120 RQ----------VEAADALSTVELDWNNGFVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%)

Query: 8   KCVTVGDGAVGKTCM-LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           + V +GD  VGK+ +  I        + Y  +  D +   V VDG    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLRD 124
              L     +  D +++ +S+  ++S+E  A +   +LR    A  +PIILVG K DL  
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFE-KASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            ++          ++  +G     +     +IE S+  Q NV  +F+  ++ V      K
Sbjct: 121 SRE----------VSVQEGRACAVVF-DCKFIETSAALQHNVDELFEGIVRQVRLRRDSK 169

Query: 185 KKKKKS 190
           +K  + 
Sbjct: 170 EKNTRR 175

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 25/175 (14%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69
           V +G   VGKT ++  +    F   Y PT+ D       + G    L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 70  LRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYA-------PGVPIILVGTKL 120
           +R LS    DVFIL FSL ++ S+E V   ++ I E +            +P+++ G K 
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIG---SPAYIECSSKTQQNVKAVFDA 172
           D         D P  V     Q +E+ +L+G   + AY E S+K   N+  +F A
Sbjct: 124 DR--------DFPREV-----QRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70
           VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 71  RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           R   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+D++D K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 17/159 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAG 63
            K + VG G VGKT +        F  D   T      ++      +   + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           QE Y+           +++L F L +      V   W+ +++ +    P+ILVGT +D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVILVGTHIDES 119

Query: 124 DD---------KQFFIDHPGAVPITTAQG---EELRKLI 150
            D         K+F         ++   G    EL+K I
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAI 158

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 19/173 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK +++G+  VGK+C++  Y    F + Y+PT+  D     V V    V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG------VPIILVGTK 119
           +Y  +R   Y+     +L + +  + S+E +   W+ E++           + +++   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
                     ID      ++  +G    +  G   Y E S+ T + V  +F  
Sbjct: 120 ----------IDLTKHRAVSEDEGRLWAESKGF-KYFETSACTGEGVNEMFQT 161

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 29  NTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87
           +TF  +Y  T+  D  S  + +D   V L LWDTAGQE +  L P   R +   I+ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 88  ISKASYENVAKKWIPE-LRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 146
            ++ S+EN   KWI + L      V I LVG K DL D ++          +T  +G + 
Sbjct: 63  TNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDLRK----------VTYEEGMQK 111

Query: 147 RKLIGSPAYIECSSKTQQNVKAVF 170
            +   +  + E S+K   N+K +F
Sbjct: 112 AQEYNT-MFHETSAKAGHNIKVLF 134

Length = 176

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTAGQ 64
           IK V +GDGA GKT ++  +    F   Y  T+  D FS  + + GS  V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG----VPIILVGTKL 120
           +   ++      GA    L + + +  S+EN+ + W+  ++           ++LVG K 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENL-EDWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 121 DLRDDKQ 127
           DL  ++Q
Sbjct: 120 DLEHNRQ 126

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 24/180 (13%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWD---------T 61
           +G   VGKT ++  + +  FP +Y+PT     +   VV+ G   +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHY-APGVPIILVGT 118
           AGQE +   R    R +  FIL + + S  S+  V   ++ I E R       PI++VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           K D +  + F   H  +V         L +      Y+ECS+K   ++  +F   +    
Sbjct: 125 KRDQQRHR-FAPRHVLSV---------LVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG+   GK+ ++  Y + ++     P     F   V+VDG +  L + D  G  D     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 72  PLSYRG-ADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQF 128
              + G  D  I  FSL  +AS++ V  +   +L  Y     +P+ILVGT+     D   
Sbjct: 60  -AQFAGWVDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ-----DA-- 110

Query: 129 FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF-DAAIKV 176
            I       I  A+  +L   +   +Y E  +    NV+ VF +AA K+
Sbjct: 111 -ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT ++    S  F  D +PTV   F+   V  G+ V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTV--GFNMRKVTKGN-VTIKVWDLGGQP---RFR 58

Query: 72  PL--SY-RGADVFILAFSLISKASYENVAKKWIPEL--RHYAPGVPIILVGTKLDL 122
            +   Y RG +  +       +   E VAK  + +L  +    G+P++++G K DL
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLE-VAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 35/195 (17%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDY 67
           V +G  + GKT +L     N F  + VPT  F+     V + +   V    WD  GQE  
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE-- 63

Query: 68  NRLRPL--SY-RGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDL 122
            +LRPL  SY R  D  +     +     E  AK  + ++  ++   GVP++++  K DL
Sbjct: 64  -KLRPLWKSYTRCTDGIVFVVDSVDVERMEE-AKTELHKITKFSENQGVPVLVLANKQDL 121

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIG-------SPAYIE-CSSKTQQNVKAVFDAAI 174
                     P A+P++     E+ KL+        +P +++   +   + ++   +   
Sbjct: 122 ----------PNALPVS-----EVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLY 166

Query: 175 KVVLQPPKQKKKKKK 189
           +++L+  K  +++KK
Sbjct: 167 EMILKRRKMLRQQKK 181

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.98
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.98
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.98
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
PTZ00099	176	rab6; Provisional	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
KOG1673	205	consensus Ras GTPases [General function prediction	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.8
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.8
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.76
CHL00071	409	tufA elongation factor Tu	99.76
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.74
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.74
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.73
PRK00049	396	elongation factor Tu; Reviewed	99.73
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.73
PRK13351	687	elongation factor G; Reviewed	99.71
PLN03127	447	Elongation factor Tu; Provisional	99.71
PLN03126	478	Elongation factor Tu; Provisional	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.71
COG1163	365	DRG Predicted GTPase [General function prediction	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
COG0536	369	Obg Predicted GTPase [General function prediction	99.71
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.7
COG0218	200	Predicted GTPase [General function prediction only	99.7
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.7
COG2262	411	HflX GTPases [General function prediction only]	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.69
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.68
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.65
PRK09866	741	hypothetical protein; Provisional	99.65
PRK12739	691	elongation factor G; Reviewed	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.61
PRK00007	693	elongation factor G; Reviewed	99.61
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.61
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.61
PRK14845	1049	translation initiation factor IF-2; Provisional	99.59
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.59
PRK12740	668	elongation factor G; Reviewed	99.59
PRK09602	396	translation-associated GTPase; Reviewed	99.58
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.58
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.57
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.57
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.55
KOG0090	238	consensus Signal recognition particle receptor, be	99.55
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.54
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.52
PRK13768	253	GTPase; Provisional	99.51
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.48
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.48
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.47
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.46
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.45
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.45
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.45
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.42
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.42
PTZ00258	390	GTP-binding protein; Provisional	99.41
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.4
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.4
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.38
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.37
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.36
PRK07560	731	elongation factor EF-2; Reviewed	99.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.35
PTZ00416	836	elongation factor 2; Provisional	99.35
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.33
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.32
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.31
PRK09601	364	GTP-binding protein YchF; Reviewed	99.28
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.28
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.27
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.26
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.22
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.22
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.2
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.19
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.15
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.13
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.13
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.13
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.12
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.11
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.1
PRK00098	298	GTPase RsgA; Reviewed	99.1
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.09
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.08
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.08
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.07
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.05
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.03
PRK12289	352	GTPase RsgA; Reviewed	99.02
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.0
KOG1143	591	consensus Predicted translation elongation factor	98.99
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.97
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.96
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.95
KOG0410	410	consensus Predicted GTP binding protein [General f	98.93
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.89
PRK12288	347	GTPase RsgA; Reviewed	98.88
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.86
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.82
KOG2486	320	consensus Predicted GTPase [General function predi	98.79
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.79
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.78
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.73
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.73
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.71
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.7
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.65
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.64
KOG0460	449	consensus Mitochondrial translation elongation fac	98.64
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.62
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.62
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.61
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.61
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.6
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.58
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.57
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.57
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.56
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.5
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.49
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.49
COG1161	322	Predicted GTPases [General function prediction onl	98.47
PRK13796	365	GTPase YqeH; Provisional	98.46
PRK12288	347	GTPase RsgA; Reviewed	98.46
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.44
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.42
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.42
PRK10416	318	signal recognition particle-docking protein FtsY;	98.42
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.41
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.39
PRK01889	356	GTPase RsgA; Reviewed	98.39
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.37
PRK14974	336	cell division protein FtsY; Provisional	98.36
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.36
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.36
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.36
cd03112	158	CobW_like The function of this protein family is u	98.35
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.33
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.3
PRK12289	352	GTPase RsgA; Reviewed	98.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.26
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.25
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.24
COG1162	301	Predicted GTPases [General function prediction onl	98.21
COG1162	301	Predicted GTPases [General function prediction onl	98.2
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.19
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.15
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.14
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.13
PRK00098	298	GTPase RsgA; Reviewed	98.13
PRK13796	365	GTPase YqeH; Provisional	98.11
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.0
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.0
KOG1533	290	consensus Predicted GTPase [General function predi	98.0
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.98
PRK10867	433	signal recognition particle protein; Provisional	97.97
cd03114	148	ArgK-like The function of this protein family is u	97.94
COG3523	1188	IcmF Type VI protein secretion system component Va	97.92
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.84
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.84
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.81
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.81
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.8
PRK13695	174	putative NTPase; Provisional	97.79
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.78
TIGR00959	428	ffh signal recognition particle protein. This mode	97.77
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
KOG2484	435	consensus GTPase [General function prediction only	97.65
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.61
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.61
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.61
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.6
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.6
PRK08118	167	topology modulation protein; Reviewed	97.59
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.57
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.55
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.55
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.53
PRK07261	171	topology modulation protein; Provisional	97.53
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.52
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.52
COG0523	323	Putative GTPases (G3E family) [General function pr	97.5
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.49
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.49
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.47
PRK05480	209	uridine/cytidine kinase; Provisional	97.43
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.43
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.42
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.41
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.41
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.4
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.4
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.37
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.36
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.35
PRK14737	186	gmk guanylate kinase; Provisional	97.34
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.33
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.33
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.32
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.3
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.26
PRK14530	215	adenylate kinase; Provisional	97.25
PRK06217	183	hypothetical protein; Validated	97.25
PF00004	132	AAA: ATPase family associated with various cellula	97.25
PRK14527	191	adenylate kinase; Provisional	97.23
PRK14738	206	gmk guanylate kinase; Provisional	97.22
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.21
PTZ00088	229	adenylate kinase 1; Provisional	97.2
PRK01889	356	GTPase RsgA; Reviewed	97.2
smart00382	148	AAA ATPases associated with a variety of cellular	97.19
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.18
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.18
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.18
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.15
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.15
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.14
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.14
PRK03839	180	putative kinase; Provisional	97.13
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.13
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.12
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.12
cd03110	179	Fer4_NifH_child This protein family's function is	97.11
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.09
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.09
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.08
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.08
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.05
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.05
PRK14532	188	adenylate kinase; Provisional	97.04
PRK08233	182	hypothetical protein; Provisional	97.04
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.04
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.04
PRK13949	169	shikimate kinase; Provisional	97.03
PRK14531	183	adenylate kinase; Provisional	97.03
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.02
PLN02200	234	adenylate kinase family protein	97.01
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.01
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.99
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.99
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.98
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.97
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.97
PLN02674	244	adenylate kinase	96.95
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.95
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.95
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.95
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.93
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.93
PRK02496	184	adk adenylate kinase; Provisional	96.93
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.91
PRK00625	173	shikimate kinase; Provisional	96.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.9
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.9
PRK00300	205	gmk guanylate kinase; Provisional	96.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.89

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-41  Score=228.41  Aligned_cols=167  Identities=36%  Similarity=0.696  Sum_probs=155.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+-|||+|+|.+|||||+|+.||..+.|.+.+..|++-.+ ...+.++++.+.+++|||+||++|+++..+++++||++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            3579999999999999999999999999999999996555 567889999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||+++.+||..+ ..|+..+..+. +++|.++||||+|+.+...          ++.++++.|+..++.+.++|+||+
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK  155 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK  155 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence            99999999999999 99999999998 6889999999999988776          999999999999999449999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++.++++.|..|...+.++.
T Consensus       156 ~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             CccCHHHHHHHHHHHHHHhc
Confidence            99999999999999886543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-40  Score=223.43  Aligned_cols=169  Identities=33%  Similarity=0.615  Sum_probs=155.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ....+|++++|..+||||||+.|+..+.|.+...+|++ ..+...+.+++..+.|.||||+|+++|.++.+.++++|+++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            34679999999999999999999999999888888885 44567788888899999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      |+|||+++.+||..+ +.|+..+.... +++-+.+||||+|+.+.+.          +..++++.++...+. .|+|+||
T Consensus        82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSA  149 (200)
T KOG0092|consen   82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSA  149 (200)
T ss_pred             EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEec
Confidence            999999999999999 99999998887 5778889999999988665          999999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchh
Q 029215          161 KTQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                      ++|.|++++|..|.+.+.....+
T Consensus       150 KTg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  150 KTGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             ccccCHHHHHHHHHHhccCcccc
Confidence            99999999999999999876544

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1e-39  Score=231.75  Aligned_cols=188  Identities=56%  Similarity=0.982  Sum_probs=156.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+||+++|.++||||||+.++..+.|.+.+.+|.+..+...+.+++..+.+++|||+|+++|..+++.+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            35899999999999999999999999988999999777766677888899999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++++|+.+...|...+....++.|+++||||+|+.+.....  ........+..++++.+++.++..+++++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            999999999999557888777766789999999999996542110  011122346778999999999855899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215          163 QQNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL  197 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      |.|++++|+++++.+..+...+  ++   .+|.+|
T Consensus       162 g~~v~e~f~~l~~~~~~~~~~~--~~---~~c~~~  191 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNPTPIK--DT---KSCVLL  191 (191)
T ss_pred             CCCHHHHHHHHHHHHhcccccc--CC---CCceeC
Confidence            9999999999999998764211  11   249886

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5.2e-39  Score=224.51  Aligned_cols=174  Identities=90%  Similarity=1.394  Sum_probs=152.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +|++++|.+++|||||+.++..+.|...+.+|.+..+...+.+++..+.+++|||+|+++|..+++.++++++++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999889999977777777788899999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV  166 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (197)
                      +++++||+.+...|+..+....++.|+++||||+|+.+........+..+.+..++++++++..+..+++||||++|.||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence            99999999975689998887777899999999999965432111223345578999999999999757999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 029215          167 KAVFDAAIKVVLQP  180 (197)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (197)
                      +++|+.+++.+.++
T Consensus       162 ~~~F~~~~~~~~~~  175 (176)
T cd04133         162 KAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.2e-39  Score=232.42  Aligned_cols=176  Identities=36%  Similarity=0.671  Sum_probs=152.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+||+++|.+|||||+|+.+|..+.|.+.+.+|....+...+.+++..+.++||||+|++.|..+++.+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            57899999999999999999999999999999998777777788899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++++|+.....|+..+....++.|+++|+||+|+........  .....+.+..++++++++.+++.+|++|||++
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            9999999999865889999988778899999999999864311000  01112458899999999999986799999999


Q ss_pred             CC-CHHHHHHHHHHHHcCC
Q 029215          163 QQ-NVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~-~i~~~~~~i~~~~~~~  180 (197)
                      |. |++++|..+++.+.+.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            97 8999999999887653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=8.6e-39  Score=225.73  Aligned_cols=181  Identities=29%  Similarity=0.518  Sum_probs=154.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|..|||||||+.++..+.+..++.++....+ ...+..++..+.+++|||+|++.|..++..+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            3579999999999999999999999988877777764433 455677888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||++++++|+.+ ..|+..+....++.|+++||||+|+.+.+.          +..++++.+++..++ +++++||++
T Consensus        84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~  151 (189)
T cd04121          84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC  151 (189)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence            99999999999999 889999988778999999999999976544          788999999999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCchhh---hhhhcccccccc
Q 029215          163 QQNVKAVFDAAIKVVLQPPKQK---KKKKKSHRACSI  196 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~~~---~~~~~~~~~c~~  196 (197)
                      |.||+++|+++++.+..+..+.   +++.=++++|-|
T Consensus       152 g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  188 (189)
T cd04121         152 NFNITESFTELARIVLMRHGRPPQSPPQNCSRNSCKI  188 (189)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCCCCccccCCcccc
Confidence            9999999999999887544322   233334444543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.7e-38  Score=222.15  Aligned_cols=176  Identities=36%  Similarity=0.714  Sum_probs=152.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|||||||++++..+.+.+.+.+|....+...+.+++..+.+++|||+|++.|..+++.+++++|++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            45789999999999999999999999999999999977777778889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++++|+.+...|+..+....++.|+++||||+|+.+.....  ......+.++.++++++++.+++.+|+||||+
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            9999999999997678999998887899999999999996421100  00112245889999999999996689999999


Q ss_pred             CCCC-HHHHHHHHHHHHcC
Q 029215          162 TQQN-VKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~-i~~~~~~i~~~~~~  179 (197)
                      +|.| |+++|+.+++.+..
T Consensus       163 ~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         163 QSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9998 99999999987543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.4e-38  Score=224.23  Aligned_cols=185  Identities=50%  Similarity=0.885  Sum_probs=158.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||+++|..+.+...+.++....+...+... +..+.+++|||||++++..+++.+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888888876665556665 67789999999999999999888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      |++++++|+.+...|+..+....++.|+++|+||+|+.....      ....+..+++.+++..++..+++++||++|.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            999999999986678887776667899999999999965321      12336778899999999876899999999999


Q ss_pred             HHHHHHHHHHHHcCCchhh-hhhhccccccccC
Q 029215          166 VKAVFDAAIKVVLQPPKQK-KKKKKSHRACSIL  197 (197)
Q Consensus       166 i~~~~~~i~~~~~~~~~~~-~~~~~~~~~c~~~  197 (197)
                      ++++|..+++.+.....+. ..+++++++|++|
T Consensus       155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            9999999999998776554 5677788889987

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6.9e-38  Score=222.09  Aligned_cols=186  Identities=42%  Similarity=0.721  Sum_probs=155.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|++|||||||++++..+.+.+.+.+|....+...+..++..+.+++|||+|++.+..++..++.++|++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            79999999999999999999999988888888777766677788889999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      +++++|+.+...|+..+....++.|+++|+||+|+.......  ........+..+++..+++..+..+++++||++|.|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  161 (189)
T cd04134          82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG  161 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence            999999988557888888777899999999999997653211  011112235677888888888755899999999999


Q ss_pred             HHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215          166 VKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL  197 (197)
Q Consensus       166 i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      ++++|+++++.+.....    ....+.+|+||
T Consensus       162 v~e~f~~l~~~~~~~~~----~~~~~~~~~~~  189 (189)
T cd04134         162 VNEAFTEAARVALNVRP----PHPHSSACTIA  189 (189)
T ss_pred             HHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence            99999999999875543    44455569987

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=7.9e-38  Score=219.37  Aligned_cols=173  Identities=35%  Similarity=0.709  Sum_probs=149.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++|||+|++.|..+.+.+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999999989999987777777888899999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++||+.+...|+..+....++.|+++||||+|+.+.....  ......+.++.++++++++.+++.+|++|||++|
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~  160 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS  160 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence            99999999996588999998888899999999999996421000  0011224588899999999999768999999999


Q ss_pred             CC-HHHHHHHHHHHHc
Q 029215          164 QN-VKAVFDAAIKVVL  178 (197)
Q Consensus       164 ~~-i~~~~~~i~~~~~  178 (197)
                      .+ |+++|..+++.++
T Consensus       161 ~~~v~~~F~~~~~~~~  176 (178)
T cd04131         161 EKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            95 9999999998655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.3e-38  Score=226.59  Aligned_cols=174  Identities=36%  Similarity=0.732  Sum_probs=151.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+|+|.+|||||||+.+|..+.|...+.||....+...+.+++..+.+.+|||+|++.|..+++.+++++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999987777778889999999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++++|+.+...|...+....++.|+++||||+|+..+....  .......+++.+++..+++..++.+|+||||+++.
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            9999999999778988887777899999999999997542111  11122345788999999999997699999999988


Q ss_pred             -CHHHHHHHHHHHHcCC
Q 029215          165 -NVKAVFDAAIKVVLQP  180 (197)
Q Consensus       165 -~i~~~~~~i~~~~~~~  180 (197)
                       ||+++|..++..+..+
T Consensus       162 ~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         162 RSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence             4999999999987654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-38  Score=214.73  Aligned_cols=165  Identities=33%  Similarity=0.565  Sum_probs=152.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+|++++|..+|||||||.|++.+.|...|.+|++.. .+..+.+.+..++|++|||+|||+|+.+.+.|+++++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45999999999999999999999999999999999655 46778889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-C-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++..||... ..|+..+.... + ++-+++||||.||.+.++          +..+++...+++++. .|+++||+
T Consensus       101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak  168 (221)
T KOG0094|consen  101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK  168 (221)
T ss_pred             EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence            9999999999999 89988887776 3 578899999999998776          899999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .|.||+.+|..|...+....
T Consensus       169 ~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  169 AGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             CCCCHHHHHHHHHHhccCcc
Confidence            99999999999998887653

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.9e-38  Score=225.16  Aligned_cols=178  Identities=37%  Similarity=0.633  Sum_probs=151.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||+++|..+.+...+.+|....+......++..+.+++|||||+++|..++..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            58999999999999999999999988888888766666677788888999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ++.++|+.+ ..|+..+....    ++.|+++|+||+|+.+...          +...++..+++.++. +++++||++|
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~  148 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN  148 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            999999998 77877765442    4789999999999976543          677778888888887 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCCchhh--------hhhhccccccccC
Q 029215          164 QNVKAVFDAAIKVVLQPPKQK--------KKKKKSHRACSIL  197 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~~~~--------~~~~~~~~~c~~~  197 (197)
                      .|++++|+++++.+..+++..        .++.|++++|++|
T Consensus       149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            999999999999876543222        3566667778876

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-38  Score=216.85  Aligned_cols=166  Identities=33%  Similarity=0.649  Sum_probs=154.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.++||||+|+.++..+.|...+..|.+-.+ ...+..++..+.+++|||+||++|+.+...|++.|++++
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~   89 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL   89 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence            4679999999999999999999999999999999996554 567888999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||+++..||+.+ ..|+..+.++. +++|.++||||+|+...+.          +..+.++++|..+|. +++|+||+
T Consensus        90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSAk  157 (207)
T KOG0078|consen   90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSAK  157 (207)
T ss_pred             EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcccc
Confidence            99999999999999 66999999999 4999999999999988665          999999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +|.||++.|-.+++.+..+.
T Consensus       158 ~~~NI~eaF~~La~~i~~k~  177 (207)
T KOG0078|consen  158 TNFNIEEAFLSLARDILQKL  177 (207)
T ss_pred             CCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999988544

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=220.87  Aligned_cols=182  Identities=35%  Similarity=0.582  Sum_probs=155.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|+|||||++++..+.+...+.+|....+...+.+++..+.+++|||||+++|..++..+++.++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            45699999999999999999999999988888888877777777788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++++|+.. ..|...+....  ++.|+++|+||+|+.+...          +..+++..+++.++. +++++||+
T Consensus        83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak  150 (189)
T PTZ00369         83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK  150 (189)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence            9999999999998 77877776554  4899999999999865443          667778888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchh---hhhhhccccccccC
Q 029215          162 TQQNVKAVFDAAIKVVLQPPKQ---KKKKKKSHRACSIL  197 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~---~~~~~~~~~~c~~~  197 (197)
                      +|.|++++|.++++.+.+..++   .++.+++++.|+||
T Consensus       151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  189 (189)
T PTZ00369        151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL  189 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence            9999999999999887655322   23566666779886

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6e-37  Score=214.63  Aligned_cols=172  Identities=55%  Similarity=0.986  Sum_probs=148.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||+.++..+.|.+.+.||....+...+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            47999999999999999999999999888999987777666778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++++|+.+...|+..+....++.|+++|+||+|+.......  ......+.+..++++++++..+..+++++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            99999999998557988887776789999999999986542211  1112235678899999999988558999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKVV  177 (197)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (197)
                      .|++++|+.+++.+
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-38  Score=211.32  Aligned_cols=170  Identities=29%  Similarity=0.578  Sum_probs=157.3

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCc
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      |+....+|+.++|..|||||+|+.+++...|.+.+..|.+..+ ...+.++++++.+++|||+||+.|++...++++.+.
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            6677889999999999999999999999999999999986555 467889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++|+|||++.+++|..+ ..|+..++++. ++.-++++|||+|+...+.          ++.++++.||++.|. .++++
T Consensus        81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET  148 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET  148 (216)
T ss_pred             ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence            99999999999999999 99999999886 8999999999999987765          999999999999997 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCch
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      ||+++.|++++|..+...+++..+
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~~q  172 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRKIQ  172 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.6e-38  Score=205.16  Aligned_cols=165  Identities=32%  Similarity=0.645  Sum_probs=152.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|+|||||+.+|..+.|.+..+.|++..+ ...+.+++..+.+.||||+||++|+.+.+++++.|.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            469999999999999999999999999888777786555 4678889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++.+++|..+ ..|++.+..+.  +++-.++|+||+|...++.          ++.+++..|++.+++ -++|+||+
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk  157 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK  157 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence            9999999999999 99999999988  5788899999999876655          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +.+|+..+|+.++..+.+.+
T Consensus       158 t~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  158 TRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             hhccHHHHHHHHHHHHhcCc
Confidence            99999999999999998765

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=6.2e-37  Score=218.15  Aligned_cols=162  Identities=31%  Similarity=0.572  Sum_probs=143.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +.|+++|..|||||||++++..+.|...+.+|.+. .....+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888888754 44566788888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~  163 (197)
                      |++++++|+.+ ..|+..+.... ++.|+++|+||+|+...+.          +...+++++++.. +. .++++||++|
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg  148 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN  148 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence            99999999999 78988887765 5899999999999976544          7788889999886 55 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      .||+++|+++++.+...
T Consensus       149 ~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         149 FNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.7e-37  Score=207.23  Aligned_cols=170  Identities=31%  Similarity=0.560  Sum_probs=153.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +..+||.++|.+|+|||||++++..+.|...+..|++ +.....+.++++.+.+++|||+||++|+++.-.+++++|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            4569999999999999999999999999999999995 455788899999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++||++++++|+.+ ..|...+..+.     ...|.+|+|||+|+....        .+.++.+.++++++..|..||||
T Consensus        87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfE  157 (210)
T KOG0394|consen   87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFE  157 (210)
T ss_pred             EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEE
Confidence            99999999999999 99988776665     268999999999997632        24589999999999999889999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCch
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +|||+..||++.|..+.+.++....
T Consensus       158 tSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  158 TSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             ecccccccHHHHHHHHHHHHHhccc
Confidence            9999999999999999999887654

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1e-36  Score=212.91  Aligned_cols=164  Identities=25%  Similarity=0.508  Sum_probs=146.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++|||||++.+..++..++..+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            58999999999999999999999999888888887777767788888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++.+|..+ ..|...+....  +++|+++|+||+|+.....          ++.+++..+++..++ ++++|||++|
T Consensus        82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~  149 (172)
T cd04141          82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR  149 (172)
T ss_pred             ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence            99999999999 66877776543  5899999999999976543          788889999999987 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCCc
Q 029215          164 QNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~  181 (197)
                      .||+++|+++++.+.+..
T Consensus       150 ~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         150 HYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999877543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.2e-38  Score=203.51  Aligned_cols=163  Identities=33%  Similarity=0.630  Sum_probs=151.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      -++.+|+|.+|+|||+|+.++-.+.|...|..|++..+ ...+.++|..+.++|||++|+++|+.+...+++..+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            46789999999999999999999999999999986554 56788899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ||+++.+||... ..|++.++..++.+|-++||||.|..+.+.          +..++++.++..+++ .+||+||+++.
T Consensus        88 YDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~~  155 (198)
T KOG0079|consen   88 YDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKENE  155 (198)
T ss_pred             EECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhcc
Confidence            999999999999 999999999999999999999999987665          899999999999998 99999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 029215          165 NVKAVFDAAIKVVLQP  180 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~~  180 (197)
                      +++.+|.-|.+.+.+.
T Consensus       156 NvE~mF~cit~qvl~~  171 (198)
T KOG0079|consen  156 NVEAMFHCITKQVLQA  171 (198)
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999999988876544

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=3.5e-36  Score=210.61  Aligned_cols=171  Identities=65%  Similarity=1.095  Sum_probs=147.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||+.++..+.+.+.+.+|....+...+..++..+.+++|||+|++.+..+++.++.++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            37999999999999999999999999888888887776667778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++++|..+...|+..+....++.|+++|+||+|+.+.....  ........+..++++.+++.++..+++++||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            99999999998667888887766789999999999996432100  1111234578899999999998669999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKV  176 (197)
Q Consensus       164 ~~i~~~~~~i~~~  176 (197)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.4e-36  Score=215.45  Aligned_cols=164  Identities=29%  Similarity=0.470  Sum_probs=142.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+++|||||++.+..+++.++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999998888888886443 4456666 7789999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ||++++++|+.+ ..|+..+....     .++|+++|+||+|+.+...          +..+++.++++..+..+++++|
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S  149 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS  149 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence            999999999998 78877765432     4789999999999975333          6788899999999855899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCc
Q 029215          160 SKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      |++|.|++++|+++++.+.+..
T Consensus       150 ak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         150 AKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999887654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.8e-35  Score=205.70  Aligned_cols=162  Identities=30%  Similarity=0.620  Sum_probs=142.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|||||||++++..+.+...+.+|....+ ...+..++..+.+++||+||++.+..++..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888877775544 34566788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.....          +..+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  149 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG  149 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 88887776654 6899999999999976544          678889999998887 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .|++++|.++++.+.+
T Consensus       150 ~~i~e~f~~l~~~~~~  165 (166)
T cd04122         150 ENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2e-35  Score=211.02  Aligned_cols=164  Identities=30%  Similarity=0.568  Sum_probs=144.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++|+++|++|||||||++++..+.+.+.+.+|.... ....+..++..+.+.+||+||++.+..++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            56999999999999999999999998887777877533 34566677878899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |||++++++|..+ ..|+..+....+..|+++|+||+|+.+...          +..+++..+++..+. +++++||++|
T Consensus        85 v~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  152 (199)
T cd04110          85 VYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKEN  152 (199)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            9999999999998 789888887778899999999999976543          667888889888886 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      .|++++|+++.+.+.+.
T Consensus       153 ~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         153 INVEEMFNCITELVLRA  169 (199)
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999988653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.9e-35  Score=205.50  Aligned_cols=171  Identities=61%  Similarity=1.062  Sum_probs=147.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                      |+|+|++|||||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888888887777777778888899999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215           89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV  166 (197)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (197)
                      ++++|+.+...|+..+....++.|+++|+||+|+.......  ........++.+++.++++..+..+++++||++|.|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            99999998667999888877899999999999997532211  1122234477888999999998768999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 029215          167 KAVFDAAIKVVLQ  179 (197)
Q Consensus       167 ~~~~~~i~~~~~~  179 (197)
                      +++|+.+++.+.+
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2e-35  Score=213.40  Aligned_cols=161  Identities=28%  Similarity=0.456  Sum_probs=140.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECC-eEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|||||||+++|..+.+...+.+|.+ +.+...+.+++ ..+.+++|||+|++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888888885 44455666654 578999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ||++++++|..+ ..|+..+....    .+.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA  148 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA  148 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999998 78988887664    2568999999999975443          678888999999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|+|++++|+++++.+..
T Consensus       149 ktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3e-35  Score=203.92  Aligned_cols=159  Identities=30%  Similarity=0.599  Sum_probs=140.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988888888876666777788888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++++++.. ..|...+....  ++.|+++|+||+|+.+...          +..+++..+++.++. +++++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (163)
T cd04136          82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKI  149 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCC
Confidence            9999999988 77777776543  5899999999999976443          566778888888885 99999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKVV  177 (197)
Q Consensus       165 ~i~~~~~~i~~~~  177 (197)
                      |++++|+++++.+
T Consensus       150 ~v~~l~~~l~~~~  162 (163)
T cd04136         150 NVDEVFADLVRQI  162 (163)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.9e-35  Score=204.25  Aligned_cols=161  Identities=30%  Similarity=0.578  Sum_probs=141.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++..+.+.+.+.+|+...+...+..++..+.+++|||||++.+..++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            37999999999999999999999888888888887777777788888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++..+++.. ..|...+....  ++.|+++|+||+|+.+...          +..+++..+++.++. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (164)
T cd04175          81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence            99999999998 67766665433  6899999999999976543          566777888888886 9999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029215          164 QNVKAVFDAAIKVVL  178 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~  178 (197)
                      .|++++|.++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4e-35  Score=207.92  Aligned_cols=178  Identities=29%  Similarity=0.543  Sum_probs=149.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999998776777775433 456677788899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |+++++++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..+++..+. +++++||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~  148 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI  148 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999999 77988887765 4789999999999976543          677888888888887 99999999999


Q ss_pred             CHHHHHHHHHHHHcCCchhh-------hhhhcccccccc
Q 029215          165 NVKAVFDAAIKVVLQPPKQK-------KKKKKSHRACSI  196 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~~~-------~~~~~~~~~c~~  196 (197)
                      |++++|+++++.+.++....       +.+-++++.|+|
T Consensus       149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (188)
T cd04125         149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFI  187 (188)
T ss_pred             CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCccc
Confidence            99999999999987543222       234555666876

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=8.2e-35  Score=202.59  Aligned_cols=163  Identities=30%  Similarity=0.627  Sum_probs=143.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|++|+|||||++++..+.+.+.+.++....+ ...+..++..+.+++||+||++.+..++..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            569999999999999999999999999888888875443 3456678888999999999999999888889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++++|..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++..++. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA  149 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 77988887765 5899999999999976543          567788888888887 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.|++++|+++++.+..
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-35  Score=203.04  Aligned_cols=165  Identities=34%  Similarity=0.583  Sum_probs=152.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +-|||+++|.+++|||-|+.|+..+.|..+..+|++..+ ...+.++++.+..+||||+||++|+.....+++.+.++++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            569999999999999999999999999999889986554 5678899999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++.+.+|+.+ ..|+..++.+. +++++++||||+||.+-+.          +..++++.+++..+. .++++||.+
T Consensus        93 VYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl~  160 (222)
T KOG0087|consen   93 VYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSALD  160 (222)
T ss_pred             EEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEecccc
Confidence            9999999999988 99999999999 7999999999999987654          899999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCc
Q 029215          163 QQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~  181 (197)
                      +.++++.|..++..+.+.-
T Consensus       161 ~tNVe~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  161 ATNVEKAFERVLTEIYKIV  179 (222)
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence            9999999999998876543

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-35  Score=192.07  Aligned_cols=166  Identities=32%  Similarity=0.641  Sum_probs=151.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeE-EEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .-+|++++|...+|||||+.++.+..|...+..|.+..+.. .+..+...+.+++|||+|+++++.+...++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            35799999999999999999999999988888888666654 34445677999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +||+++.+||..+ +.|...+..++ .+.|+++|+||||+..++.          ++.+.+++++.++|. .+||+||+.
T Consensus       100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~  167 (193)
T KOG0093|consen  100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE  167 (193)
T ss_pred             EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence            9999999999999 99999999888 7999999999999998876          899999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCch
Q 029215          163 QQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +.+++.+|+.+...+.++..
T Consensus       168 NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  168 NINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             cccHHHHHHHHHHHHHHHhh
Confidence            99999999999998876653

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.3e-34  Score=200.43  Aligned_cols=158  Identities=34%  Similarity=0.628  Sum_probs=140.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      ++|+++|++|+|||||++++..+.+.+.+.+|.+.. ....+..++..+.+++||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            589999999999999999999999988778887543 3456777888899999999999999999989999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |++++++|..+ ..|+..+.... .+.|+++|+||+|+.....          +..+++..+++.++. +++++||++|.
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 78988887665 4799999999999976544          678899999999886 99999999999


Q ss_pred             CHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKV  176 (197)
Q Consensus       165 ~i~~~~~~i~~~  176 (197)
                      |++++|.+|++.
T Consensus       149 ~v~~~f~~l~~~  160 (161)
T cd04117         149 NIKESFTRLTEL  160 (161)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.9e-34  Score=200.36  Aligned_cols=161  Identities=33%  Similarity=0.671  Sum_probs=140.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998887778775433 344556777799999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||++|.
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI  149 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 88988887766 5889999999999976543          567788888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029215          165 NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (197)
                      |++++|+++.+.+.+
T Consensus       150 gv~~l~~~l~~~~~~  164 (165)
T cd01865         150 NVKQVFERLVDIICD  164 (165)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.3e-34  Score=205.62  Aligned_cols=163  Identities=36%  Similarity=0.678  Sum_probs=140.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|++|||||||++++..+.+. +.+.++....+ ...+.+++..+.+++|||||++.+...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 35666665444 34567788889999999999999988888889999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||++++++++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++..+++.++. +++++||++|
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~  148 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG  148 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999998 77888887776 4899999999999975443          566788889888887 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCCc
Q 029215          164 QNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~  181 (197)
                      .|++++|.++++.+....
T Consensus       149 ~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         149 LNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999887663

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=4.7e-34  Score=200.02  Aligned_cols=172  Identities=55%  Similarity=1.023  Sum_probs=147.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877776677788888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++.+|+.....|...+....++.|+++|+||+|+.+.....  ........++.++++.+++..+..+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            9999999998667888887666799999999999986542110  11122235678889999999997789999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029215          165 NVKAVFDAAIKVVL  178 (197)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (197)
                      |++++|+.+++.+.
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.3e-34  Score=208.08  Aligned_cols=163  Identities=26%  Similarity=0.450  Sum_probs=141.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.+|||||||++++..+.+...+.+|.+ +.....+..++..+.+.+|||+|++.|..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4679999999999999999999999999888888875 344455666777899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||+++++++..+ ..|+..+....++.|+++||||+|+....           +..+++ ++++..+. +|+++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999998 88999888777899999999999996432           334444 67777776 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|.++++.+...
T Consensus       157 ~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            999999999999988754

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.1e-34  Score=208.70  Aligned_cols=169  Identities=28%  Similarity=0.434  Sum_probs=132.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.++||||||+++|..+.+.. +.+|.+..+.. .  ....+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~-~--~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL-K--QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE-E--EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999998864 45555433221 1  1245789999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc---------ccCCCCCccccHHHHHHHHHHhCC-----
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF---------FIDHPGAVPITTAQGEELRKLIGS-----  152 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----  152 (197)
                      ++++++|..+...|........++.|+++|+||+|+.+....         .......+.+..++++.+++..+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            999999999944444443333368999999999999752110         011112456889999999998762     


Q ss_pred             --------CeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          153 --------PAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       153 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                              .+|+|+||++|.||+++|..+++.+..
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                    379999999999999999999987763

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.5e-34  Score=203.62  Aligned_cols=163  Identities=36%  Similarity=0.633  Sum_probs=140.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC----------CeEEEEEEEEcCCcccccccccC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~~   73 (197)
                      +.+||+++|++|||||||++++..+.+.+.+.+|....+ ...+...          +..+.+++||+||++.+..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            569999999999999999999999999888888775433 3333332          45688999999999999999999


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +++++|++++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++.++++.++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~  151 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG  151 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence            99999999999999999999999 78988887654  5889999999999976543          67788899999998


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      . +++++||++|.|++++|+++.+.+.+
T Consensus       152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         152 I-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            7 99999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=204.07  Aligned_cols=179  Identities=65%  Similarity=1.096  Sum_probs=164.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+|++|+|...+|||+|+..+..+.|+..|.||..+.+...+.++ +..+.+.+|||+||++|+.+++..+.++|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35689999999999999999999999999999999999999999995 99999999999999999999988999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc--ccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|++.+++||+++...|+..+..++|+.|+++||+|.||..+...  ...+.....+..++++.++++.|...|+||||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            9999999999999999999999999999999999999999854322  23444567789999999999999889999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCch
Q 029215          161 KTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +++.|++++|+..+..++..++
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999998875

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.2e-34  Score=199.38  Aligned_cols=161  Identities=32%  Similarity=0.656  Sum_probs=141.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|||||||++++..+.+...+.++.+.. ....+...+..+.+++||+||++.+..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            5899999999999999999999988877777776543 345666788888999999999999999888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||+++++++..+ ..|+..+.... ++.|+++|+||+|+.....          +..+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA  149 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            999999999999 77988887766 5899999999999876543          677888999998887 9999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029215          164 QNVKAVFDAAIKVVL  178 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~  178 (197)
                      .|++++|.++++.+.
T Consensus       150 ~~v~~~~~~i~~~~~  164 (166)
T cd01869         150 TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=6.1e-34  Score=199.31  Aligned_cols=169  Identities=53%  Similarity=0.960  Sum_probs=144.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +|++++|++|+|||||+.++..+.+...+.+|..+.+...+.+++..+.+++||+||++.+..++..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999999999998888888877777778888888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++++|+.....|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++..+..+++++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            9999999998567888887665789999999999996432110  11112345778899999999987789999999999


Q ss_pred             CHHHHHHHHHH
Q 029215          165 NVKAVFDAAIK  175 (197)
Q Consensus       165 ~i~~~~~~i~~  175 (197)
                      |++++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.6e-34  Score=199.46  Aligned_cols=160  Identities=33%  Similarity=0.620  Sum_probs=140.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|||||||++++..+.+...+.++..+.+......++..+.+++|||||++++..++..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999988888888877777777788888999999999999999999889999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      +++++++..+ ..|...+....  .+.|+++|+||+|+.+...          +..+++..+++..+. +++++||++|.
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence            9999999998 77766665443  4789999999999976543          567788888888886 99999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029215          165 NVKAVFDAAIKVVL  178 (197)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (197)
                      |++++|+++++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=5e-34  Score=203.20  Aligned_cols=179  Identities=23%  Similarity=0.409  Sum_probs=140.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCccccccc--------ccCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~~   77 (197)
                      +||+|+|.+|||||||++++..+.+...+.++.. ..+...+..++..+.+++|||||.+.+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888875 334455667888899999999997655322        2234688


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCC
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGS  152 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (197)
                      +|++++|||++++++++.+ ..|...+...    .+++|+++|+||+|+...+.          +..++++.++. .+++
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~  149 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC  149 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence            9999999999999999988 7777666554    25799999999999976443          55666777655 4565


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcCCchhhh-----hhhccccccccC
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK-----KKKKSHRACSIL  197 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~-----~~~~~~~~c~~~  197 (197)
                       +++++||++|.|++++|+.+++.+..+.+...     +.---+.+|+||
T Consensus       150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (198)
T cd04142         150 -GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM  198 (198)
T ss_pred             -cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence             99999999999999999999999887654433     222334559887

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=4.3e-34  Score=201.22  Aligned_cols=167  Identities=28%  Similarity=0.546  Sum_probs=139.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|||||||++++..+.+.+.+.+|.+.. ....+..++..+.+++||++|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            589999999999999999999999988888888544 3456778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |+++++++..+ ..|+..+....+ ..| ++|+||+|+.....    ..... ...++++++++..+. +++++||++|.
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~----~~~~~-~~~~~~~~~a~~~~~-~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP----PEEQE-EITKQARKYAKAMKA-PLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc----chhhh-hhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 889888876553 456 68899999964210    00011 234677888888886 99999999999


Q ss_pred             CHHHHHHHHHHHHcCCc
Q 029215          165 NVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~~~  181 (197)
                      |++++|+++.+.+..-+
T Consensus       153 ~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         153 NVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             CHHHHHHHHHHHHHhcC
Confidence            99999999999887644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.1e-34  Score=198.91  Aligned_cols=160  Identities=31%  Similarity=0.583  Sum_probs=139.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|+|||||++++..+.+.+.+.+|....+...+..++..+.+++|||||++.|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888876666667777888889999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++.++.++ ..|...+....  .+.|+++|+||+|+.....          +...++..+++.++. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04176          81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            99999999998 77877776543  5899999999999965433          566677888888886 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKVV  177 (197)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (197)
                      .|++++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd04176         149 TMVNELFAEIVRQM  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.4e-34  Score=197.84  Aligned_cols=161  Identities=30%  Similarity=0.524  Sum_probs=136.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.+|....+ ...+..++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999888777888875433 344556777899999999999999988888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      |+++++++..+ ..|+..+.....+.|+++|+||+|+....           +. .+..++++..+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~  146 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN  146 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            99999999998 78998888877789999999999997322           22 334566666665 899999999999


Q ss_pred             HHHHHHHHHHHHcCCc
Q 029215          166 VKAVFDAAIKVVLQPP  181 (197)
Q Consensus       166 i~~~~~~i~~~~~~~~  181 (197)
                      ++++|+++++.+.+.+
T Consensus       147 v~~~f~~l~~~~~~~~  162 (166)
T cd00877         147 FEKPFLWLARKLLGNP  162 (166)
T ss_pred             hHHHHHHHHHHHHhcc
Confidence            9999999999887543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=4.9e-34  Score=198.32  Aligned_cols=158  Identities=27%  Similarity=0.514  Sum_probs=136.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.++....+...+..+...+.+++|||||++++..++..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988888888766666666667778999999999999999888888899999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ++++++++.+ ..|...+....    ++.|+++|+||+|+.....          +..+++..++..++. +++++||++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~  149 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT  149 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence            9999999988 77766665532    5799999999999976433          667778888888887 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029215          163 QQNVKAVFDAAIKV  176 (197)
Q Consensus       163 ~~~i~~~~~~i~~~  176 (197)
                      |.|++++|++|++.
T Consensus       150 g~~v~~~f~~l~~~  163 (165)
T cd04140         150 NHNVQELFQELLNL  163 (165)
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999854

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=5.8e-34  Score=197.06  Aligned_cols=159  Identities=36%  Similarity=0.626  Sum_probs=139.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+++|||+|++.+..++..++++++++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            37999999999999999999999998888888887767777778888888999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++.++..+ ..|...+....  .+.|+++|+||+|+....           ....++..+++..+. +++++||++|
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (162)
T cd04138          81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR  147 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence            99999999988 66766665543  489999999999996532           567778888888887 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKVV  177 (197)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (197)
                      .|++++|+++++.+
T Consensus       148 ~gi~~l~~~l~~~~  161 (162)
T cd04138         148 QGVEEAFYTLVREI  161 (162)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=8.4e-34  Score=196.35  Aligned_cols=159  Identities=30%  Similarity=0.521  Sum_probs=135.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|||||||++++..+.+.+.+.++.. ..+......++..+.+++|||+|++.|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988777766653 334445667788899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      |++++.++... ..|+..+....++.|+++|+||+|+...             ...+...+++..+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g  145 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN  145 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999988 8898888777778999999999998432             12345566777776 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 029215          166 VKAVFDAAIKVVLQP  180 (197)
Q Consensus       166 i~~~~~~i~~~~~~~  180 (197)
                      ++++|+.+++.+.+.
T Consensus       146 v~~l~~~l~~~~~~~  160 (161)
T cd04124         146 VVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1.7e-33  Score=199.25  Aligned_cols=186  Identities=46%  Similarity=0.765  Sum_probs=150.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .|++|+|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+....+..+..+++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988887777777666666666778888889999999999888777777889999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV  166 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (197)
                      +++.++++.+...|+..+....++.|+++|+||+|+.+.............+..++++.+++..+..+++++||++|.|+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  161 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV  161 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence            99999999986679998887777899999999999864321111111234456778889999998778999999999999


Q ss_pred             HHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215          167 KAVFDAAIKVVLQPPKQKKKKKKSHRACSIL  197 (197)
Q Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      +++|+++.+.+..-+.     +-++..|||.
T Consensus       162 ~~~f~~l~~~~~~~~~-----~~~~~~~~~~  187 (187)
T cd04129         162 DDVFEAATRAALLVRK-----SEPGAGCCII  187 (187)
T ss_pred             HHHHHHHHHHHhcccC-----cccccCcccC
Confidence            9999999988755443     3345567763

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.5e-34  Score=198.44  Aligned_cols=159  Identities=42%  Similarity=0.845  Sum_probs=146.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      ||+++|+++||||||+++|..+.+.+.+.+|. .+.+...+..++..+.+++||++|++.+..+....++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999898888 66667788889999999999999999998888888999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      +++++++..+ ..|+..+....+ +.|+++++||.|+.+.+.          ++.++++++++.++. +|+++||+++.|
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  148 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN  148 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence            9999999999 799999999886 799999999999987544          888999999999995 999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 029215          166 VKAVFDAAIKVVL  178 (197)
Q Consensus       166 i~~~~~~i~~~~~  178 (197)
                      +.++|..+++.+.
T Consensus       149 v~~~f~~~i~~i~  161 (162)
T PF00071_consen  149 VKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=7e-34  Score=197.19  Aligned_cols=160  Identities=34%  Similarity=0.617  Sum_probs=139.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+++|||||++++..++..+++++|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999999888888888877666666778888889999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++.++... ..|...+....  .+.|+++|+||+|+.....          +...++.++++..+. +++++||++|
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (164)
T cd04145          82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR  149 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence            99999999998 77776665543  5899999999999976443          566778888888887 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKVV  177 (197)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (197)
                      .|++++|+++++.+
T Consensus       150 ~~i~~l~~~l~~~~  163 (164)
T cd04145         150 LNVDKAFHDLVRVI  163 (164)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.5e-33  Score=200.67  Aligned_cols=166  Identities=32%  Similarity=0.532  Sum_probs=141.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|+|||||+++|..+.+.. .+.+|....+ ...+..++..+.+++||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 6777775544 45677888889999999999999999888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ||++++++++.. ..|+..+....++.|+++|+||+|+.....      ....+...++.+++..++. +++++||++|.
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999988 788888877667899999999999864321      1223556778888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 029215          165 NVKAVFDAAIKVVLQP  180 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~~  180 (197)
                      |++++|+++++.+.+.
T Consensus       153 gv~~l~~~i~~~~~~~  168 (193)
T cd04118         153 NVDELFQKVAEDFVSR  168 (193)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=5.5e-34  Score=197.40  Aligned_cols=158  Identities=34%  Similarity=0.588  Sum_probs=138.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC--CeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +||+++|.+++|||||++++..+.+...+.++....+ ...+.+.  +..+.+++|||||++++..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999988888788875443 4455555  677899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |||+++++++..+ ..|+..+....++.|+++|+||+|+.....          +..+++..+++.++. +++++||++|
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD  148 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            9999999999988 889888877777999999999999976543          677888999999998 9999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKV  176 (197)
Q Consensus       164 ~~i~~~~~~i~~~  176 (197)
                      .|++++|++|.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (162)
T cd04106         149 FNVTELFEYLAEK  161 (162)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.5e-33  Score=200.04  Aligned_cols=168  Identities=43%  Similarity=0.671  Sum_probs=132.6

Q ss_pred             eeEEEEECCCCCcHHHHHH-HHhhC-----CCCCCCCCcee--eceeEE--------EEECCeEEEEEEEEcCCcccccc
Q 029215            6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~~   69 (197)
                      .+||+++|.+|||||||+. ++..+     .+...+.||..  +.+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 55543     34556777773  333222        24678899999999999975  3


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc---------CCCCCccccH
Q 029215           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI---------DHPGAVPITT  140 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~---------~~~~~~~~~~  140 (197)
                      +...+++++|++++|||++++.+|+.+...|+..+....++.|+++|+||+|+........         .....+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4556889999999999999999999985579888887767899999999999964211000         0011356889


Q ss_pred             HHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          141 AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ++++++++.+++ +|+||||++|.||+++|+.+++.
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999998 99999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.1e-33  Score=196.48  Aligned_cols=161  Identities=31%  Similarity=0.544  Sum_probs=139.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+++|++|+|||||++++..+.+...+.++.... ....+..++..+.+++||+||++.+..++..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988877777776433 34566678877899999999999999888889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||+++++++..+ ..|+..+.... ++.|+++|+||+|+...+.          ...+++..+++..+...++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE  150 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence            9999999999988 88988887654 5899999999999976543          6777888999988876889999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029215          163 QQNVKAVFDAAIKV  176 (197)
Q Consensus       163 ~~~i~~~~~~i~~~  176 (197)
                      |.|++++|+++.+.
T Consensus       151 ~~~v~~~~~~l~~~  164 (165)
T cd01864         151 SQNVEEAFLLMATE  164 (165)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.2e-33  Score=196.68  Aligned_cols=160  Identities=23%  Similarity=0.541  Sum_probs=139.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.++....+ ...+..++..+.+++|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998888888875444 456777888899999999999999988888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      |+++++++... ..|+..+....      .+.|+++|+||+|+.+...          +..++.+.++...+. +++++|
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  148 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS  148 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            99999999988 78888877654      3689999999999975332          577788888888886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHc
Q 029215          160 SKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~  178 (197)
                      |++|.|++++|++|++.+.
T Consensus       149 a~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         149 ACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=3.8e-33  Score=195.55  Aligned_cols=171  Identities=50%  Similarity=0.926  Sum_probs=144.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .||+++|++|||||||++++..+.+.+.+.++....+...+.+++..+.+.+|||+|++.+...+...+.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888877666677788888999999999999999888888999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++++++.+...|...+....++.|+++|+||+|+.+.....  ........+...++++++...+..+++++||++|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            9999999988667888887766789999999999986542211  11111234567788999998887689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKVV  177 (197)
Q Consensus       165 ~i~~~~~~i~~~~  177 (197)
                      |++++|+++.+.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=3e-33  Score=195.21  Aligned_cols=162  Identities=34%  Similarity=0.627  Sum_probs=139.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +...+||+++|.++||||||++++..+.+...+.++.+.. ....+..++..+.+++||+||++++..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            4567999999999999999999999988877776766443 345667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++|||+++++++..+ ..|...+....     ++.|+++|+||+|+... .          +..++++++++..+..+++
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-Q----------VSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccccc-c----------cCHHHHHHHHHHCCCCeEE
Confidence            999999999999998 77876665432     36899999999998632 2          5778889999988866899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ++||++|.|+.++|+++++.
T Consensus       150 e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         150 ETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.8e-33  Score=202.39  Aligned_cols=163  Identities=33%  Similarity=0.557  Sum_probs=140.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|.+. .+...+.+ ++..+.+++|||+|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999887777777743 33445555 4667899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++++|..+ ..|+..+....  ...|+++|+||+|+.....          +..+++.++++.++. +++++||+
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  149 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR  149 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence            9999999999999 77888776654  3578899999999976544          778888999999996 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|++.+.+.
T Consensus       150 ~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         150 TGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999987654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=201.56  Aligned_cols=169  Identities=30%  Similarity=0.577  Sum_probs=145.9

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCc
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      |...+.+||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+++|||+|++.+..++..++..+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            6677789999999999999999999999988777777764333 456677888889999999999999988888999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++++|||+++++++..+ ..|+..+.... ++.|+++++||+|+.....          +..++++++++.++. +++++
T Consensus        81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~  148 (210)
T PLN03108         81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA  148 (210)
T ss_pred             EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence            99999999999999988 77877666554 5899999999999976543          678889999999987 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCc
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ||+++.|++++|+++++.+.++.
T Consensus       149 Sa~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        149 SAKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999887543

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=190.84  Aligned_cols=165  Identities=31%  Similarity=0.542  Sum_probs=145.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+++.|+|.+-+|||+|++.++.+.+.+-.+||.+.. +...+.. ++..+.+++|||+||++|+++.++++++.-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            57999999999999999999999999998888988544 3433433 678899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      +|||+++++||+.+ +.|+.....+.  |..++ .+||+|+|+...+.          ++.++++.+++..|+ .|+|+|
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS  154 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS  154 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence            99999999999999 89987766554  66666 68999999987665          999999999999999 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCc
Q 029215          160 SKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      |++|.|+++.|+.+.+.+....
T Consensus       155 ak~g~NVeEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIFQAI  176 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999998876543

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-34  Score=187.63  Aligned_cols=165  Identities=30%  Similarity=0.552  Sum_probs=151.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .-+|++++|+.|+|||+|+.++..+.+.++...|++..+ +..+.+.++.+.++||||+||++|++..+.+++.|.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            458999999999999999999999999998888886665 5567788999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++++|..+ ..|+.-.+... +++-+++++||.|+.++++          ++..++..|+++... .+.++||++
T Consensus        88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~T  155 (214)
T KOG0086|consen   88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALT  155 (214)
T ss_pred             EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccc
Confidence            9999999999999 99998888877 6888899999999988877          999999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCc
Q 029215          163 QQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~  181 (197)
                      |+++++.|-...++++.+.
T Consensus       156 GeNVEEaFl~c~~tIl~kI  174 (214)
T KOG0086|consen  156 GENVEEAFLKCARTILNKI  174 (214)
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence            9999999999888887654

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.9e-33  Score=193.67  Aligned_cols=159  Identities=31%  Similarity=0.566  Sum_probs=138.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.++.... ....+.+++..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            589999999999999999999998877777776443 3455667788899999999999999988889999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |+++++++..+ ..|+..+.... ++.|+++++||+|+.....          +..+++..+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 78888776554 6899999999999976443          678888999999985 99999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKVV  177 (197)
Q Consensus       165 ~i~~~~~~i~~~~  177 (197)
                      |++++|+++++.+
T Consensus       149 ~i~~~~~~~~~~~  161 (161)
T cd04113         149 NVEEAFLKCARSI  161 (161)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=4.1e-33  Score=193.62  Aligned_cols=161  Identities=34%  Similarity=0.582  Sum_probs=140.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.++||||||++++..+.+...+.++.... ....+..++..+.+++||+||++++..++..++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999998877777777543 45567778888899999999999999998889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.++..+ ..|+..+....+ +.|+++|+||+|+...+.          +..++.+.+++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD  149 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999998 789888877764 699999999999976443          677788888888776 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029215          163 QQNVKAVFDAAIKVV  177 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (197)
                      |.|++++|+++++.+
T Consensus       150 ~~~v~~l~~~l~~~i  164 (165)
T cd01868         150 GTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.9e-33  Score=194.55  Aligned_cols=162  Identities=31%  Similarity=0.543  Sum_probs=138.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      ||+++|.+|||||||++++..+.+.+.+.+|....+ ...+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999988988886444 4567778888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhh-CC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHY-AP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~-~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      +++++++... ..|+..+... .+ +.|+++|+||+|+.+...        .....+++..+++.++. +++++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~  151 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE  151 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            9999999998 7888876544 33 578999999999865321        11346677888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029215          165 NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (197)
                      |++++|+.+++.+..
T Consensus       152 ~v~~lf~~l~~~~~~  166 (170)
T cd04108         152 NVREFFFRVAALTFE  166 (170)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.5e-33  Score=202.38  Aligned_cols=163  Identities=30%  Similarity=0.553  Sum_probs=143.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|++|||||||+++|..+.+...+.+|.+.. ....+.+++..+.+++||++|++++..++..++++++++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            56899999999999999999999998877777777544 45677788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.....          +..++++.++..++. +++++||++
T Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~  158 (216)
T PLN03110         91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE  158 (216)
T ss_pred             EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999988 88988887765 4899999999999976544          677888889888887 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.|++++|+++++.+.+
T Consensus       159 g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        159 ATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999987743

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=5.7e-33  Score=193.48  Aligned_cols=163  Identities=28%  Similarity=0.574  Sum_probs=141.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+.. ....+..++....+.+||+||++++..+...+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988877766665433 34556677878899999999999999888889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||+++++++..+ ..|+..+.... ++.|+++|+||.|+.....          +..++++.++...+. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT  150 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78988887765 6899999999999975433          677888889888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      +.|++++|.++.+.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=8.3e-33  Score=192.67  Aligned_cols=161  Identities=31%  Similarity=0.584  Sum_probs=141.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.|..++..+++.++++++|||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            78999999999999999999999988888888876666677788888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++++++.. ..|...+....  .+.|+++++||+|+.+...          ...+++..+++.++..+++++||+++.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~~  150 (168)
T cd04177          82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRT  150 (168)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence            9999999998 77777665533  5899999999999976543          567778888888885599999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029215          165 NVKAVFDAAIKVVL  178 (197)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (197)
                      |++++|+++.+.+.
T Consensus       151 ~i~~~f~~i~~~~~  164 (168)
T cd04177         151 NVDEVFIDLVRQII  164 (168)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.7e-33  Score=197.98  Aligned_cols=155  Identities=26%  Similarity=0.473  Sum_probs=134.7

Q ss_pred             ECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH
Q 029215           12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK   90 (197)
Q Consensus        12 ~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (197)
                      +|.++||||||++++..+.+...+.+|.+. .....+..++..+.+++|||+|+++|..++..++++++++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999998888888888854 4455677788889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215           91 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus        91 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (197)
                      .+|..+ ..|+..+....+++|+++|+||+|+....           +..+. .++++..++ +|++|||++|.||+++|
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F  146 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF  146 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence            999998 78999898877799999999999985421           33333 467777777 89999999999999999


Q ss_pred             HHHHHHHcCC
Q 029215          171 DAAIKVVLQP  180 (197)
Q Consensus       171 ~~i~~~~~~~  180 (197)
                      +++++.+.+.
T Consensus       147 ~~l~~~i~~~  156 (200)
T smart00176      147 LWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhc
Confidence            9999988664

Ran is involved in the active transport of proteins through nuclear pores.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=7.3e-33  Score=190.78  Aligned_cols=155  Identities=27%  Similarity=0.383  Sum_probs=128.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|||||||+.++..+.|.+.+.++. ..+...+.+++..+.+++||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999988877665553 34456678888889999999999975     235678999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++++|+.+ ..|+..+....  ++.|+++|+||+|+....        .+.+..++++++++..+..+|++|||++|.
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            9999999998 67888887665  579999999999985321        123778888999988753499999999999


Q ss_pred             CHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKV  176 (197)
Q Consensus       165 ~i~~~~~~i~~~  176 (197)
                      ||+++|.++++.
T Consensus       146 ~i~~~f~~~~~~  157 (158)
T cd04103         146 NVERVFQEAAQK  157 (158)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-34  Score=187.08  Aligned_cols=163  Identities=33%  Similarity=0.593  Sum_probs=147.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .-|||+++|..|+|||+|+++++.+.|++....|++..+ ...+.+++..+.++||||+|+++|+++..++++.|+++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            358999999999999999999999999988888886554 5678899999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++..++|+-+ .+|+..+.++. ..+-.++|+||.|+.+.++          +....+++|++.... -++++||++
T Consensus        86 vydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsake  153 (213)
T KOG0095|consen   86 VYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKE  153 (213)
T ss_pred             EEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccc
Confidence            9999999999998 99999999998 5677799999999988765          888888999988766 678999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      -++++.+|..++-.+..
T Consensus       154 a~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  154 ADNVEKLFLDLACRLIS  170 (213)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            99999999998877654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=188.82  Aligned_cols=166  Identities=30%  Similarity=0.614  Sum_probs=150.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...||++++|.--+|||||+-|++.+.|......|.. ......+.+.+....+.||||+||++|..+-+-+++..++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            4579999999999999999999999999888777773 444566778888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++|++||+.+ ..|...++... ..+.++||+||+|+.+++.          ++..++.+.++..|. .|+++||+
T Consensus        91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk  158 (218)
T KOG0088|consen   91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAK  158 (218)
T ss_pred             EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccc
Confidence            99999999999999 99999988877 5788899999999988876          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .+.||.++|+.+.+.+.++.
T Consensus       159 ~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  159 DNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             cccCHHHHHHHHHHHHHHHh
Confidence            99999999999988776543

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=7.2e-33  Score=202.96  Aligned_cols=162  Identities=27%  Similarity=0.428  Sum_probs=138.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.+|..+.+...+.+++..+.++||||+|++.|..++..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888888877777778888989999999999999998888888889999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +++.++|+.+ ..|...+...          ..+.|+++|+||+|+.....          +..+++.+++......+++
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~  149 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF  149 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence            9999999998 7776666432          24799999999999975433          6677777777654333899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++||++|.|++++|++|++.+..
T Consensus       150 evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         150 EVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcc
Confidence            99999999999999999997643

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=4e-33  Score=193.72  Aligned_cols=159  Identities=30%  Similarity=0.529  Sum_probs=135.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc-ccccccCCCCCCcEEEEEEe
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d   86 (197)
                      ||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+++||+||++. +......+++++|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            58999999999999999999988888888887666666777888889999999999985 34456677889999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ++++++|+.+ ..|...+....   .+.|+++|+||+|+.....          +..+++.++++..+. +++++||++|
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~  148 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED  148 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence            9999999988 77877776653   4899999999999865443          677888899999886 9999999999


Q ss_pred             C-CHHHHHHHHHHHHc
Q 029215          164 Q-NVKAVFDAAIKVVL  178 (197)
Q Consensus       164 ~-~i~~~~~~i~~~~~  178 (197)
                      . |++++|+++++.+.
T Consensus       149 ~~~v~~~f~~l~~~~~  164 (165)
T cd04146         149 YDGVHSVFHELCREVR  164 (165)
T ss_pred             chhHHHHHHHHHHHHh
Confidence            4 99999999998654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=9.6e-33  Score=192.70  Aligned_cols=160  Identities=29%  Similarity=0.529  Sum_probs=138.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCccccc-ccccCCCCCCcEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFIL   83 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~i~   83 (197)
                      .++|+++|++|||||||++++..+.+...+.++... .....+..++..+.+++||++|+++++ .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            589999999999999999999999887777777643 344567778888999999999999886 577888999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++..+ ..|+..+....  .++|+++|+||+|+.....          +..++++++++..++ +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  149 (170)
T cd04115          82 VYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSAK  149 (170)
T ss_pred             EEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEecc
Confidence            9999999999999 88988887654  5799999999999976544          677888899998886 99999999


Q ss_pred             C---CCCHHHHHHHHHHHH
Q 029215          162 T---QQNVKAVFDAAIKVV  177 (197)
Q Consensus       162 ~---~~~i~~~~~~i~~~~  177 (197)
                      +   +.+++++|.++++.+
T Consensus       150 ~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         150 DPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCcCCCCHHHHHHHHHHHh
Confidence            9   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1e-32  Score=192.23  Aligned_cols=165  Identities=21%  Similarity=0.306  Sum_probs=137.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeecee-EEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      +++.+||+++|.+|||||||++++..+.+. ..+.+|....+. ..+..++..+.+.+||++|++.+..++..+++++|+
T Consensus         1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence            357899999999999999999999999998 888888865553 456678888889999999999999999989999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +++|||++++.++..+ ..|+..+... .+.|+++|+||+|+.+...          ....+..++++.++...++++||
T Consensus        81 ~llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  148 (169)
T cd01892          81 ACLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSS  148 (169)
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEe
Confidence            9999999999999887 6777655322 3799999999999965432          23345567778888755799999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|.|++++|+.+++.+..
T Consensus       149 ~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         149 KLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             ccCccHHHHHHHHHHHhhC
Confidence            9999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=1.4e-32  Score=193.55  Aligned_cols=177  Identities=31%  Similarity=0.528  Sum_probs=145.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .||+++|.+|+|||||++++..+.+...+.++....+...+...+..+.+++||+||++++..++..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999998887777887766666667777778889999999999999888888999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      +++..+++.+ ..|...+....  .+.|+++++||+|+...+.          +..++...+++.++. +++++||+++.
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (180)
T cd04137          82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE  149 (180)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999998 55544444432  4789999999999965433          555667777887786 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215          165 NVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL  197 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      |+.++|.++.+.+...+....  .....+|+||
T Consensus       150 gv~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~  180 (180)
T cd04137         150 NVEEAFELLIEEIEKVENPLD--PGQKKKCSIM  180 (180)
T ss_pred             CHHHHHHHHHHHHHHhcCCCC--CCCCCCceeC
Confidence            999999999999876654433  2255679887

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=2.6e-32  Score=189.43  Aligned_cols=159  Identities=32%  Similarity=0.563  Sum_probs=134.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCceeece-eEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +||+++|++|||||||++++..+  .+.+.+.++.+..+ ...+.. .+..+.+++|||||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  57778888874333 333444 356789999999999999888889999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||+++++++..+ ..|+..+....++.|+++|+||+|+.+...          +...+++.++...+. +++++||++
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR  148 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            99999999999988 889888877766899999999999966543          556666777777776 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029215          163 QQNVKAVFDAAIKVV  177 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (197)
                      +.|++++|+++++.+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=5.6e-32  Score=188.86  Aligned_cols=169  Identities=65%  Similarity=1.110  Sum_probs=143.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|+|||||+++|+.+.+...+.++....+.......+..+.+++||+||++.+.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999987777788777777777778888999999999999888888888899999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC-CCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID-HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      +++++++......|+..+....++.|+++|+||+|+......... ......+..+++.+++..++..+++++||++|.|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            999999998877898888887778999999999999765431100 0112235677888888888877999999999999


Q ss_pred             HHHHHHHHHH
Q 029215          166 VKAVFDAAIK  175 (197)
Q Consensus       166 i~~~~~~i~~  175 (197)
                      ++++|+++++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4.1e-32  Score=188.27  Aligned_cols=161  Identities=37%  Similarity=0.678  Sum_probs=138.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|+|||||++++....+...+.++.... ....+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            589999999999999999999988876666666543 3456667787789999999999999888888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |++++++++.+ ..|+..+..+. ++.|+++|+||+|+.....          +..+.++++++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999998 67988887766 6899999999999876433          567788888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029215          165 NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (197)
                      |++++|+++.+.+.+
T Consensus       149 ~i~~l~~~i~~~~~~  163 (164)
T smart00175      149 NVEEAFEELAREILK  163 (164)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988754

Rab GTPases are implicated in vesicle trafficking.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=193.93  Aligned_cols=163  Identities=36%  Similarity=0.626  Sum_probs=150.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+|++++|.+|+|||+|..++..+.|.+.|.||+++.+...+.+++..+.+.|+||+|+++|..+...++.++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |+++++.||+.+ ..+.+.+ +... ..+|+++||||+|+...+.          +..++++.++..+++ +|+|+||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999999 6666666 3333 4789999999999987665          999999999999999 699999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      +.+++++|..+++.+..
T Consensus       150 ~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRL  166 (196)
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998876

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=6.2e-32  Score=188.82  Aligned_cols=164  Identities=32%  Similarity=0.599  Sum_probs=138.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++....+...+.++.. +.....+...+..+.+++||+||++.+..++..+++++|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988777777764 344456677888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           86 SLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      |+++++++... ..|...+....     .++|+++|+||+|+.....          ...++...+.+..+..+++++||
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  149 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA  149 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence            99999999887 67766554433     2799999999999975332          56677788888887569999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.|++++|+++.+.+.+..
T Consensus       150 ~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         150 KEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             CCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=6.9e-32  Score=186.68  Aligned_cols=158  Identities=36%  Similarity=0.617  Sum_probs=135.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|+++||||||++++++..+...+.++.. +.....+..++..+.+++||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988776666664 445566677787788999999999999988888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |++++++|... ..|+..+.... .+.|+++++||+|+.+...          ...++...+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH  148 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence            99999999998 77877776554 3799999999999964433          577788888888886 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKV  176 (197)
Q Consensus       165 ~i~~~~~~i~~~  176 (197)
                      |++++|+++.+.
T Consensus       149 ~v~~l~~~i~~~  160 (161)
T cd01861         149 NVKELFRKIASA  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.1e-31  Score=186.05  Aligned_cols=160  Identities=36%  Similarity=0.631  Sum_probs=138.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++++|||||++++..+.+...+.++... .....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            479999999999999999999999887766666654 3356677888889999999999999988888889999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      +|+++++++... ..|+..+.... ++.|+++++||+|+.....          ...++...+++..+. +++++||++|
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd01860          81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG  148 (163)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78888777665 6899999999999875433          567788888888886 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKVV  177 (197)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (197)
                      .|+.++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd01860         149 ENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=193.43  Aligned_cols=165  Identities=30%  Similarity=0.587  Sum_probs=138.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||+++|..+.+. .+.++.... ....+..++..+.+++|||||+++|..++..+++++|++++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999988774 455555433 34556677878899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++++|..+...|...+....  .+.|+++|+||+|+.....          +..+++..++...+. +++++||+
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SAk  160 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSAK  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            9999999999998566776665443  4789999999999976543          667788888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++.|++++|+++.+.+...+
T Consensus       161 ~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        161 TRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999886543

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.5e-31  Score=184.94  Aligned_cols=159  Identities=35%  Similarity=0.653  Sum_probs=135.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|+|||||+++++.+.+...+.++.. ......+...+..+.+.+||+||++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999888766666653 334455666777789999999999999999988999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |+++++++... ..|+..+.... .+.|+++++||+|+.....          +..+++.++++..+. +++++|++++.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~  148 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK  148 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999988 77888877765 3799999999999975433          566777788888887 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKVV  177 (197)
Q Consensus       165 ~i~~~~~~i~~~~  177 (197)
                      |++++++++.+.+
T Consensus       149 gi~~~~~~l~~~~  161 (162)
T cd04123         149 GIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=1.1e-31  Score=194.41  Aligned_cols=160  Identities=25%  Similarity=0.417  Sum_probs=133.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCC-CCcEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL   83 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~~~~~i~   83 (197)
                      +||+++|++|||||||++++..+.+. ..+.++.. +.+...+.+++..+.+++||++|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 56666654 55566777888889999999999982  23334555 8999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.+|... ..|+..+....  .+.|+++|+||+|+.....          +..+++++++...++ +++++||+
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~  146 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG  146 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999988 77877776654  5899999999999976544          677788888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++.|++++|+++++.+..+
T Consensus       147 ~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         147 LQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2e-31  Score=184.72  Aligned_cols=160  Identities=34%  Similarity=0.617  Sum_probs=137.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|+|||||++++....+...+.++....+......++..+.+++||+||++.+..++..+++.++++++++|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999988888888877777777788888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ++++.++... ..|...+....  .+.|+++|+||+|+.....          ....+...+.+.++. +++++||++|.
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence            9999999988 55655555442  4899999999999976322          456677778888886 99999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029215          165 NVKAVFDAAIKVVL  178 (197)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (197)
                      |++++|+++.+.+.
T Consensus       149 gi~~l~~~l~~~~~  162 (164)
T cd04139         149 NVEKAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=2.9e-31  Score=183.57  Aligned_cols=157  Identities=32%  Similarity=0.647  Sum_probs=134.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++++|||||++++....+...+.++....+ ...+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            6899999999999999999999888666667665433 344566777889999999999999888888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++++... ..|+..+..+.  ++.|+++|+||+|+....           ...++..++++..++ +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR  147 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence            99999999988 66888887765  589999999999997432           466788888888887 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKV  176 (197)
Q Consensus       164 ~~i~~~~~~i~~~  176 (197)
                      .|++++++++.+.
T Consensus       148 ~gi~~~~~~~~~~  160 (161)
T cd01863         148 DGVQQAFEELVEK  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01893 Miro1 Miro1 subfamily

Probab=100.00  E-value=7.5e-31  Score=182.45  Aligned_cols=164  Identities=30%  Similarity=0.429  Sum_probs=128.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|+|||||++++..+.+.+.++.+. ..+.......+..+.+++|||||++.+...+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998866544433 2333444556677899999999998887777777899999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  165 (197)
                      ++++++++.+...|+..+....++.|+++|+||+|+.+....        ....+++..++..+. ..+++++||++|.|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN  151 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence            999999999856788888776678999999999999764320        011233334444443 23899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 029215          166 VKAVFDAAIKVVLQ  179 (197)
Q Consensus       166 i~~~~~~i~~~~~~  179 (197)
                      ++++|+.+.+.+.+
T Consensus       152 v~~lf~~~~~~~~~  165 (166)
T cd01893         152 VSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998876

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.6e-30  Score=181.27  Aligned_cols=165  Identities=31%  Similarity=0.580  Sum_probs=137.3

Q ss_pred             CCC-cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCC
Q 029215            1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA   78 (197)
Q Consensus         1 ~~~-~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~   78 (197)
                      |.+ ...++|+++|++|+|||||++++..+.+.+.+.++.. +.....+.+.+..+.+.+||+||++.+...+..++..+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            553 4569999999999999999999998887666666654 33444566788888999999999999988888899999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           79 DVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      |++++|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+..+.+.+.... ++++
T Consensus        81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~  148 (169)
T cd04114          81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE  148 (169)
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence            999999999999999888 78887776655 4799999999999975443          556666777777775 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029215          158 CSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      +||++|.|++++|+++.+.+
T Consensus       149 ~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         149 TSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=4.9e-31  Score=183.58  Aligned_cols=156  Identities=17%  Similarity=0.218  Sum_probs=120.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.++||||||++++..+.+.. +.+|.+..+. .+..  ..+.+++|||||++.++.+++.+++++|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998877643 4555543332 2223  34789999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH---hC-CCeEEEe
Q 029215           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL---IG-SPAYIEC  158 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~  158 (197)
                      |||++++.++......|...+... .++.|+++|+||+|+.+.            +..+++++....   .+ ..+++++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  150 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS  150 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence            999999999998844455555443 257999999999998642            344555554321   11 1268899


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 029215          159 SSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~  175 (197)
                      ||++|.|++++|+||.+
T Consensus       151 SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         151 CATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eCCCCCChHHHHHHHhc
Confidence            99999999999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00876 Ras Ras family

Probab=99.98  E-value=7.8e-31  Score=181.03  Aligned_cols=158  Identities=36%  Similarity=0.677  Sum_probs=136.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|++|||||||+++++...+...+.++....+...+...+..+.+++||+||++.+..++..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999888888888888766677777787788999999999999888888889999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      ++++++... ..|...+....  ...|+++|+||+|+.....          ...+++.+++..++. +++++||+++.|
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~  148 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN  148 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence            999999988 56655555544  4899999999999976443          677888888888885 999999999999


Q ss_pred             HHHHHHHHHHHH
Q 029215          166 VKAVFDAAIKVV  177 (197)
Q Consensus       166 i~~~~~~i~~~~  177 (197)
                      ++++|++|.+.+
T Consensus       149 i~~l~~~l~~~i  160 (160)
T cd00876         149 IDEVFKLLVREI  160 (160)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.98  E-value=1.5e-30  Score=185.80  Aligned_cols=161  Identities=25%  Similarity=0.421  Sum_probs=132.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||++++..+.+...+.++........+.+.+..+.+++||+||+..+..++..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999998887777777655556677788888999999999999988888899999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCCCeEEEeccCCCC
Q 029215           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECSSKTQQ  164 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~  164 (197)
                      +++.+++.. ..|...+....  .++|+++|+||+|+.....         .+...+..+... ..+. +++++||++|.
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~  149 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE  149 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence            999999998 77777666654  4799999999999865311         134444444433 3444 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029215          165 NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (197)
                      |++++|+++++.+..
T Consensus       150 gv~~l~~~l~~~~~~  164 (198)
T cd04147         150 NVLEVFKELLRQANL  164 (198)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999998753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=4.8e-31  Score=185.62  Aligned_cols=158  Identities=15%  Similarity=0.231  Sum_probs=121.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.++||||||++++..+.+. .+.+|.+..+. .+...  .+.+++||+||++.++.+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45689999999999999999999987775 35566643332 23333  4788999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC-------eE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP-------AY  155 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  155 (197)
                      |||+++++++......+...+.... ++.|+++++||+|+...            ...++   +.+..+..       .+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence            9999999999988444444444322 58999999999998653            22222   33333321       35


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +++||++|+|++++|+||++.+.++
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhhc
Confidence            5899999999999999999887654

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.7e-33  Score=183.81  Aligned_cols=166  Identities=36%  Similarity=0.605  Sum_probs=144.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEE---------CCeEEEEEEEEcCCcccccccccCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVV---------DGSTVNLGLWDTAGQEDYNRLRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~l~i~D~~G~~~~~~~~~~~~   75 (197)
                      -++.+.+|.+|+|||||+.+++.+.|......|.+..+. ..+.+         .+..+.+++|||+||++|+++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            478899999999999999999999998888888755543 22222         23578999999999999999999999


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ++|=+++++||+++.+||-+. ..|+..++.+.  .+--+++++||+|+.+.+.          ++.+++.+++.+++. 
T Consensus        89 RDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl-  156 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL-  156 (219)
T ss_pred             HhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC-
Confidence            999999999999999999999 89998887765  6777899999999988766          999999999999998 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcCCchh
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                      ||||+||-+|.++++..+.+...++++.++
T Consensus       157 PYfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  157 PYFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             CeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888766543

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.98  E-value=5.8e-31  Score=185.69  Aligned_cols=163  Identities=20%  Similarity=0.331  Sum_probs=123.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..++|+++|.+|||||||++++..+.+... .+|.+.. ....+.. ++..+.+++|||||++.+..+|..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999998877654 4554322 2223332 345688999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--hC---CCeE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--IG---SPAY  155 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~  155 (197)
                      +|||+++..++... ..|+..+....  .+.|+++|+||+|+...            ...++...+...  ..   ..++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence            99999999988887 66665554433  47999999999998643            233444444321  11   1267


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +++||++|.|+++++++|++.+.+.+
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~~~  173 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILKRR  173 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999886544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00154 Rab Rab family

Probab=99.97  E-value=3e-30  Score=177.55  Aligned_cols=157  Identities=39%  Similarity=0.724  Sum_probs=134.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|+++||||||++++..+.+...+.++... .....+...+..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887776666643 44456666777789999999999999888889999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |+++++++..+ ..|+..+.... ++.|+++++||+|+.....          ...++.++++...+. +++++||+++.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~  148 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE  148 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            99999999988 77888887776 6899999999999963332          567888888888776 99999999999


Q ss_pred             CHHHHHHHHHH
Q 029215          165 NVKAVFDAAIK  175 (197)
Q Consensus       165 ~i~~~~~~i~~  175 (197)
                      |+++++++|.+
T Consensus       149 ~i~~~~~~i~~  159 (159)
T cd00154         149 NVEELFQSLAE  159 (159)
T ss_pred             CHHHHHHHHhC
Confidence            99999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.9e-30  Score=182.79  Aligned_cols=161  Identities=18%  Similarity=0.231  Sum_probs=121.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.+||+++|+++||||||++++..+.+.. +.+|.+..+. .+...  .+.+++||+||++.++.++..+++++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            456999999999999999999998877754 5566654332 33333  4788999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (197)
                      |||+++++++......+...+.... .+.|+++|+||.|+.+..            ..+++....     +.... .+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~l~~~~~~~~~~-~~~~  157 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------------STTEVTEKLGLHSVRQRNW-YIQG  157 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------------CHHHHHHHhCCCcccCCcE-EEEe
Confidence            9999999999988444554444322 578999999999986531            222221111     11111 4668


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +||++|.|++++|++|.+.+.++.
T Consensus       158 ~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        158 CCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999998877654

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3e-30  Score=179.93  Aligned_cols=157  Identities=16%  Similarity=0.255  Sum_probs=122.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.++||||||++++..+.+.. +.+|.+..+. .+...  .+.+++||+||++.+...+..+++++|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999887654 5666543332 23333  47888999999999998898999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHh-hhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-----CeEEEecc
Q 029215           88 ISKASYENVAKKWIPELR-HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSS  160 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~-~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa  160 (197)
                      ++++++.+. ..|+..+. ... .+.|+++|+||+|+...            +..+++++++...+.     ..++++||
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence            999999998 55554443 322 46899999999999643            456666666543221     15779999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.|++++|+||.+.+....
T Consensus       144 ~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999998876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=4.4e-30  Score=179.98  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=118.9

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||++++..+.+. .+.+|.+..+. .+...  .+.+++||+||++.+..++..+++++|++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34699999999999999999999877774 35566644332 23333  4788999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (197)
                      |||+++++++......|...+... .++.|+++|+||+|+.+..            ..+++.+...     .... .+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~  153 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNW-YIQP  153 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcE-EEEE
Confidence            999999999998844444444443 2579999999999996532            2222222111     1121 4668


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +||++|.|++++|+||.+.+.
T Consensus       154 ~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      154 TCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eeCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.6e-32  Score=175.27  Aligned_cols=159  Identities=33%  Similarity=0.641  Sum_probs=141.5

Q ss_pred             EEECCCCCcHHHHHHHHhhCCCC-CCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215           10 VTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus        10 ~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +++|.+++|||+|+-|+..+.|. .+..+|.+..+ ...+..++..+.+++|||+||++|++....+++++|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999999988874 44555555444 45667789999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV  166 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (197)
                      .+..||+.. +.|+..+.++. ..+.+++++||+|+.+++-          +..++++.+++.++. |+.++||++|.++
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv  148 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV  148 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence            999999999 99999999988 5888999999999988765          788999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 029215          167 KAVFDAAIKVVLQP  180 (197)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (197)
                      +..|-.|.+.+.+.
T Consensus       149 d~af~~ia~~l~k~  162 (192)
T KOG0083|consen  149 DLAFLAIAEELKKL  162 (192)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999887654

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=4.4e-31  Score=183.16  Aligned_cols=152  Identities=18%  Similarity=0.231  Sum_probs=121.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                      |+++|.+|||||||++++..+.+...+.+|.+...   ..++...+.+.+||+||++.++.++..+++++|++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            79999999999999999999888777777765332   223444588999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccH----HHHHHHHHHhCCCeEEEeccCC--
Q 029215           89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT----AQGEELRKLIGSPAYIECSSKT--  162 (197)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~--  162 (197)
                      ++.++... ..|+..+....+++|+++|+||+|+.....          +..    .++.++++..++ +++++||++  
T Consensus        79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~  146 (164)
T cd04162          79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG  146 (164)
T ss_pred             CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence            99999888 666666654446899999999999965432          111    234556666666 788888888  


Q ss_pred             ----CCCHHHHHHHHHH
Q 029215          163 ----QQNVKAVFDAAIK  175 (197)
Q Consensus       163 ----~~~i~~~~~~i~~  175 (197)
                          ++||+++|+.++.
T Consensus       147 s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         147 SPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhHHHHHHHHHHHHhc
Confidence                9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=5.6e-30  Score=176.79  Aligned_cols=152  Identities=16%  Similarity=0.220  Sum_probs=114.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.++||||||++++..+.+.. +.+|.+..+. .+...  .+.+++||+||++++..++..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            489999999999999999998887763 5666543332 23333  4788999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHH----HhCCCeEEEecc
Q 029215           87 LISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRK----LIGSPAYIECSS  160 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~Sa  160 (197)
                      ++++.++......|...+.... .+.|+++++||+|+.+..            ..++ ...+..    ..+. .++++||
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa  143 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------------SAAEVTDKLGLHSLRNRNW-YIQATCA  143 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCccccCCCCE-EEEEeeC
Confidence            9999999988444554444322 478999999999996431            1222 222211    1122 4679999


Q ss_pred             CCCCCHHHHHHHHHH
Q 029215          161 KTQQNVKAVFDAAIK  175 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~  175 (197)
                      ++|.|++++|++|.+
T Consensus       144 k~g~gv~~~~~~l~~  158 (159)
T cd04150         144 TSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.7e-29  Score=181.52  Aligned_cols=166  Identities=27%  Similarity=0.482  Sum_probs=138.7

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      .....+|++++|++|||||||++++..+.+...+.+|....+ ...+..++..+.+++||++|++.+..++..++.++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            445679999999999999999999988888888888875444 3445567788999999999999998888888899999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +++|||+++..++..+ ..|+..+....++.|+++++||+|+.+..           ... +...+++..+. .++++||
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~-~~~~~~~~~~~-~~~e~Sa  150 (215)
T PTZ00132         85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKA-RQITFHRKKNL-QYYDISA  150 (215)
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCH-HHHHHHHHcCC-EEEEEeC
Confidence            9999999999999998 78888887666789999999999986432           222 23456667776 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.|++++|.+|++.+...+
T Consensus       151 ~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        151 KSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999987654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-30  Score=167.54  Aligned_cols=164  Identities=31%  Similarity=0.597  Sum_probs=147.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.||..++|.-|+|||+|+.++....|..+.+.|++..+ ...+.+.+..+.+++|||+|+++|+...+++++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            3579999999999999999999999999888888886555 456778999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++.+.++..+ ..|+.-.+... |+..+++++||.|+...++          +.++++++|+.+.|. .++++||+
T Consensus        89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak  156 (215)
T KOG0097|consen   89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK  156 (215)
T ss_pred             EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence            99999999999988 89987776665 7999999999999988777          999999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      +|.++++.|-...+.+.+
T Consensus       157 tg~nvedafle~akkiyq  174 (215)
T KOG0097|consen  157 TGQNVEDAFLETAKKIYQ  174 (215)
T ss_pred             ccCcHHHHHHHHHHHHHH
Confidence            999999999777776654

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=2.6e-29  Score=175.87  Aligned_cols=154  Identities=19%  Similarity=0.288  Sum_probs=117.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|++|||||||++++....+ ..+.+|.+.. ...+..++  +.+++||+||++.++.++..+++++|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            3568999999999999999999997754 3444554422 22344443  778999999999988888889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-----hCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----IGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (197)
                      |||++++.++... ..|+..+...  ..+.|+++|+||+|+.+.            ...+++.++...     .+. +++
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~  153 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHW-RIQ  153 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCce-EEE
Confidence            9999999999887 5555444322  258999999999999653            233444444432     233 899


Q ss_pred             EeccCCCCCHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~  175 (197)
                      ++||++|.|++++|+++++
T Consensus       154 ~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         154 PCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             eccCCCCcCHHHHHHHHhc
Confidence            9999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.4e-28  Score=172.24  Aligned_cols=154  Identities=21%  Similarity=0.282  Sum_probs=116.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..++|+++|++++|||||++++..+.+.. +.+|....+. .+..++  +.+.+||+||++.+...+..+++++|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999887754 4555543332 333443  7788999999999998999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHH-HHHH----HHhCCCeEEEe
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELR----KLIGSPAYIEC  158 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~  158 (197)
                      +|+++++++......+...+.... .+.|+++++||+|+...            ...++. ..+.    +..+. +++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~~  156 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQGC  156 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEec
Confidence            999999998887444444444332 57999999999998653            222222 2221    22333 78999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 029215          159 SSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~  175 (197)
                      ||++|+|++++|++|.+
T Consensus       157 SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         157 CALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ccCCCCCHHHHHHHHhc
Confidence            99999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=6.1e-28  Score=171.68  Aligned_cols=150  Identities=21%  Similarity=0.309  Sum_probs=118.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-----CeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      +||+++|.++||||||++++..+.+.+.+.+|.+..+ ...+.++     +..+.+++|||+|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888888875433 2334442     567899999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhh-------------------C-CCCCEEEEeecCCccCCcccccCCCCCccccH
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHY-------------------A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITT  140 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  140 (197)
                      +|+|||++++++|+.+ ..|+..+...                   . +++|+++||||+|+.+.+..      ......
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~------~~~~~~  153 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES------SGNLVL  153 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc------chHHHh
Confidence            9999999999999999 8898887553                   1 37899999999999765320      001122


Q ss_pred             HHHHHHHHHhCCCeEEEeccCCCC
Q 029215          141 AQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      .....++.+.+. +.++.++.+..
T Consensus       154 ~~~~~ia~~~~~-~~i~~~c~~~~  176 (202)
T cd04102         154 TARGFVAEQGNA-EEINLNCTNGR  176 (202)
T ss_pred             hHhhhHHHhcCC-ceEEEecCCcc
Confidence            235567888888 78888888643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=7.5e-29  Score=171.58  Aligned_cols=152  Identities=20%  Similarity=0.218  Sum_probs=112.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +|+++|.++||||||++++.... +...+.+|.+.... .+..  ..+.+++|||||++.+..++..+++.+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999875 34556666643322 2222  34788899999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH---HHHhC-CCeEEEe
Q 029215           87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKLIG-SPAYIEC  158 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~  158 (197)
                      ++++.++... ..|+..+....    .++|+++|+||+|+....            ..++....   ..... ..+++++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~  144 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS  144 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence            9999998877 55555443321    479999999999996532            11222211   11111 1258899


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 029215          159 SSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~  175 (197)
                      ||++|.|++++|++|.+
T Consensus       145 Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         145 NALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eCCCCCchHHHHHHHhc
Confidence            99999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=6.1e-29  Score=172.97  Aligned_cols=157  Identities=19%  Similarity=0.225  Sum_probs=116.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +|+++|+++||||||++++.++ +...+.+|.+.. ...+...+  +.+++||+||++.++.+|..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999876 666667776543 23344444  7888999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCCC-
Q 029215           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKTQ-  163 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~-  163 (197)
                      ++..++... ..|+..+....  .+.|+++|+||+|+.......      .........++++..+. ..++++||++| 
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999988 66666554432  589999999999997643100      00000111223323332 25677999998 


Q ss_pred             -----CCHHHHHHHHHH
Q 029215          164 -----QNVKAVFDAAIK  175 (197)
Q Consensus       164 -----~~i~~~~~~i~~  175 (197)
                           .|+.+.|+||.+
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=3.4e-28  Score=172.68  Aligned_cols=157  Identities=18%  Similarity=0.297  Sum_probs=119.9

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++.++.+. .+.+|.... ...+.+++  +.+++||+||++.+...|..++++++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45789999999999999999999987763 445554332 23444555  678899999999888888888999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhh-hC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----------
Q 029215           84 AFSLISKASYENVAKKWIPELRH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-----------  150 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (197)
                      |+|+++.+++... ..++..+.. .. .+.|+++++||+|+...            +..++.++.....           
T Consensus        93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  159 (190)
T cd00879          93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK  159 (190)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence            9999999998877 444444433 22 57999999999998642            4455555554421           


Q ss_pred             ----CCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          151 ----GSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       151 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                          ...++++|||++|.|++++|+|+.+.+
T Consensus       160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence                112689999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=5.4e-28  Score=166.78  Aligned_cols=151  Identities=18%  Similarity=0.241  Sum_probs=112.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|++++|||||++++..+.+.. +.+|....+. .+...  .+.+++|||||++.+..++..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998777643 3455433222 23333  37889999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-HH----HHhCCCeEEEeccC
Q 029215           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-LR----KLIGSPAYIECSSK  161 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~  161 (197)
                      +++.++......|...+.... .+.|+++|+||+|+....            ..++... +.    ...+. +++++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa~  143 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSAI  143 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeecc
Confidence            999888776455554444332 589999999999986432            1122211 11    11123 69999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029215          162 TQQNVKAVFDAAIK  175 (197)
Q Consensus       162 ~~~~i~~~~~~i~~  175 (197)
                      +|.|++++|+++++
T Consensus       144 ~~~gi~~l~~~l~~  157 (158)
T cd04151         144 KGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1e-27  Score=167.74  Aligned_cols=159  Identities=23%  Similarity=0.340  Sum_probs=123.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.++|+++|+.+||||||++++..+.+.. ..||.+.. ...+..++  +.+.+||++|+..++..|+.+++++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            4678999999999999999999998765433 44444333 23344556  67889999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----CCCeEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-----GSPAYI  156 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  156 (197)
                      ||+|.++.+.+.+....+...+.... .++|++|++||+|+.+.            ...+++.......     ....++
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v~  154 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSVF  154 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEEE
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEEE
Confidence            99999999999988666666665443 58999999999998764            3344444332211     112577


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      .|||.+|+|+.+.++||.+.+
T Consensus       155 ~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  155 SCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHhcC
Confidence            899999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=1e-27  Score=166.72  Aligned_cols=152  Identities=22%  Similarity=0.320  Sum_probs=111.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +|+++|++|+|||||++++.....      ...+.+|....+ ..+..++  ..+++|||||++.+...+..+++.+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999976422      122333333222 2344444  6788999999999998888899999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh------CCC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI------GSP  153 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  153 (197)
                      ++|+|+++.+++... ..|+..+... . .+.|+++++||+|+...            ...++...+....      ...
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~  144 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC  144 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence            999999999888887 4454444332 2 58999999999998653            2334444433321      123


Q ss_pred             eEEEeccCCCCCHHHHHHHHHH
Q 029215          154 AYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      +++++||++|.|++++++||.+
T Consensus       145 ~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         145 LVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEEeeCCCCcCHHHHHHHHhc
Confidence            7999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=8.3e-28  Score=166.09  Aligned_cols=152  Identities=20%  Similarity=0.280  Sum_probs=112.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +|+++|++|||||||++++..+.+... .+|....+ ..+.. +..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999887543 44543222 22222 3447899999999999888888889999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH------HHHhCCCeEEEecc
Q 029215           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL------RKLIGSPAYIECSS  160 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa  160 (197)
                      +++.++......+...+.... .+.|+++|+||+|+....            ..++....      ....+. +++++||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~-~~~~~Sa  144 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------------TAEEITRRFKLKKYCSDRDW-YVQPCSA  144 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------------CHHHHHHHcCCcccCCCCcE-EEEeccc
Confidence            999988888333344443322 589999999999985421            12222211      111223 6889999


Q ss_pred             CCCCCHHHHHHHHHH
Q 029215          161 KTQQNVKAVFDAAIK  175 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~  175 (197)
                      ++|.|++++|++|.+
T Consensus       145 ~~~~gv~~~~~~i~~  159 (160)
T cd04156         145 VTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccCCChHHHHHHHhc
Confidence            999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=3.2e-27  Score=166.72  Aligned_cols=157  Identities=15%  Similarity=0.223  Sum_probs=116.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++.++.+.. +.+|.... ...+...+  +.+.+||+||++.+...|..+++++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            456999999999999999999999876542 33443222 22333444  678899999999998899999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-----------hC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----------IG  151 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  151 (197)
                      |+|+++++++......+...+.... .+.|+++|+||+|+...            ++.+++......           .+
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~  158 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR  158 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence            9999999998887444444443322 58999999999998643            333333332211           12


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ...++++||++|.|++++++||.+.
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            2358899999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-29  Score=169.94  Aligned_cols=163  Identities=33%  Similarity=0.515  Sum_probs=148.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .-+|++|+|..++||||++++++.+.|...+..++...+ ...+.+.++.+++.+||++|+++|+.+...+++.|.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            469999999999999999999999999999999886544 4456667777888899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||+-+|+.||+.. ..|...+......+|.++|-||+|+.++..          +..+++..+++.+.. .++.+|++..
T Consensus        99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked  166 (246)
T KOG4252|consen   99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKED  166 (246)
T ss_pred             EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhh
Confidence            9999999999998 899999999889999999999999998776          889999999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .|+..+|..+++.+.+
T Consensus       167 ~NV~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  167 FNVMHVFAYLAEKLTQ  182 (246)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999999999987754

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=7.7e-27  Score=160.94  Aligned_cols=151  Identities=21%  Similarity=0.292  Sum_probs=113.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||++++..+.+ ..+.++..... ..+...+  +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999998874 33444443222 2233343  6788999999999998999899999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH----hCCCeEEEeccC
Q 029215           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL----IGSPAYIECSSK  161 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~  161 (197)
                      ++++++... ..|+..+....  .+.|+++++||+|+....            ..++..+....    ....+++++||+
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  143 (158)
T cd00878          77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAV  143 (158)
T ss_pred             CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence            999999988 55544443332  589999999999987542            22333333221    122379999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029215          162 TQQNVKAVFDAAIK  175 (197)
Q Consensus       162 ~~~~i~~~~~~i~~  175 (197)
                      +|.|++++|++|..
T Consensus       144 ~~~gv~~~~~~l~~  157 (158)
T cd00878         144 TGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCHHHHHHHHhh
Confidence            99999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=5.8e-27  Score=174.45  Aligned_cols=147  Identities=20%  Similarity=0.314  Sum_probs=118.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-------------CeEEEEEEEEcCCcccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~G~~~~~~   69 (197)
                      ...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.++             +..+.++||||+|++.|..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            3569999999999999999999999999888888885443 3444443             3568899999999999999


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCccCCcccccCCCCCc
Q 029215           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLDLRDDKQFFIDHPGAV  136 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~  136 (197)
                      ++..++++++++|+|||++++.++..+ ..|+..+....             .++|++||+||+|+.....    .....
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~s  173 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGSS  173 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----ccccc
Confidence            999999999999999999999999999 89998887652             2589999999999965321    00011


Q ss_pred             cccHHHHHHHHHHhCCCeE
Q 029215          137 PITTAQGEELRKLIGSPAY  155 (197)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~  155 (197)
                      .+..++++++++..++.+.
T Consensus       174 ~~~~e~a~~~A~~~g~l~~  192 (334)
T PLN00023        174 GNLVDAARQWVEKQGLLPS  192 (334)
T ss_pred             cccHHHHHHHHHHcCCCcc
Confidence            2467899999999886543

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.4e-26  Score=161.87  Aligned_cols=141  Identities=31%  Similarity=0.508  Sum_probs=121.5

Q ss_pred             CCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhh
Q 029215           29 NTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY  107 (197)
Q Consensus        29 ~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (197)
                      +.|.+.+.+|.+ +.+...+.+++..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            457778888886 44456678888899999999999999999999999999999999999999999998 7888777554


Q ss_pred             C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          108 A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       108 ~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      . ++.|+++|+||+|+.....          +..+++..+++.++. .++++||++|.|++++|++|++.+....
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            4 6899999999999975433          678888899988887 8999999999999999999999986644

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=3.8e-26  Score=159.01  Aligned_cols=155  Identities=21%  Similarity=0.219  Sum_probs=106.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC---------CCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------SYRG   77 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~---------~~~~   77 (197)
                      +|+++|.+|+|||||+++|.+..+.. .+..++.......+...  .+.+++|||||+.........         ....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999877632 22222222222222222  378889999998532111010         1123


Q ss_pred             CcEEEEEEeCCCHhHH--HHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           78 ADVFILAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +|++++|+|+++..++  ... ..|+..+.....+.|+++|+||+|+.....          +.  +..++....+. ++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~~  145 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-EV  145 (168)
T ss_pred             cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-ce
Confidence            6899999999987653  444 567777765556899999999999965432          11  24455544444 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +++||++|.|++++|+++.+.++
T Consensus       146 ~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         146 LKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             EEEEecccCCHHHHHHHHHHHhC
Confidence            99999999999999999988763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=6.1e-26  Score=156.09  Aligned_cols=151  Identities=24%  Similarity=0.330  Sum_probs=114.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                      |+++|++|+|||||++++.+..+...+.++....+. .+...+  +.+.+||+||++.+...+..++..+|++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            789999999999999999999888877777654433 233333  77899999999999988889999999999999999


Q ss_pred             CHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEEEeccCC
Q 029215           89 SKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIECSSKT  162 (197)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~  162 (197)
                      +..++......+...+.... .+.|+++|+||+|+.....            ..+.....     .... .+++++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  145 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDRE-VSCYSISCKE  145 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCc-eEEEEEEecc
Confidence            99888877333433333322 5889999999999865321            11111111     1122 3789999999


Q ss_pred             CCCHHHHHHHHHH
Q 029215          163 QQNVKAVFDAAIK  175 (197)
Q Consensus       163 ~~~i~~~~~~i~~  175 (197)
                      |.|+++++++|++
T Consensus       146 ~~gi~~l~~~l~~  158 (159)
T cd04159         146 KTNIDIVLDWLIK  158 (159)
T ss_pred             CCChHHHHHHHhh
Confidence            9999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=3.2e-26  Score=160.99  Aligned_cols=156  Identities=17%  Similarity=0.203  Sum_probs=111.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC-------CCCCCCCce------eece-e--EEEEE---CCeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNF-S--ANVVV---DGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~t~------~~~~-~--~~~~~---~~~~~~l~i~D~~G~~~~~   68 (197)
                      +|+++|.+++|||||+++|....       +...+.++.      +..+ .  ....+   ++..+.+++|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998732       111121211      0011 1  11222   5567889999999999999


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..+..+++.+|++++|+|+++..++... ..|.... .  .++|+++|+||+|+.+..            ..+...++++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~  145 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSAD------------PERVKQQIED  145 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence            8888889999999999999987666655 4443322 2  278999999999985421            1223345566


Q ss_pred             HhCCC--eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          149 LIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       149 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      .++..  +++++||++|.|++++|+++.+.+..
T Consensus       146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIPP  178 (179)
T ss_pred             HhCCCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence            66652  48999999999999999999987643

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=1.3e-25  Score=148.43  Aligned_cols=165  Identities=18%  Similarity=0.261  Sum_probs=125.5

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +++.++|+++|..|+||||++++|.+.. .+...||.+..+ .....++  +.+++||.+||..+++.|++|++..|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            3468999999999999999999998755 334444443222 2333444  78899999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCcccc-HHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPIT-TAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +|+|.+|+-.+++....+-..+.... .+.|+++++||.|+...-.       ...+. .-+...+++...+ +.+-||+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~-------~~~i~~~~~L~~l~ks~~~-~l~~cs~  160 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS-------LEEISKALDLEELAKSHHW-RLVKCSA  160 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC-------HHHHHHhhCHHHhccccCc-eEEEEec
Confidence            99999999999888566655555443 6899999999999975421       00011 0122344455666 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      .+|+++.+-++|+.+.+..
T Consensus       161 ~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  161 VTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             cccccHHHHHHHHHHHHHH
Confidence            9999999999999998765

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.1e-25  Score=157.48  Aligned_cols=153  Identities=23%  Similarity=0.326  Sum_probs=112.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|++|+|||||++++.+..+. .+.++.+.. ...+...+  ..+.+||+||+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            34799999999999999999999987553 233443322 12334455  567899999998888888888899999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-------CeE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAY  155 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  155 (197)
                      |+|+++..++......+...+.... .+.|+++++||+|+....            ..+   .+.+..+.       .++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~---~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAE---EIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHH---HHHHHcCCcccCCCeEEE
Confidence            9999999888877344444443322 479999999999986532            111   22222222       146


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      +++||++|.|++++|+||.+
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            79999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.4e-25  Score=150.64  Aligned_cols=162  Identities=18%  Similarity=0.236  Sum_probs=129.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .....+|+++|-.++||||++.+|..+++... .||.+..... +.+.  .+++++||.+||+.++.+|++++++.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            45679999999999999999999998887555 6777555443 2333  488999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh---CCC-eEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI---GSP-AYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~  157 (197)
                      ||+|.+|++.+.+...++...+.... .+.|+++.+||.|+...            .+..++.+.....   +.. .+..
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq~  157 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQS  157 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEee
Confidence            99999999999999888887777765 68999999999999875            3333333322222   221 3456


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++|.+|+|+.+.++|+.+.+..+
T Consensus       158 ~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  158 TCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccccccccHHHHHHHHHHHHhcc
Confidence            99999999999999999987654

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=7.8e-25  Score=150.32  Aligned_cols=157  Identities=36%  Similarity=0.511  Sum_probs=120.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|+|||||++++....+...+.++.. ......+..++..+.+.+||+||+..+..++...+.+++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999998887666655553 33344466677668899999999999888888888889999999


Q ss_pred             EeCCCH-hHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|.... .++......|...+..... +.|+++++||+|+....           . ...........+..+++++||++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~-~~~~~~~~~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------L-KTHVAFLFAKLNGEPIIPLSAET  148 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------h-hHHHHHHHhhccCCceEEeecCC
Confidence            999877 6666654466666655554 89999999999996532           1 22333333444445899999999


Q ss_pred             CCCHHHHHHHHH
Q 029215          163 QQNVKAVFDAAI  174 (197)
Q Consensus       163 ~~~i~~~~~~i~  174 (197)
                      +.|+.++|++|.
T Consensus       149 ~~gv~~~~~~l~  160 (161)
T TIGR00231       149 GKNIDSAFKIVE  160 (161)
T ss_pred             CCCHHHHHHHhh
Confidence            999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=3e-25  Score=154.72  Aligned_cols=155  Identities=21%  Similarity=0.201  Sum_probs=108.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc----cccccCC---CCCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~~---~~~~~   79 (197)
                      +|+++|.+|+|||||+++|.+.... ..+..++.......+...+. ..+++|||||+...    ..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999865431 12222222222222333332 46789999997422    1222222   34699


Q ss_pred             EEEEEEeCCCH-hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCe
Q 029215           80 VFILAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPA  154 (197)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (197)
                      ++++|+|++++ ++++.. ..|.+.+....   .+.|+++|+||+|+.+...           ..+....+.... +. +
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~  147 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGK-P  147 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCC-C
Confidence            99999999999 788877 77877776654   3789999999999965432           233444455553 44 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q 029215          155 YIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ++++||+++.|++++|+++.+.
T Consensus       148 ~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         148 VFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            9999999999999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=4.3e-25  Score=167.87  Aligned_cols=161  Identities=19%  Similarity=0.179  Sum_probs=118.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----cc---ccCCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~~   78 (197)
                      -.|+++|.|++|||||+++++.... ..+++.|+.......+.+.+ ...+.+||+||..+-.    .+   +..+++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            4689999999999999999987542 34556666544444454422 2457799999974311    12   23356679


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           79 DVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +++++|+|+++.+++++. ..|...+..+.   .+.|+++|+||+|+.+...          +..+..+.+....+. ++
T Consensus       238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i  305 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV  305 (335)
T ss_pred             CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence            999999999988778877 78888887764   3789999999999965432          233344445555555 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +++||++++|+++++++|.+.+...
T Consensus       306 ~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        306 FLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1e-24  Score=158.13  Aligned_cols=178  Identities=34%  Similarity=0.546  Sum_probs=137.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|+|||||+++|..+.+...+.++....+... ....+..+.+.+|||+|+++++.++..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999988888876555443 43444478899999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCC--ccccHHHHHHHHHHh--CCCeEEEec
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGA--VPITTAQGEELRKLI--GSPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~S  159 (197)
                      ||.++..++.+....|...+.... .+.|+++++||+|+.............  +..............  ....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            999998787777799999998887 479999999999998764211000000  112222222222222  232489999


Q ss_pred             cC--CCCCHHHHHHHHHHHHcCCchh
Q 029215          160 SK--TQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       160 a~--~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                      ++  .+.++.++|..++..+......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            99  9999999999999998765433

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.1e-25  Score=152.56  Aligned_cols=135  Identities=25%  Similarity=0.278  Sum_probs=100.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc-----cccccccCCCCCCcEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI   82 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~~~~~i   82 (197)
                      ||+++|.+|||||||+++|.+..+.  +.+|..      +....     .+|||||+.     .+..+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999877542  223321      11222     589999973     2333333 478999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||++++.++...  .|...+     ..|+++|+||+|+.+..           ...+++.++++..+..+++++||++
T Consensus        68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence            99999999887543  444332     34999999999986422           3456677777777765899999999


Q ss_pred             CCCHHHHHHHHH
Q 029215          163 QQNVKAVFDAAI  174 (197)
Q Consensus       163 ~~~i~~~~~~i~  174 (197)
                      |.|++++|+++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1e-24  Score=150.99  Aligned_cols=153  Identities=19%  Similarity=0.153  Sum_probs=100.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC---CCCCCCCCc-eeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~---~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .|+++|.+++|||||+++|.+.   .+...+.++ +.......+...+ ...+++|||||++.+......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            6899999999999999999863   232222222 2111122333331 2578899999999887666667889999999


Q ss_pred             EEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh--CCCeEEEe
Q 029215           84 AFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI--GSPAYIEC  158 (197)
Q Consensus        84 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  158 (197)
                      |+|+++   .++....     ..+... ...|+++++||+|+.....        ......+..+..+..  ...+++++
T Consensus        81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  146 (164)
T cd04171          81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV  146 (164)
T ss_pred             EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence            999987   3333322     122222 1249999999999965321        001223334444332  22389999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 029215          159 SSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~  175 (197)
                      ||+++.|++++++.+.+
T Consensus       147 Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         147 SAVTGEGIEELKEYLDE  163 (164)
T ss_pred             eCCCCcCHHHHHHHHhh
Confidence            99999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.7e-24  Score=161.37  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=112.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-c-------cccCCCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG   77 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~~   77 (197)
                      +|+++|.+|+|||||+|+|.+..+.  .+...|+...........+  ..+.+|||||..... .       .....+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999987642  3444555444443333344  457899999975431 1       12345688


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|+++..+..   ..+...+...  +.|+++|+||+|+.+..           ...+....+....+..++++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence            99999999999876654   3444555544  79999999999996432           22334455555555557899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +||++|.|++++++++.+.+...+
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999886544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=1.1e-24  Score=156.24  Aligned_cols=155  Identities=20%  Similarity=0.210  Sum_probs=107.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccc---------cccccC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~   73 (197)
                      +..++|+|+|++|||||||++++.+..+.. ....++.......+...+. ..+.+|||||....         ...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            345899999999999999999999876422 2222222222233334332 36779999997321         1111 1


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...          .     .......+.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~  180 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP  180 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC
Confidence            25679999999999998887766 56666665543 4789999999999965432          1     133333444


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                       +++++||+++.|+++++++|.+.+
T Consensus       181 -~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         181 -DAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             -ceEEEEcCCCCCHHHHHHHHHhhC
Confidence             899999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=2.7e-24  Score=164.42  Aligned_cols=161  Identities=15%  Similarity=0.239  Sum_probs=112.9

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeeceeEEEEECCeEEEEEEEEcCCccc-cccccc------
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP------   72 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~------   72 (197)
                      +..+.++|+++|.+|||||||+++|.+..+..  +...++.......+..++  ..+.||||||+.. +..+..      
T Consensus        48 ~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         48 SNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             cccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence            44567899999999999999999999877632  223333444444555666  4578999999853 222211      


Q ss_pred             -CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                       ..+.++|++++|+|.++.  +......|+..+...  +.|.++|+||+|+...             ...++.+.....+
T Consensus       126 ~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~  188 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENH  188 (339)
T ss_pred             HHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcC
Confidence             236789999999997653  334434566666554  6788999999998532             1234445554443


Q ss_pred             -CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          152 -SPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       152 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                       ..+++++||++|.|++++|+++.+.+...+
T Consensus       189 ~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        189 PDSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             CCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence             347899999999999999999999886543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=2.8e-24  Score=149.53  Aligned_cols=158  Identities=17%  Similarity=0.200  Sum_probs=106.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .|+++|.+|+|||||+++|..+.+.....++..... ...+... +....+.+|||||++.+..++...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999998877554333332222 1222222 13467889999999988888888888999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH----HhC-CCeEEEecc
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK----LIG-SPAYIECSS  160 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~Sa  160 (197)
                      |+++....+..  ..+..+...  +.|+++|+||+|+.....         .........+..    ..+ ..+++++||
T Consensus        82 d~~~~~~~~~~--~~~~~~~~~--~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKAA--NVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHHc--CCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence            99885322222  122233333  789999999999864321         001111111111    111 237899999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 029215          161 KTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~  178 (197)
                      ++|.|++++++++.+...
T Consensus       149 ~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         149 KTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.2e-23  Score=144.82  Aligned_cols=147  Identities=15%  Similarity=0.239  Sum_probs=106.6

Q ss_pred             EECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc------ccCCC--CCCcEE
Q 029215           11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF   81 (197)
Q Consensus        11 v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~   81 (197)
                      |+|.+|+|||||++++.+..+. ..+.+++.......+..++  ..+.+|||||+..+...      +..++  +.+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999887533 3334444444445566665  46789999999876642      34444  489999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      ++|+|+++.+...    .+...+...  ++|+++|+||+|+.....          +. .....++...+. +++++||.
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~  140 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR  140 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence            9999998865432    233333334  799999999999975432          22 234566677776 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029215          162 TQQNVKAVFDAAIKVV  177 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~  177 (197)
                      ++.|++++++++.+.+
T Consensus       141 ~~~~~~~l~~~l~~~~  156 (158)
T cd01879         141 KGEGIDELKDAIAELA  156 (158)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.4e-23  Score=142.86  Aligned_cols=152  Identities=41%  Similarity=0.757  Sum_probs=114.8

Q ss_pred             EECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC
Q 029215           11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        11 v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (197)
                      ++|++|+|||||++++..... .....++.................+.+||+||+..+...+...++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998776 4455555544445555566667889999999998887777778889999999999999


Q ss_pred             HhHHHHHHHHH--HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHHHhCCCeEEEeccCCCCCH
Q 029215           90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLIGSPAYIECSSKTQQNV  166 (197)
Q Consensus        90 ~~s~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i  166 (197)
                      +.++... ..|  .........+.|+++++||+|+.....          ..... ......... .+++++|+..+.|+
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  148 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV  148 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence            9988887 444  222233336899999999999976532          11111 233333344 49999999999999


Q ss_pred             HHHHHHHH
Q 029215          167 KAVFDAAI  174 (197)
Q Consensus       167 ~~~~~~i~  174 (197)
                      ++++++|.
T Consensus       149 ~~~~~~l~  156 (157)
T cd00882         149 EELFEELA  156 (157)
T ss_pred             HHHHHHHh
Confidence            99999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=7.8e-24  Score=145.52  Aligned_cols=147  Identities=21%  Similarity=0.219  Sum_probs=104.8

Q ss_pred             EEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--------cccCCCCCCc
Q 029215           10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   79 (197)
Q Consensus        10 ~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~~~   79 (197)
                      +++|.+|+|||||++++....  +.....+++...........+  ..+.+|||||+..+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999764  334445555444444555555  5678999999887543        2234567899


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++++|+|+.+..+....  .+...+...  +.|+++|+||+|+.+...          .     .......+..+++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence            99999999876544432  333444444  699999999999965432          1     2223345555789999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 029215          160 SKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~  177 (197)
                      ++++.|++++++++++.+
T Consensus       140 a~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         140 AEHGRGIGDLLDAILELL  157 (157)
T ss_pred             cccCCCHHHHHHHHHhhC
Confidence            999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.91  E-value=9.7e-23  Score=133.36  Aligned_cols=168  Identities=24%  Similarity=0.337  Sum_probs=140.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccc-cccccCCCCCCcE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV   80 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~-~~~~~~~~~~~~~   80 (197)
                      +..|++|+|..++|||++++++..+..  ..++.+|+++.|...+..+ +..-.+.++||.|...+ ..+-+++++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            468999999999999999999886654  3456778888887766654 44567889999998877 4566788899999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++||+..|++||+.+ ..+-..|....  ..+|+++++||+|+.+...          ++.+-++.|++.-.. ..+++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV  155 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV  155 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence            9999999999999988 66666666544  4799999999999987765          899999999999887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      ++.+...+-+.|..+...+.++..+.
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCcccc
Confidence            99999999999999999988776444

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=2.3e-23  Score=158.26  Aligned_cols=158  Identities=20%  Similarity=0.205  Sum_probs=113.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----cc---ccCCCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~   77 (197)
                      .-.|+++|.+++|||||++++..... ..+++.|+.......+.+.+ ...+++||+||..+..    .+   +..+++.
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            35789999999999999999997542 34455555433333444443 2567899999975322    12   2233567


Q ss_pred             CcEEEEEEeCCCH---hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           78 ADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ++++++|+|+++.   +.+++. ..|...+..+.   .+.|+++|+||+|+.+..           ...+..+.+++..+
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~  303 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG  303 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence            9999999999986   566666 67766666553   478999999999996542           22344556666666


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      . +++++||+++.|++++++++.+.+
T Consensus       304 ~-~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       304 K-PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence            5 899999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.4e-23  Score=167.34  Aligned_cols=160  Identities=20%  Similarity=0.209  Sum_probs=114.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----------ccccc-
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR-   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~-   71 (197)
                      ..++|+++|.+++|||||+++|++..+  .....+++.+.....+..++..  +.+|||||..+          +..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998764  4555666666666666677754  46999999632          22221 


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ..+++.+|++++|+|++++.++++.  .++..+...  +.|+++|+||+|+.+...        ......+.........
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence            2346789999999999999888776  344555444  899999999999965321        0011112222112223


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ..+++++||++|.|++++|+.+.+.+.
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            348999999999999999999998774

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.1e-23  Score=142.64  Aligned_cols=147  Identities=20%  Similarity=0.261  Sum_probs=106.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc------ccCCC--CC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~   77 (197)
                      ++|+++|.|+||||||+|+|++... ..++++++.+.....+...+  ..+.++|+||.......      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999998763 45677777666677777777  55669999996544322      12222  57


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .|++++|+|+++.+.-.    .+...+.+.  ++|+++++||+|+.....          .. .....+.+.++. |+++
T Consensus        79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~  140 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP  140 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred             CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence            99999999998754322    334445555  899999999999976543          22 246678888898 9999


Q ss_pred             eccCCCCCHHHHHHHH
Q 029215          158 CSSKTQQNVKAVFDAA  173 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i  173 (197)
                      +||+++.|++++++.|
T Consensus       141 ~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EBTTTTBTHHHHHHHH
T ss_pred             EEeCCCcCHHHHHhhC
Confidence            9999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=139.98  Aligned_cols=155  Identities=22%  Similarity=0.317  Sum_probs=127.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      ...+.++|-.++|||||++.+..+.+.....||.+....   .+....+.+.+||.||+.+|+++|..+.+.+++++||+
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            467899999999999999999998888877777655433   35556688999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-------CeEEE
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAYIE  157 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  157 (197)
                      |+.+++.+...+.++...+.... .++|++++|||.|+.....            .   .++...+|.       .-+|.
T Consensus        97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------~---~~li~rmgL~sitdREvcC~s  161 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------K---IALIERMGLSSITDREVCCFS  161 (186)
T ss_pred             ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------H---HHHHHHhCccccccceEEEEE
Confidence            99999998888888888887766 7999999999999987632            2   122233321       24688


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +|+++..+++-+.+|+++.-.
T Consensus       162 iScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  162 ISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             EEEcCCccHHHHHHHHHHHhh
Confidence            999999999999999998643

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=5.1e-24  Score=152.49  Aligned_cols=156  Identities=19%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC-----------cccccccccC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~   73 (197)
                      ..++|+++|.+|+|||||+++|.+..+.....++.... ...+...    .+++|||||           ++.++..+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            46899999999999999999999877644333332211 1222222    478999999           3455544444


Q ss_pred             CC----CCCcEEEEEEeCCCHhHHHH---------HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccH
Q 029215           74 SY----RGADVFILAFSLISKASYEN---------VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT  140 (197)
Q Consensus        74 ~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  140 (197)
                      ++    ..++++++|+|.++...+..         ....+...+...  ++|+++|+||+|+.+..             .
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-------------~  147 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-------------D  147 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-------------H
Confidence            43    34678888998865322100         001223333333  89999999999985431             2


Q ss_pred             HHHHHHHHHhCC--------CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          141 AQGEELRKLIGS--------PAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       141 ~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +...++++.++.        .+++++||++| |+++++++|.+.+....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            344555555553        15799999999 99999999999875433

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=3.5e-23  Score=162.81  Aligned_cols=150  Identities=23%  Similarity=0.240  Sum_probs=114.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   74 (197)
                      ..++|+++|++|+|||||+|+|++..  +...+++|+.+.....+.+++  +.+++|||||+..+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            46899999999999999999999864  456677777776677777777  45679999998655432        2346


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ++++|++++|+|++++.++...   |+..+...  +.|+++|+||+|+...                +...+++..+. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence            7889999999999998776643   55444433  7899999999998532                11234455665 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++++||++ .|++++|+.+.+.+.+
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHH
Confidence            89999998 5899999888887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=1.6e-23  Score=137.71  Aligned_cols=114  Identities=33%  Similarity=0.557  Sum_probs=86.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ||+|+|++|||||||+++|.+..+..  ...++....+ ............+.+||++|++.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999987751  1122222222 23445566666699999999998888777778899999999


Q ss_pred             EeCCCHhHHHHHHHH--HHHHHhhhCCCCCEEEEeecCC
Q 029215           85 FSLISKASYENVAKK--WIPELRHYAPGVPIILVGTKLD  121 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D  121 (197)
                      ||+++++++..+...  |+..+....+++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999887333  5677776667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=3.6e-23  Score=158.54  Aligned_cols=152  Identities=20%  Similarity=0.230  Sum_probs=108.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc---------ccccccCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~   74 (197)
                      ..++|+++|.+|+|||||+|+|++..+. .+..+++.+.....+.+.+. ..+.+|||+|..+         |...+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999987542 34444554555555666332 4678999999722         22222 23


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +.++|++++|+|++++.+.... ..|...+.... .+.|+++|+||+|+.+...               ..... . +..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---------------v~~~~-~-~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---------------IERLE-E-GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh---------------HHHHH-h-CCC
Confidence            6789999999999998877765 55655555543 4789999999999854221               11111 1 223


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHH
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      +++++||++|.|+++++++|.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            68999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=2.8e-23  Score=145.42  Aligned_cols=152  Identities=24%  Similarity=0.283  Sum_probs=103.2

Q ss_pred             EECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccc----cccc---cCCCCCCcEE
Q 029215           11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF   81 (197)
Q Consensus        11 v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~----~~~~---~~~~~~~~~~   81 (197)
                      ++|++|||||||+++|.+... ...+.+++.......+... +  ..+.+|||||....    ..++   ...++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999998764 3344444433333344455 4  56789999997432    2222   2235679999


Q ss_pred             EEEEeCCCH------hHHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           82 ILAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ++|+|+++.      .++.+. ..|...+....        .+.|+++|+||+|+.....          ..........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~  147 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA  147 (176)
T ss_pred             EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence            999999988      466665 55555554332        3799999999999965432          2221122333


Q ss_pred             HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          148 KLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ...+. +++++||+++.|++++++++.+.
T Consensus       148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEGA-EVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence            33343 79999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=2.6e-23  Score=165.83  Aligned_cols=153  Identities=20%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~   75 (197)
                      ..+|+|+|.+|||||||+++|.+...  .....+++.+.........+.  .+.+|||||++.        +...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            46899999999999999999998753  234444444555555666664  567999999763        222334567


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +++|++++|||++++.++..  ..+...+...  +.|+++|+||+|+....             .+....+  ..+....
T Consensus       116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~~  176 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALW--SLGLGEP  176 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHH--hcCCCCe
Confidence            88999999999998866543  3455555554  89999999999985421             1111122  2343345


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++||++|.|++++|+++++.+..
T Consensus       177 ~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        177 HPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEEEcCCCCCcHHHHHHHHhhccc
Confidence            799999999999999999998865

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=6.8e-23  Score=145.87  Aligned_cols=148  Identities=15%  Similarity=0.084  Sum_probs=99.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh--CCCCCCCC------------Cceee-ceeEEEEECCeEEEEEEEEcCCcccccccc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLR   71 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~--~~~~~~~~------------~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~   71 (197)
                      -+|+++|.+++|||||+++|+.  +.+...+.            .+.+. .......+....+.+++|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  55543321            11111 111222233344788999999999999888


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--  149 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (197)
                      ..+++++|++++|+|+++... ... ..++..+...  ++|+++|+||+|+.....         ....+++.++...  
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~  149 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALEL--GLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG  149 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            889999999999999987532 222 3333333333  789999999999964321         0123444444422  


Q ss_pred             -----hCCCeEEEeccCCCCCHHH
Q 029215          150 -----IGSPAYIECSSKTQQNVKA  168 (197)
Q Consensus       150 -----~~~~~~~~~Sa~~~~~i~~  168 (197)
                           .+. +++++||++|.|+.+
T Consensus       150 ~~~~~~~~-~iv~~Sa~~g~~~~~  172 (194)
T cd01891         150 ATEEQLDF-PVLYASAKNGWASLN  172 (194)
T ss_pred             CccccCcc-CEEEeehhccccccc
Confidence                 244 899999999977633

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=9.2e-23  Score=140.12  Aligned_cols=145  Identities=26%  Similarity=0.327  Sum_probs=105.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~   76 (197)
                      ++|+++|++|+|||||++++.....  .....+++.......+...+  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            5899999999999999999998753  23344444343344444554  56789999998655432        123567


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++|+|++++.+.... ..+..     ..+.|+++|+||+|+.+...          .       .....+ .+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~-~~~~  135 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAG-KPII  135 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCC-CceE
Confidence            89999999999987766655 33322     33799999999999976432          1       223333 4899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ++||+++.|+++++++|.+.+
T Consensus       136 ~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         136 AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHHHhh
Confidence            999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=3.5e-23  Score=146.54  Aligned_cols=157  Identities=20%  Similarity=0.163  Sum_probs=109.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-----------------eeceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (197)
                      +|+++|.+|+|||||++++...........+.                 .......+...  ...+.+|||||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            58999999999999999998876543321111                 11111122223  367889999999888888


Q ss_pred             ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI  150 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      +..++..+|++++|+|++++.+....  .++..+..  .+.|+++++||+|+.....        .......+++..+..
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~  146 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI  146 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence            88888899999999999886544432  34444444  3899999999999975221        001222333333332


Q ss_pred             C-------------CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          151 G-------------SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       151 ~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +             ..+++++||++|.|++++++++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            2             348999999999999999999999874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=1.4e-22  Score=160.52  Aligned_cols=157  Identities=23%  Similarity=0.248  Sum_probs=113.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-----------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   71 (197)
                      ..++++++|.+++|||||+++|++...  .....+++.+.....+..++.  .+.+|||||+.......           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            458999999999999999999997653  455566666555556666664  56799999986554332           


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHH-
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL-  149 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  149 (197)
                      ..+++.+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+.+..           ...++.. .+... 
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~  313 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL  313 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence            2356789999999999988776665  444444444  79999999999997221           1122222 22222 


Q ss_pred             --hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          150 --IGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       150 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                        .+..+++++||++|.|++++|+++.+.+.
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence              23458999999999999999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=4.7e-23  Score=162.88  Aligned_cols=148  Identities=24%  Similarity=0.286  Sum_probs=112.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   74 (197)
                      ..++|+++|.+|+|||||+|+|.+...  ..+..+++.+.....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            358999999999999999999998653  45666666666666777777  46789999998754432        1235


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +.++|++++|+|++++.++... ..|..     ..+.|+++|+||+|+.+...          ..        ...+. +
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~~-~  346 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENGK-P  346 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccCC-c
Confidence            7789999999999998777654 44433     34789999999999965322          10        22333 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++++||++|.|++++++++.+.+..
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999999998753

>cd04163 Era Era subfamily

Probab=99.90  E-value=8.2e-23  Score=141.54  Aligned_cols=155  Identities=18%  Similarity=0.173  Sum_probs=104.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCC--CCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--------cccCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~   75 (197)
                      ..+|+++|++|+|||||++++.+......  ...+.........  ......+.+|||||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            57899999999999999999987654221  1122222222222  22236788999999764332        123346


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|++++|+|++++.+  .....+...+...  +.|+++|+||+|+.....          ...+....+....+..++
T Consensus        81 ~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~  146 (168)
T cd04163          81 KDVDLVLFVVDASEPIG--EGDEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI  146 (168)
T ss_pred             HhCCEEEEEEECCCccC--chHHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence            78999999999998722  2213444445444  689999999999974322          233344455555545589


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      +++|++++.|+++++++|.+.
T Consensus       147 ~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         147 FPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEEEeccCCChHHHHHHHHhh
Confidence            999999999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=2.4e-22  Score=162.58  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=109.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +..+|+++|++++|||||+++|....+...+.+.+. ......+..++. ..+.||||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            568999999999999999999998877655443332 222223334332 267899999999999998888999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-------hC-CCeE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------IG-SPAY  155 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~  155 (197)
                      |+|+++....+.. ..+ ......  ++|+++++||+|+...             ..+...+....       ++ ..++
T Consensus       165 VVda~dgv~~qT~-e~i-~~~~~~--~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~  227 (587)
T TIGR00487       165 VVAADDGVMPQTI-EAI-SHAKAA--NVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF  227 (587)
T ss_pred             EEECCCCCCHhHH-HHH-HHHHHc--CCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence            9999875433332 222 222323  8999999999998642             12223332222       22 2378


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      +++||++|.|++++++++...
T Consensus       228 v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       228 VPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             EEEECCCCCChHHHHHhhhhh
Confidence            999999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=2.5e-22  Score=151.52  Aligned_cols=161  Identities=22%  Similarity=0.241  Sum_probs=111.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--------cccCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~   74 (197)
                      +.-.|+++|.+|||||||+|+|++..+.  .....|+...........+  ..+.+|||||......        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4567999999999999999999987652  2233333333333333333  6788999999754321        22335


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +.++|++++|+|+++...  .....+...+...  +.|+++|+||+|+.....          ...+....+.+..+..+
T Consensus        82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKKV--KTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhhc--CCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence            678999999999988322  1213444444433  789999999999974321          23445556666566668


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++++||+++.|++++++++.+.+...+
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999886543

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=9.4e-22  Score=137.17  Aligned_cols=155  Identities=23%  Similarity=0.283  Sum_probs=104.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------cc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   72 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~~   72 (197)
                      .++|+++|.+|+|||||++++++...  .....++........+...+.  .+.+|||||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            58999999999999999999988653  233333433333444555554  4669999997543211           11


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHHHhC
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLIG  151 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  151 (197)
                      ..+..+|++++|+|++++.+....  .+...+...  +.|+++++||+|+.....          ...+. ...+.+..+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  145 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP  145 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence            245689999999999988765543  333343333  789999999999976421          11222 222223332


Q ss_pred             ---CCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          152 ---SPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       152 ---~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                         ..+++++||+++.|++++++++.+.
T Consensus       146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         146 FLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence               3489999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=2.2e-22  Score=163.47  Aligned_cols=160  Identities=20%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCC-------CCCCCCCce------eece---eEEEEE---CCeEEEEEEEEcCCccc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQED   66 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~t~------~~~~---~~~~~~---~~~~~~l~i~D~~G~~~   66 (197)
                      .-+++++|+.++|||||+++|+...       +...+..+.      +..+   ...+.+   ++..+.++||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998642       111111110      1111   111222   45668999999999999


Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |...+..+++.+|++++|+|++++.+.+.. ..|...+. .  ++|+++|+||+|+....            ......++
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~-~--~ipiIiViNKiDl~~~~------------~~~~~~el  146 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE-N--DLEIIPVINKIDLPSAD------------PERVKKEI  146 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH-c--CCCEEEEEECcCCCccC------------HHHHHHHH
Confidence            998888899999999999999997766665 44443332 2  78999999999986421            12233455


Q ss_pred             HHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          147 RKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       147 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .+.++..  .++++||++|.|++++|++|.+.+..+.
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            5555542  4899999999999999999999887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=6.9e-22  Score=153.94  Aligned_cols=158  Identities=21%  Similarity=0.225  Sum_probs=112.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----ccc---cCCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLR---PLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~~---~~~~~~~   78 (197)
                      -.|+++|.|+||||||+++++.... ..+++.|+.......+.+.+ ...+.+||+||.....    .+.   ..+++.+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            3799999999999999999997542 23455555433333344431 2567899999974321    122   2235679


Q ss_pred             cEEEEEEeCCCH---hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++++|+|+++.   +.+++. ..|...+..+.   .+.|+++|+||+|+...              .+....+.+.++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~  302 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP  302 (424)
T ss_pred             CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC
Confidence            999999999864   556665 66777776654   37899999999998321              2345566666664


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                       +++++||+++.|++++++++.+.+...+
T Consensus       303 -~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        303 -KVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             -cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence             8999999999999999999998875543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=2.5e-22  Score=138.26  Aligned_cols=142  Identities=20%  Similarity=0.154  Sum_probs=99.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc----cCCCCCCcEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~~~~i~   83 (197)
                      +|+++|.+++|||||++++.+.....  ..+      ..+.+...    .+|||||.......+    ...+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987543111  111      11222222    269999973222111    123678999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (197)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+.+             ...+...+++...+. .|++++||++
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence            999998876532   233222   23689999999999854             234566677777765 3899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|+++.+.+...
T Consensus       132 g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ccCHHHHHHHHHHhchhh
Confidence            999999999998877544

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=1.8e-22  Score=143.52  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=100.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC----CCCCC----CCCceeeceeEEEEE------------CCeEEEEEEEEcCCccc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN----TFPTD----YVPTVFDNFSANVVV------------DGSTVNLGLWDTAGQED   66 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~----~~~~~----~~~t~~~~~~~~~~~------------~~~~~~l~i~D~~G~~~   66 (197)
                      ++|+++|++++|||||+++|+..    .+...    ..+++.......+.+            .+..+.+++|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999863    11111    112221111111222            23357888999999865


Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      +........+.+|++++|+|+++....... ..+. .....  +.|+++++||+|+.....        .....++.++.
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~  148 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEE--------RERKIEKMKKK  148 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            433322335678999999999886544433 2221 12222  679999999999864321        00112222221


Q ss_pred             -HHH-----hCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          147 -RKL-----IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       147 -~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                       ...     ....+++++||++|.|++++++++.+.+..+
T Consensus       149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence             111     1223899999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.9e-22  Score=127.87  Aligned_cols=158  Identities=17%  Similarity=0.202  Sum_probs=124.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+.+|-.++||||++..|..+.. ....||.+..+. .+  ...++.+++||.+|++..+.+|++++....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-tV--tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-EE--EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            3578999999999999999999987664 333445443332 22  3334788999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (197)
                      |+|..+++..++.+.++...+.... .+.|++|.+||.|+....            ...+++.+..     ...+ -+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W-~vqp  157 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNW-YVQP  157 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCcc-Eeec
Confidence            9999999999999889988887765 689999999999998764            3334443322     2223 3567


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++|.+|+|+.+-|.|+.+.+.
T Consensus       158 ~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  158 SCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cccccchhHHHHHHHHHhhcc
Confidence            999999999999999988764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=3.8e-22  Score=158.27  Aligned_cols=150  Identities=22%  Similarity=0.210  Sum_probs=108.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc--------cccccCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~   76 (197)
                      .+|+++|.+|||||||+++|.+...  .....+++.+.......+++  ..+++|||||++..        ......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999997653  45555555555566666777  67889999998761        122344567


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+...              .....++ ...+...++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~--------------~~~~~~~-~~lg~~~~~  140 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDE--------------EADAYEF-YSLGLGEPY  140 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccc--------------hhhHHHH-HhcCCCCCE
Confidence            89999999999886443322  223334444  7999999999996431              1122222 345654589


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ++||++|.|++++++++.+..
T Consensus       141 ~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        141 PISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEeeCCCCHHHHHHHHHhhC
Confidence            999999999999999998844

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=3.1e-22  Score=158.60  Aligned_cols=152  Identities=22%  Similarity=0.255  Sum_probs=111.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCCCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG   77 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~~   77 (197)
                      +|+++|.+|||||||+|+|.+...  ..++.+++.+.....+...+.  .+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998653  445556665666666666664  577999999632        22334556788


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|+.++.+..+.  .+...++..  +.|+++|+||+|+.....              ...+ ...++..++++
T Consensus        79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~--------------~~~~-~~~lg~~~~~~  139 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA--------------VAAE-FYSLGFGEPIP  139 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc--------------cHHH-HHhcCCCCeEE
Confidence            9999999999886444432  344445554  799999999999865321              1112 34566668999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +||++|.|+.++++++.+.+...
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCcc
Confidence            99999999999999999888654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.9e-23  Score=138.58  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=122.4

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhC---CCC----CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN---TFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL   73 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~---~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~   73 (197)
                      |.++..+.++++|..++|||||+.++...   .+.    ....+|.+. ....+.+.+  ..+.|||..||+..+++|..
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL-nig~i~v~~--~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL-NIGTIEVCN--APLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce-eecceeecc--ceeEEEEcCChHHHHHHHHH
Confidence            34566789999999999999999776532   221    112222222 233444454  56779999999999999999


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH---HHH
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKL  149 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  149 (197)
                      ++..+|++|+++|+++++.|+.....+...+.... .+.|+++.+||.|+.+..            ...++...   +..
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~  156 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAEL  156 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhh
Confidence            99999999999999999999988566655554443 699999999999997652            23333322   333


Q ss_pred             hC--CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          150 IG--SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       150 ~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .+  ..++.++||.+|+||++-..|+.+.+.++
T Consensus       157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            32  23678999999999999999999998876

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=1.3e-21  Score=138.58  Aligned_cols=162  Identities=22%  Similarity=0.248  Sum_probs=109.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCC-------------------CCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ++..+|+++|+.++|||||+++|.........                   ...+.......+........++++|+||+
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH   80 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence            35789999999999999999999854321100                   00001111122221233467889999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      ..|.......+..+|++++|+|+.++.....  ...+..+...  ++|+++++||+|+...+.         ....++..
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~---------~~~~~~~~  147 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL---------EEIIEEIK  147 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH---------HHHHHHHH
T ss_pred             cceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH---------HHHHHHHH
Confidence            9888777777889999999999987754443  3455556666  899999999999973211         01112222


Q ss_pred             -HHHHHhC-----CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          145 -ELRKLIG-----SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       145 -~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                       .+.+..+     ..|++++||.+|.|++++++.+.+.+.
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence             3434443     347999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.4e-21  Score=154.20  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=109.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----cc---ccCCCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~   77 (197)
                      ...|+|+|.|++|||||+++|+.... ..+++.|+.......+...+  ..+++||+||.....    .+   ...+++.
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            35799999999999999999987543 34556666554455555655  567899999963211    11   1224578


Q ss_pred             CcEEEEEEeCCCH----hHHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCccCCcccccCCCCCccccHH
Q 029215           78 ADVFILAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA  141 (197)
Q Consensus        78 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  141 (197)
                      ++++++|+|+++.    +.+.+. ..+...+..+.            .+.|+++|+||+|+.+...           ..+
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l~e  304 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------LAE  304 (500)
T ss_pred             cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------HHH
Confidence            9999999999853    233333 33433333322            3789999999999965322           122


Q ss_pred             HHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          142 QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .........+. +++++||+++.|+++++.+|.+.+...+
T Consensus       305 ~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        305 FVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            22333334465 8999999999999999999999876543

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=1.4e-21  Score=142.32  Aligned_cols=164  Identities=16%  Similarity=0.182  Sum_probs=121.4

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc--------ccc
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLR   71 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~   71 (197)
                      ...+.--|+++|.|++|||||+|++++...  ..+.+.|+.......+..++  ..+.|+||||...-.        ...
T Consensus         2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence            345677899999999999999999998764  45556666777777776665  667799999954322        122


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+..+|+++||+|+++.....+  +..++.+...  +.|+++++||+|......          ........+.....
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~  145 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLP  145 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCC
Confidence            345788999999999988544332  3445555553  789999999999877542          22344444445566


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +..++++||+.|.|++.+.+.+...+...+
T Consensus       146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         146 FKEIVPISALKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             cceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence            668899999999999999999999887654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=7.3e-22  Score=141.38  Aligned_cols=117  Identities=18%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      ..+.||||||++.|...+...+.++|++++|+|++++. ..+.. . .+..+... ...|+++|+||+|+.....     
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~-~-~l~~~~~~-~~~~iiivvNK~Dl~~~~~-----  154 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS-E-HLAALEIM-GLKHIIIVQNKIDLVKEEQ-----  154 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH-H-HHHHHHHc-CCCcEEEEEEchhccCHHH-----
Confidence            57889999999988777777788899999999998741 11111 2 22222222 1347999999999965321     


Q ss_pred             CCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          133 PGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                         .....++++++...+  ...+++++||++|.|++++|+++.+.+..++
T Consensus       155 ---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~  202 (203)
T cd01888         155 ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP  202 (203)
T ss_pred             ---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence               001123333443332  1237999999999999999999998887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=8.9e-22  Score=161.61  Aligned_cols=157  Identities=16%  Similarity=0.222  Sum_probs=111.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee---eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      .+..+|+++|..++|||||+++|....+.....+...   ..+.......+....+.||||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3567999999999999999999988766443332221   1122223333445788999999999999998888999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-------HHHhC-C
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-------RKLIG-S  152 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~  152 (197)
                      +++|+|++++...+.. ..| ..+...  ++|+++++||+|+....             .+.+.+.       ...++ .
T Consensus       322 aILVVDA~dGv~~QT~-E~I-~~~k~~--~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~  384 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAI-NYIQAA--NVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGD  384 (742)
T ss_pred             EEEEEECcCCCChhhH-HHH-HHHHhc--CceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCC
Confidence            9999999886433333 222 223333  79999999999986531             1111111       22233 3


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      .+++++||++|.|++++++++....
T Consensus       385 vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        385 TPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ceEEEEECCCCCCHHHHHHhhhhhh
Confidence            4899999999999999999998764

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=2.1e-21  Score=152.09  Aligned_cols=156  Identities=20%  Similarity=0.180  Sum_probs=107.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc--ccccc------CCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~~~   77 (197)
                      .+|+++|.+|+|||||+|+|++..+. .+..+++.+.....+...+. ..+.+|||+|....  ..++.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999986542 23344444444445555442 25679999997432  11221      23578


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...             ... . ....+...++
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-------------~~~-~-~~~~~~~~~v  340 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-------------PRI-D-RDEENKPIRV  340 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-------------HHH-H-HHhcCCCceE
Confidence            9999999999998877765 44444444433 3799999999999864211             001 1 1123442358


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++||++|.|++++++++.+.+..
T Consensus       341 ~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999998854

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=1.3e-21  Score=139.41  Aligned_cols=161  Identities=18%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc----------ccccccc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP   72 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~   72 (197)
                      ....++|+++|.+|+|||||++++.+..+.....++.+..........+  ..+.+|||||..          .+..+..
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            3456899999999999999999999876444444443222211111112  568899999953          2222222


Q ss_pred             CCC---CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           73 LSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        73 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .++   ...+++++++|.+++.+....  .+...+...  +.|+++++||+|+.+...        .....+.+......
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~  166 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF  166 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence            233   345788899998876443322  222333333  789999999999865321        00112223333333


Q ss_pred             hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          150 IGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ... +++++||+++.|++++++.|.+.+.
T Consensus       167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        167 GDD-EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            333 8899999999999999999987764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.88  E-value=3.9e-22  Score=142.64  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=88.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCC-cEEEEEEe
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d   86 (197)
                      +|+++|+++||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|||+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988766554443222222222123346788999999999988888888888 99999999


Q ss_pred             CCCH-hHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccCC
Q 029215           87 LISK-ASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDD  125 (197)
Q Consensus        87 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~  125 (197)
                      +++. .++.+....+...+...   .+++|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9998 67777644544444332   258999999999998764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=3.4e-21  Score=159.42  Aligned_cols=159  Identities=17%  Similarity=0.228  Sum_probs=109.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+...|+++|+.++|||||+++|....+.....+.+. ......+.+++  ..++||||||++.|..++...+..+|+++
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678899999999999999999988776544333321 12123344455  56789999999999999888889999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHH--HHHHHHHHhC-CCeEEEec
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA--QGEELRKLIG-SPAYIECS  159 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~S  159 (197)
                      +|||++++...+.. ..| ......  ++|+++++||+|+.....        ..+..+  +...++..++ ..+++++|
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~~--~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvS  433 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKAA--GVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVS  433 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHhc--CCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEe
Confidence            99999885333322 222 223333  899999999999964211        001000  0011223333 24899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 029215          160 SKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~  176 (197)
                      |++|.|++++|++|...
T Consensus       434 AktG~GI~eLle~I~~~  450 (787)
T PRK05306        434 AKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCCchHHHHhhhhh
Confidence            99999999999999864

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=6.4e-22  Score=139.14  Aligned_cols=151  Identities=16%  Similarity=0.126  Sum_probs=95.8

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEECCeEEEEEEEEcCCccc----------cccc
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRL   70 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~----------~~~~   70 (197)
                      ++...++|+++|.+|+|||||++++.+..+.....++...... ..+..++   .+.+|||||...          +..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            4567899999999999999999999987643333333222111 1122232   578999999532          2222


Q ss_pred             ccCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           71 RPLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        71 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ...+++   .++++++|+|++++-+..+.  .+...+...  +.|+++++||+|+.....        .....+++++..
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~l  158 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKAL  158 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHHH
Confidence            223333   46899999999876544443  333444444  799999999999964321        012234444454


Q ss_pred             HHhCC-CeEEEeccCCCCCHH
Q 029215          148 KLIGS-PAYIECSSKTQQNVK  167 (197)
Q Consensus       148 ~~~~~-~~~~~~Sa~~~~~i~  167 (197)
                      ...+. .+++++||++|+|++
T Consensus       159 ~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       159 KKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             hhccCCCceEEEECCCCCCCC
Confidence            44432 279999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=4.5e-21  Score=148.63  Aligned_cols=161  Identities=19%  Similarity=0.182  Sum_probs=113.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----c---ccCCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~   78 (197)
                      -.|+++|.|+||||||+|+|+.... ...++.|+.......+...+. ..+.++||||...-.+    +   ...+++.+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3689999999999999999987543 345566665555555555432 3577999999753211    1   12346789


Q ss_pred             cEEEEEEeCC---CHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           79 DVFILAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        79 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++++|+|++   +.+.++.. ..|+..+..+.   .+.|+++|+||+|+.....           ..+....+.+..+.
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~  306 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGW  306 (390)
T ss_pred             CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCC
Confidence            9999999998   44555555 66766666654   3789999999999864321           23344455555443


Q ss_pred             -CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          153 -PAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                       .+++++||+++.|+++++++|.+.+...
T Consensus       307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        307 EGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence             2689999999999999999999988654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=2e-21  Score=161.60  Aligned_cols=157  Identities=22%  Similarity=0.233  Sum_probs=113.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----------cccc-c
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL-R   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~-~   71 (197)
                      ..++|+++|.++||||||+++|++...  ..++.+|+.+.+...+..++..  +.+|||||..+          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999998763  4566777766666666777754  45999999642          1111 1


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHH-
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL-  149 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  149 (197)
                      ...++.+|++++|+|++++.+.++. . +...+...  ++|+++|+||+|+.+...            .+... .+... 
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~~--~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l  590 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVDA--GRALVLVFNKWDLMDEFR------------RQRLERLWKTEF  590 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHHc--CCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence            2346789999999999998877776 3 44444444  799999999999965321            11111 12222 


Q ss_pred             --hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          150 --IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       150 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                        ....+.+++||++|.|++++++.+.+.+..
T Consensus       591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence              233477899999999999999999998765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.4e-21  Score=152.20  Aligned_cols=160  Identities=20%  Similarity=0.217  Sum_probs=110.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------c
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~   71 (197)
                      ..++|+++|.+++|||||++++++..  ......+++.+.....+..++  ..+.+|||||.......           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46999999999999999999999754  244555566555555555666  44569999996433221           1


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ..+++.+|++++|+|++++.+..+.  .+...+...  +.|+++++||+|+.+...        .....++........+
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--------~~~~~~~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT--------MEEFKKELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH--------HHHHHHHHHHhccccc
Confidence            2356789999999999998776654  444444444  799999999999964321        0001111111112223


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ..+++++||++|.|++++++.+.+...
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            458999999999999999999887653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=5.4e-21  Score=155.28  Aligned_cols=160  Identities=19%  Similarity=0.183  Sum_probs=111.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC---CCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.|+++|++++|||||+++|++.   .+..++..++ .+.....+..++  ..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47899999999999999999863   2322222222 222222344555  67889999999999888778888999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC---CCeEEEe
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG---SPAYIEC  158 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  158 (197)
                      +|+|++++...+..  ..+..+...  ++| +++|+||+|+.+...        .....+++..+....+   ..+++++
T Consensus        79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~v  146 (581)
T TIGR00475        79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKT  146 (581)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence            99999984322222  222233333  778 999999999975431        0012345556665553   2489999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ||++|.|++++++++.+.+...
T Consensus       147 SA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       147 SAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             eCCCCCCchhHHHHHHHHHHhC
Confidence            9999999999999998776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=6.1e-21  Score=155.22  Aligned_cols=164  Identities=18%  Similarity=0.199  Sum_probs=114.6

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----C---------CCceeeceeEEEEE---CCeEEEEEEEEcC
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----Y---------VPTVFDNFSANVVV---DGSTVNLGLWDTA   62 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----~---------~~t~~~~~~~~~~~---~~~~~~l~i~D~~   62 (197)
                      ..++.-+++++|+.++|||||+.+|+..  .+...     .         .+.+.......+.+   ++..+.+++||||
T Consensus         3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP   82 (600)
T PRK05433          3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP   82 (600)
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence            3445679999999999999999999753  22110     0         00000000111112   4556899999999


Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      |+.+|...+..+++.+|++++|+|++++...+.. ..|.... ..  +.|+++|+||+|+....            ....
T Consensus        83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~-~~--~lpiIvViNKiDl~~a~------------~~~v  146 (600)
T PRK05433         83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLAL-EN--DLEIIPVLNKIDLPAAD------------PERV  146 (600)
T ss_pred             CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH-HC--CCCEEEEEECCCCCccc------------HHHH
Confidence            9999998888899999999999999987665554 4443322 22  78999999999986431            1222


Q ss_pred             HHHHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          143 GEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       143 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ..++...++..  .++++||++|.|+++++++|.+.+..+.
T Consensus       147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            23444445542  4899999999999999999999887654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.87  E-value=4e-21  Score=155.25  Aligned_cols=167  Identities=18%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee----ce-eEEEE------------ECCeEEEEEEEEcCCcccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD----NF-SANVV------------VDGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~----~~-~~~~~------------~~~~~~~l~i~D~~G~~~~   67 (197)
                      +..-|+++|.+++|||||+++|.+..+.....++...    .+ .....            +......+.||||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            3456999999999999999999987765443332211    11 10000            0000113789999999999


Q ss_pred             cccccCCCCCCcEEEEEEeCCCH---hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC-------CCCcc
Q 029215           68 NRLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH-------PGAVP  137 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-------~~~~~  137 (197)
                      ..++..+++.+|++++|+|+++.   +++...     ..+...  ++|+++++||+|+.+........       .....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            99888888999999999999974   443332     233333  78999999999996421100000       00000


Q ss_pred             c-------cHHHHHHHHH-------------HhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          138 I-------TTAQGEELRK-------------LIGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       138 ~-------~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +       ......++.+             ..+..+++++||++|+|+++++.++.....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence            0       0000111111             123358999999999999999999876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=8.4e-21  Score=157.94  Aligned_cols=153  Identities=19%  Similarity=0.195  Sum_probs=108.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc--------cccccCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~   75 (197)
                      ..+|+++|.++||||||+|+|++...  .+..++++.+........++  ..+.+|||||.+..        ......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            46899999999999999999997653  34445555555444555556  46779999997632        12223456


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +.+|++++|+|+++.....+  ..|...+...  +.|+++|+||+|+....              .....+. ..+....
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~--------------~~~~~~~-~lg~~~~  413 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE--------------YDAAEFW-KLGLGEP  413 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch--------------hhHHHHH-HcCCCCe
Confidence            88999999999987533222  3555566554  89999999999985421              1112222 2343356


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++||++|.|+.++|+++++.+..
T Consensus       414 ~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        414 YPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             EEEECCCCCCchHHHHHHHHhccc
Confidence            799999999999999999998865

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=6.8e-21  Score=145.89  Aligned_cols=151  Identities=20%  Similarity=0.200  Sum_probs=118.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc--cc-------ccCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--RL-------RPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--~~-------~~~~~   75 (197)
                      ..|+++|-|+||||||+|||.+..  ..+++++++.+.......+.+..  +.++||+|.+...  .+       ....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            679999999999999999999875  46888899988888888888854  7799999987433  11       23346


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +.||+++||+|...+-+..+.  .+...++..  ++|+++|+||+|-..               .++...-...+|....
T Consensus        82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~---------------~e~~~~efyslG~g~~  142 (444)
T COG1160          82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLK---------------AEELAYEFYSLGFGEP  142 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCch---------------hhhhHHHHHhcCCCCc
Confidence            789999999999886555543  555555544  799999999999742               2333333455677689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +.+||..|.|+.++++++++.+.
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC
Confidence            99999999999999999999984

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=7.1e-21  Score=154.71  Aligned_cols=145  Identities=17%  Similarity=0.240  Sum_probs=106.6

Q ss_pred             CCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc------ccCCC--CCCcEEEE
Q 029215           13 GDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL   83 (197)
Q Consensus        13 G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~i~   83 (197)
                      |.+|+|||||+|++.+... ..++++++.+.....+..++.  .+++|||||++.+...      .+.++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998765 344555555555555666664  5679999999877653      22222  46899999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+|+++.+..    ..+...+.+.  +.|+++|+||+|+.+...          +. .+.+.+.+..+. +++++||++|
T Consensus        79 VvDat~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg  140 (591)
T TIGR00437        79 VVDASNLERN----LYLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG  140 (591)
T ss_pred             EecCCcchhh----HHHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence            9999875432    1222233333  899999999999965432          22 346778888887 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIKVV  177 (197)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (197)
                      .|++++++++.+.+
T Consensus       141 ~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       141 RGIERLKDAIRKAI  154 (591)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998865

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=9e-20  Score=132.89  Aligned_cols=149  Identities=19%  Similarity=0.233  Sum_probs=102.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-------cccCCCCCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~~   79 (197)
                      +++++|++|+|||||+++|.+... ...+..++.......+...+  ..+++||+||+.....       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999997652 33445555444455555666  5678999999754331       1234678999


Q ss_pred             EEEEEEeCCCHhH-HHHHHHHHH-----------------------------------------HHHhhh----------
Q 029215           80 VFILAFSLISKAS-YENVAKKWI-----------------------------------------PELRHY----------  107 (197)
Q Consensus        80 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~----------  107 (197)
                      ++++|+|+++++. .+.+ ...+                                         ..+.++          
T Consensus        80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987653 2222 1111                                         111111          


Q ss_pred             ---------------CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHH
Q 029215          108 ---------------APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA  172 (197)
Q Consensus       108 ---------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  172 (197)
                                     ..-+|+++|+||+|+..               .+++..+++.   .+++++||+++.|++++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~  220 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER  220 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence                           12368999999999843               3444444432   36899999999999999999


Q ss_pred             HHHHH
Q 029215          173 AIKVV  177 (197)
Q Consensus       173 i~~~~  177 (197)
                      +.+.+
T Consensus       221 i~~~L  225 (233)
T cd01896         221 IWDKL  225 (233)
T ss_pred             HHHHh
Confidence            98865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=7.2e-21  Score=150.29  Aligned_cols=161  Identities=14%  Similarity=0.110  Sum_probs=102.5

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCC--CCCC------------------------------CCCceeeceeEEEE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVV   48 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~   48 (197)
                      |+++..++|+++|++++|||||+++|+...  ....                              ..+++.+.....+ 
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~-   79 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF-   79 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE-
Confidence            788899999999999999999999998421  1110                              1112212222223 


Q ss_pred             ECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215           49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  128 (197)
                       ....+.+.+|||||++.|.......+..+|++++|+|+++...+.......+..+... ...|+++++||+|+..... 
T Consensus        80 -~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~-  156 (425)
T PRK12317         80 -ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE-  156 (425)
T ss_pred             -ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH-
Confidence             3334778899999998887655556788999999999987211211112222233333 1246899999999964211 


Q ss_pred             ccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHHHH
Q 029215          129 FIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  170 (197)
                           .......+++.++....+.    .+++++||++|+|+++..
T Consensus       157 -----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        157 -----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             -----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                 0000123455566665553    378999999999998743

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.7e-20  Score=128.79  Aligned_cols=151  Identities=21%  Similarity=0.199  Sum_probs=102.0

Q ss_pred             EECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc-------CCCCCCcEE
Q 029215           11 TVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF   81 (197)
Q Consensus        11 v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~~~~~~~   81 (197)
                      ++|++|+|||||++++.+....  ....+++............ ...+.+||+||...+.....       ..+..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999876443  2223333333333333221 35788999999876654332       356789999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH--HHHHHHHhCCCeEEEec
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ--GEELRKLIGSPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S  159 (197)
                      ++++|+++....... . +.......  +.|+++|+||+|+.....          .....  ...........+++++|
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~~--~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRER--GKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHhc--CCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence            999999998776665 2 33333333  899999999999976432          11110  11222233344899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 029215          160 SKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~  176 (197)
                      |+++.|++++++++.+.
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.5e-21  Score=130.47  Aligned_cols=162  Identities=27%  Similarity=0.416  Sum_probs=135.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++++++|..|.||||++.+...+.|...+.+|.+...... +..+...+++..|||.|++.+..+...++-++.+.++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            379999999999999999999999999999999986555443 3334446999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      +||++.+-+.... ..|...+...+.++|+++.|||.|.....            .......+-+..++ .++++||+.+
T Consensus        89 mFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn  154 (216)
T KOG0096|consen   89 MFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSN  154 (216)
T ss_pred             Eeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeecccc
Confidence            9999999999998 89998888888899999999999986542            11222234444555 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      .|.+.-|-|+++.+.-.
T Consensus       155 ~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  155 YNFERPFLWLARKLTGD  171 (216)
T ss_pred             cccccchHHHhhhhcCC
Confidence            99999999999987543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=6.1e-20  Score=152.61  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=112.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc----------C
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------L   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~----------~   73 (197)
                      +.++|+++|.+|||||||+|++++... ..++++++.+.....+..++  ..+++|||||...+.....          .
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHH
Confidence            357899999999999999999987543 34555555544444444444  5677999999987654211          1


Q ss_pred             C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           74 S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +  ...+|++++|+|+++.+...    .+...+.+.  +.|+++++||+|+.+...          + ..+.+++.+.++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG  142 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLG  142 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhC
Confidence            2  24789999999999865432    233344444  899999999999875432          2 345677888889


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      . |++++||+++.|++++.+.+.+..
T Consensus       143 ~-pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        143 C-PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             C-CEEEEEeecCCCHHHHHHHHHHhh
Confidence            7 999999999999999999998765

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.85  E-value=2.2e-20  Score=122.67  Aligned_cols=167  Identities=25%  Similarity=0.534  Sum_probs=134.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .++|.++|.+..|||||+-.+.++.+.+.+..+.+.. ....+.+.+..+.+.+||++|++++....+....++.+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            6899999999999999999999998876666565444 456788899999999999999999999999889999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||.+.+.++..+ ..|.+..+.... .+| ++||+|.|+.-...     ++..+....+++..++-++. +.+.+|+...
T Consensus       100 FDLt~r~TLnSi-~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s  171 (205)
T KOG1673|consen  100 FDLTRRSTLNSI-KEWYRQARGLNKTAIP-ILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS  171 (205)
T ss_pred             EecCchHHHHHH-HHHHHHHhccCCccce-EEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence            999999999999 899888777653 344 67899999754321     00011233456677777887 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      -++.++|.-+...+..-
T Consensus       172 INv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNL  188 (205)
T ss_pred             ccHHHHHHHHHHHHhCC
Confidence            99999999888877653

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=3.8e-19  Score=136.40  Aligned_cols=158  Identities=21%  Similarity=0.250  Sum_probs=122.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------c
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~   71 (197)
                      ..++|+++|-|++|||||+|++++..  ...+..+|+.+.+...+..++..+.  ++||+|..+-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence            47999999999999999999999865  4677888999999999999996655  9999995432211           1


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHH----HHHHHH
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA----QGEELR  147 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~  147 (197)
                      ...+..++.+++|+|++.+-+-++.  .+...+.+.  +.+++||.||.|+.+...          ...+    +.....
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l  320 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL  320 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence            2235679999999999998776665  666677766  899999999999977532          2233    333333


Q ss_pred             HHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          148 KLIGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ...++.+.+.+||++|.|+.++|+.+.+...
T Consensus       321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             ccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            4456668999999999999999999887653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=2.9e-19  Score=121.05  Aligned_cols=156  Identities=21%  Similarity=0.237  Sum_probs=117.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--------CCCCCC---ce-eeceeEEEEECCeEEEEEEEEcCCcccccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--------PTDYVP---TV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~~~~~~---t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~   71 (197)
                      ....||+|.|+.++||||+++++.....        ...+..   |+ ...+......++  ..+.++|||||++|.-+|
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc--ceEEEecCCCcHHHHHHH
Confidence            3568999999999999999999987653        111111   22 222222222222  456799999999999999


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-  150 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (197)
                      .-.++.+.++++++|.+.+..+ .. ..++..+....+ +|++|++||.|+...            ...+.++++...- 
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~~~  150 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKLEL  150 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHhcc
Confidence            9999999999999999999888 33 466666666532 999999999999876            3456666555544 


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          151 GSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      --.+.++.+|.++++..+.++.+...
T Consensus       151 ~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         151 LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CCCceeeeecccchhHHHHHHHHHhh
Confidence            23489999999999999999998876

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=139.60  Aligned_cols=153  Identities=25%  Similarity=0.301  Sum_probs=116.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (197)
                      .-++++++|.|++|||||+|.|.+..  ...+.++|+.+.....+.++|  +.+.+.||+|..+.....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            35899999999999999999999764  467889999999999999999  677799999987554332        234


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +++||.+++|+|.+.+.+-.+.  ..+.   ....+.|+++|.||.|+.....            .   ... +...-.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~------------~---~~~-~~~~~~~  352 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE------------L---ESE-KLANGDA  352 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc------------c---chh-hccCCCc
Confidence            6789999999999986333332  2222   2224799999999999976532            1   111 1222227


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .+.+|+++|.|++.+.+.|.+.+...
T Consensus       353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         353 IISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             eEEEEecCccCHHHHHHHHHHHHhhc
Confidence            89999999999999999999887655

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.83  E-value=7.3e-20  Score=118.43  Aligned_cols=156  Identities=22%  Similarity=0.298  Sum_probs=116.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|-.++|||||+..|.+....+ ..+|.  -+..........+.+++||.+|+...+..|..|+++.|++||
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~--GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTN--GFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhh-ccccC--CcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            467999999999999999999997754322 22232  222222223445899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-------CCeE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-------SPAY  155 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  155 (197)
                      |+|.+|...|+++-..+.+.+.+.. ..+|+.|..||.|+...-.               +...+...+       .-.+
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~---------------~eeia~klnl~~lrdRswhI  156 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK---------------VEEIALKLNLAGLRDRSWHI  156 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc---------------hHHHHHhcchhhhhhceEEe
Confidence            9999999999988777777766554 6899999999999864421               112222211       1134


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      -++||..++|+.+-.+|+....
T Consensus       157 q~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  157 QECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             eeCccccccCccCcchhhhcCC
Confidence            5799999999998888887654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=1.2e-19  Score=143.43  Aligned_cols=157  Identities=14%  Similarity=0.088  Sum_probs=101.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh--CCCCCC------------------------------CCCceeeceeEEEEEC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------------YVPTVFDNFSANVVVD   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~   50 (197)
                      +...++|+++|+.++|||||+.+|+.  +.+...                              ..+.+.+...  ....
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence            45679999999999999999999985  222110                              0011111111  2233


Q ss_pred             CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  129 (197)
                      ...+.++||||||++.|.......+..+|++++|+|+++++++... ...+...... ....|+++++||+|+.+...  
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~--  158 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDE--  158 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccH--
Confidence            3347888999999998876666667889999999999988543211 0111122222 22357899999999964211  


Q ss_pred             cCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215          130 IDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (197)
                          ........+++++++..+.    .+++++||++|.|+.+
T Consensus       159 ----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       159 ----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                0001224566667776653    3789999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=1.2e-19  Score=147.22  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh--CCCCCCCC---------------CceeeceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYV---------------PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~--~~~~~~~~---------------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (197)
                      +|+++|+.++|||||+++|+.  +.+.....               +.+.......+...+  +.+++|||||+.+|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            799999999999999999985  33322110               000011112233344  78889999999999988


Q ss_pred             ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-
Q 029215           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-  149 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (197)
                      +..+++.+|++++|+|+++....+.  ..|+..+...  ++|+++++||+|+...+.         ....++...+... 
T Consensus        81 v~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~  147 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAEL  147 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhh
Confidence            8888999999999999987543222  4555555555  799999999999865321         0112333333322 


Q ss_pred             ------hCCCeEEEeccCCCC----------CHHHHHHHHHHHHcCCc
Q 029215          150 ------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       150 ------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  181 (197)
                            ..+ |++++||++|.          |+..+|+.+.+.+..+.
T Consensus       148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence                  233 78999999996          79999999999987664

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=3.5e-19  Score=144.51  Aligned_cols=163  Identities=15%  Similarity=0.148  Sum_probs=112.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh--CCCCCCCC------------Cce-eeceeEEEEECCeEEEEEEEEcCCcccccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~~------------~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~   69 (197)
                      +.-+|+++|+.++|||||+++|+.  +.+.....            .+. .+.......+....+.+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457999999999999999999986  33432211            011 111122233344458889999999999999


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .+..+++.+|++++|+|+++....+..  .++..+...  ++|.++++||+|+.....         ....+++..+...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~  150 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN  150 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence            888999999999999999886444332  333333444  789999999999865321         0112233333211


Q ss_pred             -------hCCCeEEEeccCCCC----------CHHHHHHHHHHHHcCCc
Q 029215          150 -------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       150 -------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  181 (197)
                             ..+ |++.+||++|.          |+..+++.|.+.+..+.
T Consensus       151 l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        151 LDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence                   233 78999999998          68999999999887664

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.82  E-value=7.9e-20  Score=121.13  Aligned_cols=136  Identities=21%  Similarity=0.208  Sum_probs=97.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----ccccCCCCCCcEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~~~~~~~~~~~~i~   83 (197)
                      ||+++|+.|+|||||+++|.+...  .+..|..      +.+     .=.++||||.....    .-......+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999988654  2222221      111     11379999954221    111223358999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      +.|++++.+.-.  ..+...+     +.|++-|+||+|+..+.           ...+.++++.+.-|....|++|+.+|
T Consensus        70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            999998754321  1222221     68999999999998432           35678888888889988999999999


Q ss_pred             CCHHHHHHHHH
Q 029215          164 QNVKAVFDAAI  174 (197)
Q Consensus       164 ~~i~~~~~~i~  174 (197)
                      +|++++.++|.
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=2.9e-19  Score=126.70  Aligned_cols=148  Identities=20%  Similarity=0.192  Sum_probs=96.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC------------CCC-----CCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF------------PTD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~------------~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      .++|+++|..++|||||+++|+....            .+.     ..+.+...  ...........+.++||||+..|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence            58999999999999999999975310            000     11111111  122223334567899999998877


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ......+..+|++++|+|+..+...+.  ...+..+...  ++| +++++||+|+.....       ......+++..+.
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l  148 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELL  148 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHH
Confidence            666677889999999999987643332  3444455555  677 778999999864221       0111233455555


Q ss_pred             HHhCC----CeEEEeccCCCCCH
Q 029215          148 KLIGS----PAYIECSSKTQQNV  166 (197)
Q Consensus       148 ~~~~~----~~~~~~Sa~~~~~i  166 (197)
                      ...+.    .+++++||++|.++
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            55543    58999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2e-20  Score=121.36  Aligned_cols=160  Identities=16%  Similarity=0.178  Sum_probs=120.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +..+++++|-.|+||||+.-++.-++... ..|+++....   .+..+++.+++||+.|+-..+..|+.++.+.+++|||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            67899999999999999998887766533 3344432221   1233558899999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH---HHH-HhCCCeEEEec
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE---LRK-LIGSPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~S  159 (197)
                      +|.+|+........++...+.+.. .+..+++++||.|.....            ...++..   +-+ +.....++++|
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~~Iv~tS  160 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIWQIVKTS  160 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhheeEEEeec
Confidence            999999887766567777776655 567788999999986542            2222211   111 11223789999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 029215          160 SKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~  180 (197)
                      |.+|+|++..++|+.+.+..+
T Consensus       161 A~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  161 AVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             cccccCCcHHHHHHHHHHhcc
Confidence            999999999999999887653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=5.6e-19  Score=144.07  Aligned_cols=159  Identities=18%  Similarity=0.186  Sum_probs=104.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC---CCCCCC--CCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN---TFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~---~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      -|+++|+.++|||||+++|++.   .+.+..  ..|+...+......++  ..+.||||||++.|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            5889999999999999999853   222221  2222222221111133  34789999999998776667788999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC--CeEEEec
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS--PAYIECS  159 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~S  159 (197)
                      +|+|++++..-+..  +.+..+...  ++| +++|+||+|+.+...        .....+++..+....+.  .+++++|
T Consensus        80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VS  147 (614)
T PRK10512         80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTA  147 (614)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence            99999875332222  223334333  566 579999999965321        00123444555544442  4899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 029215          160 SKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~  180 (197)
                      |++|.|++++++.|.+.....
T Consensus       148 A~tG~gI~~L~~~L~~~~~~~  168 (614)
T PRK10512        148 ATEGRGIDALREHLLQLPERE  168 (614)
T ss_pred             CCCCCCCHHHHHHHHHhhccc
Confidence            999999999999998765443

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.81  E-value=3.6e-19  Score=129.95  Aligned_cols=168  Identities=18%  Similarity=0.107  Sum_probs=108.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCC-C-----CCCCceee-----------ceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFP-T-----DYVPTVFD-----------NFSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~-~-----~~~~t~~~-----------~~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (197)
                      +|+++|+.|+|||||+++|+...-. .     ....+..+           ..............+++|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753110 0     00000000           01111222223367889999999999888


Q ss_pred             ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc---------------cCC---
Q 029215           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF---------------IDH---  132 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---------------~~~---  132 (197)
                      +..+++.+|++++|+|+++......  ..+...+...  ++|+++++||+|+.......               ...   
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~  156 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL  156 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence            8888999999999999998754432  4555555555  89999999999987431110               000   


Q ss_pred             -----------------------------CCCccccHHHHHHH----HHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          133 -----------------------------PGAVPITTAQGEEL----RKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       133 -----------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                                                   -+....+.+++..-    .......|++..||.++.|+..+++.+.+.+..
T Consensus       157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~  236 (237)
T cd04168         157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT  236 (237)
T ss_pred             eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence                                         00011222222221    122334578888999999999999999988754

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=2.9e-19  Score=128.41  Aligned_cols=151  Identities=18%  Similarity=0.112  Sum_probs=93.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC--CCCC------------------------------CCCceeeceeEEEEECCeEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVDGSTVN   55 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~   55 (197)
                      ||+++|++++|||||+++|+...  ....                              ..+++.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            68999999999999999987432  1100                              01111111122233334  46


Q ss_pred             EEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC
Q 029215           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  135 (197)
                      +.+|||||+++|.......+..+|++++|+|++++..-...  .....+... ...++++|+||+|+.....      ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~  149 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------EV  149 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------HH
Confidence            77999999988766566678899999999999876432222  222222222 1235778999999864211      00


Q ss_pred             ccccHHHHHHHHHHhCC--CeEEEeccCCCCCHHHH
Q 029215          136 VPITTAQGEELRKLIGS--PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~  169 (197)
                      ......+.+.+.+.++.  .+++++||++|.|+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            00122345556666664  35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.81  E-value=1.9e-19  Score=141.14  Aligned_cols=164  Identities=17%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC------ceeece-----------------eEEEEECC------eEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP------TVFDNF-----------------SANVVVDG------STV   54 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~------t~~~~~-----------------~~~~~~~~------~~~   54 (197)
                      ...++|+++|..++|||||+++|.... .+.+..      |....+                 ......++      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            457899999999999999999996431 111111      110000                 00000011      135


Q ss_pred             EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      .+++||+||+++|...+...+..+|++++|+|++++. ..+.  ...+..+... ...|+++++||+|+.+...      
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt--~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~------  151 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT--KEHLMALEII-GIKNIVIVQNKIDLVSKEK------  151 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch--HHHHHHHHHc-CCCeEEEEEEccccCCHHH------
Confidence            7889999999999877777777899999999999653 1111  1222233222 1346899999999975321      


Q ss_pred             CCccccHHHHHHHHHHh---CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          134 GAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                        .....+++..+....   +. +++++||++|+|+++++++|...+..+
T Consensus       152 --~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~~  198 (406)
T TIGR03680       152 --ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPTP  198 (406)
T ss_pred             --HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCCC
Confidence              001123344444332   33 899999999999999999999876543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=8e-19  Score=142.48  Aligned_cols=167  Identities=19%  Similarity=0.216  Sum_probs=102.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce----eece-eEEEE--ECCeE-----E-----EEEEEEcCCccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNF-SANVV--VDGST-----V-----NLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~----~~~~-~~~~~--~~~~~-----~-----~l~i~D~~G~~~   66 (197)
                      .++..|+++|++++|||||+++|.+..+.....+..    +..+ .....  ..+..     .     .+.||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            455679999999999999999998765443333221    1111 10000  00111     1     267999999999


Q ss_pred             ccccccCCCCCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC----C--CCC-c
Q 029215           67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID----H--PGA-V  136 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~----~--~~~-~  136 (197)
                      |..++...+..+|++++|+|+++   ++++..+     ..+...  ++|+++++||+|+.........    +  ... .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888889999999999998   4444433     223333  8999999999998532110000    0  000 0


Q ss_pred             ccc---HH---HH-HHHHH-------------HhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          137 PIT---TA---QG-EELRK-------------LIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       137 ~~~---~~---~~-~~~~~-------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      .+.   .+   +. ..+..             ..+..+++++||++|.|++++++.+...+
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            000   00   00 11110             11334789999999999999998886533

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=2.4e-19  Score=129.41  Aligned_cols=166  Identities=16%  Similarity=0.123  Sum_probs=101.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCC-----------CCce------eece---eEEEEE---CCeEEEEEEEEcCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----------VPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ   64 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------~~t~------~~~~---~~~~~~---~~~~~~l~i~D~~G~   64 (197)
                      +|+++|+.++|||||+++|+........           ..+.      +..+   ...+..   ++..+.+++|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432110           0000      0000   111111   345688999999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC--CCCCccccHHH
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQ  142 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~--~~~~~~~~~~~  142 (197)
                      ..|......++..+|++++|+|+++..+...  ..++......  +.|+++|+||+|+.........  .........++
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            9988777778889999999999988766543  2444444333  6899999999998521110000  00000011223


Q ss_pred             HHHHHHHhCC------Ce----EEEeccCCCCCHH--------HHHHHHHHHH
Q 029215          143 GEELRKLIGS------PA----YIECSSKTQQNVK--------AVFDAAIKVV  177 (197)
Q Consensus       143 ~~~~~~~~~~------~~----~~~~Sa~~~~~i~--------~~~~~i~~~~  177 (197)
                      +..++...+.      .|    +++.|++.++++.        .+++.|...+
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence            3344444433      12    6788999988765        5666655544

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=6.2e-19  Score=122.30  Aligned_cols=155  Identities=17%  Similarity=0.117  Sum_probs=96.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCccc----------ccccccCCC-
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSY-   75 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~-   75 (197)
                      .|+++|.+|+|||||++.+.++.+.....++..... ...+..++   .+.+|||||...          +......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996655444444432211 22222232   778999999533          222222222 


Q ss_pred             --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCC
Q 029215           76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGS  152 (197)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (197)
                        .+++++++++|..+..+...  ......+...  +.|+++++||+|+.....        ............+ ....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~  145 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID  145 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence              35678999999876532222  1222333333  689999999999854321        0011122222222 2444


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      .+++++||+++.|+.+++++|.+.+
T Consensus       146 ~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         146 PPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             CceEEEecCCCCCHHHHHHHHHHhC
Confidence            5889999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.81  E-value=1e-19  Score=142.23  Aligned_cols=165  Identities=27%  Similarity=0.390  Sum_probs=126.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|..|+|||||+-.+....+.+.-++-. ...+...+...  .+...+.|++..+.-+.....-++.||++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            467999999999999999999999998877655443 12222223223  355679999877665555566678999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHHHh-CCCeEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLI-GSPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~  157 (197)
                      ++|+++++++.+.+...|+..+++..   .++|+|+||||+|......          .+.+. ...+...+ .+..+++
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie  154 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE  154 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence            99999999999999999999999988   6999999999999987643          11121 22222232 3346899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      |||++..++.++|....+++.++
T Consensus       155 cSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  155 CSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhhhHhhhhhhhheeecc
Confidence            99999999999999999988765

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.81  E-value=2.6e-19  Score=130.32  Aligned_cols=173  Identities=14%  Similarity=0.175  Sum_probs=106.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc--eeeceeEEEEECCeEEEEEEEEcCCccccc------------c
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYN------------R   69 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------~   69 (197)
                      .+.++|+|+|.|++|||||.|.+.+.....-....  +.......++...  ..+.|+||||.-.-.            .
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhh
Confidence            46899999999999999999999998765433333  3333333444344  677899999942111            1


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc------CCCCCccccHHHH
Q 029215           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI------DHPGAVPITTAQG  143 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~------~~~~~~~~~~~~~  143 (197)
                      .....+..||.+++++|+++....  +....+..+..+ .++|-++|.||.|.........      -+........+-.
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~--l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTP--LHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCc--cChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            122345689999999999963221  112333333333 2889999999999876533210      0000000011111


Q ss_pred             HHHHHHh---------C---CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          144 EELRKLI---------G---SPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       144 ~~~~~~~---------~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ..+...-         |   +..+|.+||++|+|++++-++++..+...+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            1111111         1   224788999999999999999999887654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=6.9e-19  Score=137.97  Aligned_cols=166  Identities=17%  Similarity=0.127  Sum_probs=103.1

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCC------Cceeece---eE----------EEEE----C--C----eE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFDNF---SA----------NVVV----D--G----ST   53 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~t~~~~~---~~----------~~~~----~--~----~~   53 (197)
                      +.+.++|+++|+.++|||||+.+|.+. +.+...      .|....+   ..          .+..    +  +    ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            456799999999999999999988542 111111      1111110   00          0000    0  1    12


Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      ..+++|||||++.|..........+|++++|+|++++. ..+.. ..+ ..+... ...|+++|+||+|+.+...     
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~-----  156 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHL-MALDII-GIKNIVIVQNKIDLVSKER-----  156 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHc-CCCcEEEEEEeeccccchh-----
Confidence            57889999999988765555566789999999999643 22221 111 222222 1246899999999965321     


Q ss_pred             CCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          133 PGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                         .....++++.+.+..  ...+++++||++|.|++++++.|.+.+..+
T Consensus       157 ---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~  203 (411)
T PRK04000        157 ---ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP  203 (411)
T ss_pred             ---HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence               001123444444332  123899999999999999999999877543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.80  E-value=3.1e-18  Score=123.97  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=97.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee--------------e-----ce--e------------------EEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------------D-----NF--S------------------ANVV   48 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~--------------~-----~~--~------------------~~~~   48 (197)
                      ||+++|+.++|||||+.+|..+.+.+.......              .     ..  .                  ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999997665331110000              0     00  0                  0111


Q ss_pred             ECCeEEEEEEEEcCCcccccccccCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215           49 VDGSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  126 (197)
                      ..  ...+.++||||++.|.......+  ..+|++++|+|+..+..-.+  ..++..+...  ++|+++|+||+|+.+..
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence            12  25677999999998865444334  36899999999987644333  3555556555  79999999999986432


Q ss_pred             ccccCCCCCccccHHHHHHHHHH-------------------------hCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215          127 QFFIDHPGAVPITTAQGEELRKL-------------------------IGSPAYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      ..        ....++..++...                         ....|+|.+||.+|.|++++...|..
T Consensus       155 ~~--------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 IL--------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HH--------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            10        0111122222211                         12348999999999999999877643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=1.4e-21  Score=132.01  Aligned_cols=167  Identities=27%  Similarity=0.456  Sum_probs=137.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .-++++|+|..|+|||+++.++....|...|..|++..+... ...+ ...+++++||+.||++|..+..-+++.+++.+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            458999999999999999999999888888888886555432 2233 34578999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC--C---CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA--P---GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++...+|+.. ..|.+.+....  |   -.|+++..||||......         ........++.++.|+...++
T Consensus       104 iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwte  173 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTE  173 (229)
T ss_pred             EEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceee
Confidence            99999999999988 88888776654  2   466788899999876532         112366778888999989999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +|++.+.++++.-..+++.+...-
T Consensus       174 ts~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  174 TSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             eccccccChhHHHHHHHHHHHhhc
Confidence            999999999999999999876543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.79  E-value=5e-18  Score=135.76  Aligned_cols=156  Identities=16%  Similarity=0.214  Sum_probs=122.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc------cCCC--C
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY--R   76 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~--~   76 (197)
                      ..+++++|.||||||||+|++++.. ..+++++.+-++....+...++.  +++.|+||........      +.++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            4569999999999999999999854 57889999988888888888865  5699999976544322      2222  3


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|+++-|+|+++.+.--.+.-    ++.+.  +.|++++.|++|......           ..-+..++.+..|. |++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyltl----QLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv  142 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLTL----QLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV  142 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHHH----HHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence            5799999999998865443322    33333  899999999999977643           33456788889998 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++||+.|.|++++.+.+.+....+.
T Consensus       143 ~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         143 PTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEeecCCCHHHHHHHHHHhccccc
Confidence            9999999999999999988766554

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=3.4e-18  Score=133.65  Aligned_cols=164  Identities=19%  Similarity=0.183  Sum_probs=107.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCC------------CC-----CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP------------TD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      .++.++|+++|+.++|||||+++|+.....            +.     ..+.+.+.  ....+......+.++||||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence            456899999999999999999999752110            00     11111111  122233333567799999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +|.......+..+|++++|+|++++...+.  ...+..+...  ++| +++++||+|+.+...       ......+++.
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~  155 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence            887666666778999999999987543333  2333444444  788 578899999864321       0001223555


Q ss_pred             HHHHHhCC----CeEEEeccCCCC--------CHHHHHHHHHHHHcC
Q 029215          145 ELRKLIGS----PAYIECSSKTQQ--------NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~~  179 (197)
                      .+....+.    .+++++||++|.        ++.++++.+.+.+..
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence            66555553    489999999983        678888888877653

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.78  E-value=4.4e-18  Score=121.30  Aligned_cols=170  Identities=14%  Similarity=0.156  Sum_probs=100.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee---cee-EEEEECCeEEEEEEEEcCCcccccc-----cccCCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFS-ANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYR   76 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~---~~~-~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~   76 (197)
                      +++|+++|.+|+|||||+|.+.+.........+...   ... ..+.. .....+.+|||||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986543221111110   001 11111 1123578999999753221     1122356


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC--ccccHHHHHHHHH----H-
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPITTAQGEELRK----L-  149 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~-  149 (197)
                      .+|+++++.+.    .+......|+..+...  +.|+++|+||+|+....... ..+..  .....++.++.+.    . 
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQR-SKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhc-cccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887432    2333335666677666  78999999999995432100 00000  0111122222222    2 


Q ss_pred             -hCCCeEEEeccC--CCCCHHHHHHHHHHHHcCCchh
Q 029215          150 -IGSPAYIECSSK--TQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       150 -~~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                       ...+++|.+|+.  .++++..+.+.++..+...++.
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence             234578999998  5799999999999998876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1.6e-18  Score=125.56  Aligned_cols=151  Identities=15%  Similarity=0.049  Sum_probs=90.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC--CCC-------------------------CC-----CCCceeeceeEEEEECCeEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN--TFP-------------------------TD-----YVPTVFDNFSANVVVDGSTVN   55 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~--~~~-------------------------~~-----~~~t~~~~~~~~~~~~~~~~~   55 (197)
                      +|+++|+.++|||||+.+|+..  ...                         +.     ..+++.+.....+...+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            5899999999999999988632  110                         00     11111111222333444  67


Q ss_pred             EEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-------HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  128 (197)
                      +++|||||+..|...+...++.+|++++|+|+++..       ..+.. ..+ ...... ...|+++++||+|+......
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLARTL-GVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHHHc-CCCeEEEEEEcccccccccc
Confidence            889999999877766666678899999999999852       11111 222 222222 23689999999999732100


Q ss_pred             ccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHH
Q 029215          129 FIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK  167 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (197)
                          ........+++..+....+.    .+++++||++|.|++
T Consensus       156 ----~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 ----EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                00000112233333444443    479999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=7.8e-18  Score=131.68  Aligned_cols=163  Identities=19%  Similarity=0.181  Sum_probs=106.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC-------C-----CCC-----CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT-------F-----PTD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~-----~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +++.++|+++|.+++|||||+++|+...       +     .+.     ..+.+.+.  ....+......+.|+||||++
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHH
Confidence            3568999999999999999999998521       0     000     11111111  112222233567799999998


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +|.......+..+|++++|+|+.+....+.  ...+..+...  ++|.+ +++||+|+.+...       .......++.
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~  155 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR  155 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence            887666677788999999999987543332  2334444444  78866 5799999964221       1112233566


Q ss_pred             HHHHHhCC----CeEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029215          145 ELRKLIGS----PAYIECSSKTQQ----------NVKAVFDAAIKVVL  178 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  178 (197)
                      .+...++.    .+++++||.+|.          ++.++++.|.+.+.
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            66666543    478999999984          67888888887764

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=6.4e-18  Score=132.23  Aligned_cols=149  Identities=20%  Similarity=0.164  Sum_probs=96.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC------------CCC-----CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT------------FPT-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +++.++|+++|+.++|||||+++|+...            ..+     ...+.+.+.  ....+......+.||||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence            4568999999999999999999997320            000     011111111  222333344677899999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .|.......+..+|++++|+|+.++...+..  ..+..+...  ++|.+ +++||+|+.+...       ......++++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~  155 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence            8876655566789999999999875433332  333344444  67866 6899999965321       0001223566


Q ss_pred             HHHHHhCC----CeEEEeccCCCC
Q 029215          145 ELRKLIGS----PAYIECSSKTQQ  164 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~~~~  164 (197)
                      .+.+.++.    .+++++||.+|.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            66766653    489999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.76  E-value=1.2e-17  Score=120.48  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=78.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC--CCCCCCCc----------------ee-eceeEEEEE------CCeEEEEEEEEcC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYVPT----------------VF-DNFSANVVV------DGSTVNLGLWDTA   62 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t----------------~~-~~~~~~~~~------~~~~~~l~i~D~~   62 (197)
                      +|+++|+.++|||||+.+|+...  .......+                .. ......+..      ++..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999997532  11110000                00 001111111      1346889999999


Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      |++.|......+++.+|++++|+|++++...+.. . .+......  ++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~-~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-T-VLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-H-HHHHHHHc--CCCEEEEEECCCcc
Confidence            9999998888889999999999999988666543 3 33333333  68999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=1.5e-17  Score=130.64  Aligned_cols=149  Identities=19%  Similarity=0.150  Sum_probs=96.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCC------------C-----CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP------------T-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      ++..++|+++|.+++|||||+++|+...-.            +     ...+.+.+..  ...+......+.|.||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~--~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTA--HVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEcc--EEEEccCCeEEEEEECCChH
Confidence            456899999999999999999999863110            0     0011111111  11222233566799999998


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .|.......+..+|++++|+|+.....-+.  ...+..+...  ++| +++++||+|+.+...       ......+++.
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~  155 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVR  155 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence            876666666788999999999987643333  2344445444  788 678899999975321       0011223555


Q ss_pred             HHHHHhCC----CeEEEeccCCCC
Q 029215          145 ELRKLIGS----PAYIECSSKTQQ  164 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~~~~  164 (197)
                      .+.+..+.    .+++++||.+|+
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhcc
Confidence            66565543    489999999886

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=5.6e-17  Score=118.78  Aligned_cols=155  Identities=17%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~~   78 (197)
                      -.+.++|.|++|||||++++..-+ -...|..|+.......+.+++. ..+.+-|+||.-+-.++.       -.+++.+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            467899999999999999998754 3567777774333333333332 237799999964433322       2346789


Q ss_pred             cEEEEEEeCCCH---hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ..++||+|++..   +-+++. +.+...+..+.   .+.|.+||+||+|+.+..             .+...++++...-
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~  341 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQN  341 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCC
Confidence            999999999988   666666 55555555544   589999999999996432             2234677777776


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHH
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ..++++||+.++|++++++.|.+.
T Consensus       342 ~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  342 PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CcEEEeeeccccchHHHHHHHhhc
Confidence            458999999999999999887653

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1e-16  Score=118.14  Aligned_cols=160  Identities=19%  Similarity=0.205  Sum_probs=115.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-----ccccC---CC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-----RLRPL---SY   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----~~~~~---~~   75 (197)
                      ....|+|.|.|+||||||++.+++-.. ..+|+.|+...+..++...+  .++|++||||.-+-.     .+-..   .+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            457899999999999999999998654 56788888777777777777  678899999943211     11000   11


Q ss_pred             -CCCcEEEEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           76 -RGADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        76 -~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                       +-+++++|++|.+..  -+.+.. ..++..+...+. .|+++|+||+|..+..            ..+++......-+.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~  310 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGG  310 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhcc
Confidence             236889999998763  455665 566667776664 8999999999997543            23444444555555


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .....+++..+.+++.+-..+...+.+.
T Consensus       311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         311 EEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ccccceeeeehhhHHHHHHHHHHHhhch
Confidence            4567889999999999888888876655

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=5.9e-17  Score=126.15  Aligned_cols=167  Identities=22%  Similarity=0.198  Sum_probs=117.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC-CCCC---------------CCC-ceeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTD---------------YVP-TVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~---------------~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (197)
                      ++.-++.|+-+-.-|||||..+|+.-. +.++               ..+ |........+..++..+.++++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            456689999999999999999998521 1111               111 11111122222347779999999999999


Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.....+.+..|+++++|+|++.+..-+.....|+ .++ .  +..+|.|+||+|+...+.         .....+..++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~l-Afe-~--~L~iIpVlNKIDlp~adp---------e~V~~q~~~l  204 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYL-AFE-A--GLAIIPVLNKIDLPSADP---------ERVENQLFEL  204 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHH-HHH-c--CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence            99999999999999999999999876666633333 222 2  788999999999987532         0111122222


Q ss_pred             HHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          147 RKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      ....+. +++.+||++|.|++++++.|++.+..+....
T Consensus       205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~  241 (650)
T KOG0462|consen  205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKGIR  241 (650)
T ss_pred             hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence            222233 6899999999999999999999998876443

>cd04169 RF3 RF3 subfamily

Probab=99.74  E-value=5.7e-17  Score=120.29  Aligned_cols=115  Identities=18%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC--CCCC--------CCCceee-----------ceeEEEEECCeEEEEEEEEcCCcc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVPTVFD-----------NFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~--~~~~--------~~~t~~~-----------~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      -+|+++|++|+|||||+++|+...  ....        ...+..+           .......+....+.+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997421  1100        0001110           011122233344788899999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +|.......++.+|++++|+|+++......  ..+.......  ++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence            887766667889999999999987643222  3344444444  8999999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.2e-16  Score=124.64  Aligned_cols=160  Identities=17%  Similarity=0.215  Sum_probs=115.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEECC-eEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .++.=|.++|+..-|||||+..+-.........+.+...+. ..+..+. ..-.+.|+|||||+.|..+..+-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            34567899999999999999999887776655555544433 3333331 234677999999999999998888999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-------h-CCC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------I-GSP  153 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~  153 (197)
                      ++|++++|.--.+..  +-+...+..  ++|+++++||+|..+.+             .+....-..+       | +..
T Consensus        83 ILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v  145 (509)
T COG0532          83 ILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDV  145 (509)
T ss_pred             EEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCce
Confidence            999999997444443  222333444  99999999999998543             2222222222       2 234


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .++++||++|.|++++++.+.-.....
T Consensus       146 ~~VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         146 IFVPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence            678999999999999999988776544

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.73  E-value=2.9e-17  Score=118.46  Aligned_cols=166  Identities=19%  Similarity=0.278  Sum_probs=100.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCC---CceeeceeEEEEECCeEEEEEEEEcCCccccccc-----ccCCCCCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----~~~~~~~~~   79 (197)
                      ||+++|+.+|||||+.+.++.+-.+.+..   +|.... ...+. ....+.+++||+||+..+...     ....+++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            79999999999999999998765433222   222111 12222 223368899999999755432     355678999


Q ss_pred             EEEEEEeCCCHhH---HHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC--CCe
Q 029215           80 VFILAFSLISKAS---YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPA  154 (197)
Q Consensus        80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  154 (197)
                      ++|||+|+.+.+-   +... ...+..+.+..|+..+.++++|+|+..+...    ..........+.+.+...+  ...
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r----~~~~~~~~~~i~~~~~~~~~~~~~  153 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSEDER----EEIFRDIQQRIRDELEDLGIEDIT  153 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-HHHH----HHHHHHHHHHHHHHHHHTT-TSEE
T ss_pred             EEEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCHHHH----HHHHHHHHHHHHHHhhhccccceE
Confidence            9999999984432   3333 4456666777799999999999999654320    0000011122333333444  126


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++.||.-+ ..+-+.+..+++.+....
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred             EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence            77777777 689999999999887543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.73  E-value=1.3e-16  Score=124.73  Aligned_cols=162  Identities=20%  Similarity=0.183  Sum_probs=104.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC------------C-----CCCCceeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP------------T-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (197)
                      +..++|+++|+.++|||||+++|+.....            +     ...+.+.+  .....+......+.++||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence            56799999999999999999999863110            0     01111111  11222322335677999999988


Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGEE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      |.......+..+|++++|+|+..+...+.  ..++..+...  ++|.+ +++||+|+.+...       .......++..
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~  156 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence            87666667789999999999987643333  3444455555  78976 5899999964221       00012234444


Q ss_pred             HHHHhCC----CeEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029215          146 LRKLIGS----PAYIECSSKTQQ----------NVKAVFDAAIKVVL  178 (197)
Q Consensus       146 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  178 (197)
                      +....+.    .+++++||.++.          ++..+++.|.+.+.
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            5444433    488999999875          56788888777654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=5.1e-17  Score=120.66  Aligned_cols=111  Identities=16%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC--CC------C-----------CCCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT--FP------T-----------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~--~~------~-----------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      +|+++|++++|||||+++|+...  ..      +           .....+.......+...+  +.+++|||||+..|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            58999999999999999997421  10      0           000111111122333444  677899999998888


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      ..+...++.+|++++|+|+.+...-..  ..+...+...  ++|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            888888999999999999987643333  2344445544  799999999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.73  E-value=9.8e-17  Score=128.90  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=78.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh--CCCC--C-------------CCCCce---eece-eEEEEECCeEEEEEEEEcCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS--NTFP--T-------------DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAG   63 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~--~~~~--~-------------~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G   63 (197)
                      +.-+|+|+|++++|||||.++|+.  +...  +             ++.+..   +..+ .....+....+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            467999999999999999999973  2110  0             000000   0011 11122233347788999999


Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      +.+|.......++.+|++++|+|+++......  ..+.......  ++|+++++||+|+..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence            99888766677889999999999987643222  3444444444  899999999999865

>PRK13351 elongation factor G; Reviewed

Probab=99.71  E-value=8.7e-17  Score=133.94  Aligned_cols=115  Identities=20%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--------C-----CC-------CCCceeeceeEEEEECCeEEEEEEEEcCC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--------P-----TD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~-----~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (197)
                      .+..+|+|+|+.++|||||+++|+...-        .     .+       +..|.... ...+...  .+.+++|||||
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~~~~~~~--~~~i~liDtPG   82 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-ATSCDWD--NHRINLIDTPG   82 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-eEEEEEC--CEEEEEEECCC
Confidence            4567999999999999999999985311        0     00       01111111 1123333  37888999999


Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +.+|...+..+++.+|++++|+|+++....... ..| ..+...  ++|+++++||+|+...
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~  140 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA  140 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence            999888888889999999999999987666554 344 334444  7999999999998754

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=2.8e-16  Score=124.19  Aligned_cols=165  Identities=21%  Similarity=0.192  Sum_probs=102.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC------CC------CC-----CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN------TF------PT-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~------~~------~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      .+.+++|+++|+.++|||||+++|.+.      ..      .+     ...+.+.+.  ....+......+.|+||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence            356899999999999999999999621      10      00     011112121  122233333567799999998


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .|.......+..+|++++|+|++++...++  .+.+..+...  ++|. ++++||+|+.+...       .......+..
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~  204 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELR  204 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHH
Confidence            876655555667999999999987643333  3444455555  7895 68899999975321       0001112333


Q ss_pred             HHHHHhCC----CeEEEeccC---CCCC-------HHHHHHHHHHHHcCC
Q 029215          145 ELRKLIGS----PAYIECSSK---TQQN-------VKAVFDAAIKVVLQP  180 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~~~  180 (197)
                      ++....+.    .|++++|+.   +|.|       +.++++.+.+.+..+
T Consensus       205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p  254 (447)
T PLN03127        205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP  254 (447)
T ss_pred             HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence            44443332    478888875   4544       778888888776533

>PLN03126 Elongation factor Tu; Provisional

Probab=99.71  E-value=2.1e-16  Score=125.50  Aligned_cols=149  Identities=19%  Similarity=0.162  Sum_probs=95.7

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC------CCCC-----------CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT------FPTD-----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~------~~~~-----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      ++..++|+++|+.++|||||+++|+...      ....           ....+.+.....+..++  ..+.++|+||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence            3468999999999999999999998521      1110           00111111111122233  567799999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +|.......+..+|++++|+|+.+....+.  .+++..+...  ++| +++++||+|+.+...       ......+++.
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~  224 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVR  224 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHH
Confidence            887766666778999999999987754443  3444455555  788 678899999965321       0011223555


Q ss_pred             HHHHHhC----CCeEEEeccCCCC
Q 029215          145 ELRKLIG----SPAYIECSSKTQQ  164 (197)
Q Consensus       145 ~~~~~~~----~~~~~~~Sa~~~~  164 (197)
                      .+.+..+    ..+++++|+.++.
T Consensus       225 ~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        225 ELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHHhcCCCcCcceEEEEEccccc
Confidence            5555543    2478999998874

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.71  E-value=2e-16  Score=125.03  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=99.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC--CCC------------------------CCCCce-eece---eEEEEECCe
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------------------------DYVPTV-FDNF---SANVVVDGS   52 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~------------------------~~~~t~-~~~~---~~~~~~~~~   52 (197)
                      ++++++|+++|+.++|||||+.+|+...  ...                        +..+.. ....   .........
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            4568999999999999999998887421  100                        000000 0000   111222334


Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~  125 (197)
                      ...++++|+||+++|.......+..+|++++|+|+++..-   +   ... ......+...  ++| +++++||+|+...
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~--gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTL--GVKQMICCCNKMDATTP  160 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence            4678899999999999888888999999999999987421   0   122 2222233333  675 6888999998621


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHH
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK  167 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (197)
                      ..   . ........++++.+.+..++    .+++++||.+|+|+.
T Consensus       161 ~~---~-~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        161 KY---S-KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             hh---h-HHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            10   0 00001134566777777663    379999999999985

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.71  E-value=1.8e-15  Score=111.37  Aligned_cols=153  Identities=21%  Similarity=0.227  Sum_probs=110.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-------ccCCCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~~~   77 (197)
                      --+++++|.|++|||||++.|++... ...|..|+.......+.+++  ..+|+.|+||.-.-.+.       .-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            46899999999999999999997653 56788888888888888888  67789999986433322       2345689


Q ss_pred             CcEEEEEEeCCCHhH-HHHHHHHH----------------------------------------HHHHhhhC--------
Q 029215           78 ADVFILAFSLISKAS-YENVAKKW----------------------------------------IPELRHYA--------  108 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~~--------  108 (197)
                      ||.+++|+|+..... .+.+..++                                        ...+.++.        
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986543 22111111                                        11111110        


Q ss_pred             -----------------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHH
Q 029215          109 -----------------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       109 -----------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  171 (197)
                                       .-+|.+.|.||+|+..               .++...+.+..   .++.+||+.+.|++++.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e  282 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELKE  282 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence                             1158899999999843               34445555444   678999999999999999


Q ss_pred             HHHHHHc
Q 029215          172 AAIKVVL  178 (197)
Q Consensus       172 ~i~~~~~  178 (197)
                      .|.+.+-
T Consensus       283 ~i~~~L~  289 (365)
T COG1163         283 RIWDVLG  289 (365)
T ss_pred             HHHHhhC
Confidence            9999873

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=1.9e-16  Score=126.09  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=93.5

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC--CCCCC----------CCce-------------------eecee-EEEEEC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV-------------------FDNFS-ANVVVD   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~----------~~t~-------------------~~~~~-~~~~~~   50 (197)
                      .+..++|+++|+.++|||||+++|+...  .....          .++.                   +.... ......
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            3567999999999999999999987432  11100          1110                   00001 111122


Q ss_pred             CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  130 (197)
                      .....+.|+||||++.|.......+..+|++++|+|+..+..-+.. ..+ ..+.... ..|+++++||+|+.....   
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~lg-~~~iIvvvNKiD~~~~~~---  177 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLLG-IKHLVVAVNKMDLVDYSE---  177 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHhC-CCceEEEEEeeccccchh---
Confidence            2335678999999988865555557889999999999876432222 111 1222221 247899999999964211   


Q ss_pred             CCCCCccccHHHHHHHHHHhC---CCeEEEeccCCCCCHHHH
Q 029215          131 DHPGAVPITTAQGEELRKLIG---SPAYIECSSKTQQNVKAV  169 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~  169 (197)
                         .......++...+....+   ..+++++||++|+|+.++
T Consensus       178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence               000011123333333433   247999999999998764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.71  E-value=2.9e-16  Score=116.29  Aligned_cols=162  Identities=19%  Similarity=0.180  Sum_probs=112.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----c---ccCCCCCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~~   79 (197)
                      -|.++|.|++|||||++.+..-+ -..+|+.|+....-..+.. ...-.+.+-|+||.-+-.+    +   .-.+++.+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            46799999999999999998754 3567888875554444444 2224677999999643322    2   123467789


Q ss_pred             EEEEEEeCCCHhH---HHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           80 VFILAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ++++|+|++..+-   .++. ..+...+..|.   .+.|.+||+||+|+....+          ......+.+.+..+..
T Consensus       240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~  308 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE  308 (369)
T ss_pred             eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence            9999999986542   3333 55566666665   4899999999999755432          2333344455555553


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ..+.+||.++.|++++...+.+.+...+
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            3434999999999999999998877664

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.70  E-value=8.5e-16  Score=116.24  Aligned_cols=80  Identities=25%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEE---------------------ECC-eEEEEEEEEcCCc-
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ-   64 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~i~D~~G~-   64 (197)
                      |+++|.|+||||||+++++..... .+++.++.........                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987642 3344443222111111                     122 3367999999997 


Q ss_pred             ---ccccccccC---CCCCCcEEEEEEeCC
Q 029215           65 ---EDYNRLRPL---SYRGADVFILAFSLI   88 (197)
Q Consensus        65 ---~~~~~~~~~---~~~~~~~~i~v~d~~   88 (197)
                         +++..+...   .+++||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               444444334   378999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.70  E-value=1e-16  Score=125.75  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC--CCCCC----------CCc----------------------eeeceeEEEEECCe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPT----------------------VFDNFSANVVVDGS   52 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~--~~~~~----------~~t----------------------~~~~~~~~~~~~~~   52 (197)
                      ++|+++|+.++|||||+.+|+...  .....          ..+                      +.+.....+..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence            589999999999999999986421  11100          000                      001111112223  


Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      ...+.|+||||++.|.......+..+|++++|+|+..+...+.. +.+ ..+... ...++++++||+|+.....     
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~-----  150 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDE-----  150 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchH-----
Confidence            35778999999998876555677899999999999876433332 222 222222 1235889999999864221     


Q ss_pred             CCCccccHHHHHHHHHHhCC--CeEEEeccCCCCCHHH
Q 029215          133 PGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA  168 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  168 (197)
                       .......++...+.+..+.  .+++++||++|+|+++
T Consensus       151 -~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       151 -EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             -HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             0000112333444454443  3699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=8.3e-16  Score=114.61  Aligned_cols=144  Identities=15%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CCCce-eeceeEEEEECCeEEEEEEEEcCCccccc-----
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYN-----   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----   68 (197)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..+|. .......+..++..+.+++|||||...+.     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876432          22333 22334455567778899999999943221     


Q ss_pred             ---------------------ccccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           69 ---------------------RLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        69 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                                           ......+.  .+|+++|+++.+... +......++..+..   .+|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK---RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence                                 11112333  478888888876521 11111233444442   6899999999999653


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      .+        .......+.+.+..+++ ++|.....
T Consensus       159 ~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~  185 (276)
T cd01850         159 EE--------LKEFKQRIMEDIEEHNI-KIYKFPED  185 (276)
T ss_pred             HH--------HHHHHHHHHHHHHHcCC-ceECCCCC
Confidence            21        01234556666777776 67765543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=8.7e-17  Score=115.95  Aligned_cols=174  Identities=16%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCC--CCceeeceeEEEEECCeEEEEEEEEcCCccc-------ccccccC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPL   73 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~   73 (197)
                      +..+++++++|..|+|||||+|+|+.+...+-.  ..+..........+++  -.+.+||+||..+       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            456899999999999999999999975542211  1111111111222344  3567999999654       5555667


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc---ccc--cCCCCCccccHHHHHHHHH
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK---QFF--IDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~--~~~~~~~~~~~~~~~~~~~  148 (197)
                      ++...|.++++.++.|+.---+. ..|...+..-. +.++++++|.+|.....   ...  ...+...+...+.+....+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            78889999999999998544443 44444443332 58999999999986542   000  1111112222223322222


Q ss_pred             Hh-CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          149 LI-GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       149 ~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .. ...|++.+|...++|++.+...+++.+...
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            21 245888889999999999999999988644

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=6.4e-16  Score=107.15  Aligned_cols=159  Identities=17%  Similarity=0.174  Sum_probs=104.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCc----------ccccccc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLR   71 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~   71 (197)
                      +....-|+++|-++||||||+|.|++..-......|.+ +.....+.+++.   +.+.|.||-          +.+..+.
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence            34567899999999999999999998653222223332 223334445553   669999992          2333333


Q ss_pred             cCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           72 PLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        72 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..|++   +..++++++|+-....-.+  .+.++.+...  ++|+++++||+|......           ........++
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~~--~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~  162 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLEL--GIPVIVVLTKADKLKKSE-----------RNKQLNKVAE  162 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEccccCChhH-----------HHHHHHHHHH
Confidence            34443   3678888999877655444  3666667666  999999999999976432           1112223332


Q ss_pred             Hh----CCCe-EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          149 LI----GSPA-YIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       149 ~~----~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ..    ...+ ++..|+..+.|++++...|.+.+..
T Consensus       163 ~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         163 ELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22    2211 6678999999999999998887643

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.70  E-value=2.9e-17  Score=113.66  Aligned_cols=117  Identities=18%  Similarity=0.158  Sum_probs=73.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEE-CCeEEEEEEEEcCCcccccccccC---CCCCCcEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVF   81 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~---~~~~~~~~   81 (197)
                      .-.|+++|++|+|||+|+.+|..+...+...+. .....  +.. ......+.++|+||+++.+.....   +...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            357999999999999999999998553332222 11111  111 122245679999999988763333   36789999


Q ss_pred             EEEEeCCC-HhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCC
Q 029215           82 ILAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~  125 (197)
                      |||+|.+. ...+.+..+.++..+....   ...|++|++||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 4556666566666665443   58999999999999765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.70  E-value=7.6e-16  Score=116.82  Aligned_cols=158  Identities=19%  Similarity=0.191  Sum_probs=110.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc---------ccccccC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~   73 (197)
                      .....|.++|..++|||||+|+|++.. +..+.-.++-+.....+.+.+ ...+.+-||.|.-+         |.+.. .
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence            356889999999999999999999654 334555555555555555553 14556899999432         22221 1


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      -...+|.++.|+|++++.....+ ......+.+.. .+.|+++|.||+|+..+.               .......... 
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-  330 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-  330 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-
Confidence            23579999999999999666665 66666666654 479999999999986532               1112222222 


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +..+.+||++|.|++.+++.|.+.+...
T Consensus       331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         331 PNPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            2578899999999999999999987643

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.69  E-value=3.4e-16  Score=123.82  Aligned_cols=159  Identities=16%  Similarity=0.108  Sum_probs=97.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC--CCCC------------------------CCCCce-eece---eEEEEECCe
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV-FDNF---SANVVVDGS   52 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~------------------------~~~~t~-~~~~---~~~~~~~~~   52 (197)
                      +++.++|+++|+.++|||||+.+|+..  ....                        +..+.. ....   .........
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            456899999999999999999988752  1110                        000000 0000   111222334


Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~  125 (197)
                      ...++|+|+||+.+|.......+..+|++++|+|++.+..   +   ... .+.+..+...  ++| +++++||+|....
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccc
Confidence            4678899999999998777777889999999999987531   0   112 2223334444  777 5689999995321


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (197)
                      ..   . ........+++..+....++    .+++++|+.+|+|+.+
T Consensus       161 ~~---~-~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NY---S-QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hh---h-HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            00   0 00001123344444444443    4789999999999863

>TIGR00503 prfC peptide chain release factor 3

Probab=99.69  E-value=1.3e-15  Score=122.44  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=78.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh-CCCCCCC-----C----Ccee----------ece-eEEEEECCeEEEEEEEEcC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS-NTFPTDY-----V----PTVF----------DNF-SANVVVDGSTVNLGLWDTA   62 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~-~~~~~~~-----~----~t~~----------~~~-~~~~~~~~~~~~l~i~D~~   62 (197)
                      .+..+|+|+|++++|||||+++|+. .......     .    .+..          ..+ .....+....+.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3567999999999999999999853 2111100     0    0110          111 1122334445788899999


Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      |+..|.......+..+|++++|+|+++.....  ...+.......  ++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR--TRKLMEVTRLR--DTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHhc--CCCEEEEEECccccC
Confidence            99888776666788999999999998752222  23444444444  899999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=7.6e-16  Score=114.86  Aligned_cols=147  Identities=22%  Similarity=0.228  Sum_probs=91.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCC-----CCce--------------eeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----VPTV--------------FDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----~~t~--------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      +|+++|++|+|||||+++++...-....     .+++              .......+..++  +.+++|||||+..|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999998753211000     0010              000111233344  678899999998887


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..+...+..+|++++|+|+++....... ..| ..+...  ++|.++++||+|.....            ..+....+.+
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~~~------------~~~~~~~l~~  142 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRERAD------------FDKTLAALQE  142 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCCCC------------HHHHHHHHHH
Confidence            7777788899999999999987554433 333 334444  78999999999986532            2233344545


Q ss_pred             HhCCCeEEE--eccCCCCCHHHHHHHH
Q 029215          149 LIGSPAYIE--CSSKTQQNVKAVFDAA  173 (197)
Q Consensus       149 ~~~~~~~~~--~Sa~~~~~i~~~~~~i  173 (197)
                      .++. ++++  +...++.++..+.+.+
T Consensus       143 ~~~~-~~~~~~ip~~~~~~~~~~vd~~  168 (268)
T cd04170         143 AFGR-PVVPLQLPIGEGDDFKGVVDLL  168 (268)
T ss_pred             HhCC-CeEEEEecccCCCceeEEEEcc
Confidence            5554 3433  3445555544443333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1.7e-15  Score=116.53  Aligned_cols=164  Identities=20%  Similarity=0.223  Sum_probs=118.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC--CCCC--------------CCCC-ce-eeceeEEEEE-CCeEEEEEEEEcCC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------DYVP-TV-FDNFSANVVV-DGSTVNLGLWDTAG   63 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~--------------~~~~-t~-~~~~~~~~~~-~~~~~~l~i~D~~G   63 (197)
                      .++.-++.++-+-.-|||||..|++..  .+..              ...+ |+ .......+.. ++..|.++++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            345667889999999999999998742  1211              1111 11 2222333443 56889999999999


Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      |-+|.....+.+..|.++++|+|++.+-.-+.+...| ..+..   +.-++-|+||+||+...            ...-.
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y-lAle~---~LeIiPViNKIDLP~Ad------------pervk  149 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALEN---NLEIIPVLNKIDLPAAD------------PERVK  149 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH-HHHHc---CcEEEEeeecccCCCCC------------HHHHH
Confidence            9999998888999999999999999986666663333 23322   67899999999998753            22333


Q ss_pred             HHHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215          144 EELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       144 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      ++.....|..  ..+.+|||+|.|++++++.|++.+..+..
T Consensus       150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             HHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence            4444555553  46789999999999999999999988763

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.4e-16  Score=105.98  Aligned_cols=156  Identities=17%  Similarity=0.253  Sum_probs=113.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.=|++++|-.++|||||++.|..++. ..+.||.-. .+....+.+  ++++.+|.+|+..-+..|..++..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHP-TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHP-TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCC-ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            456899999999999999999988765 334444311 123344666  7788999999998888999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH---HHh---C------
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR---KLI---G------  151 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~------  151 (197)
                      +|+-|.+.|.+.+..+-..+.... .+.|+++.+||+|.....            ++++.+-..   +.-   +      
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~~  162 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLTD  162 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhcccccccccC
Confidence            999999999988676655554443 589999999999998752            222222111   111   1      


Q ss_pred             --C--CeEEEeccCCCCCHHHHHHHHHHH
Q 029215          152 --S--PAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       152 --~--~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                        .  ...+.||...+.|..+.|.|+.+.
T Consensus       163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCCeEEEEEEEEEccCccceeeeehhhh
Confidence              1  134668888888877878777654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.66  E-value=9.8e-16  Score=126.48  Aligned_cols=154  Identities=19%  Similarity=0.130  Sum_probs=93.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC--CCCC----------CCCceee----------------------ceeEEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFD----------------------NFSANVVV   49 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------~~~t~~~----------------------~~~~~~~~   49 (197)
                      +..++|+++|++++|||||+++|+...  ....          ..+++.+                      .....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            457999999999999999999988532  1110          1111000                      00111222


Q ss_pred             CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  129 (197)
                      ++  ..+.|+||||++.|.......+..+|++++|+|++.+...+..  .....+... ...|+++++||+|+.+...  
T Consensus       102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~--  174 (632)
T PRK05506        102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQ--  174 (632)
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchh--
Confidence            33  4667999999988765555567889999999999876433222  112222222 1357889999999964211  


Q ss_pred             cCCCCCccccHHHHHHHHHHhCC--CeEEEeccCCCCCHHH
Q 029215          130 IDHPGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA  168 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  168 (197)
                          ........+...+....+.  .+++++||++|.|+.+
T Consensus       175 ----~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 ----EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                0000112233344455554  3689999999999874

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.66  E-value=1.3e-15  Score=120.28  Aligned_cols=167  Identities=14%  Similarity=0.124  Sum_probs=103.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCC---CCCC-CC-ceeeceeEE-------------E-EEC------------C
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDY-VP-TVFDNFSAN-------------V-VVD------------G   51 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~-~~-t~~~~~~~~-------------~-~~~------------~   51 (197)
                      ....++|.++|+...|||||+..|++..-   .++. .+ |+..-+...             + ...            +
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            45679999999999999999999985321   1110 00 100000000             0 000            0


Q ss_pred             ----eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215           52 ----STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        52 ----~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  126 (197)
                          ....+.|+|+||++.|-......+..+|++++|+|+.++ ...+.. +. +..+... .-.|+++|+||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-eh-l~i~~~l-gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EH-LAAVEIM-KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HH-HHHHHHc-CCCcEEEEEecccccCHH
Confidence                023678999999998877666667889999999999874 222222 22 2222222 123688999999997532


Q ss_pred             ccccCCCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          127 QFFIDHPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .        .....++++.+....  ...+++++||++|.|++.+++.|.+.+..+
T Consensus       188 ~--------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        188 Q--------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             H--------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            1        001122333333221  234899999999999999999999866544

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.65  E-value=2e-15  Score=98.61  Aligned_cols=105  Identities=23%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---------cccCCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR   76 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~~~   76 (197)
                      +|+|+|.+|+|||||+|.|++...  .....+++.......+..++..+  .++||||......         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999997533  23334444333334555677544  5999999643211         1122347


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK  119 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (197)
                      .+|++++|+|++++.. +.. ..++..++   .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            8999999999887422 122 34444553   38999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK09866 hypothetical protein; Provisional

Probab=99.65  E-value=5.2e-15  Score=118.57  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=75.7

Q ss_pred             EEEEEEEcCCcccc-----cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215           54 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        54 ~~l~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  128 (197)
                      ..+.|.||||...-     .......+..+|+++||+|++...+..+.  .+...+.....+.|+++|+||+|+..... 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree-  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS-  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence            45679999997532     11233468899999999999876444443  44555655522369999999999854221 


Q ss_pred             ccCCCCCccccHHHHHHHHHHh------CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          129 FIDHPGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                               ...+....+....      ....+|++||+.|.|++.+++.|.+.
T Consensus       307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                     2244444443211      23468999999999999999999884

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=5.8e-15  Score=122.92  Aligned_cols=116  Identities=18%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC--C------CC-----------CCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--F------PT-----------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      .+..+|+|+|+.++|||||+++|+...  .      .+           ...+.+.......+..++  ..++++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            456799999999999999999997421  1      00           011111112222344445  56789999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ..|...+...++.+|++++|+|+.++...++.  ..+..+...  ++|+++++||+|+...
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            88877777788899999999999887544433  344445544  7999999999998753

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=4.5e-15  Score=123.62  Aligned_cols=115  Identities=19%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CC-----CC------------CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP-----TD------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~-----~~------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +.-+|+|+|++++|||||+++|....  ..     ..            ..+++.......+..++  +.+++|||||+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~   86 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV   86 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence            45699999999999999999997421  10     00            01111122223344444  678899999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +|...+...++.+|++++|+|+.+....+..  .+...+...  ++|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            8887777888999999999999987555443  333344444  7999999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.63  E-value=1e-15  Score=118.24  Aligned_cols=172  Identities=16%  Similarity=0.046  Sum_probs=123.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC---------C
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------S   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~---------~   74 (197)
                      +.-.++|+|.|+||||||++.++.... ..+|..|+...+..++.+..  ..++++||||.-+....-..         .
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            456899999999999999999887654 46677777777766666555  67889999995332111001         1


Q ss_pred             CCCCcEEEEEEeCCC--HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH--HHHHHHHh
Q 029215           75 YRGADVFILAFSLIS--KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ--GEELRKLI  150 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  150 (197)
                      .+--.+|+|+.|++.  +-|..+. -.++..+...+.+.|+|+|+||+|+.....          ++++.  ..+....-
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~  313 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD  313 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence            122356899999976  3566666 567778888888999999999999987654          44433  22333333


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHHHHHcCCchhhhhhhc
Q 029215          151 GSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKKK  189 (197)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~  189 (197)
                      +..+++++|+.+..|+-++.....+.++..+-+.+.+.+
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~  352 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSE  352 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence            434899999999999999999999998887766654443

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=6.2e-15  Score=115.11  Aligned_cols=154  Identities=19%  Similarity=0.260  Sum_probs=109.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeE-EEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.=|-|+|+..-|||||+..|-.........+.+...+.. .+.. +|  -.+.|.|||||..|..+..+...-.|+++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            45668899999999999999998766544444443333321 2222 44  56779999999999999988888899999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-H-------HHHhCCCe
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-L-------RKLIGSPA  154 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~  154 (197)
                      +|+.+.|+--.+..  +-++....  .+.|+++++||+|..+..             .+...+ +       ...-|...
T Consensus       230 LVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdVQ  292 (683)
T KOG1145|consen  230 LVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDVQ  292 (683)
T ss_pred             EEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCcee
Confidence            99999987444433  12222222  399999999999987542             222222 2       12224457


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ++++||++|+|++.+.+.+.-.+
T Consensus       293 vipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  293 VIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             EEEeecccCCChHHHHHHHHHHH
Confidence            89999999999999999887765

>PRK00007 elongation factor G; Reviewed

Probab=99.61  E-value=2.7e-14  Score=118.99  Aligned_cols=115  Identities=16%  Similarity=0.116  Sum_probs=80.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh--CCC------CC-----------CCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTF------PT-----------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~--~~~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ++..+|+|+|.+++|||||+++|+.  +..      .+           ...+.+.+.....+.+.+  ..++++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            3567999999999999999999973  211      00           011122222223344455  57789999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      ..|.......++.+|++++|+|+......++.  ..+..+...  ++|.++++||+|+..
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~  141 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            88766666677889999999999877555443  334445555  789999999999874

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.61  E-value=1.3e-13  Score=98.31  Aligned_cols=163  Identities=18%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCC---CCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------cc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~~   72 (197)
                      ++|+++|.+|+|||||+|.+++.......   .+.+...........+  ..+.++||||.......           ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            48999999999999999999986542211   1222222233344555  45679999996544210           11


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .....+|++++|+++.+ .+-.+  ...++.+.+.+.   -.+++++.|+.|........    ..........+.+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~----~~~~~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLE----DYLENSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHH----HHHHhccHHHHHHHHH
Confidence            22467899999999876 22222  344444444431   35889999999976532100    0000012345556666


Q ss_pred             hCCCeEEEec-----cCCCCCHHHHHHHHHHHHcC
Q 029215          150 IGSPAYIECS-----SKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       150 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~  179 (197)
                      .+. .++..+     +..+.+++++++.+.+.+..
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            554 444443     45678899999998888765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=6.1e-15  Score=113.85  Aligned_cols=166  Identities=22%  Similarity=0.216  Sum_probs=110.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-c--------ccC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L--------RPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~--------~~~   73 (197)
                      ..++|+++|.|++|||||+|.|....  +..+.++|+.+.....++++|  +.+.+.||+|..+... .        ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            45899999999999999999999865  467788899999999999999  5666999999765211 1        123


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHH-HHHHHHHhhhC-------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215           74 SYRGADVFILAFSLISKASYENVA-KKWIPELRHYA-------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE  145 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      .+..+|++++|+|+.....-.+.. ...+.....-.       ...|++++.||.|+...-.-    ...-.+.+...  
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~--  418 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE----MTKIPVVYPSA--  418 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc----ccCCceecccc--
Confidence            456899999999994433222221 22322222221       24799999999999765210    00000000110  


Q ss_pred             HHHHh-CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          146 LRKLI-GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       146 ~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                        ... ....+.++|+++++|++.+.+.+.+.+...
T Consensus       419 --~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  419 --EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             --ccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence              111 222455699999999999999998876543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.59  E-value=1.7e-14  Score=122.72  Aligned_cols=158  Identities=19%  Similarity=0.229  Sum_probs=95.2

Q ss_pred             CcHHHHHHHHhhCCCCCCCCCceeeceeE-EEEECC------e----------EEEEEEEEcCCcccccccccCCCCCCc
Q 029215           17 VGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDG------S----------TVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus        17 ~GKstli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~------~----------~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      ++||||+..+.+........+.+...+.. .+..+.      .          .-.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            45999999999877655444444333221 111111      0          012789999999999888777788899


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccc------cHHHH--------HH
Q 029215           80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI------TTAQG--------EE  145 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~--------~~  145 (197)
                      ++++|+|++++-..+..  ..+..+...  ++|+++|+||+|+.+........+....+      ...+.        .+
T Consensus       552 ivlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~  627 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK  627 (1049)
T ss_pred             EEEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            99999999874222221  222333333  78999999999997532210000000000      00000        00


Q ss_pred             HH-------------HHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          146 LR-------------KLIGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       146 ~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++             ...+..+++++||++|+|+++++.++.....
T Consensus       628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence            11             1123458899999999999999998865443

>cd00066 G-alpha G protein alpha subunit

Probab=99.59  E-value=2.6e-14  Score=108.75  Aligned_cols=128  Identities=17%  Similarity=0.188  Sum_probs=88.3

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  121 (197)
                      .+.+.+||++|+...+..|.+++.++++++||+|.++.          ..+.+....+...+.... .++|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46788999999999999999999999999999999874          456666455555555433 6899999999999


Q ss_pred             ccCCcccc-------cCCCCCccccHHHHHHHHHH-----h---CC-CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          122 LRDDKQFF-------IDHPGAVPITTAQGEELRKL-----I---GS-PAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       122 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~---~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +..+....       ++-... ..+.+.+..+...     .   +. .-.+.++|.+..++..+|+.+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~-~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGP-PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            76543211       111110 1234444443332     1   11 12345899999999999999998876543

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK12740 elongation factor G; Reviewed

Probab=99.59  E-value=3.2e-14  Score=118.47  Aligned_cols=108  Identities=21%  Similarity=0.275  Sum_probs=73.3

Q ss_pred             ECCCCCcHHHHHHHHhhCCC--CC--CC-CC-ce-------------eeceeEEEEECCeEEEEEEEEcCCccccccccc
Q 029215           12 VGDGAVGKTCMLISYTSNTF--PT--DY-VP-TV-------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus        12 ~G~~~~GKstli~~l~~~~~--~~--~~-~~-t~-------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~   72 (197)
                      +|+.++|||||+++|....-  ..  .. .. +.             .......+...+  +.+++|||||+..|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            69999999999999964211  00  00 00 11             011112333444  7788999999988877777


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ..+..+|++++|+|+++....... ..| ..+...  +.|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCCC
Confidence            788899999999999987655543 333 334444  7899999999998743

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.58  E-value=8.4e-14  Score=108.44  Aligned_cols=82  Identities=24%  Similarity=0.223  Sum_probs=55.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEE---------------------EC-CeEEEEEEEEcCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VD-GSTVNLGLWDTAG   63 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~l~i~D~~G   63 (197)
                      ++|+++|.|++|||||+++|+..... .+++.++.........                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987653 3454444222221111                     11 1236789999999


Q ss_pred             cc----cccccccCC---CCCCcEEEEEEeCC
Q 029215           64 QE----DYNRLRPLS---YRGADVFILAFSLI   88 (197)
Q Consensus        64 ~~----~~~~~~~~~---~~~~~~~i~v~d~~   88 (197)
                      ..    ....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    233333334   77899999999997

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=2.5e-14  Score=108.70  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=97.0

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhC--CCCC--------------C----------------CCCceeeceeEEEEE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------D----------------YVPTVFDNFSANVVV   49 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~--------------~----------------~~~t~~~~~~~~~~~   49 (197)
                      +.+.+++++++|+..+|||||+-+|+..  .+..              .                +.+.+.+  ......
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~--~~~~~f   80 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTID--VAHSKF   80 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEE--EEEEEe
Confidence            4577899999999999999999887732  2211              0                0000000  111122


Q ss_pred             CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      ....+.+.|.|+||+.+|-..+.....+||+.|+|+|+.+.+.-..     ...+-+ .+....--..+++++||+|+.+
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~  159 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVS  159 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccc
Confidence            2334678899999999888877788889999999999988742111     101111 1111111235688889999976


Q ss_pred             CcccccCCCCCccccHHHHHHHHHHhCCC----eEEEeccCCCCCHHH
Q 029215          125 DKQFFIDHPGAVPITTAQGEELRKLIGSP----AYIECSSKTQQNVKA  168 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~~i~~  168 (197)
                      -.+     . .......+...+.+..|+.    +|+++|+..|+|+.+
T Consensus       160 wde-----~-rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 WDE-----E-RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCH-----H-HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            221     0 0111222334455555543    589999999998754

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.57  E-value=5.2e-14  Score=103.77  Aligned_cols=172  Identities=16%  Similarity=0.174  Sum_probs=117.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCC----CcEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----ADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~----~~~~i   82 (197)
                      -+|+|+|..++|||||+.+|.+..-...-..-...+...+-...+...++.+|-+.|......+....+..    -..||
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi  132 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI  132 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence            57999999999999999999876522221111122222233334455788899999987666665554432    35788


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCC-----------------------------------------------------
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAP-----------------------------------------------------  109 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------------------------------------------------  109 (197)
                      ++.|+++++.+-+.++.|...+.++..                                                     
T Consensus       133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL  212 (473)
T KOG3905|consen  133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL  212 (473)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence            999999997765555777666554421                                                     


Q ss_pred             ---------CCCEEEEeecCCccCCcccc-cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          110 ---------GVPIILVGTKLDLRDDKQFF-IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       110 ---------~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                               ++|+++|++|||...-.... ...++........++.|+..+|. ..+.+|++...|++-++.+|.+..+-
T Consensus       213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence                     15999999999984322111 01122222345577889999998 89999999999999999999998753

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.57  E-value=6e-15  Score=93.84  Aligned_cols=137  Identities=23%  Similarity=0.171  Sum_probs=96.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc----ccCCCCCCcEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----RPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~----~~~~~~~~~~~i~   83 (197)
                      |++++|..|+|||||.+.+.++....  ..|.      .+++++.    -.+||||.......    ......++|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ------Ave~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ------AVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh--cccc------eeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            79999999999999999998764321  1111      1222221    15899995322222    2334568999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |-.++++++.-..  -+.    ... ..|+|-|++|.|+.++            -+.+..+++..+-|..++|++|+.++
T Consensus        71 v~~and~~s~f~p--~f~----~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          71 VHAANDPESRFPP--GFL----DIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             eecccCccccCCc--ccc----ccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence            9999998653221  111    111 5669999999999864            34667788888999989999999999


Q ss_pred             CCHHHHHHHHHH
Q 029215          164 QNVKAVFDAAIK  175 (197)
Q Consensus       164 ~~i~~~~~~i~~  175 (197)
                      .|++++++.+..
T Consensus       132 ~gv~~l~~~L~~  143 (148)
T COG4917         132 QGVEELVDYLAS  143 (148)
T ss_pred             ccHHHHHHHHHh
Confidence            999999998764

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.55  E-value=7.9e-14  Score=100.62  Aligned_cols=124  Identities=19%  Similarity=0.122  Sum_probs=71.6

Q ss_pred             EEEEEEEEcCCccc-ccccccCCC-------CCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215           53 TVNLGLWDTAGQED-YNRLRPLSY-------RGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~l~i~D~~G~~~-~~~~~~~~~-------~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (197)
                      .+...++|||||-+ |.+.....+       ....++++++|...   +.+|-..--.--..+.+.  ..|.+++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence            46677999999853 433222221       34678888998744   444443311112333333  899999999999


Q ss_pred             ccCCcccc-------------c--CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          122 LRDDKQFF-------------I--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       122 ~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +....-..             .  ...-...+...-...+..-+.....+-+|+.+|.|++++|..+-+.+.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            97753210             0  000011111111112222233346688999999999999999887764

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=3.1e-14  Score=98.97  Aligned_cols=167  Identities=16%  Similarity=0.134  Sum_probs=103.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCC---CCcEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVF   81 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~~~~~   81 (197)
                      +.-.|+++|+.+||||+|+-+|..+.+.+...+.  ......+...+..  +.++|.||+++.+.-...++.   .+-++
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            3457999999999999999999887543332221  1222333344433  569999999987654333333   78999


Q ss_pred             EEEEeCCC-HhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCccccc------------------------CCC
Q 029215           82 ILAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFI------------------------DHP  133 (197)
Q Consensus        82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~------------------------~~~  133 (197)
                      +||+|..- .....+..+.++..+....   ...|++|++||.|+.-......                        +..
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99998743 3445555456666665552   5889999999999975533210                        000


Q ss_pred             CCccccHHHHHH--HHHHh-CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          134 GAVPITTAQGEE--LRKLI-GSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       134 ~~~~~~~~~~~~--~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ......-.++..  |+..- ....+.++|++.+ +++++-+|+.+.
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            000011111111  22211 1225778999998 899999998765

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.54  E-value=4.2e-13  Score=105.69  Aligned_cols=164  Identities=24%  Similarity=0.340  Sum_probs=119.5

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .++.+.+.|+|+.++|||.|++.+.++.+.+.+.++....+ ...+...+....+.+.|.+-. ....+...- ..||++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            45789999999999999999999999988776656654443 334445577777778887765 222222222 679999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      .++||.+++.+|......+......  ...|+++|++|+|+.+..+       ...+..   .+++++++..+.+..|.+
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q-------~~~iqp---de~~~~~~i~~P~~~S~~  567 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQ-------RYSIQP---DEFCRQLGLPPPIHISSK  567 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhh-------ccCCCh---HHHHHhcCCCCCeeeccC
Confidence            9999999999998873333222222  4899999999999987643       111222   688899999888889998


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +.-. .++|..|...+..+.
T Consensus       568 ~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  568 TLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCCC-chHHHHHHHhhhCCC
Confidence            6333 899999999887665

>smart00275 G_alpha G protein alpha subunit

Probab=99.52  E-value=1.5e-13  Score=105.40  Aligned_cols=126  Identities=18%  Similarity=0.195  Sum_probs=86.7

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~  122 (197)
                      +.+.+||++|+...+..|.++++++++++||+|.++-          ..+.+....|...+.... .++|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5678999999999999999999999999999999973          356666455555554433 68999999999998


Q ss_pred             cCCcccc-------cCCCCCccccHHHHHHHHHH-----hC----C-CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          123 RDDKQFF-------IDHPGAVPITTAQGEELRKL-----IG----S-PAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       123 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~----~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .......       ++...  ..+.+.+..+...     ..    . .-++.++|.+..++..+|+.+.+.+.++.
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g--~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKG--PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCC--CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            6542211       11111  1233444433322     11    1 12345889999999999999888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK13768 GTPase; Provisional

Probab=99.51  E-value=1e-13  Score=102.27  Aligned_cols=124  Identities=17%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             EEEEEEcCCcccc---cccccCCC---CC--CcEEEEEEeCCCHhHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           55 NLGLWDTAGQEDY---NRLRPLSY---RG--ADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        55 ~l~i~D~~G~~~~---~~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+.+||+||+.+.   +..+..++   ..  ++++++++|+.......+.. ..|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5679999998653   23332222   22  89999999996654333321 2233222222238999999999999765


Q ss_pred             cccccCCCCCc----------------cccHHHHHHHHHHhC-CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          126 KQFFIDHPGAV----------------PITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       126 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ...........                .....+..+..+..+ ..+++++|++++.|++++.++|.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            32100000000                000001111223334 237899999999999999999988774

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=9.5e-14  Score=116.10  Aligned_cols=116  Identities=17%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC---------------CCCC---CCCceeec-eeEEEEECCeEEEEEEEEcCCcc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT---------------FPTD---YVPTVFDN-FSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~---~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +..+|+++|+.++|||||+++|+...               +...   ...|.... ........+..+.+++|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            45799999999999999999997521               1000   11121111 11222345566889999999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      +|.......++.+|++++|+|+.+....+.. ..| ..+...  +.|.++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~-~~~~~~--~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVL-RQALKE--NVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHH-HHHHHc--CCCEEEEEEChhccc
Confidence            9887777788999999999999875433332 222 223233  678899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.48  E-value=1.4e-12  Score=92.90  Aligned_cols=104  Identities=20%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      ....++++.|........+.   -++.++.|+|+.+.++...   .....+     ...=++++||+|+.+...      
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~~~------  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPMVG------  154 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccccc------
Confidence            45557788884322222211   2578999999987765321   111111     122389999999975311      


Q ss_pred             CCccccHHHHHHHHHH-hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          134 GAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                          ...+...+..+. ....+++++||++|.|++++|+++.+.+.
T Consensus       155 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ----ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ----ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                123333333333 34458999999999999999999997654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.48  E-value=6.4e-13  Score=99.06  Aligned_cols=157  Identities=19%  Similarity=0.187  Sum_probs=100.2

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCC---CC-------CC--CCceeec-----------------eeEEEE---E
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF---PT-------DY--VPTVFDN-----------------FSANVV---V   49 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~-------~~--~~t~~~~-----------------~~~~~~---~   49 (197)
                      ..+..+|++.+|+..-||||||-||+...-   .+       ..  ..+.+..                 ++..+.   +
T Consensus         2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF   81 (431)
T COG2895           2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF   81 (431)
T ss_pred             CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence            456679999999999999999999885421   00       00  0111100                 011111   1


Q ss_pred             CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  129 (197)
                      .-..-.+.+-|||||+.|...+-.-...||++|+++|+-.+-.-+.-+..++..+..   =..++++.||+||.+..+  
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG---IrhvvvAVNKmDLvdy~e--  156 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG---IRHVVVAVNKMDLVDYSE--  156 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC---CcEEEEEEeeecccccCH--
Confidence            112235679999999999988877888899999999996543333333444333331   245678889999987532  


Q ss_pred             cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCCHH
Q 029215          130 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVK  167 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~  167 (197)
                          +.......+...|+.+++..  .++++||..|+|+-
T Consensus       157 ----~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 ----EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                01112334566788887753  57899999999864

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.48  E-value=3.7e-13  Score=98.81  Aligned_cols=96  Identities=23%  Similarity=0.282  Sum_probs=76.8

Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG  143 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      +++..+.+.+++++|.+++|+|++++. ++..+ ..|+..+...  ++|+++|+||+|+.+...          +..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~~--~i~~vIV~NK~DL~~~~~----------~~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEAQ--NIEPIIVLNKIDLLDDED----------MEKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEECcccCCCHH----------HHHHHH
Confidence            577888888999999999999999887 78777 8888766554  899999999999965432          333344


Q ss_pred             HHHHHHhCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215          144 EELRKLIGSPAYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      ..+ +..+. +++++||++|.|++++|+.+.+
T Consensus        91 ~~~-~~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIY-RNIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHH-HHCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            444 34676 8999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.47  E-value=1.7e-14  Score=105.21  Aligned_cols=123  Identities=20%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             EEEEEEcCCcccccccccCC------C--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCC
Q 029215           55 NLGLWDTAGQEDYNRLRPLS------Y--RGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~  125 (197)
                      .+.++|||||.++...|...      +  ...-++++++|+.-..+.......++..+.... -+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            56799999998765433222      1  345688889998544332222122222222211 28999999999999762


Q ss_pred             cccc---c-CCCCC--------ccccHHHHHHHHHHhCCC-eEEEeccCCCCCHHHHHHHHHHHH
Q 029215          126 KQFF---I-DHPGA--------VPITTAQGEELRKLIGSP-AYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       126 ~~~~---~-~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ....   . .....        .....+...++...++.. .++++|+++++|+++++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            2000   0 00000        000111222222334555 789999999999999999987764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.9e-13  Score=108.38  Aligned_cols=176  Identities=17%  Similarity=0.192  Sum_probs=112.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEE-------------CC----eEEEEEEEEcCCcccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------------DG----STVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~-------------~~----~~~~l~i~D~~G~~~~   67 (197)
                      +..-++|+|+..+|||-|+..+.+..+.....+.+...+...+..             ++    ..--+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            345689999999999999999987655443333332222111110             00    1113568999999999


Q ss_pred             cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC-------CCccc--
Q 029215           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP-------GAVPI--  138 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-------~~~~~--  138 (197)
                      ..+..+....||++|+|+|+..+-..+.+  .-+.+++..  ++|+||++||+|........+..+       +...+  
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            99999999999999999999776333333  223445444  899999999999865543221000       00000  


Q ss_pred             -----cHHHHHHHHHH-h------------CCCeEEEeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          139 -----TTAQGEELRKL-I------------GSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       139 -----~~~~~~~~~~~-~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                           ....+.+|+.+ +            ....++++||..|+||.+++-+|++.......++
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                 00112223222 0            1235678999999999999999999877655443

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.45  E-value=1.8e-12  Score=96.83  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-------ccCCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSY   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~   75 (197)
                      ..++|+++|.+|+||||++|++++....  ....++...........++  ..++++||||..+....       ...++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            5789999999999999999999986532  2222222111112223445  67889999997654211       11111


Q ss_pred             --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCC
Q 029215           76 --RGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~  125 (197)
                        ...|+++||..++.. .+......++..+...+   --.+++++.|+.|..+.
T Consensus       115 ~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence              258999999655432 12212123444444443   13578999999997743

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.45  E-value=2.2e-12  Score=99.42  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=111.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCce-------------eeceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV-------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~-------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (197)
                      .-+|+++-+..-|||||+..|+..  .|.+...-..             .+...+...+....+.++|.|||||-+|-..
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            458999999999999999999853  2322111000             1111222233344488999999999999999


Q ss_pred             ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-
Q 029215           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-  149 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (197)
                      ..+.+.-+|++++++|+.++.-.+.-  ..+...-+.  +.+-|+|+||+|....+.         ..-.++...+... 
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQTr--FVlkKAl~~--gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L  151 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQTR--FVLKKALAL--GLKPIVVINKIDRPDARP---------DEVVDEVFDLFVEL  151 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCchh--hhHHHHHHc--CCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHh
Confidence            99999999999999999987544432  333333333  778899999999977543         0122333333333 


Q ss_pred             ------hCCCeEEEeccCCCC----------CHHHHHHHHHHHHcCCc
Q 029215          150 ------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       150 ------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  181 (197)
                            +.+ |++..|+.+|.          ++..+|+.|++.+..+.
T Consensus       152 ~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         152 GATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence                  344 88889998753          68999999999988775

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.45  E-value=2.1e-12  Score=94.86  Aligned_cols=120  Identities=15%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---c-------c
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~-------~   71 (197)
                      ...++|+|+|.+|+|||||+|.+++....  ....+++..........++  ..+++|||||......   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            35799999999999999999999986542  2233333222223333455  5678999999765421   0       1


Q ss_pred             cCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccCCc
Q 029215           72 PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK  126 (197)
Q Consensus        72 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~  126 (197)
                      ..++.  ..|++++|..++.. .+......+++.+...+.   -.++++|.|++|.....
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            11222  47888888766542 121221244444544331   25799999999997544

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.42  E-value=6e-12  Score=99.58  Aligned_cols=172  Identities=17%  Similarity=0.245  Sum_probs=110.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEE--CCeEEEEEEEEcCCcccccccccCCCCC----C
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRG----A   78 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~--~~~~~~l~i~D~~G~~~~~~~~~~~~~~----~   78 (197)
                      .-.|+|+|..++|||||+.+|.+..   ...++....|... +.-  .+...++.+|-+.|...+..+....+..    -
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            3589999999999999999987543   2233333333221 111  2234578899998876666665444432    3


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHhhh-------------------------C-------------------------
Q 029215           79 DVFILAFSLISKASYENVAKKWIPELRHY-------------------------A-------------------------  108 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------~-------------------------  108 (197)
                      -.+++|+|.+.++.+-+-+..|+..++.+                         .                         
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            57888999999876643334443322211                         0                         


Q ss_pred             ---C----------CCCEEEEeecCCccCCccccc-CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHH
Q 029215          109 ---P----------GVPIILVGTKLDLRDDKQFFI-DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       109 ---~----------~~p~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  174 (197)
                         |          ++|++||++|+|....-.... -.+.........++.++-.+|. .++.+|++...+++-++.+|.
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHH
Confidence               0          269999999999865321100 0011111233456778888998 899999999999999999999


Q ss_pred             HHHcCCc
Q 029215          175 KVVLQPP  181 (197)
Q Consensus       175 ~~~~~~~  181 (197)
                      +.+....
T Consensus       261 h~l~~~~  267 (472)
T PF05783_consen  261 HRLYGFP  267 (472)
T ss_pred             HHhccCC
Confidence            9887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd01882 BMS1 Bms1

Probab=99.42  E-value=3.6e-12  Score=92.62  Aligned_cols=142  Identities=19%  Similarity=0.160  Sum_probs=82.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .....|+++|.+|+|||||++.+....-........+. +  .+ .......+.++||||..  ..+ ....+.+|++++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll  109 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL  109 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence            34678999999999999999998764211110000011 1  11 11223567799999864  111 123567999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHHH-HHH-HhCCCeEEEecc
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-LRK-LIGSPAYIECSS  160 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Sa  160 (197)
                      ++|++.......  ..++..+...  +.|.+ +|+||.|+.+...       .......+++. +.. .....+++.+||
T Consensus       110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ki~~iSa  178 (225)
T cd01882         110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNK-------TLRKTKKRLKHRFWTEVYQGAKLFYLSG  178 (225)
T ss_pred             EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHH-------HHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence            999986544333  2444555544  67854 5999999864321       00001122222 322 234458999999


Q ss_pred             CCC
Q 029215          161 KTQ  163 (197)
Q Consensus       161 ~~~  163 (197)
                      ++.
T Consensus       179 ~~~  181 (225)
T cd01882         179 IVH  181 (225)
T ss_pred             ccC
Confidence            986

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.41  E-value=1.4e-11  Score=95.35  Aligned_cols=84  Identities=20%  Similarity=0.164  Sum_probs=57.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCccccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~   68 (197)
                      ..++|+++|.|+||||||+|+|++... ..+++.++.......+.+.+.               ...+.++|+||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            468999999999999999999987543 445666664444444443322               2347899999965322


Q ss_pred             c----cc---cCCCCCCcEEEEEEeCC
Q 029215           69 R----LR---PLSYRGADVFILAFSLI   88 (197)
Q Consensus        69 ~----~~---~~~~~~~~~~i~v~d~~   88 (197)
                      +    +.   -..++++|++++|+|+.
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    11   12357899999999974

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.40  E-value=3e-12  Score=97.22  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      .+.+.|+||+|.......   ....+|.++++.+...++..+.....   .+     ...-++|+||+|+.....     
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~-----  211 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTA-----  211 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhH-----
Confidence            367889999997532221   35579999999875555555544211   11     223489999999865321     


Q ss_pred             CCCccccHHHHHHHHHHh------CCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          133 PGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                         ......+........      ...|++.+||+++.|++++++.+.+.+.
T Consensus       212 ---a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        212 ---ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             ---HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence               001112222222211      1258999999999999999999999754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.40  E-value=9.4e-12  Score=95.54  Aligned_cols=156  Identities=16%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC----CC-------------CCCCCC----ceeecee--EEEE---ECCeEEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN----TF-------------PTDYVP----TVFDNFS--ANVV---VDGSTVNLGLW   59 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~----~~-------------~~~~~~----t~~~~~~--~~~~---~~~~~~~l~i~   59 (197)
                      .+.|.|+|+.++|||||+++|++.    ..             +....+    |+...+.  ..+.   .++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            588999999999999999999976    22             122222    2233330  1222   23555778899


Q ss_pred             EcCCccccccc-----------------------------ccCCCC-CCcEEEEEE-eCC----CHhHHHHHHHHHHHHH
Q 029215           60 DTAGQEDYNRL-----------------------------RPLSYR-GADVFILAF-SLI----SKASYENVAKKWIPEL  104 (197)
Q Consensus        60 D~~G~~~~~~~-----------------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~~  104 (197)
                      ||+|...-..+                             ....+. .+++.++|. |.+    .++.+......++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99994321111                             111233 688888888 664    1234445557888888


Q ss_pred             hhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC--CCCHHHHHHHHHHH
Q 029215          105 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT--QQNVKAVFDAAIKV  176 (197)
Q Consensus       105 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~~  176 (197)
                      .+.  ++|+++++|+.|....            ........+...++. |++.+|+..  .+.+..+++.+.-.
T Consensus       177 k~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            888  9999999999994321            133344566677886 777777765  34555555555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.2e-11  Score=92.25  Aligned_cols=169  Identities=18%  Similarity=0.207  Sum_probs=104.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC----CCCCCCCCce-e----eceeEEE------EECCeEEEEEEEEcCCccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTV-F----DNFSANV------VVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~----~~~~~~~~t~-~----~~~~~~~------~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      +..+++.++|...||||||.+++..-    .|....+++. +    .-++...      ...++++.+.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            34699999999999999999999753    2322222222 1    1111111      124567888999999986432


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ........-.|..++|+|+..+..-+.....++..+.    -...++|+||+|..++.++       ..-..+.++.+.+
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr-------~ski~k~~kk~~K  153 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQR-------ASKIEKSAKKVRK  153 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhh-------hhHHHHHHHHHHH
Confidence            2222222346889999999887655555344444433    2346788899888765431       0112223333333


Q ss_pred             Hh------CCCeEEEeccCCC----CCHHHHHHHHHHHHcCCchh
Q 029215          149 LI------GSPAYIECSSKTQ----QNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       149 ~~------~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~  183 (197)
                      .+      |..|++++||+.|    +++.++.+.+-..+..+.+.
T Consensus       154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd  198 (522)
T KOG0461|consen  154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD  198 (522)
T ss_pred             HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence            32      3358999999999    77888888888887766543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=2.1e-11  Score=87.56  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=85.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC---------C---CCCCceeece-eEEEEE-CC------------------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---------T---DYVPTVFDNF-SANVVV-DG------------------   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---------~---~~~~t~~~~~-~~~~~~-~~------------------   51 (197)
                      .....|.++|+.|+|||||++++......         +   .......... ...+.. ++                  
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            45788999999999999999988753110         0   0000000000 001111 11                  


Q ss_pred             -eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215           52 -STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        52 -~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  130 (197)
                       ....+.++++.|.-....   .+....+..+.|+|+.+.+.....   ....   .  ..|.++++||+|+.+...   
T Consensus       100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~---~--~~a~iiv~NK~Dl~~~~~---  165 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK---YPGM---F--KEADLIVINKADLAEAVG---  165 (207)
T ss_pred             cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh---hHhH---H--hhCCEEEEEHHHccccch---
Confidence             124566788888211111   111134556678888765432111   1111   1  567899999999965321   


Q ss_pred             CCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          131 DHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                             .......+..+.. ...+++++||+++.|++++++++.+.
T Consensus       166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                   1223333333333 33489999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.37  E-value=1.5e-12  Score=110.55  Aligned_cols=116  Identities=14%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCce------------eece---eEEEEE--------------CCe
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTV------------FDNF---SANVVV--------------DGS   52 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~------------~~~~---~~~~~~--------------~~~   52 (197)
                      .+.-+|+|+|+.++|||||+++|+...-  ......+.            +..+   ...+.+              .+.
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            3567999999999999999999875321  11100000            0000   011111              123


Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      .+.++++||||+.+|.......++.+|++++|+|+..+-..... ..| ..+...  ++|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~-~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHH-HHHHHC--CCCEEEEEECCccc
Confidence            57889999999999988777888899999999999887554443 333 333334  79999999999987

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.37  E-value=1.8e-11  Score=91.39  Aligned_cols=116  Identities=16%  Similarity=0.242  Sum_probs=68.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCC----------CCce-eeceeEEEEECCeEEEEEEEEcCCcccc------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY------   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~------   67 (197)
                      -.|+|+|+|.+|+|||||+|.|+........          ..+. .......+..++..+.+.++||||.-..      
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999986543221          0111 1122334455778899999999992211      


Q ss_pred             ------------c-------ccccCCC--CCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           68 ------------N-------RLRPLSY--RGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        68 ------------~-------~~~~~~~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                                  .       ...+...  ...|+++|.++.+... +-.++  ..++.+..   .+++|-|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls~---~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLSK---RVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHTT---TSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhcc---cccEEeEEecccccCH
Confidence                        0       0011111  2479999999987531 22232  34444444   5889999999998543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.36  E-value=3.2e-12  Score=97.83  Aligned_cols=171  Identities=15%  Similarity=0.157  Sum_probs=83.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCC-CCCce--eece-eEEEEECCeEEEEEEEEcCCcc--cccc---cccCCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNF-SANVVVDGSTVNLGLWDTAGQE--DYNR---LRPLSY   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~t~--~~~~-~~~~~~~~~~~~l~i~D~~G~~--~~~~---~~~~~~   75 (197)
                      .+++|+|+|.+|+|||||||.|.+-.-.++ ..++.  ++.. ...+.. ...-.+.+||+||..  .|..   +...-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            468999999999999999999975322211 11111  1111 122222 221246699999953  2211   112234


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc--CCcccccCCCCCccccHHHHHHHHHH----
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPITTAQGEELRKL----  149 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (197)
                      ..-|.+|++.+-    .|....-.+...++..  ++|+.+|-+|+|..  ..+...+. .-.......++++-+..    
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~-~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPR-TFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-ST-T--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCc-ccCHHHHHHHHHHHHHHHHHH
Confidence            567887776653    2333334556677777  89999999999962  11100000 00001111222222222    


Q ss_pred             h--CCCeEEEeccCCC--CCHHHHHHHHHHHHcCCchh
Q 029215          150 I--GSPAYIECSSKTQ--QNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       150 ~--~~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~~~  183 (197)
                      .  ..+++|-+|+.+-  .+...+.+.+.+.+..+++.
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            1  3347888999874  56888889998888766543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.36  E-value=1.3e-11  Score=103.69  Aligned_cols=116  Identities=16%  Similarity=0.093  Sum_probs=77.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCC-ce---------------e-eceeEEEEECCeEEEEEEEEcCCcc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVP-TV---------------F-DNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~-t~---------------~-~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +.-+|+++|+.++|||||+++|+...  ......+ +.               . .........++..+.++++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            45689999999999999999997532  1110000 00               0 0001111224446788999999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      +|.......++.+|++++|+|+..+...+.. ..|. .....  +.|.++++||+|...
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhhc
Confidence            9887777788899999999999876444333 3333 22333  578899999999863

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.35  E-value=2.3e-11  Score=92.05  Aligned_cols=135  Identities=19%  Similarity=0.168  Sum_probs=86.3

Q ss_pred             EEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH----------HHHHHHHHHHHhh-hC-CCCCE
Q 029215           46 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY----------ENVAKKWIPELRH-YA-PGVPI  113 (197)
Q Consensus        46 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~-~~-~~~p~  113 (197)
                      .+.+.+  ..+.++|++||...+.-|.+.+.++++++||+++++-+..          .+. ..+...+-+ .. .++++
T Consensus       189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS-~~LF~sI~n~~~F~~tsi  265 (354)
T KOG0082|consen  189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES-LKLFESICNNKWFANTSI  265 (354)
T ss_pred             EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH-HHHHHHHhcCcccccCcE
Confidence            344455  6677999999998889999999999999999999874322          222 122223322 22 68999


Q ss_pred             EEEeecCCccCCcccc-----cCCCCCccccHHHHHHHHH-----HhCC--Ce--EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          114 ILVGTKLDLRDDKQFF-----IDHPGAVPITTAQGEELRK-----LIGS--PA--YIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       114 iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~--~~--~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++++||.|+.++....     .-.+-......+++..+.+     .+..  .+  +..+.|.+..+|+.+|+.+.+.+..
T Consensus       266 iLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  266 ILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             EEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence            9999999997653321     0000011123334433322     2211  12  2347888889999999999998877


Q ss_pred             Cchh
Q 029215          180 PPKQ  183 (197)
Q Consensus       180 ~~~~  183 (197)
                      .+-+
T Consensus       346 ~nlk  349 (354)
T KOG0082|consen  346 NNLK  349 (354)
T ss_pred             HHHH
Confidence            6644

>PTZ00416 elongation factor 2; Provisional

Probab=99.35  E-value=2.3e-12  Score=109.29  Aligned_cols=115  Identities=11%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCcee--ec----------e---eEEEEEC--------CeEEEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVF--DN----------F---SANVVVD--------GSTVNLGLW   59 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~--~~----------~---~~~~~~~--------~~~~~l~i~   59 (197)
                      +.-+|+++|+.++|||||+++|+...  ......++..  +.          +   ...+.+.        +..+.++++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            45699999999999999999998531  1111111100  00          0   0111222        225678899


Q ss_pred             EcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        60 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      ||||+.+|.......++.+|++++|+|+.++-..+..  ..+..+...  ++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence            9999998887777788899999999999887544443  333444444  78999999999996

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.34  E-value=4.1e-11  Score=86.35  Aligned_cols=162  Identities=19%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCC---CCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------c---c
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------R---P   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~---~   72 (197)
                      ++|+|+|..|+||||++|.+++.......   .+.+..........++  ..+.++||||..+....        .   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987653322   1222222233446677  45669999995332211        0   1


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccCCcccccCCCCCcccc----HHHHHH
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPIT----TAQGEE  145 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~  145 (197)
                      ......|++++|+.+... +-.+  ...+..+...+.   -..++||.|..|......       .....    ....+.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-------~~~~l~~~~~~~l~~  148 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDS-------LEDYLKKESNEALQE  148 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-------HHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecCcc-hHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccccc-------HHHHHhccCchhHhH
Confidence            123568999999998832 2111  222233333221   245888888888765431       00011    123556


Q ss_pred             HHHHhCCCeEEEeccC------CCCCHHHHHHHHHHHHcCCc
Q 029215          146 LRKLIGSPAYIECSSK------TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       146 ~~~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +.+..+. .|+..+.+      ....+.++++.+-+.+....
T Consensus       149 li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  149 LIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            6777776 77777766      33567888888777765543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.33  E-value=3.3e-11  Score=79.30  Aligned_cols=113  Identities=26%  Similarity=0.371  Sum_probs=77.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCC-CceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +|++++|..|+|||+|+.++....+...+. ++..                          +........+.++.+++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998777654332 2222                          2223344566789999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      +.++.+++...   |...+.... .+.|.++++||.|+.+...          +..++.        . +++++|++++.
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~--------~-~~~~~s~~~~~  112 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEG--------L-EFAETSAKTPE  112 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHH--------H-HHHHHhCCCcc
Confidence            99999988654   555554433 4788999999999843211          222222        2 45577888888


Q ss_pred             CHH
Q 029215          165 NVK  167 (197)
Q Consensus       165 ~i~  167 (197)
                      |+.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.32  E-value=2.3e-10  Score=82.05  Aligned_cols=154  Identities=17%  Similarity=0.225  Sum_probs=105.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYR   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~   76 (197)
                      -.-+|+++|.|.+|||||+..++.... ...|..|+.+.++..+.+++  -.+++.|+||.-+-.+.-       ....+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            457899999999999999999986543 35677777777888888888  456799999964433221       22346


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHh----hhCCC------------------------------------------
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELR----HYAPG------------------------------------------  110 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~------------------------------------------  110 (197)
                      .||.+++|.|++..+.-....+.-++.+-    ...|+                                          
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            79999999999876544332222222111    11111                                          


Q ss_pred             --------------------CCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215          111 --------------------VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       111 --------------------~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (197)
                                          ++++-|-||+|.               ++.++..+++++-+.   +.+|+....|++.++
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ll  280 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLL  280 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHH
Confidence                                244445555554               677888888887654   567888889999999


Q ss_pred             HHHHHHHc
Q 029215          171 DAAIKVVL  178 (197)
Q Consensus       171 ~~i~~~~~  178 (197)
                      +.+.+.+.
T Consensus       281 e~iWe~l~  288 (364)
T KOG1486|consen  281 ERIWEELN  288 (364)
T ss_pred             HHHHHHhc
Confidence            99998764

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=4e-12  Score=89.68  Aligned_cols=119  Identities=24%  Similarity=0.358  Sum_probs=81.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-----cccccCCCCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRG   77 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~~   77 (197)
                      ..-||+++|.+|+|||++-..++.+-..  ....+.+.+....+...-| ++.+++||++||+.+     .......+.+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            3468999999999999998777654321  1111111222222333323 267889999999844     2345667899


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccCC
Q 029215           78 ADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+++++|||++..+-..++ ..+   ++.+.++.|...+++..+|+|+...
T Consensus        82 V~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             heeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence            9999999999998766665 333   4556666688889999999999764

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.28  E-value=3e-10  Score=87.06  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=56.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeE---------------EEEEEEEcCCcccccc-
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNR-   69 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~-   69 (197)
                      ++|+++|.|++|||||+|++++... ..+++.|+.......+.+.+..               ..+.+.|+||...-.+ 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            7899999999999999999998653 3455666544443333333321               2578999999653211 


Q ss_pred             ---c---ccCCCCCCcEEEEEEeCC
Q 029215           70 ---L---RPLSYRGADVFILAFSLI   88 (197)
Q Consensus        70 ---~---~~~~~~~~~~~i~v~d~~   88 (197)
                         +   .-..++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1   122357899999999984

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.28  E-value=2e-11  Score=84.86  Aligned_cols=63  Identities=22%  Similarity=0.152  Sum_probs=45.6

Q ss_pred             EEEEEEcCCccc----ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215           55 NLGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (197)
Q Consensus        55 ~l~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (197)
                      .+.|+||||...    ....+..+++.+|++++|.+++...+-.+. ..+.+.....  ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            467999999643    224456677899999999999987665555 6666666666  45589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.27  E-value=9.3e-12  Score=97.58  Aligned_cols=161  Identities=26%  Similarity=0.386  Sum_probs=124.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+|+.|+|..++|||+|+.+++.+.|..... ..+..+...+...+....+.+.|.+|...     ..+-.++|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            46899999999999999999999998865533 44566777777888888888999888432     2345678999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |.+.|..+|+.+ ..+...+..+.  ..+|+++++++.-.....        .+.+..+.+..++..+....+|++++.+
T Consensus       103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen  103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence            999999999998 66665665544  478888888775544322        2335566666776666656999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.+++.+|+.+...+...
T Consensus       174 Glnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999998877654

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4.6e-11  Score=91.59  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHh--hCCCCC---------------CCCCce----eeceeEEEEECCeEEEEEEEEcCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYT--SNTFPT---------------DYVPTV----FDNFSANVVVDGSTVNLGLWDTAG   63 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~--~~~~~~---------------~~~~t~----~~~~~~~~~~~~~~~~l~i~D~~G   63 (197)
                      +.-..+|+-+|.+|||||-..|+  ++.+..               ++....    ....+..+..+...+.+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            34567899999999999998875  222210               000000    111233444555568889999999


Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      |++|+.-.-+.+..+|.+++|+|+..+-..+..  .+++..+-.  ++|++-++||.|-..
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~  147 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREG  147 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeecccccc
Confidence            999987766677889999999999876444443  555555554  999999999999743

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.22  E-value=1e-10  Score=88.59  Aligned_cols=105  Identities=18%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      .+.+.|+||+|.-...   ......+|.++++.+....+.+...    ...+.    ++|.++|+||+|+.....     
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~----~~~l~----~~~~ivv~NK~Dl~~~~~-----  189 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI----KAGLM----EIADIYVVNKADGEGATN-----  189 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH----HHHHh----hhccEEEEEcccccchhH-----
Confidence            4778899999853211   1235567888887554433332222    22222    678899999999975421     


Q ss_pred             CCCccccH--H----HHHHHHHH-hCC-CeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          133 PGAVPITT--A----QGEELRKL-IGS-PAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       133 ~~~~~~~~--~----~~~~~~~~-~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                           ...  .    ....+... .++ .+++++||+++.|++++++++.+...
T Consensus       190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 000  0    00111111 111 36899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.22  E-value=2.6e-10  Score=78.90  Aligned_cols=102  Identities=16%  Similarity=0.054  Sum_probs=63.8

Q ss_pred             EEEEEEEcCCcccccccccCCCC-CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      ..+.|++..| ..-   .+.... ..+.-|+|+|++.++....   +..+.+     -..=++|+||.|+.+.-.     
T Consensus        97 ~Dll~iEs~G-NL~---~~~sp~L~d~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~v~-----  159 (202)
T COG0378          97 LDLLFIESVG-NLV---CPFSPDLGDHLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPYVG-----  159 (202)
T ss_pred             CCEEEEecCc-cee---cccCcchhhceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHHhC-----
Confidence            4566777777 111   111122 2348899999988753221   100111     113389999999987643     


Q ss_pred             CCCccccHHHHHHHHHH-hCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          133 PGAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                           .+.+...+-+++ .+..+++++|+++|.|++++++|+...+
T Consensus       160 -----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         160 -----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             -----ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence                 444555555554 4555899999999999999999987754

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.4e-10  Score=91.68  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=94.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC--CCCC------------------------CCCCce-e---eceeEEEEECCeEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV-F---DNFSANVVVDGSTV   54 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~------------------------~~~~t~-~---~~~~~~~~~~~~~~   54 (197)
                      ..++++++|...+|||||+.+++..  ....                        +..... +   +-......++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            5789999999999999999887632  1100                        000000 0   00111222334457


Q ss_pred             EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHH-----HHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  129 (197)
                      .+.+.|.||+-.|-..+.....+||+.++|+|++-.+.-..+     ..+....++.. .-..++|++||+|+.+=.+  
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq--  332 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ--  332 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH--
Confidence            788999999999988887788899999999999765322111     12222222222 1345788999999976211  


Q ss_pred             cCCCCCccccHHHHHHHH-HHhCC----CeEEEeccCCCCCHHHH
Q 029215          130 IDHPGAVPITTAQGEELR-KLIGS----PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~  169 (197)
                         + ...........|. +..|+    ..++++|+..|+|+-..
T Consensus       333 ---~-RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  333 ---D-RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ---H-HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence               0 0001112223333 33332    26899999999997544

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.9e-10  Score=95.01  Aligned_cols=118  Identities=21%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC--CCCC--C-CCC-ce----------e-eceeE--EEEECCeEEEEEEEEcCC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--D-YVP-TV----------F-DNFSA--NVVVDGSTVNLGLWDTAG   63 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~--~-~~~-t~----------~-~~~~~--~~~~~~~~~~l~i~D~~G   63 (197)
                      ..+.-+|.++|+..+|||||..+++..  ....  . ..+ +.          + +..+.  .+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            346789999999999999999998732  1110  0 000 00          0 01111  222332 47889999999


Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      |-+|.....+.++-+|++++|+|+..+-..+.- .-|.+ ...+  ++|.++++||+|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rq-a~~~--~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQ-ADKY--GVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHH-Hhhc--CCCeEEEEECcccccc
Confidence            999999988999999999999999987655554 44443 3444  7999999999998754

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.5e-10  Score=87.85  Aligned_cols=154  Identities=18%  Similarity=0.119  Sum_probs=101.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCC----CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .|+..|.-.-|||||+..+.+..-.    ....+++.+.--..  .......+.|+|.||++++-+..-..+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y--~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY--RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe--ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4788899999999999999875421    11222222221112  22233477899999999987766666677899999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--hCCCeEEEecc
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--IGSPAYIECSS  160 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa  160 (197)
                      |++.++.-..+..  +-+..+.-.  ++ ..++|+||+|..++..           .....++....  +...+++.+|+
T Consensus        80 vV~~deGl~~qtg--EhL~iLdll--gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~  144 (447)
T COG3276          80 VVAADEGLMAQTG--EHLLILDLL--GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSA  144 (447)
T ss_pred             EEeCccCcchhhH--HHHHHHHhc--CCCceEEEEeccccccHHH-----------HHHHHHHHHhhccccccccccccc
Confidence            9999766444443  222233322  34 4599999999976421           11111222222  44457899999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 029215          161 KTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~  178 (197)
                      ++|+||+++.+.|.+...
T Consensus       145 ~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         145 KTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999999885

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=5.8e-10  Score=81.70  Aligned_cols=165  Identities=19%  Similarity=0.248  Sum_probs=104.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC----------CCCC-CCCCc------eeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN----------TFPT-DYVPT------VFDNFSANVVVDGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~----------~~~~-~~~~t------~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (197)
                      +.+.+|..+|.-.-|||||.-.++.-          .|.. +..|.      +...-...+....+.|.  ..|+||+.+
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhya--hVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYA--HVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEE--eccCCChHH
Confidence            46799999999999999999766531          1100 00111      11111223334454454  899999998


Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      |-..+.....+.|+.|+|++++|..-.+.....+  ..++.  +.|. ++++||+|+.++.+       ....-..+.++
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv--Gvp~ivvflnK~Dmvdd~e-------llelVemEvre  156 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV--GVPYIVVFLNKVDMVDDEE-------LLELVEMEVRE  156 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc--CCcEEEEEEecccccCcHH-------HHHHHHHHHHH
Confidence            8776666667899999999999987666552322  22233  6765 56679999987543       12234457778


Q ss_pred             HHHHhCCC----eEEEeccCCC-C-------CHHHHHHHHHHHHcCCc
Q 029215          146 LRKLIGSP----AYIECSSKTQ-Q-------NVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       146 ~~~~~~~~----~~~~~Sa~~~-~-------~i~~~~~~i~~~~~~~~  181 (197)
                      +...++++    |++.-||..- +       .|.++++.+-..+..+.
T Consensus       157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe  204 (394)
T COG0050         157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE  204 (394)
T ss_pred             HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence            88888763    5666666531 2       25666666666665554

>smart00053 DYNc Dynamin, GTPase

Probab=99.13  E-value=5.7e-10  Score=81.28  Aligned_cols=69  Identities=23%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             EEEEEEEcCCcccc-------------cccccCCCC-CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215           54 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK  119 (197)
Q Consensus        54 ~~l~i~D~~G~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (197)
                      ..+.++||||....             ..+...+++ ..+++++|+|+.....-.+. ..+...+...  +.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence            56789999997422             112344556 45699999998654332232 2444444444  8999999999


Q ss_pred             CCccCC
Q 029215          120 LDLRDD  125 (197)
Q Consensus       120 ~D~~~~  125 (197)
                      .|....
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            999754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.13  E-value=6.6e-10  Score=82.60  Aligned_cols=152  Identities=12%  Similarity=0.046  Sum_probs=81.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC-------CCCCceee--ce----eEEEEEC--------------------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-------DYVPTVFD--NF----SANVVVD--------------------   50 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~t~~~--~~----~~~~~~~--------------------   50 (197)
                      ...+-+.|+|++|+|||||++++.......       ....+..+  .+    ...+.++                    
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~  181 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP  181 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence            456789999999999999998877531111       00011100  00    0011111                    


Q ss_pred             CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  130 (197)
                      .....+.|+++.|.-......  .+ ..+.-+.++++...+..  . ..+-..+     ..+-++|+||+|+.+...   
T Consensus       182 ~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dk--p-lKyp~~f-----~~ADIVVLNKiDLl~~~~---  247 (290)
T PRK10463        182 LDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDK--P-LKYPHMF-----AAASLMLLNKVDLLPYLN---  247 (290)
T ss_pred             hcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccccc--c-hhccchh-----hcCcEEEEEhHHcCcccH---
Confidence            112344566666641111100  11 12334566777644221  1 1111111     456799999999975311   


Q ss_pred             CCCCCccccHHHHHHHH-HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          131 DHPGAVPITTAQGEELR-KLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                             ...+...+.. +.....+++++||++|.|++++++||.+.
T Consensus       248 -------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        248 -------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             -------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence                   1233333333 33445589999999999999999999774

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=7.8e-10  Score=81.95  Aligned_cols=166  Identities=17%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC---CCCCC----------CCCce-e--------eceeE--EEEEC----CeEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN---TFPTD----------YVPTV-F--------DNFSA--NVVVD----GSTVNL   56 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~---~~~~~----------~~~t~-~--------~~~~~--~~~~~----~~~~~l   56 (197)
                      ..++|.++|+..-|||||...|.+-   .+.++          |..+. .        ..+..  .....    .-.-.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            4799999999999999999888742   11110          00000 0        00000  00001    112356


Q ss_pred             EEEEcCCcccccccccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC
Q 029215           57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  135 (197)
                      .|.|.|||+-.-+.+-+-..-.|++++|+.++.+ ...+.. +.+ ..+.-. .-..++++=||+|+...+.        
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~-EHl-~AleIi-gik~iiIvQNKIDlV~~E~--------  157 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTR-EHL-MALEII-GIKNIIIVQNKIDLVSRER--------  157 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchH-HHH-HHHhhh-ccceEEEEecccceecHHH--------
Confidence            6999999997666555555557999999999874 223332 212 111111 0346788889999975432        


Q ss_pred             ccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          136 VPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ....++++++|.+.-  ...|++++||..+.|++-+++.|.+.+..+.
T Consensus       158 AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         158 ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            112455666666543  2238999999999999999999999987664

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.11  E-value=1.5e-09  Score=85.18  Aligned_cols=124  Identities=17%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~  122 (197)
                      ..+.++|++|+...+.-|.+++.+++++|||+++++-          ..+.+....|-..+.... .++|+++++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            4567999999998899999999999999999998652          234444344544444433 68999999999998


Q ss_pred             cCCccccc-----CCCCC-cc--ccHHHHHHHHHHh--------C--C-CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          123 RDDKQFFI-----DHPGA-VP--ITTAQGEELRKLI--------G--S-PAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       123 ~~~~~~~~-----~~~~~-~~--~~~~~~~~~~~~~--------~--~-~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ........     .-+.. ..  -+.+.+..+....        .  . .-+..++|.+...+..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            54321110     00111 11  3445555544432        1  1 1234689999999999999987754

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.10  E-value=3e-09  Score=80.34  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=73.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CCCce-eeceeEEEEECCeEEEEEEEEcCCcccc---ccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY---NRL   70 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~---~~~   70 (197)
                      ..++|+++|++|+|||||+|.|++....+.          ..++. .......+.-++..+.++++||||.-++   ...
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            479999999999999999999997644322          11222 1222334445678899999999993211   011


Q ss_pred             ----------------------ccC-CC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           71 ----------------------RPL-SY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        71 ----------------------~~~-~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                                            .+. .+  ..+|+++|.+..+.. .+..+.-..+..+..   .+.+|-|+.|+|....
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK---RVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc---ccCeeeeeeccccCCH
Confidence                                  111 12  247889998886643 222222244455554   4778888899998543

>PRK00098 GTPase RsgA; Reviewed

Probab=99.10  E-value=6.5e-10  Score=84.09  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=65.1

Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ..++|.+++|+|+.+++........|+..+...  ++|+++|+||+|+.+..           .......+..+..+. +
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-~  143 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-D  143 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-e
Confidence            488999999999988866555546777666554  89999999999996322           112233445556676 8


Q ss_pred             EEEeccCCCCCHHHHHHHHH
Q 029215          155 YIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~  174 (197)
                      ++++||+++.|++++++.+.
T Consensus       144 v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        144 VLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EEEEeCCCCccHHHHHhhcc
Confidence            99999999999999998874

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1e-09  Score=78.25  Aligned_cols=117  Identities=15%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCC---------CCCCceeec-eeEEEEECCeEEEEEEEEcCCcccc---cc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---------DYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY---NR   69 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~---------~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~---~~   69 (197)
                      ....|+|+|+|.+|.|||||+|.++.....+         .++.|++.. ....+.-++..+.++++||||.-+.   ..
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            3457999999999999999999998643322         222333322 2345556788899999999993211   11


Q ss_pred             c-----------------------ccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           70 L-----------------------RPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        70 ~-----------------------~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      .                       ....+.  .+++++|.+..+.. ++.-+.-++++.+.+-   +.++-|+-|+|..
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v---vNvvPVIakaDtl  197 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV---VNVVPVIAKADTL  197 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence            1                       122233  36788888877654 2222222444444443   5677788899973

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.4e-09  Score=81.34  Aligned_cols=116  Identities=20%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCC--------CCC-ce-eeceeEEEEECCeEEEEEEEEcCCcccc-------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVP-TV-FDNFSANVVVDGSTVNLGLWDTAGQEDY-------   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------~~~-t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------   67 (197)
                      ..|+++++|++|.|||||+|.|+...+.++        ... +. -......+.-++..++|+++||||.-+.       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            359999999999999999999987654332        011 11 1222333444678899999999993211       


Q ss_pred             ------------------cccccCCCC--CCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           68 ------------------NRLRPLSYR--GADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        68 ------------------~~~~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                                        ..+.+..+.  .+|+++|.+..+.. -..-++  ..+..+..   .+.+|-|+.|+|....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~~Mk~l~~---~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI--EFMKKLSK---KVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--HHHHHHhc---cccccceeeccccCCH
Confidence                              111222333  57899999887654 222222  33444433   5788888899998544

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=3.2e-10  Score=91.02  Aligned_cols=116  Identities=21%  Similarity=0.222  Sum_probs=83.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-------------ecee-----EEE---EECCeEEEEEEEEcC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-------------DNFS-----ANV---VVDGSTVNLGLWDTA   62 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-------------~~~~-----~~~---~~~~~~~~l~i~D~~   62 (197)
                      ....++.++|+-+.|||+|+..|.....++....+..             ...+     ..+   ...++.+.+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            3568999999999999999999986544322111110             0000     011   124677899999999


Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      ||-.|.......++.+|++++++|+-++-.+..-  .++...-+.  +.|+++|+||+|..
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq~--~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQN--RLPIVVVINKVDRL  262 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHhc--cCcEEEEEehhHHH
Confidence            9999998888889999999999999988776654  333333333  79999999999963

>cd01855 YqeH YqeH

Probab=99.08  E-value=4.6e-10  Score=79.61  Aligned_cols=95  Identities=21%  Similarity=0.241  Sum_probs=65.4

Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      +..++..+++.+|++++|+|+++...-      |...+.....+.|+++|+||+|+....           ........+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence            466777889999999999999876421      111121122478999999999996432           222333333


Q ss_pred             H-----HHhC--CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          147 R-----KLIG--SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       147 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      .     +..+  ..+++++||+++.|++++++++.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3     2222  236899999999999999999998774

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=5.1e-10  Score=79.83  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=93.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-cc--ccCCCCCCcEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RL--RPLSYRGADVFI   82 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~--~~~~~~~~~~~i   82 (197)
                      ..+|+++|...+||||+..-.+++..+.+...-..+.....-.+.+.-+.+++||.|||-.+- ..  ....++.+.+.+
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            356999999999999998766654322211100000000011122345789999999986543 22  234578899999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHh---hhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh--CC-CeEE
Q 029215           83 LAFSLISKASYENVAKKWIPELR---HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI--GS-PAYI  156 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~  156 (197)
                      ||+|+.+.  +.+....+...+.   .-.+++.+-+.+.|.|-..+.-..   +.++.+-......++..-  +. ..++
T Consensus       107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki---etqrdI~qr~~d~l~d~gle~v~vsf~  181 (347)
T KOG3887|consen  107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI---ETQRDIHQRTNDELADAGLEKVQVSFY  181 (347)
T ss_pred             EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhh---hhHHHHHHHhhHHHHhhhhccceEEEE
Confidence            99998654  2222233333333   333788899999999976543210   000001000011111110  11 1344


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .+|- ....+-+.|..+++.+..+
T Consensus       182 LTSI-yDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  182 LTSI-YDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             Eeee-cchHHHHHHHHHHHHHhhh
Confidence            4554 4577999999999887654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=9.5e-09  Score=78.08  Aligned_cols=84  Identities=20%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEEC----------------CeEEEEEEEEcCCccc--
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVD----------------GSTVNLGLWDTAGQED--   66 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~----------------~~~~~l~i~D~~G~~~--   66 (197)
                      .+++.++|.|+||||||+|.++..... .+|+.++.+.......+.                -....+.|+|++|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987653 567776633322222111                1235688999998543  


Q ss_pred             --ccccccCC---CCCCcEEEEEEeCCC
Q 029215           67 --YNRLRPLS---YRGADVFILAFSLIS   89 (197)
Q Consensus        67 --~~~~~~~~---~~~~~~~i~v~d~~~   89 (197)
                        -..+-..+   ++++|+++.|+++++
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              23333333   578999999999864

>cd01859 MJ1464 MJ1464

Probab=99.07  E-value=3.4e-10  Score=77.73  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      +.+.++.++++|++++|+|++++....+  ..+...+...  +.|+++|+||+|+.+...            ......+.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~------------~~~~~~~~   66 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLEL--GKKLLIVLNKADLVPKEV------------LEKWKSIK   66 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHhC--CCcEEEEEEhHHhCCHHH------------HHHHHHHH
Confidence            3445566778999999999987643332  1232333322  789999999999853211            11111233


Q ss_pred             HHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          148 KLIGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ...+. +++.+||+++.|++++++.+.+.+.
T Consensus        67 ~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          67 ESEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             HhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            33454 7899999999999999999988775

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.05  E-value=7.5e-09  Score=84.16  Aligned_cols=118  Identities=15%  Similarity=0.124  Sum_probs=71.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-------c---cc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------L---RP   72 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~---~~   72 (197)
                      ..++|+|+|.+|+||||++|.+++... .. ...+.+..........++  ..+.++||||......       +   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            357999999999999999999998653 22 211222222222233455  4677999999765321       0   11


Q ss_pred             CCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-C--CCCEEEEeecCCccCC
Q 029215           73 LSYR--GADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRDD  125 (197)
Q Consensus        73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~~  125 (197)
                      .++.  .+|++|+|..++.......- ..++..+...+ +  -..+|||.|..|..+.
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            1222  47999999877533221111 24455555444 1  3467999999998864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.03  E-value=8e-10  Score=80.15  Aligned_cols=101  Identities=15%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             EEEEEEEEcCC--cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215           53 TVNLGLWDTAG--QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        53 ~~~l~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  130 (197)
                      .+.+.|++|.|  |.+..     ...-+|.+++|......+..+.+..-+++.        +=++|+||+|......   
T Consensus       121 G~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~---  184 (266)
T PF03308_consen  121 GFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADR---  184 (266)
T ss_dssp             T-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH---
T ss_pred             CCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHH---
Confidence            36677888876  43322     234589999999887777666653333332        3389999999654432   


Q ss_pred             CCCCCccccHHHHHHHHHHhC------CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          131 DHPGAVPITTAQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                              ...+.+.......      .+|++.+||.++.|++++++.|.+..
T Consensus       185 --------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  185 --------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             --------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence                    2333333333221      25899999999999999999988753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.02  E-value=2.6e-09  Score=82.15  Aligned_cols=92  Identities=18%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             ccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      .+.+..+.++|.+++|+|+.++. ....+ ..|+......  ++|+++|+||+|+.....            ........
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~~--~ip~ILVlNK~DLv~~~~------------~~~~~~~~  145 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAEST--GLEIVLCLNKADLVSPTE------------QQQWQDRL  145 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEEchhcCChHH------------HHHHHHHH
Confidence            44455688999999999998775 33333 5666555433  899999999999954321            12222333


Q ss_pred             HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          148 KLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ..++. +++.+||+++.|++++++.+...
T Consensus       146 ~~~g~-~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        146 QQWGY-QPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             HhcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence            45676 88999999999999999988653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.00  E-value=3.1e-09  Score=80.04  Aligned_cols=86  Identities=17%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             CCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           74 SYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .+.++|.+++|+|+.++. ++..+ ..|+..+...  ++|+++|+||+|+.+..            ............+.
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g~  139 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALALGY  139 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhCCC
Confidence            378899999999999887 77766 6677766655  89999999999996531            11122333344666


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHH
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                       +++.+||+++.|+++++..+..
T Consensus       140 -~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         140 -PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -eEEEEECCCCccHHHHHhhhcc
Confidence             8999999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=4.7e-09  Score=79.47  Aligned_cols=160  Identities=16%  Similarity=0.189  Sum_probs=99.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC--------------C--c--ee------eceeEEEEE----------CC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV--------------P--T--VF------DNFSANVVV----------DG   51 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~--------------~--t--~~------~~~~~~~~~----------~~   51 (197)
                      .++++|+|...+|||||+--|+.+.......              .  |  +.      +.....+.+          +.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            5899999999999999997777654422100              0  0  00      000000111          11


Q ss_pred             eEEEEEEEEcCCcccccccccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  129 (197)
                      ....+.|+|++|+..|.......+.  -.|..++|+++...-....  .+-+..+...  ++|++++.+|+|+.......
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence            2345679999999998876655543  3788999999877644433  3445566666  99999999999998763221


Q ss_pred             --------------cCCCCCccccHHHHHHHHHHh---CCCeEEEeccCCCCCHHHH
Q 029215          130 --------------IDHPGAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAV  169 (197)
Q Consensus       130 --------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~  169 (197)
                                    ...-.++.-+.+++...+++.   ++.|+|.+|+..|+|++-+
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                          011111222445555555443   4568899999999998644

>cd01900 YchF YchF subfamily

Probab=98.97  E-value=1.4e-09  Score=80.83  Aligned_cols=80  Identities=19%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeE---------------EEEEEEEcCCcccccc---
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNR---   69 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~---   69 (197)
                      |+++|.|+||||||+|++++... ..+++.++.......+.+.+..               ..++++|+||...-.+   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998664 3455666544444444443321               2588999999653221   


Q ss_pred             -cc---cCCCCCCcEEEEEEeCC
Q 029215           70 -LR---PLSYRGADVFILAFSLI   88 (197)
Q Consensus        70 -~~---~~~~~~~~~~i~v~d~~   88 (197)
                       +.   -..++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             11   12356899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.96  E-value=1.2e-09  Score=82.88  Aligned_cols=171  Identities=17%  Similarity=0.131  Sum_probs=101.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce--------------eeceeE---------EEEE-----------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNFSA---------NVVV-----------   49 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~--------------~~~~~~---------~~~~-----------   49 (197)
                      +.++.+.++|....|||||+-.|..+...+....+.              ....+.         .+..           
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            457899999999999999998887665533211110              000000         0000           


Q ss_pred             --CCeEEEEEEEEcCCcccccccccC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           50 --DGSTVNLGLWDTAGQEDYNRLRPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        50 --~~~~~~l~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                        ...+-.+.|.||.|++.|.....+  .-+..|..++++.+++..+-..-  +-+......  ..|++++.+|+|+.++
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk--EHLgi~~a~--~lPviVvvTK~D~~~d  270 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK--EHLGIALAM--ELPVIVVVTKIDMVPD  270 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh--Hhhhhhhhh--cCCEEEEEEecccCcH
Confidence              111244569999999988654322  23568999999999998665443  334444444  8999999999999876


Q ss_pred             ccccc-------------CCCCCccccHHH----HHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          126 KQFFI-------------DHPGAVPITTAQ----GEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       126 ~~~~~-------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .....             .-+... .+.+.    +.......+..|+|.+|+.+|+|++-+ +.+...+.++
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~v-k~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~r  340 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIV-KDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPKR  340 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceee-eccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCcc
Confidence            43210             000000 01111    111111223568999999999998644 4444444443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.95  E-value=8.8e-09  Score=75.92  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      .+.+.|++|.|.-....   ....-+|.++++.-..-++..+....-+++        +.=++|+||.|.......    
T Consensus       143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~a----  207 (323)
T COG1703         143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEKA----  207 (323)
T ss_pred             CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHHH----
Confidence            46677888877422111   123457989988877777777766333332        234899999996544210    


Q ss_pred             CCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          133 PGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                          .-....+.++..     ....+|++.+||..|+|++++++.+.+..
T Consensus       208 ----~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         208 ----ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             ----HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence                001111112211     11235789999999999999999988764

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.93  E-value=3.4e-09  Score=78.70  Aligned_cols=149  Identities=17%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC-CceeeceeEEEE-ECCeEEEEEEEEcCCcc---------cccccccCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVV-VDGSTVNLGLWDTAGQE---------DYNRLRPLS   74 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~---------~~~~~~~~~   74 (197)
                      .--|.|+|..++|||||++.|+.-...+... ..+-+....... .++  ..+.+.||-|.-         .|++.. ..
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATL-ee  254 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATL-EE  254 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence            4568999999999999999999654433211 112222222222 234  244588999932         122221 22


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP----IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ...+|.++-|.|++.+..-... ...+..++... +..|    ++=|-||+|..+...           .       ...
T Consensus       255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e-------~E~  315 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------E-------EEK  315 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------c-------ccc
Confidence            4579999999999999766555 66666666653 2222    455678888765431           0       112


Q ss_pred             hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          150 IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++   .+.+||++|+|++++.+.+-..+..
T Consensus       316 n~---~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  316 NL---DVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             CC---ccccccccCccHHHHHHHHHHHhhh
Confidence            22   4678999999999999887766543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.89  E-value=5.6e-09  Score=81.00  Aligned_cols=96  Identities=22%  Similarity=0.369  Sum_probs=68.7

Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      .+.|..+...+.+.++++++|+|+.+..      ..|...+.....+.|+++|+||+|+.+..           ...+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence            4567777777888999999999997653      23333443333478999999999996532           223333


Q ss_pred             H----HHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHH
Q 029215          144 E----ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       144 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      .    ++++..+..  .++.+||++|.|++++++.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            3    345556652  48899999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.88  E-value=2e-08  Score=77.34  Aligned_cols=88  Identities=17%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      .++|.+++|++++...++..+ ..|+......  ++|.++|+||+|+.+...         ...........+..+. ++
T Consensus       119 ANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~~--~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~v  185 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNII-DRYLVACETL--GIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-RV  185 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-eE
Confidence            569999999999877788777 7787655544  799999999999965321         0011222333445676 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      +++||+++.|++++++.+...
T Consensus       186 ~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        186 LMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEEeCCCCcCHHHHHHHHhhC
Confidence            999999999999999998763

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.86  E-value=8.2e-09  Score=69.66  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      +++++|.+|+|||||+|++.+............+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999876532111111122233344444   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.82  E-value=2.1e-08  Score=68.89  Aligned_cols=90  Identities=17%  Similarity=0.053  Sum_probs=58.1

Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      .++++|.+++|+|+.++.....  ..+...+.....+.|+++|+||+|+.+...           .......+.+.+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence            4678999999999988633211  233334433333689999999999954321           11122222222222 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHH
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ..+.+||+.+.|++++.+.+.+.+
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            357799999999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.79  E-value=1.2e-08  Score=74.39  Aligned_cols=164  Identities=16%  Similarity=0.040  Sum_probs=90.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC-ceeece-eEEEEECCeEEEEEEEEcCCc----------ccccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNF-SANVVVDGSTVNLGLWDTAGQ----------EDYNRLR   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-t~~~~~-~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~   71 (197)
                      ....+++++|-+++|||+|++.++.......... ..+... ...+.+.   ..+.+.|.||.          .++..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence            4568999999999999999999987643222111 222111 1222222   35568999991          1222233


Q ss_pred             cCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           72 PLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        72 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..++.   +.--+++.+|++-+-.-.+.  ..++.+.+.  ++|+.+|.||||...........+....  ......+.+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i--~~~f~~l~~  284 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNI--KINFQGLIR  284 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccc--eeehhhccc
Confidence            33332   33345566677654222221  223344445  8999999999998754331111111000  001112222


Q ss_pred             Hh--CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          149 LI--GSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       149 ~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ..  ..+|.+.+|+.++.|++.++-.|.+.
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhhh
Confidence            11  12366779999999999888777654

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.79  E-value=6.4e-08  Score=73.55  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCC------------------CCCCceee--------------------ceeEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT------------------DYVPTVFD--------------------NFSANV   47 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~------------------~~~~t~~~--------------------~~~~~~   47 (197)
                      ..+++|+|...+|||||+--|+++++..                  ...++.+.                    ...+..
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            5799999999999999996665443311                  00000000                    011111


Q ss_pred             EECCeEEEEEEEEcCCcccccccccC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           48 VVDGSTVNLGLWDTAGQEDYNRLRPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        48 ~~~~~~~~l~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ...+....+.|+|++|++.|....-.  .-+-.|...+++-++-.--  .+..+-+......  .+|+++|.+|+|+.+.
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmTKEHLgLALaL--~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMTKEHLGLALAL--HVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--eccHHhhhhhhhh--cCcEEEEEEeeccCcH
Confidence            11223346779999999998764322  2244677788777654321  1112222222223  7999999999999886


Q ss_pred             c
Q 029215          126 K  126 (197)
Q Consensus       126 ~  126 (197)
                      +
T Consensus       289 N  289 (641)
T KOG0463|consen  289 N  289 (641)
T ss_pred             H
Confidence            5

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=2e-08  Score=76.01  Aligned_cols=117  Identities=21%  Similarity=0.189  Sum_probs=74.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce--eeceeEEEEE------CC---------------------------
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVV------DG---------------------------   51 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~--~~~~~~~~~~------~~---------------------------   51 (197)
                      -=|+++|.-..|||||++-|+.+.+++...+..  .+++...+.-      .|                           
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            458999999999999999999988764322211  1122111110      00                           


Q ss_pred             ------eEEEEEEEEcCCccc-----------ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE
Q 029215           52 ------STVNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII  114 (197)
Q Consensus        52 ------~~~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i  114 (197)
                            ..-.+.++||||.-.           |......+.+.+|.++++||+-..+--++. ...+..++.+  .-.+-
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiR  215 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIR  215 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeE
Confidence                  023567999999432           222233455789999999998665444444 5555666655  56678


Q ss_pred             EEeecCCccCCc
Q 029215          115 LVGTKLDLRDDK  126 (197)
Q Consensus       115 iv~nK~D~~~~~  126 (197)
                      ||+||.|..+.+
T Consensus       216 VVLNKADqVdtq  227 (532)
T KOG1954|consen  216 VVLNKADQVDTQ  227 (532)
T ss_pred             EEeccccccCHH
Confidence            899999987653

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.73  E-value=9.1e-07  Score=68.58  Aligned_cols=155  Identities=17%  Similarity=0.248  Sum_probs=96.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-----------------CC----CCCCceeecee----EEEEE-CCeEEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-----------------PT----DYVPTVFDNFS----ANVVV-DGSTVNLGLW   59 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~----~~~~t~~~~~~----~~~~~-~~~~~~l~i~   59 (197)
                      -+-+.|+||..+|||||+.||+.-..                 +.    ....|++..+.    ..+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            47799999999999999999985322                 11    12222233331    23333 4667899999


Q ss_pred             EcCCc--------cc--ccc----cc---------------cCCCCC-C-cEEEEEEeCC--C--HhHHHHHHHHHHHHH
Q 029215           60 DTAGQ--------ED--YNR----LR---------------PLSYRG-A-DVFILAFSLI--S--KASYENVAKKWIPEL  104 (197)
Q Consensus        60 D~~G~--------~~--~~~----~~---------------~~~~~~-~-~~~i~v~d~~--~--~~s~~~~~~~~~~~~  104 (197)
                      |+.|-        .+  -..    -|               +..+.. + =++++.-|.+  +  ++.+..+.+..+..+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            99881        10  000    01               111222 2 2444444542  2  566777767778888


Q ss_pred             hhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC--CCCHHHHHHHHHH
Q 029215          105 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT--QQNVKAVFDAAIK  175 (197)
Q Consensus       105 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~  175 (197)
                      .+.  ++|.++++|-.+-...            .....+.++..+|+. |++++++..  .+.+..+++.++-
T Consensus       177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVLY  234 (492)
T ss_pred             HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHHh
Confidence            888  9999999998886543            356677788888997 888887765  3445555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01858 NGP_1 NGP-1

Probab=98.73  E-value=4.7e-08  Score=67.16  Aligned_cols=55  Identities=16%  Similarity=0.123  Sum_probs=35.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ..++++++|.+|+|||||+|++.+...  ....++++..  ...+...+   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcCC
Confidence            467899999999999999999987543  2233333321  11222222   2569999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.71  E-value=5.1e-08  Score=67.86  Aligned_cols=54  Identities=22%  Similarity=0.185  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      .++++++|.|++|||||+|++.+...  ....++++...  ..+..+.   .+.++||||.
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcCC
Confidence            48999999999999999999997653  23333333221  1222222   4679999993

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.70  E-value=1.6e-07  Score=64.44  Aligned_cols=83  Identities=18%  Similarity=0.080  Sum_probs=54.5

Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHH-HHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           79 DVFILAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      |++++|+|+.++.+....  .+. ..+...  +.|+++|+||+|+.+...           .......+....+ ..++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~--~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKEK--GKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhcC--CCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence            689999999887554422  222 233333  799999999999854211           0111112222333 36889


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029215          158 CSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      +||+++.|++++.+.+.+..
T Consensus        65 vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EeccCCcChhhHHHHHHHHh
Confidence            99999999999999998764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.65  E-value=1e-07  Score=66.45  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ..++++++|.+++|||||++++....+..  ....++..  ...+...   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            45799999999999999999999876521  22222211  1222232   24679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=8.6e-08  Score=78.40  Aligned_cols=116  Identities=16%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCce------eec-------eeEEEEECCeEEEEEEEEcCCccc
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTV------FDN-------FSANVVVDGSTVNLGLWDTAGQED   66 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~------~~~-------~~~~~~~~~~~~~l~i~D~~G~~~   66 (197)
                      ..+..-+++++-+..-|||||...|....  +.....++.      .+.       .+..+..-...+.++++|+|||-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            34567789999999999999998887421  111111111      000       111222323558899999999999


Q ss_pred             ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (197)
                      |.+......+-+|++++++|+..+-..+.. ..+.+.+.+   +...++|+||+|
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~~---~~~~~lvinkid  135 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWIE---GLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHHc---cCceEEEEehhh
Confidence            999888888889999999999876444433 222222222   577899999999

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=3.4e-07  Score=68.74  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC----------CCCC-------CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN----------TFPT-------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~----------~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      .+.+++|.-+|...-|||||-..++.-          .|.+       ...+.+.......+....+.|.  =.|+||+.
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA  128 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA  128 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence            456799999999999999999776631          1110       0111111111222333344443  67999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE  145 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      +|-..+..-..+.|+.|+|+.++|..-.+.-...++   ....-=..+++.+||.|+.++.+       ..++-+-++++
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL---ArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RE  198 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL---ARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRE  198 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH---HHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHH
Confidence            988777777788999999999999866655422222   22211234677889999985532       22233446677


Q ss_pred             HHHHhCC----CeEEEeccC---CCCC-------HHHHHHHHHHHHcCC
Q 029215          146 LRKLIGS----PAYIECSSK---TQQN-------VKAVFDAAIKVVLQP  180 (197)
Q Consensus       146 ~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~~~  180 (197)
                      +...+|+    .|++.-||+   .|.+       |.++++.+-..+..+
T Consensus       199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P  247 (449)
T KOG0460|consen  199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP  247 (449)
T ss_pred             HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence            7777764    367765554   4422       555555555555443

>cd01856 YlqF YlqF

Probab=98.62  E-value=1.5e-07  Score=65.57  Aligned_cols=88  Identities=24%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+.++|.+++|+|++++......  .+...+    .+.|+++|+||+|+.+...            .....+..+..+
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~   75 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------TKKWLKYFESKG   75 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------HHHHHHHHHhcC
Confidence            3456789999999999876443221  222222    2679999999999853211            111112222333


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      . .++.+||+++.|++++.+.+.+.+.
T Consensus        76 ~-~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          76 E-KVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            3 6889999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00092 GTP-binding protein YchF

Probab=98.62  E-value=1.9e-07  Score=71.92  Aligned_cols=82  Identities=17%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCcccccc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~   69 (197)
                      +++.++|.|++|||||++.++....  ..+|+.++.......+.+.+.               ...+.+.|+||...-.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765  345555554443333444332               13577999999654221


Q ss_pred             ----c---ccCCCCCCcEEEEEEeCC
Q 029215           70 ----L---RPLSYRGADVFILAFSLI   88 (197)
Q Consensus        70 ----~---~~~~~~~~~~~i~v~d~~   88 (197)
                          +   .-..++++|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2   122467899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.61  E-value=1.6e-07  Score=70.41  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=37.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ..++++++|.||+|||||+|+|.+...  ....++++..  ...+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            468999999999999999999987653  2233333221  22333332   3579999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.61  E-value=1.4e-07  Score=63.61  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=51.0

Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ..++.+|++++|+|+.++.+..+  ..+...+.....+.|+++|+||+|+.+..            ......+..+..+.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~   72 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI   72 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC
Confidence            35678999999999988765442  12333333222478999999999985432            12233444445564


Q ss_pred             CeEEEeccCCCCC
Q 029215          153 PAYIECSSKTQQN  165 (197)
Q Consensus       153 ~~~~~~Sa~~~~~  165 (197)
                       .++++||+++.+
T Consensus        73 -~ii~iSa~~~~~   84 (141)
T cd01857          73 -VVVFFSALKENA   84 (141)
T ss_pred             -eEEEEEecCCCc
Confidence             789999998753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.60  E-value=5e-07  Score=65.48  Aligned_cols=84  Identities=18%  Similarity=0.214  Sum_probs=55.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-------cccCCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~   78 (197)
                      -++.++|.|.+||||++..+.+..- ...+..|+-..+.......+  -.+++.|+||.-+-..       ......+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4889999999999999998876432 33455555555555554555  4677999999543221       112234568


Q ss_pred             cEEEEEEeCCCHhH
Q 029215           79 DVFILAFSLISKAS   92 (197)
Q Consensus        79 ~~~i~v~d~~~~~s   92 (197)
                      +.+++|.|+..+-+
T Consensus       138 nli~~vld~~kp~~  151 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLS  151 (358)
T ss_pred             cEEEEEeeccCccc
Confidence            88899999866433

>cd01859 MJ1464 MJ1464

Probab=98.58  E-value=2.3e-07  Score=63.60  Aligned_cols=57  Identities=21%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ...+++++|.+++|||||++++..... ....++.+......+...+  ..+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcCC
Confidence            457899999999999999999986542 2223333222222221122  25779999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.57  E-value=6.9e-08  Score=65.88  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCC------C-CCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPT------D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~------~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      -.++++|++|||||||+|.|....-..      . ..+...+.....+...+.   -.++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            468999999999999999999763211      1 111111222333334332   2489999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.57  E-value=3e-07  Score=69.37  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=37.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      ..++++++|.++||||||+|+|.+...  ....++++...  ..+..++   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence            468999999999999999999998653  22333333221  2233332   36699999973

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=1.7e-07  Score=75.04  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=77.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC-CC---C--CCCCceeec-----------eeEEEEECCeEEEEEEEEcCCcccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FP---T--DYVPTVFDN-----------FSANVVVDGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~---~--~~~~t~~~~-----------~~~~~~~~~~~~~l~i~D~~G~~~~   67 (197)
                      +.-+|.++-.-.+||||+-++++... ..   +  ....++.+.           .+.......+.++++++|||||-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            34567788888999999998876321 10   0  001111111           1111222233689999999999999


Q ss_pred             cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .-...+.++-.|++++++|+..+-.-+.. .-|. .+..+  ++|.+..+||+|....
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~r-Q~~ry--~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWR-QMKRY--NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhH-HHHH-HHHhc--CCCeEEEEehhhhcCC
Confidence            98888899999999999998776433333 3443 44555  8999999999997543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=4.9e-07  Score=67.87  Aligned_cols=90  Identities=22%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...++.+|++++|+|+.++.+....  .+...+    .+.|+++|+||+|+.+...            .....+..+..+
T Consensus        16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~------------~~~~~~~~~~~~   77 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV------------TKQWLKYFEEKG   77 (276)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH------------HHHHHHHHHHcC
Confidence            4457789999999999876443221  222222    2689999999999854211            111111222334


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      . +++.+||+++.|++++.+.+.+.+...
T Consensus        78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        78 I-KALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            4 788999999999999999998887543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.50  E-value=5.2e-07  Score=67.70  Aligned_cols=85  Identities=21%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECC---------------eEEEEEEEEcCCccccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDYN   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~---------------~~~~l~i~D~~G~~~~~   68 (197)
                      +.+++.++|.|+||||||+|.|+.... ..+++.++.+.....+.+..               ....++++|++|.-.-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            568999999999999999999998765 44555555443333333321               34678899999865432


Q ss_pred             ----cccc---CCCCCCcEEEEEEeCCC
Q 029215           69 ----RLRP---LSYRGADVFILAFSLIS   89 (197)
Q Consensus        69 ----~~~~---~~~~~~~~~i~v~d~~~   89 (197)
                          .+-.   ..++.+|+++-|+++.+
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                2222   34577999999998754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.49  E-value=5.3e-07  Score=61.81  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ...+++++|.+|+|||||+|.+.....  .....+++.....  +...   ..+.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence            457899999999999999999997643  2223333322222  2222   24679999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=98.49  E-value=3e-07  Score=65.21  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      ..+++++|.+|+|||||+|.|....
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999998753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.47  E-value=4.7e-07  Score=69.28  Aligned_cols=55  Identities=24%  Similarity=0.249  Sum_probs=37.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ..++++|+|.|+||||||||+|.+...  ....++++  .-...+.++.   .+.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCc
Confidence            458899999999999999999998754  22222222  1122222333   2669999995

>PRK13796 GTPase YqeH; Provisional

Probab=98.46  E-value=7.4e-07  Score=69.40  Aligned_cols=82  Identities=20%  Similarity=0.376  Sum_probs=56.6

Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH----HHHHHhCCC
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE----ELRKLIGSP  153 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  153 (197)
                      .+.+++|+|+.|..      ..|...+.....+.|+++|+||+|+.+..           ...+.+.    .+++..+..
T Consensus        70 ~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~g~~  132 (365)
T PRK13796         70 DALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKELGLR  132 (365)
T ss_pred             CcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhcCCC
Confidence            34899999998743      23334444433478999999999996532           2223333    334555542


Q ss_pred             --eEEEeccCCCCCHHHHHHHHHHH
Q 029215          154 --AYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       154 --~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                        .++.+||+++.|++++++.+.+.
T Consensus       133 ~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        133 PVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHh
Confidence              57899999999999999999775

>PRK12288 GTPase RsgA; Reviewed

Probab=98.46  E-value=3e-07  Score=70.88  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhCC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~   30 (197)
                      ++++|.+|||||||+|+|....
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            6899999999999999999754

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.44  E-value=2.2e-07  Score=66.23  Aligned_cols=129  Identities=17%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC--CCCCEEEEeecC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA--PGVPIILVGTKL  120 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~  120 (197)
                      .+.+.+.|.+|+...+.-|.++++++..++|++..+..          ...++. ..++..+-.+.  .+.++++.+||-
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEechh
Confidence            35566888888877777777777777666666554432          222333 23334444433  589999999999


Q ss_pred             CccCCcccc-----c-CCCCCccccHHHHHHHHHHh----C-C-Ce---EEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215          121 DLRDDKQFF-----I-DHPGAVPITTAQGEELRKLI----G-S-PA---YIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       121 D~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~----~-~-~~---~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      |+.++....     + .+-..-..+...+++|...+    + . ..   -..+.|.+.+|+.-+|..+.+++++.+-
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            998764331     0 00011112333444444332    1 0 01   1246778889999999999988876543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=2.4e-06  Score=68.38  Aligned_cols=112  Identities=20%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.++-++|+||||+|||||++.|...-- .   .|+...........+..-++.|.++|.+  ...+. ....-||.|++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~t-k---~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlL  139 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT-K---QTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLL  139 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHH-H---hhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEE
Confidence            3578899999999999999987765311 0   1111111222335667778889999943  22221 23345899999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCc
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDK  126 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~  126 (197)
                      ++|.+-+-..+.+  +++..+..+  +.| ++-|++..|+....
T Consensus       140 lIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         140 LIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             EeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence            9999876444554  566666666  555 45688999997653

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4.6e-06  Score=67.91  Aligned_cols=119  Identities=15%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeec----------------------------------------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDN----------------------------------------   42 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~----------------------------------------   42 (197)
                      +...||++.|....||||++|.++...+.+ ...+++.-.                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            356899999999999999999998654422 111111000                                        


Q ss_pred             ---eeEEEEECCe-----EEEEEEEEcCCcc---cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC
Q 029215           43 ---FSANVVVDGS-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV  111 (197)
Q Consensus        43 ---~~~~~~~~~~-----~~~l~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (197)
                         .-..+.++..     .=.+.++|.||.+   ...+....+..++|++|||.++.+.-+..+.  .++....+.  +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CC
Confidence               0001111111     1145688888865   3334445566789999999999887665554  444444444  44


Q ss_pred             CEEEEeecCCccCCc
Q 029215          112 PIILVGTKLDLRDDK  126 (197)
Q Consensus       112 p~iiv~nK~D~~~~~  126 (197)
                      .++|+-||.|...+.
T Consensus       263 niFIlnnkwDasase  277 (749)
T KOG0448|consen  263 NIFILNNKWDASASE  277 (749)
T ss_pred             cEEEEechhhhhccc
Confidence            566777888987653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.42  E-value=3.8e-06  Score=64.12  Aligned_cols=94  Identities=12%  Similarity=0.063  Sum_probs=56.2

Q ss_pred             EEEEEEEEcCCccccccc--------c---cCC-CCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215           53 TVNLGLWDTAGQEDYNRL--------R---PLS-YRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK  119 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~--------~---~~~-~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (197)
                      .+.+.++||||.......        .   ... -..++..++|.|++... .+... ..+...      --+.-+|+||
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~f~~~------~~~~giIlTK  268 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KAFHEA------VGLTGIILTK  268 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HHHHhh------CCCCEEEEEC
Confidence            467889999996432211        0   011 12467889999998653 22222 222211      1244788999


Q ss_pred             CCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215          120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (197)
                      .|....              ...+...+...+. |+..++  +|++++++-
T Consensus       269 lD~t~~--------------~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        269 LDGTAK--------------GGVVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            996542              2345566677787 877777  677777654

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.41  E-value=2.2e-06  Score=62.33  Aligned_cols=88  Identities=18%  Similarity=0.129  Sum_probs=54.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCC--CCCCCceeeceeEEEEEC-CeEEEEEEEEcCCccccccc------cc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP--TDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRL------RP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~------~~   72 (197)
                      .+..-|.|+|++++|||+|+|++++.  .|.  +...+++...+....... +....+.++||+|.......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            35677899999999999999999987  552  222333333333322221 23467889999997543221      11


Q ss_pred             CCCCC--CcEEEEEEeCCCHh
Q 029215           73 LSYRG--ADVFILAFSLISKA   91 (197)
Q Consensus        73 ~~~~~--~~~~i~v~d~~~~~   91 (197)
                      ..+..  ++.+||..+.+...
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            12223  78888877765543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.39  E-value=1.2e-06  Score=63.63  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=52.0

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~  122 (197)
                      +.++.+|.+||...+.-|...+.+..++|||+..++-          ..+.+.+..+...+.... ..+.+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            6688999999999999999999999999999987652          223333233333333222 46789999999998


Q ss_pred             cCC
Q 029215          123 RDD  125 (197)
Q Consensus       123 ~~~  125 (197)
                      ...
T Consensus       282 lae  284 (379)
T KOG0099|consen  282 LAE  284 (379)
T ss_pred             HHH
Confidence            544

>PRK01889 GTPase RsgA; Reviewed

Probab=98.39  E-value=2.1e-06  Score=66.61  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCCC
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  153 (197)
                      ..++|.+++|+++...-....+ ..++..+...  ++|.++|+||+|+.+..             .+....+.. ..+. 
T Consensus       110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g~-  172 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPGV-  172 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCCC-
Confidence            4789999999999644333333 6666665555  88899999999996531             111222222 2344 


Q ss_pred             eEEEeccCCCCCHHHHHHHHH
Q 029215          154 AYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~  174 (197)
                      +++.+|++++.|++++..++.
T Consensus       173 ~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        173 PVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             cEEEEECCCCccHHHHHHHhh
Confidence            889999999999999998875

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.37  E-value=9.9e-06  Score=64.74  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             EEEEEEEcCCccc-------------ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215           54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (197)
Q Consensus        54 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (197)
                      -++.+.|+||.-.             ...+...+.++.+++|+|+--.+-+.-......+...+...  +...|+|++|.
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKV  489 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKV  489 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeec
Confidence            3567899999321             12345667889999999984333222222224444444444  88899999999


Q ss_pred             CccCCcccccCCCCCccccHHHHHHHHHH
Q 029215          121 DLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      |+.+.+.          -+++.+++....
T Consensus       490 DlAEknl----------A~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNV----------ASPSRIQQIIEG  508 (980)
T ss_pred             chhhhcc----------CCHHHHHHHHhc
Confidence            9988754          456666665543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.36  E-value=1.8e-06  Score=66.21  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             EEEEEEEcCCccccccc-c---cCC--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           54 VNLGLWDTAGQEDYNRL-R---PLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                      +.+.++||+|....... .   ...  .-+.|.+++|.|++...........+...+      -+--+|+||.|..... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------GIDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------CCCEEEEeeecCCCCc-
Confidence            56889999996543211 1   111  125788999999976543222212222211      2347888999986532 


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (197)
                                   ..+..++...+. |+..++  +|.+++++.
T Consensus       296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLI  322 (336)
T ss_pred             -------------cHHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence                         244455556676 777776  688887765

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.36  E-value=2.7e-05  Score=52.70  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=40.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA   62 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~   62 (197)
                      +..+||.+-|+|||||||++.++...--..  ..+....+...+..+++..-+.+.|+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            456899999999999999997776432111  123344556666677877888888887

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=3.6e-07  Score=67.70  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=72.7

Q ss_pred             EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      .+.|.|+||++..-+.+-....-.|++++++..+.. ...+.......-.+..   -..++++-||+|+..+..      
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~---LkhiiilQNKiDli~e~~------  196 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK---LKHIIILQNKIDLIKESQ------  196 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh---hceEEEEechhhhhhHHH------
Confidence            355999999987665544444446777887766542 2222220111111111   245788889999976532      


Q ss_pred             CCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          134 GAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                        .....++++.|.+.-  ...|++++||.-++|++-+.+.|.+.+.-+.
T Consensus       197 --A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv  244 (466)
T KOG0466|consen  197 --ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV  244 (466)
T ss_pred             --HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence              112344555565543  2238999999999999999999999987553

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.36  E-value=1.8e-06  Score=65.13  Aligned_cols=89  Identities=25%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+..+|++++|+|+.++.+...  ..+...+.    +.|+++|+||+|+.+...            ........+..+
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~------------~~~~~~~~~~~~   80 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV------------TKKWIEYFEEQG   80 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH------------HHHHHHHHHHcC
Confidence            445778999999999977644322  12222222    689999999999853210            111122222334


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      . +++.+||+++.|++++.+.+.+.+..
T Consensus        81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         81 I-KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4 78899999999999999998887643

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.35  E-value=2.9e-06  Score=58.30  Aligned_cols=64  Identities=13%  Similarity=-0.028  Sum_probs=36.6

Q ss_pred             EEEEEEEcCCcccccccc--------cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215           54 VNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  122 (197)
                      ....++|++|..+-....        ....-.++.+++++|+............+...+...     =++|+||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence            456789999964322111        112335889999999865433221113334444332     3778999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.33  E-value=2.1e-06  Score=76.09  Aligned_cols=113  Identities=24%  Similarity=0.202  Sum_probs=61.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCCCCC----CCc--eeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFPTDY----VPT--VFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS   74 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~   74 (197)
                      .+|+|++|+||||++.+- +-.++-..    ..+  ............+   ...++||+|..-        ....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999776 22221110    001  0101111111222   234899999321        11223332


Q ss_pred             C---------CCCcEEEEEEeCCCH-----hHHHHHHHHH---HHHHhhhC-CCCCEEEEeecCCccCC
Q 029215           75 Y---------RGADVFILAFSLISK-----ASYENVAKKW---IPELRHYA-PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        75 ~---------~~~~~~i~v~d~~~~-----~s~~~~~~~~---~~~~~~~~-~~~p~iiv~nK~D~~~~  125 (197)
                      +         +-.+++|+++|+.+.     +........+   +..+.... ...||.+++||+|+...
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            2         358999999998653     2121111222   33333333 58999999999998643

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.30  E-value=4.2e-06  Score=62.55  Aligned_cols=94  Identities=14%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             EEEEEEEEcCCcccccccc-----------c-CCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215           53 TVNLGLWDTAGQEDYNRLR-----------P-LSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK  119 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~-----------~-~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (197)
                      .+.+.++||||........           . ..-..+|.+++|+|++... .+... ..+.+.+      -+.-+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEEc
Confidence            3678899999965432211           1 1112478999999997542 22222 2222211      245788899


Q ss_pred             CCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215          120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (197)
                      .|.....              ..+..+....+. |+..++  +|.+++++-
T Consensus       227 lDe~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       227 LDGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             cCCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            9986532              345556666676 777776  667676654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.28  E-value=1.8e-06  Score=66.69  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhCC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~   30 (197)
                      ++|+|++|||||||+|.|....
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999998653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.26  E-value=1.4e-06  Score=64.15  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++++|.+|||||||+|+|....
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            67899999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.25  E-value=1.5e-06  Score=65.57  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -.++++|++|+|||||+|.|.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=8e-06  Score=59.97  Aligned_cols=117  Identities=19%  Similarity=0.263  Sum_probs=70.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-----eEEEEECCeEEEEEEEEcCCc-------cccccc-
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-----SANVVVDGSTVNLGLWDTAGQ-------EDYNRL-   70 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~l~i~D~~G~-------~~~~~~-   70 (197)
                      ...|+|+-+|..|.|||||++.|+...+.....+.....+     .....-.+..+.+.+.||.|.       +.|..+ 
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            3579999999999999999999999887554333332222     222333566788999999982       111111 


Q ss_pred             ------cc-------------CCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           71 ------RP-------------LSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        71 ------~~-------------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                            ..             ..+  ...++++|.+..+.. ++..+.-..+..+..   .+.+|-|+-|.|-..
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds---kVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS---KVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh---hhhhHHHHHHhhhhh
Confidence                  00             012  246777888777653 444442222333332   456666777888643

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.24  E-value=1.8e-05  Score=62.47  Aligned_cols=113  Identities=15%  Similarity=0.009  Sum_probs=61.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh-----C-CC----CCCCCCce-------e--eceeEEEEEC--C-------------
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------F--DNFSANVVVD--G-------------   51 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~-----~-~~----~~~~~~t~-------~--~~~~~~~~~~--~-------------   51 (197)
                      +--|+++|++||||||++..|-.     + ..    .+.+.+..       .  ..........  +             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            56799999999999999977641     1 10    22222111       0  0011010000  0             


Q ss_pred             -eEEEEEEEEcCCcccccccc----cC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           52 -STVNLGLWDTAGQEDYNRLR----PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        52 -~~~~l~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                       ..+.+.|+||+|........    ..  ...+++-+++|+|++-++.-.+....+.    +.  --+.-+|+||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~----~~--~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK----DS--VDVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH----hc--cCCcEEEEECccCCC
Confidence             24678899999954332110    11  1235788999999976543322213222    21  235678899999854

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.21  E-value=1.4e-06  Score=64.89  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=34.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC------CCCCC-CCceeeceeEEEEEC-CeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~------~~~~~-~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~   68 (197)
                      ..+++|++|||||||+|+|....      +.+.. .+...+....-+..+ +.    .++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCccC
Confidence            56899999999999999998632      11111 111223333344443 32    279999976544

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.20  E-value=2.1e-05  Score=58.79  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ..+.+-...++|-.++|+.+.+++--......++-.....  ++.-+|++||+|+.++..          ...++.....
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y  137 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREY  137 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHH
Confidence            3444555667888888999888865444446666555555  888888999999987643          1113455667


Q ss_pred             HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          148 KLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ...|. +.+.+|+++++|++++.+.+...
T Consensus       138 ~~~gy-~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         138 EDIGY-PVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             HhCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence            77887 88999999999999998887653

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=7.2e-05  Score=54.27  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             eeEEEEECCCCC--cHHHHHHHHhhCCCCCCCCCceeec-eeEEEEE--CCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            6 FIKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         6 ~~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      ...++|+|.+|+  ||.+|+.+|....|.+......... +...+..  ....+.+.+-  +-.+++.--.....+-..+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcis--hicde~~lpn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCIS--HICDEKFLPNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEee--cccchhccCCcccccceee
Confidence            356899999999  9999999998877755433322111 1222211  1111222222  1111211111122344678


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCcccc-------------------------cCC--
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFF-------------------------IDH--  132 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~-------------------------~~~--  132 (197)
                      ++++||.+....+..+ +.|+.-....  .. -.+.++||.|..+....-                         +++  
T Consensus        82 ~vmvfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete  158 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE  158 (418)
T ss_pred             EEEEEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence            9999999999888887 8887533222  22 236788999976542110                         010  


Q ss_pred             -------CCCccccHHHHHHHHHHhCCCeEEEeccCC------------CCCHHHHHHHHHHHHcCCc
Q 029215          133 -------PGAVPITTAQGEELRKLIGSPAYIECSSKT------------QQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       133 -------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~~~~~~~  181 (197)
                             ..........+..++...++ .+++.++.+            -.|++.+|..+-..++...
T Consensus       159 gssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgm  225 (418)
T KOG4273|consen  159 GSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGM  225 (418)
T ss_pred             cccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccc
Confidence                   01111122345677778887 899988743            2479999998887776543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.15  E-value=1e-05  Score=44.82  Aligned_cols=43  Identities=26%  Similarity=0.389  Sum_probs=30.5

Q ss_pred             CcEEEEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215           78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (197)
Q Consensus        78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (197)
                      +++++|++|.+..  -+.++. ..++..++..+++.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            6889999999774  556666 677888888889999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=9.3e-07  Score=68.22  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=81.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh--CCC---CC-CCCCce-----------eeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS--NTF---PT-DYVPTV-----------FDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~--~~~---~~-~~~~t~-----------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      .-+|.++..-.+||||.-.|++.  +..   .+ +...|.           .+..+..+..+.+.++++++||||+.+|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            45789999999999999988763  111   00 000010           11223334445555888999999999999


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      -...+.++-.|+++.|||++-+-..+.+ ..|.+. ..+  ++|-...+||+|....
T Consensus       117 leverclrvldgavav~dasagve~qtl-tvwrqa-dk~--~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA-DKF--KIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCccccee-eeehhc-ccc--CCchhhhhhhhhhhhh
Confidence            9888899999999999999987655555 555432 223  7899999999998654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.13  E-value=5e-06  Score=64.73  Aligned_cols=54  Identities=22%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      .+++++|.+|||||||+|++.....       ....++|+....  .+...+   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCCC
Confidence            4799999999999999999987432       223333332221  222322   24599999964

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.13  E-value=4.4e-06  Score=63.42  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++++|++|+|||||+|.|.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999998654

>PRK13796 GTPase YqeH; Provisional

Probab=98.11  E-value=4.9e-06  Score=64.89  Aligned_cols=54  Identities=22%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      .++.++|.+|||||||+|+|.....       ....++|+....  .+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence            4789999999999999999985421       122333332221  2223322   2599999963

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.00  E-value=8.7e-05  Score=57.75  Aligned_cols=92  Identities=14%  Similarity=0.003  Sum_probs=49.3

Q ss_pred             EEEEEEEEcCCcccccccc----c--CCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCC--CCEEEEeecCCcc
Q 029215           53 TVNLGLWDTAGQEDYNRLR----P--LSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPG--VPIILVGTKLDLR  123 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~----~--~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~  123 (197)
                      ...+.++||+|........    .  .....+.-.++|++++.. +...+....+..........  -+-=+|+||.|..
T Consensus       215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt  294 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA  294 (374)
T ss_pred             CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence            3577899999965432211    0  112234556888898764 44444433333222111111  1235778999986


Q ss_pred             CCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ..              .-.+..+....+. |+..++
T Consensus       295 ~~--------------~G~~l~~~~~~~l-Pi~yvt  315 (374)
T PRK14722        295 SN--------------LGGVLDTVIRYKL-PVHYVS  315 (374)
T ss_pred             CC--------------ccHHHHHHHHHCc-CeEEEe
Confidence            53              3455666777776 554443

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.00  E-value=0.0011  Score=45.64  Aligned_cols=144  Identities=8%  Similarity=0.018  Sum_probs=93.8

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+..+.-.|+++|..+.++..|.+.+....-      +               +.+++.=......- ......-...|.
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~---------------~~l~Vh~a~sLPLp-~e~~~lRprIDl   67 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDK------E---------------FKLKVHLAKSLPLP-SENNNLRPRIDL   67 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhcc------c---------------eeEEEEEeccCCCc-ccccCCCceeEE
Confidence            4556788999999999999999999876211      0               11112211111000 001111224699


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|++|....-|++.. +.-+..+...+.--.+.++.+-....+..          .+..+++.+++..+.. |++.+.-
T Consensus        68 IVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~----------sv~~~~V~kla~~y~~-plL~~~l  135 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHC----------SVHPNEVRKLAATYNS-PLLFADL  135 (176)
T ss_pred             EEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCccccc----------ccCHHHHHHHHHHhCC-CEEEeec
Confidence            9999999999999988 44444444433223445555555544432          2789999999999998 9998888


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 029215          161 KTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~  178 (197)
                      .+.++...+-+.+.+.+.
T Consensus       136 e~~~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  136 ENEEGRTSLAQRLLRMLQ  153 (176)
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence            888887777777776654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.00  E-value=1.1e-05  Score=57.90  Aligned_cols=120  Identities=14%  Similarity=0.047  Sum_probs=66.1

Q ss_pred             EEEEEEEEcCCcccccccc------cCCCCCCcEEEEE---EeC---CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeec
Q 029215           53 TVNLGLWDTAGQEDYNRLR------PLSYRGADVFILA---FSL---ISKASYENVAKKWIPELRHYA-PGVPIILVGTK  119 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~------~~~~~~~~~~i~v---~d~---~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK  119 (197)
                      .....++|+|||-++-...      .+.++..+.=+.+   +|.   +++..|-..   ++-.+.... -..|-+=|+.|
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK  172 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSK  172 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhH
Confidence            3455699999986543211      1112223333333   333   556555543   222222222 37888999999


Q ss_pred             CCccCCcccc--------------------cCCCCCc--cccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215          120 LDLRDDKQFF--------------------IDHPGAV--PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       120 ~D~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      +|+.......                    ...+..+  ....+.+..+.+.++...|...+..+.+.+-.+...|-+
T Consensus       173 ~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk  250 (290)
T KOG1533|consen  173 ADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK  250 (290)
T ss_pred             hHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence            9997543310                    0111111  123456667777888777777777777777777766654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.98  E-value=9e-05  Score=58.97  Aligned_cols=83  Identities=16%  Similarity=0.044  Sum_probs=46.4

Q ss_pred             EEEEEEEcCCcccccccc------cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCCc
Q 029215           54 VNLGLWDTAGQEDYNRLR------PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK  126 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~  126 (197)
                      ..+.++||+|........      ...+..+|.+++|+|++.....-   . ....+.   +..++ -+|.||.|.... 
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av---~-~a~~F~---~~l~i~gvIlTKlD~~a~-  247 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK---N-QAKAFH---EAVGIGGIIITKLDGTAK-  247 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHH---H-HHHHHH---hcCCCCEEEEecccCCCc-
Confidence            477899999965432110      01133578899999987753211   1 112222   12333 577899997543 


Q ss_pred             ccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215          127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                                   .-.+..++...+. |+..+
T Consensus       248 -------------~G~~ls~~~~~~~-Pi~fi  265 (437)
T PRK00771        248 -------------GGGALSAVAETGA-PIKFI  265 (437)
T ss_pred             -------------ccHHHHHHHHHCc-CEEEE
Confidence                         2345566666665 54443

>PRK10867 signal recognition particle protein; Provisional

Probab=97.97  E-value=0.00011  Score=58.43  Aligned_cols=85  Identities=18%  Similarity=0.142  Sum_probs=46.7

Q ss_pred             EEEEEEEEcCCccccccc-cc---C--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRL-RP---L--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~-~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~  125 (197)
                      .+.+.|+||+|....... ..   .  ..-.++.+++|+|+...+...+....+..       ..+ .-+|.||.|....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~-------~~~i~giIlTKlD~~~r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNE-------ALGLTGVILTKLDGDAR  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHh-------hCCCCEEEEeCccCccc
Confidence            367889999995432111 00   0  11246778999998765332222132222       122 3577799997432


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      .              ..+...+...+. |+..++
T Consensus       256 g--------------G~alsi~~~~~~-PI~fig  274 (433)
T PRK10867        256 G--------------GAALSIRAVTGK-PIKFIG  274 (433)
T ss_pred             c--------------cHHHHHHHHHCc-CEEEEe
Confidence            2              235666677776 554443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.94  E-value=5.6e-05  Score=51.37  Aligned_cols=58  Identities=16%  Similarity=0.074  Sum_probs=35.8

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (197)
                      .+.+.|+||+|...  .. ..++..+|-++++...+-.+...-.  +. ..+     ...=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~--~~-~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~-----~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ--SE-VDIASMADTTVVVMAPGAGDDIQAI--KA-GIM-----EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh--hh-hhHHHhCCEEEEEECCCchhHHHHh--hh-hHh-----hhcCEEEEeCCC
Confidence            46788999998542  22 2367789999999887733332222  11 111     223488889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=2.7e-05  Score=68.09  Aligned_cols=114  Identities=23%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC-CCCCCCCCce-eeceeEEEE--ECCeEEEEEEEEcCCcccc--------cccccC---
Q 029215            9 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPTV-FDNFSANVV--VDGSTVNLGLWDTAGQEDY--------NRLRPL---   73 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~-~~~~~~~~t~-~~~~~~~~~--~~~~~~~l~i~D~~G~~~~--------~~~~~~---   73 (197)
                      -+|+|++|+||||++..--.+ .+........ ...-+..+.  +.+   .-.++||.|-..-        ...|..   
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            479999999999999432211 1111111100 000011111  112   3458899983211        122322   


Q ss_pred             ------CCCCCcEEEEEEeCCCHh----HHH-HHHHHHHH---HHhhhC-CCCCEEEEeecCCccCC
Q 029215           74 ------SYRGADVFILAFSLISKA----SYE-NVAKKWIP---ELRHYA-PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        74 ------~~~~~~~~i~v~d~~~~~----s~~-~~~~~~~~---~~~~~~-~~~p~iiv~nK~D~~~~  125 (197)
                            ..+-.+++|+.+|+++.-    ... .....+..   .+.+.. ...||.+++||.|+.+.
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                  235689999999986631    111 11122323   333333 58999999999999764

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.84  E-value=2.4e-05  Score=62.03  Aligned_cols=56  Identities=18%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      .+.|.+||.|+|||||+||.|.+.+... ...|...-.+. .+.+..   .+.+.|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ-Ti~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ-TIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE-EEEcCC---CceecCCCCcc
Confidence            5899999999999999999999876522 11111111122 222222   34589999963

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=3.4e-05  Score=61.17  Aligned_cols=117  Identities=16%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC------------CCCC-----CCC-ce-eeceeEEEE------------ECC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT------------FPTD-----YVP-TV-FDNFSANVV------------VDG   51 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~~-----~~~-t~-~~~~~~~~~------------~~~   51 (197)
                      .++.-++-|+....-|||||-..|....            |.+.     ... |+ .+-++..+.            -++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            3456678899999999999999887532            1110     000 00 011111111            123


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      ..+.++++|.||+-+|++.....++--|+.++|+|.-++-..+.- .-+.+.+.+.   +.-+++.||.|..
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA  163 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA  163 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence            468899999999999999998899999999999999887665554 4444555544   3335677999963

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.81  E-value=0.00014  Score=51.06  Aligned_cols=67  Identities=19%  Similarity=0.163  Sum_probs=38.4

Q ss_pred             EEEEEEEcCCccccccc--ccCC---CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           54 VNLGLWDTAGQEDYNRL--RPLS---YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ....+++++|...-..+  ....   .-..+.++.|+|+.+-.........+...+...     =++++||+|+.+.
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~  156 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSD  156 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCCh
Confidence            45567888885433333  0000   113588999999977544444434445555433     3889999999654

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=9.7e-05  Score=59.69  Aligned_cols=85  Identities=18%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             EEEEEEEEcCCccccccc-------ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRL-------RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+.+.|+||+|.......       .....  ....++|++.+..  ..++ ...+..+..   ..+.-+|+||.|... 
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~--~~a~lLVLpAtss--~~Dl-~eii~~f~~---~~~~gvILTKlDEt~-  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR--QVTSLLVLPANAH--FSDL-DEVVRRFAH---AKPQGVVLTKLDETG-  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhh--cCCcEEEEECCCC--hhHH-HHHHHHHHh---hCCeEEEEecCcCcc-
Confidence            467889999996432211       01111  1235667776642  2233 223333322   246679999999844 


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                                   ....+..+....+. |+..++.
T Consensus       499 -------------~lG~aLsv~~~~~L-PI~yvt~  519 (559)
T PRK12727        499 -------------RFGSALSVVVDHQM-PITWVTD  519 (559)
T ss_pred             -------------chhHHHHHHHHhCC-CEEEEeC
Confidence                         33566677777776 6655543

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.0002  Score=56.63  Aligned_cols=84  Identities=13%  Similarity=0.036  Sum_probs=46.1

Q ss_pred             EEEEEEEcCCccccccc----ccC--CCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215           54 VNLGLWDTAGQEDYNRL----RPL--SYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~----~~~--~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  126 (197)
                      ..+.++||+|.......    ...  .....+-.++|+|++.. ....+.    ...+..   --+-=+|+||.|.... 
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~----~~~f~~---~~~~~~I~TKlDEt~~-  341 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV----ISAYQG---HGIHGCIITKVDEAAS-  341 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH----HHHhcC---CCCCEEEEEeeeCCCC-
Confidence            46679999996532211    011  11234567888898843 333332    222221   1233678899998653 


Q ss_pred             ccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                                   ...+..++...+. |+..++
T Consensus       342 -------------~G~~l~~~~~~~l-Pi~yvt  360 (420)
T PRK14721        342 -------------LGIALDAVIRRKL-VLHYVT  360 (420)
T ss_pred             -------------ccHHHHHHHHhCC-CEEEEE
Confidence                         3455667777776 555543

>PRK13695 putative NTPase; Provisional

Probab=97.79  E-value=0.0015  Score=45.53  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++.|++|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.78  E-value=0.0003  Score=49.01  Aligned_cols=67  Identities=16%  Similarity=0.094  Sum_probs=37.5

Q ss_pred             EEEEEEEEcCCccccccc----ccCC--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRL----RPLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+.+.++|++|...+...    ....  ....+.+++|+|........    .+...+.+.. + ..-+|.||.|....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~-~-~~~viltk~D~~~~  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEAL-G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhC-C-CCEEEEECCcCCCC
Confidence            356778999997422111    0111  12489999999987553322    2222322222 2 35677799998654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00959 ffh signal recognition particle protein

Probab=97.77  E-value=0.00046  Score=54.87  Aligned_cols=87  Identities=17%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             EEEEEEEEcCCccccccc-cc-----CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215           53 TVNLGLWDTAGQEDYNRL-RP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  126 (197)
                      .+.+.|+||+|....... ..     ...-.++.+++|+|++..+....    +...+.... + ..=+|.||.|.... 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~----~a~~f~~~v-~-i~giIlTKlD~~~~-  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVN----TAKTFNERL-G-LTGVVLTKLDGDAR-  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHH----HHHHHHhhC-C-CCEEEEeCccCccc-
Confidence            367889999995432211 00     01224788899999876532222    222222221 1 23577899996432 


Q ss_pred             ccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                                   ...+...+...+. |+..++.
T Consensus       255 -------------~G~~lsi~~~~~~-PI~fi~~  274 (428)
T TIGR00959       255 -------------GGAALSVRSVTGK-PIKFIGV  274 (428)
T ss_pred             -------------ccHHHHHHHHHCc-CEEEEeC
Confidence                         2246677777776 6554433

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.00013  Score=56.94  Aligned_cols=85  Identities=18%  Similarity=0.114  Sum_probs=47.4

Q ss_pred             EEEEEEEcCCccccccc----ccCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           54 VNLGLWDTAGQEDYNRL----RPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                      +.+.|+||+|.......    ....+  ...+.+++|+|++...  .++ ..+...+...   -.-=+|+||.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~-~~i~~~F~~~---~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDM-IEIITNFKDI---HIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHH-HHHHHHhcCC---CCCEEEEEcccCCCC--
Confidence            67889999996432211    11111  2356788899986432  122 2222333321   223678899998653  


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                                  ...+..++...+. |+..++
T Consensus       393 ------------~G~iLni~~~~~l-PIsyit  411 (436)
T PRK11889        393 ------------SGELLKIPAVSSA-PIVLMT  411 (436)
T ss_pred             ------------ccHHHHHHHHHCc-CEEEEe
Confidence                        3456677777777 555443

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.65  E-value=5.8e-05  Score=58.12  Aligned_cols=58  Identities=24%  Similarity=0.286  Sum_probs=37.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      ++.+++.|+|.|++||||+||+|....... ...++. +.....+..+   -.+.|.|.||.-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ld---k~i~llDsPgiv  308 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLD---KKIRLLDSPGIV  308 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheecc---CCceeccCCcee
Confidence            467999999999999999999999876521 111111 1111222222   245699999953

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.64  E-value=0.00049  Score=53.62  Aligned_cols=84  Identities=24%  Similarity=0.173  Sum_probs=46.0

Q ss_pred             EEEEEEEEcCCcccccccc----cCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRLR----PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~  125 (197)
                      .+.+.++||.|...++...    ..++.  ...-+.+|++++...  .++ ...+..++    .+|+ -+++||.|... 
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl-kei~~~f~----~~~i~~~I~TKlDET~-  352 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL-KEIIKQFS----LFPIDGLIFTKLDETT-  352 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH-HHHHHHhc----cCCcceeEEEcccccC-
Confidence            5678899999976554321    11111  223455677776542  233 33333333    3444 47779999764 


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                                   +......+....+. |+-.+
T Consensus       353 -------------s~G~~~s~~~e~~~-PV~Yv  371 (407)
T COG1419         353 -------------SLGNLFSLMYETRL-PVSYV  371 (407)
T ss_pred             -------------chhHHHHHHHHhCC-CeEEE
Confidence                         34455566666665 54444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.61  E-value=5.4e-05  Score=49.42  Aligned_cols=22  Identities=14%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998763

...

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.61  E-value=0.00014  Score=54.44  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC-------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ...++++|+|-||+|||||+|.+.....       .+.+++.+ ..+...+.+... -.+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT-~~V~~~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVT-RRVSERIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCce-eeehhheEeccC-CceEEecCCCc
Confidence            3578999999999999999987764321       12222222 122222333332 23678999994

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00019  Score=55.53  Aligned_cols=162  Identities=15%  Similarity=0.090  Sum_probs=89.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCCC------------------------CCCCce------eeceeEEEEECC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV------FDNFSANVVVDG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~------------------------~~~~t~------~~~~~~~~~~~~   51 (197)
                      ..++++.++|....||||+-..++..  ....                        +.....      ...-...+... 
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte-  155 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE-  155 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-
Confidence            56799999999999999998554421  0000                        000000      00001112222 


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---HHHHH-HHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YENVA-KKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                       .-++.+.|.||+..|-..+..-..+||..++|+++--.+.   |+.-- ..=...+.....-...++++||+|-...+.
T Consensus       156 -~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  156 -NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             -ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence             2456799999998887776667778999999998743221   11100 000112222222456788899999765432


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCCHHHHHH
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  171 (197)
                         +.. ......+....+.+..|.     ..++++|..+|.++++..+
T Consensus       235 ---s~e-Ry~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 ---SNE-RYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             ---chh-hHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence               000 000122334445454332     3578999999999887654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.60  E-value=0.00028  Score=47.40  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=59.0

Q ss_pred             EEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC
Q 029215           10 VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        10 ~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (197)
                      +.-|..|+|||++.-.+-..-.... ..+..  ...........+.+.++|+|+...  ......+..+|.++++.+.+ 
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~--vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLG-KRVLL--LDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEE--EECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence            4567889999999854432110000 00000  000000001116778999987532  22335677899999999876 


Q ss_pred             HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           90 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      ..++... ...++.+.......++.+|+|+.+..
T Consensus        78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            4444444 34444444433456788999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.60  E-value=0.0021  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      =.+|.|.-|+|||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3567899999999999999854

>PRK08118 topology modulation protein; Reviewed

Probab=97.59  E-value=6.5e-05  Score=52.14  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +|+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999888753

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.57  E-value=0.00063  Score=52.99  Aligned_cols=85  Identities=18%  Similarity=0.090  Sum_probs=46.3

Q ss_pred             EEEEEEEcCCcccccccc----cCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCc
Q 029215           54 VNLGLWDTAGQEDYNRLR----PLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDK  126 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~  126 (197)
                      +.+.++||+|........    ..+.  -..+.+++|.+++..  ..++ ..+...+.    .. +--+|+||.|.... 
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~-~~i~~~f~----~l~i~glI~TKLDET~~-  357 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADV-MTILPKLA----EIPIDGFIITKMDETTR-  357 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHH-HHHHHhcC----cCCCCEEEEEcccCCCC-
Confidence            678899999974332211    1111  134666777776322  2222 22222222    22 33677899998643 


Q ss_pred             ccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                                   ...+..++...+. |+..++.
T Consensus       358 -------------~G~~Lsv~~~tgl-PIsylt~  377 (407)
T PRK12726        358 -------------IGDLYTVMQETNL-PVLYMTD  377 (407)
T ss_pred             -------------ccHHHHHHHHHCC-CEEEEec
Confidence                         3466677777777 6555543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.55  E-value=9.9e-05  Score=41.95  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+|.|+.|+|||||++.+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999988764

>TIGR00235 udk uridine kinase

Probab=97.55  E-value=0.00011  Score=52.82  Aligned_cols=28  Identities=21%  Similarity=0.121  Sum_probs=25.0

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |.++...-|+|+|++|||||||++.+..
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            6677888999999999999999998875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.53  E-value=8.4e-05  Score=52.05  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +|+|+|+||+||||+..+|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999875

>PRK07261 topology modulation protein; Provisional

Probab=97.53  E-value=7.9e-05  Score=51.92  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|+|++|+|||||...+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.00069  Score=57.27  Aligned_cols=88  Identities=19%  Similarity=0.030  Sum_probs=47.5

Q ss_pred             EEEEEEEEcCCccccccc----cc--CCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRL----RP--LSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~----~~--~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+.+.|+||+|.......    ..  ......+-.++|+|++.. +.+.++    ...+.....--+-=+|+||.|....
T Consensus       263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i----~~~f~~~~~~~i~glIlTKLDEt~~  338 (767)
T PRK14723        263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV----VHAYRHGAGEDVDGCIITKLDEATH  338 (767)
T ss_pred             CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH----HHHHhhcccCCCCEEEEeccCCCCC
Confidence            356789999994322110    00  112345678899998753 333333    2222221100134678899998653


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                                    .-.+..+....+. |+..++
T Consensus       339 --------------~G~iL~i~~~~~l-PI~yit  357 (767)
T PRK14723        339 --------------LGPALDTVIRHRL-PVHYVS  357 (767)
T ss_pred             --------------ccHHHHHHHHHCC-CeEEEe
Confidence                          3355666677776 555543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.52  E-value=0.00081  Score=54.16  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             EEEEEEEcCCcccccc-------cccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           54 VNLGLWDTAGQEDYNR-------LRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +.+.++||+|......       ..... ....-.++|+|++... .+.+.       +..+...-..-+|+||.|....
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~-~~p~e~~LVLdAt~~~~~l~~i-------~~~f~~~~~~g~IlTKlDet~~  406 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGA-GAPVKRLLLLNATSHGDTLNEV-------VQAYRGPGLAGCILTKLDEAAS  406 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhcc-CCCCeeEEEEeCCCcHHHHHHH-------HHHhccCCCCEEEEeCCCCccc
Confidence            4567999999432221       11111 1123367888987542 22222       2222212334577899997543


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH-HHHH----HHHHHHHcC
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV-KAVF----DAAIKVVLQ  179 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~----~~i~~~~~~  179 (197)
                                    ...+..+....+. |+..++  +|.+| +++.    +.+++.++.
T Consensus       407 --------------~G~~l~i~~~~~l-PI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        407 --------------LGGALDVVIRYKL-PLHYVS--NGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             --------------chHHHHHHHHHCC-CeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence                          3466777777887 655553  34455 3332    445555544

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.50  E-value=0.0054  Score=47.09  Aligned_cols=77  Identities=17%  Similarity=0.094  Sum_probs=42.9

Q ss_pred             CCcEEEEEEeCCCHhHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCe
Q 029215           77 GADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPA  154 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (197)
                      ..|+++-|+|+..-..... .......++.     ..=+|++||.|+....            ..+..+...+.+ ...+
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~  178 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDLVDAE------------ELEALEARLRKLNPRAR  178 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccCCCHH------------HHHHHHHHHHHhCCCCe
Confidence            3688999999976543222 2133333333     2348999999997643            133334444443 4446


Q ss_pred             EEEeccCCCCCHHHHHH
Q 029215          155 YIECSSKTQQNVKAVFD  171 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~  171 (197)
                      ++.+|. .+.+..+++.
T Consensus       179 i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         179 IIETSY-GDVDLAELLD  194 (323)
T ss_pred             EEEccc-cCCCHHHhhc
Confidence            777666 3344444443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.49  E-value=0.00057  Score=45.56  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=21.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .-.+++.|++|+|||+|++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999999887654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.49  E-value=8.3e-05  Score=49.99  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |+++|+||||||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.47  E-value=0.0001  Score=52.49  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=26.3

Q ss_pred             HHHHHHHHhCCCe---EE--EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          142 QGEELRKLIGSPA---YI--ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       142 ~~~~~~~~~~~~~---~~--~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +...+|+.+-..|   .|  +|||.+.+-+.++++.+.+.+...
T Consensus       143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            3334555544333   23  499999999999999988877543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.43  E-value=0.00018  Score=51.76  Aligned_cols=28  Identities=18%  Similarity=0.132  Sum_probs=23.9

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ...+.+.|+|.|++|||||||++.|...
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999888753

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.43  E-value=0.00065  Score=50.73  Aligned_cols=85  Identities=18%  Similarity=0.066  Sum_probs=47.8

Q ss_pred             EEEEEEEEcCCccccccc----ccCC--CCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRL----RPLS--YRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+.+.++||+|.......    +...  ....+-+++|+|++.. +...    .+...+..   --+--++.||.|....
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~----~~~~~f~~---~~~~~~I~TKlDet~~  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI----EIITNFKD---IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH----HHHHHhCC---CCCCEEEEEeecCCCC
Confidence            367889999997533211    1111  1245678999998643 2222    22222222   1233678899998653


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                                    ...+..++...+. |+..++
T Consensus       227 --------------~G~~l~~~~~~~~-Pi~~it  245 (270)
T PRK06731        227 --------------SGELLKIPAVSSA-PIVLMT  245 (270)
T ss_pred             --------------ccHHHHHHHHHCc-CEEEEe
Confidence                          2355666677776 555443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.42  E-value=0.00031  Score=48.75  Aligned_cols=52  Identities=19%  Similarity=0.210  Sum_probs=30.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT   61 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~   61 (197)
                      ||++-|++|+|||||+.++...--..  .-...-.+...+..++..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence            68999999999999998887532100  11122233334444555566666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.41  E-value=0.0002  Score=49.78  Aligned_cols=29  Identities=17%  Similarity=0.132  Sum_probs=24.1

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      |......-+.|+|++|||||||++++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            55556667899999999999999998764

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.41  E-value=0.0013  Score=40.63  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-ccCCCCCCcEEEEEEeC
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL   87 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~   87 (197)
                      +++.|..|+||||+...+...-....+.         ....+    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            6788999999999997665422111110         01111    5669999986533221 13445678999999887


Q ss_pred             CCH
Q 029215           88 ISK   90 (197)
Q Consensus        88 ~~~   90 (197)
                      +..
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            654

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.40  E-value=0.00019  Score=42.01  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999988764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.40  E-value=0.00044  Score=48.19  Aligned_cols=44  Identities=16%  Similarity=0.134  Sum_probs=28.5

Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           79 DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      |++++|+|+.++.+...  ..+...+.....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence            78999999988633221  233333211112689999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.37  E-value=0.00012  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.36  E-value=0.0027  Score=50.67  Aligned_cols=86  Identities=17%  Similarity=0.065  Sum_probs=47.7

Q ss_pred             EEEEEEEEcCCcccccc----cccCCCC---CCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           53 TVNLGLWDTAGQEDYNR----LRPLSYR---GADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~----~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      .+.+.++||+|......    .....+.   ...-+.+|++++-. ..+..+    ...+...  + +--++.||.|...
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~----~~~f~~~--~-~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI----YKHFSRL--P-LDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH----HHHhCCC--C-CCEEEEecccccc
Confidence            36788999999643321    1111111   33466777888644 222222    2233221  1 2368899999854


Q ss_pred             CcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      .              ...+..+....+. |+..++.
T Consensus       372 ~--------------~G~i~~~~~~~~l-Pv~yit~  392 (424)
T PRK05703        372 S--------------LGSILSLLIESGL-PISYLTN  392 (424)
T ss_pred             c--------------ccHHHHHHHHHCC-CEEEEeC
Confidence            3              3356777777887 6555543

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.35  E-value=0.0053  Score=47.62  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+|.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            577899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.34  E-value=0.00024  Score=50.16  Aligned_cols=24  Identities=8%  Similarity=0.044  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ..=|+|+|++|||||||+++|...
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            345899999999999999999864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.33  E-value=0.00018  Score=51.96  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++|+|++|||||||++-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999998754

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.33  E-value=0.0032  Score=45.58  Aligned_cols=92  Identities=20%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             eeEEEEECCCC---Cc----HHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEc-CCcccccccccCCCCC
Q 029215            6 FIKCVTVGDGA---VG----KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT-AGQEDYNRLRPLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~---~G----Kstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~-~G~~~~~~~~~~~~~~   77 (197)
                      .++++++|.+.   .|    =+.|+++++.+-...                 .  +.+.+.|| +|.+.|.   +...+.
T Consensus        98 ~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~-----------------~--~e~VivDtEAGiEHfg---Rg~~~~  155 (255)
T COG3640          98 DIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILN-----------------R--YEVVIVDTEAGIEHFG---RGTIEG  155 (255)
T ss_pred             CccEEEeccccCCCCcccchHHHHHHHHHHHHhcc-----------------c--CcEEEEecccchhhhc---cccccC
Confidence            48999999875   22    345555555543211                 1  34568998 6776554   466788


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCC-CCEEEEeecCCcc
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR  123 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~  123 (197)
                      +|.+|.|+|.+- .++... ....+...+.  + .++.+|+||.|..
T Consensus       156 vD~vivVvDpS~-~sl~ta-eri~~L~~el--g~k~i~~V~NKv~e~  198 (255)
T COG3640         156 VDLVIVVVDPSY-KSLRTA-ERIKELAEEL--GIKRIFVVLNKVDEE  198 (255)
T ss_pred             CCEEEEEeCCcH-HHHHHH-HHHHHHHHHh--CCceEEEEEeeccch
Confidence            999999999874 455554 4444444444  5 8899999999964

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.32  E-value=0.0019  Score=50.78  Aligned_cols=91  Identities=22%  Similarity=0.126  Sum_probs=50.3

Q ss_pred             EEEEEEEEcCCccccccc----ccCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           53 TVNLGLWDTAGQEDYNRL----RPLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~----~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+.+.++||+|.......    ....+.   ...-.++|.|++...  .++ .   ..+..+..--+-=+|+||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~-~---~~~~~~~~~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDV-K---EIFHQFSPFSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHH-H---HHHHHhcCCCCCEEEEEeccCCCc
Confidence            467889999996532211    111111   123578899998762  222 2   233333211244688899998643


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV  166 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (197)
                                    ...+..++...+. |+..++  +|.++
T Consensus       328 --------------~G~~l~~~~~~~~-Pi~yit--~Gq~v  351 (388)
T PRK12723        328 --------------VGNLISLIYEMRK-EVSYVT--DGQIV  351 (388)
T ss_pred             --------------chHHHHHHHHHCC-CEEEEe--CCCCC
Confidence                          3456677777776 554443  34444

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.30  E-value=0.00024  Score=51.91  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ..++++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999999999999887754

This is thought to be an ATPase involved in viral DNA packaging [].

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.26  E-value=0.00025  Score=47.30  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            5899999999999999988664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14530 adenylate kinase; Provisional

Probab=97.25  E-value=0.00032  Score=50.74  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988853

>PRK06217 hypothetical protein; Validated

Probab=97.25  E-value=0.00028  Score=49.74  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+|+|+|.+|||||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988754

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.25  E-value=0.00031  Score=46.35  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999988764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14527 adenylate kinase; Provisional

Probab=97.23  E-value=0.00036  Score=49.48  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=23.8

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |+.+....|+++|+|||||||+...+..
T Consensus         1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5566677899999999999999988863

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.22  E-value=0.0005  Score=49.42  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +..-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4566889999999999999999753

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.21  E-value=0.00017  Score=55.77  Aligned_cols=59  Identities=15%  Similarity=0.080  Sum_probs=0.0

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (197)
                      +.++.+.|.++|.|++||||+||.|-......-.+-..++.+=..++.-.   ++.++|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHh---ceeEecCCC

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.20  E-value=0.0004  Score=50.66  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -....+|+|+|+|||||||+...|..
T Consensus         3 ~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          3 LKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999988864

>PRK01889 GTPase RsgA; Reviewed

Probab=97.20  E-value=0.0004  Score=54.09  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            368999999999999999998643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.19  E-value=0.0004  Score=45.93  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~   31 (197)
                      -.++++|++|+||||++..+.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.18  E-value=0.00037  Score=46.68  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.18  E-value=0.00034  Score=50.91  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +.++|++|||||||++-+-+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999987764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.18  E-value=0.00032  Score=46.09  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888654

...

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.001  Score=47.46  Aligned_cols=41  Identities=17%  Similarity=0.240  Sum_probs=26.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST   53 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   53 (197)
                      -.+++||+|||||||++.+-.-.  +..+   ..++...+.+++.+
T Consensus        35 VTAlIGPSGcGKST~LR~lNRmn--dl~~---~~r~~G~v~~~g~n   75 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNRMN--DLIP---GARVEGEVLLDGKN   75 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHhhc--ccCc---CceEEEEEEECCee
Confidence            35799999999999998875422  1111   23445555566643

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.15  E-value=0.00041  Score=48.98  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999653

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.14  E-value=0.00034  Score=48.67  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -.=+++.||+|+|||||+++|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3457899999999999999998754

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.14  E-value=0.001  Score=50.50  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             eEEEEEEEEcCCcccccc------------cccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEee
Q 029215           52 STVNLGLWDTAGQEDYNR------------LRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGT  118 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~n  118 (197)
                      +.+.+.++||+|--....            ..+..-..++-++++.|++-++ .+.+. +.+.+.+.      ---+++|
T Consensus       220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~------l~GiIlT  292 (340)
T COG0552         220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVG------LDGIILT  292 (340)
T ss_pred             cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcC------CceEEEE
Confidence            357888999999432211            1122222356688888997764 44544 54444332      1257789


Q ss_pred             cCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHH
Q 029215          119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAV  169 (197)
Q Consensus       119 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  169 (197)
                      |.|-....              -.+..++...+. |+..+-  .|++++++
T Consensus       293 KlDgtAKG--------------G~il~I~~~l~~-PI~fiG--vGE~~~DL  326 (340)
T COG0552         293 KLDGTAKG--------------GIILSIAYELGI-PIKFIG--VGEGYDDL  326 (340)
T ss_pred             ecccCCCc--------------ceeeeHHHHhCC-CEEEEe--CCCChhhc
Confidence            99954322              233466677887 665542  34555554

>PRK03839 putative kinase; Provisional

Probab=97.13  E-value=0.00044  Score=48.53  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +|+++|.|||||||+..++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888653

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.13  E-value=0.00045  Score=46.46  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .|+|+|+.++|||||+..|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888753

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.12  E-value=0.00044  Score=48.42  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.12  E-value=0.00046  Score=43.91  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHh
Q 029215            7 IKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~   27 (197)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.11  E-value=0.0031  Score=44.16  Aligned_cols=85  Identities=21%  Similarity=0.277  Sum_probs=57.3

Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  131 (197)
                      ..+.+.++|+|+....  .....+..+|.+++++..+.. +.... ..+.+.+...  +.|+.+|+|++|....      
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------  158 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------  158 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence            4578889999965321  223456789999999987743 45555 5555666655  6788999999997432      


Q ss_pred             CCCCccccHHHHHHHHHHhCCCeEE
Q 029215          132 HPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                             ...+++++.+..+. +++
T Consensus       159 -------~~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         159 -------IAEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             -------hHHHHHHHHHHcCC-CeE
Confidence                   23456677777776 554

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.09  E-value=0.00045  Score=48.68  Aligned_cols=22  Identities=18%  Similarity=0.075  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.09  E-value=0.00049  Score=49.07  Aligned_cols=21  Identities=19%  Similarity=0.177  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988663

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.08  E-value=0.0026  Score=40.23  Aligned_cols=82  Identities=13%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             EEEEC-CCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         9 i~v~G-~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      |.+.| ..|+||||+...+...-.. ...++.      .+..+ ..+.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            55666 5689999998655432110 101111      11111 11677899999864322  22556678999999886


Q ss_pred             CCHhHHHHHHHHHHH
Q 029215           88 ISKASYENVAKKWIP  102 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~  102 (197)
                      + ..++... ..+++
T Consensus        72 ~-~~s~~~~-~~~~~   84 (104)
T cd02042          72 S-PLDLDGL-EKLLE   84 (104)
T ss_pred             C-HHHHHHH-HHHHH
Confidence            5 4455555 44443

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.08  E-value=0.00047  Score=50.84  Aligned_cols=20  Identities=20%  Similarity=0.331  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      ++++||.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999998876

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.05  E-value=0.0025  Score=50.07  Aligned_cols=113  Identities=20%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHH----hhCCC------CCCCCCcee-------eceeEEE-EE----------------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISY----TSNTF------PTDYVPTVF-------DNFSANV-VV----------------   49 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l----~~~~~------~~~~~~t~~-------~~~~~~~-~~----------------   49 (197)
                      .++..|+++|-.|+||||.+-.|    .....      .+.|.|...       ......+ ..                
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            45688999999999999988433    32211      222333210       0000000 00                


Q ss_pred             -CCeEEEEEEEEcCCcccccc-cc-----cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029215           50 -DGSTVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD  121 (197)
Q Consensus        50 -~~~~~~l~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D  121 (197)
                       ....+.+.|+||+|-..... +.     -...-++|=+++|+|+.-++.-......+.+.+       ++ =+|++|.|
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l-------~itGvIlTKlD  250 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL-------GITGVILTKLD  250 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc-------CCceEEEEccc
Confidence             11235778999999543321 11     112346889999999987765444435554433       22 35556666


Q ss_pred             cc
Q 029215          122 LR  123 (197)
Q Consensus       122 ~~  123 (197)
                      -.
T Consensus       251 Gd  252 (451)
T COG0541         251 GD  252 (451)
T ss_pred             CC
Confidence            53

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.05  E-value=0.00061  Score=47.65  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHh
Q 029215            7 IKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~   27 (197)
                      -.++|+|++|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14532 adenylate kinase; Provisional

Probab=97.04  E-value=0.00057  Score=48.29  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>PRK08233 hypothetical protein; Provisional

Probab=97.04  E-value=0.00073  Score=47.31  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+-|+|.|.+|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999998753

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.04  E-value=0.00057  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4799999999999999999763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.00037  Score=53.77  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             eEEEEEEEEcCCcccc-cccccC-----CCCCCcEEEEEEeCCCHhHHHHHHHHHHHH
Q 029215           52 STVNLGLWDTAGQEDY-NRLRPL-----SYRGADVFILAFSLISKASYENVAKKWIPE  103 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~-~~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~  103 (197)
                      ..+.+.|.||+|-..- .++...     -.-..|-+|||.|++-++.-......+.+.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            4688899999994321 111111     122579999999998776544443444333

>PRK13949 shikimate kinase; Provisional

Probab=97.03  E-value=0.00063  Score=47.30  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|+|++|+||||+...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987764

>PRK14531 adenylate kinase; Provisional

Probab=97.03  E-value=0.00064  Score=47.87  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+|+++|+|||||||+..++..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988854

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.02  E-value=0.00064  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN02200 adenylate kinase family protein

Probab=97.01  E-value=0.00084  Score=49.22  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+.|+|+|+|||||||+..+|..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988864

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.01  E-value=0.0021  Score=42.66  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999988865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.99  E-value=0.00062  Score=49.42  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |+|.|++|||||||++.|..
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            68999999999999988875

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.99  E-value=0.00069  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            6889999999999999988764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.98  E-value=0.00071  Score=47.52  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |+++|+|||||||+..+|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988865

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.97  E-value=0.0008  Score=47.52  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.++++|++|+|||||++.+.+-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999988764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.97  E-value=0.00066  Score=48.09  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +|+|+|+|||||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02674 adenylate kinase

Probab=96.95  E-value=0.00085  Score=49.31  Aligned_cols=25  Identities=12%  Similarity=0.044  Sum_probs=21.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....+|+++|+|||||+|+..+|..
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHH
Confidence            3468899999999999999988865

>TIGR01351 adk adenylate kinases

Probab=96.95  E-value=0.00066  Score=48.93  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.00062  Score=45.65  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            3457999999999999999998864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.95  E-value=0.00081  Score=48.65  Aligned_cols=22  Identities=23%  Similarity=0.225  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            5789999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.93  E-value=0.00083  Score=47.96  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|+|++||||||+++.+...
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.93  E-value=0.0011  Score=50.12  Aligned_cols=24  Identities=21%  Similarity=0.043  Sum_probs=20.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~   27 (197)
                      ..++-|+|.|++|||||||++.+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~   83 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQ   83 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999997664

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.93  E-value=0.00091  Score=47.08  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+++|+|+|||||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.91  E-value=0.0012  Score=48.32  Aligned_cols=26  Identities=15%  Similarity=0.066  Sum_probs=22.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+.+-++|.|++|+|||||++.+...
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45788999999999999999988753

>PRK00625 shikimate kinase; Provisional

Probab=96.91  E-value=0.00093  Score=46.61  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+++|.+||||||+.+.+-.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988854

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.90  E-value=0.00096  Score=47.23  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999988764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.90  E-value=0.00079  Score=51.65  Aligned_cols=20  Identities=25%  Similarity=0.415  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      ++++||+|||||||++.+-+
T Consensus        32 ~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999988865

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.90  E-value=0.00089  Score=47.96  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      --|+|+|++|||||||++.+...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999988764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.90  E-value=0.00096  Score=48.03  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.89  E-value=0.00096  Score=48.22  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-100
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-97
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		8e-93
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-84
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		8e-64
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-63
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-63
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-63
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-63
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		4e-63
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-63
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-63
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-63
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-62
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-62
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-62
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-62
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-62
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-62
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-62
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-62
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-62
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-62
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-62
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-62
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-62
1mh1_A	186	Small G-Protein Length = 186		5e-62
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-62
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-62
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-62
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		8e-62
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-61
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-60
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-53
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-53
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		5e-53
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		7e-53
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		8e-53
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		8e-53
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		8e-53
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		8e-53
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		9e-53
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		9e-53
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-52
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-52
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-52
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-52
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-52
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-52
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-52
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-52
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-52
2kb0_A	178	Cdc42(T35a) Length = 178		4e-52
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-52
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		9e-52
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		9e-52
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		9e-52
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-50
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-47
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-47
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-47
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-47
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-47
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-47
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-47
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		7e-47
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		7e-47
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		8e-47
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		8e-47
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		9e-47
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		9e-47
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-46
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-46
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-46
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-46
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-46
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-46
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-45
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-42
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		9e-39
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-38
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-31
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-31
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-31
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-27
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-27
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-21
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-21
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-21
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-20
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-20
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-20
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-20
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-20
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-20
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-20
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-20
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-20
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-20
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		7e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		7e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-20
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-20
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		8e-20
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		9e-20
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		9e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-19
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-19
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-19
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-19
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-19
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		7e-19
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		8e-19
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-18
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-18
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-18
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-18
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-18
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-18
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-18
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-18
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		7e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		8e-18
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		9e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		9e-18
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-17
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-17
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-17
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-17
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-17
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-17
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-17
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-17
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-17
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-17
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-17
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-17
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-17
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-17
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		6e-17
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		6e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		6e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-17
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-17
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		8e-17
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		8e-17
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		9e-17
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		9e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-16
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-16
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-16
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-16
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		5e-16
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-16
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-16
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-15
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-15
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-15
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-15
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-15
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-15
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-15
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-15
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-15
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-15
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-15
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		9e-15
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-14
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-14
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-14
1byu_A	216	Canine Gdp-Ran Length = 216		7e-14
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		8e-14
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-13
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-13
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-13
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-13
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		6e-13
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-13
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-13
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-13
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		7e-13
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-13
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-13
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		9e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-12
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-12
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-12
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-12
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-12
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		6e-12
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		6e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-12
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		8e-12
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-10
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		7e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-09
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-09
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-09
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		7e-09
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		8e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-07
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		9e-07
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-06
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		3e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		2e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		6e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-04
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		6e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/178 (97%), Positives = 176/178 (98%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQFFIDHPGAVPITT QGEEL+KLIGSP YIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  352 bits (902), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 165/178 (92%), Positives = 176/178 (98%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQFFIDHPGAVPITT QGEEL+KLIG+PAYIECSSK+Q+NVK VFDAAI+VVL
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  335 bits (860), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 156/178 (87%), Positives = 167/178 (93%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYT NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQF  DHPGA  ITTAQGEELRK+IG+  Y+ECSSKTQQNVKAVFD AI+V L
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  306 bits (783), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 157/178 (88%), Gaps = 2/178 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDK +  DH     IT+ QGEELRK IG+ AYIECSSKTQQNVKAVFD AIKVVL
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  239 bits (610), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 138/193 (71%), Gaps = 6/193 (3%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXXXXXX 184
                +      PIT  QG  L K I S  Y+ECS+ TQ+ +K VFD AI+ VL      
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL----CP 179
Query: 185 XXXXXSHRACSIL 197
                  RACS+L
Sbjct: 180 QPTRQQKRACSLL 192

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  236 bits (603), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  236 bits (602), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 135/179 (75%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLD
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 133/173 (76%), Gaps = 2/173 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N  P +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + + IGS  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + + IGS  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + + IGS  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N F  +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  233 bits (595), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  233 bits (594), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  233 bits (593), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  233 bits (593), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S+ IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTA
Sbjct: 6   GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDL
Sbjct: 66  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
Query: 123 RDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           RDDK     +      PIT  QG  L K I S  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT  QG  L K I S  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 137/193 (70%), Gaps = 21/193 (10%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YNRLRPLSY--------------RG-----ADVFILAFSLISKASYENVAKKWIPELRHY 107
           Y+RLRPLSY              RG     ADVF++ FSL+S AS+ENV  KW PE+RH+
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165
            P  PIILVGTKLDLRDDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ 
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 166 VKAVFDAAIKVVL 178
           +K VFD AI+ VL
Sbjct: 186 LKTVFDEAIRAVL 198

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 130/180 (72%), Gaps = 2/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           +SA + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+D
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDD      +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           DY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 126 KQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +    ++     PI   QG++L K IG+  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S+ IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTA
Sbjct: 4   GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 123 RDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           RDD      +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  202 bits (515), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDD      +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDD      +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 125 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDD      +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 134 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 127/179 (70%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LRDD      +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 126 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVP VFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N  P++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +++LRPL Y   D+F+L FS++S +S++NV++KW+PE+R + P  PIILVGT+ DLR+D 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 QFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174
           +  I  D     P+     + L + I + +YIECS+ TQ+N+K VFDAAI
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 4   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 63  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 122
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           SA+   K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDT
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K D
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 2   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  182 bits (463), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  182 bits (463), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  182 bits (463), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  182 bits (463), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  +   FP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVPIILVG K+DLR+D Q
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 FF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
               +   G  P+T+ +G+ +   IG+  Y ECS+KT   V+ VF+AA +  L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  182 bits (462), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+ + +G ++   I +  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+ + +G ++   I +  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 121/192 (63%), Gaps = 7/192 (3%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLXXXXXXX 185
            +  +      P+ + +G ++   I +  Y+ECS+KT++ V+ VF+ A +  L       
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL-----QV 181
Query: 186 XXXXSHRACSIL 197
                 R C IL
Sbjct: 182 RKNKRRRGCPIL 193

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 2   MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDK--QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+  +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VPIILV  K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 128 FFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
              +       P+ T  G  +   I +  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+R RPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D+     +      P+  A+G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 120 DLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 127 -QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +  +      P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
           +DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DK     +   G  P+T  +G+E+ + +G+ AY+ECS++   NV AVF  A +V L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N++ KW PE++HY      +LVG K+D
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LR D        G+  +T  +G++L + +G  AYIE SS  +  +  VF+ ++  + 
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N++ KW PE++HY      +LVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           LR D        G+  +T  +G++L + +G  AYIE SS  +  +  VF+ ++  + 
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLRDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSS-KTQQNVKAVFDAA 173
           K DLR D    ++  +    P++  QG  + K IG+  YIECS+ +++ +V+ +F  A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLRDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSS-KTQQNVKAVFDAA 173
           K DLR D    ++  +    P++  QG  + K IG+  YIECS+ +++ +V+ +F  A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 3   ASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           +++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWD
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           T+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K 
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLRDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSS-KTQQNVKAVFDAA 173
           DLR D    ++  +    P++  QG  + K IG+  YIECS+ +++ +V+ +F  A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 FFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAVFDAAIKVVL 178
             ++  H    PI+  QG  + K +G+  Y+E S+ T ++++ ++F  A  + L
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 FFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAVFDAAIKVVL 178
             ++  H    PI+  QG  + K +G+  Y+E S+ T ++++ ++F  A  + L
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 FFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAVFDAAIKVVL 178
             ++  H    PI+  QG  + K +G+  Y+E S+ T ++++ ++F  A  + L
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V L +WDTA
Sbjct: 5   SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRGAD  +L FS+  + S+EN+   W  E  +YA        P +++G
Sbjct: 65  GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K+D ++D+Q          +TT + +      G   Y+E S+K   NV   F+ A++ V
Sbjct: 124 NKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
Query: 178 L 178
           L
Sbjct: 173 L 173

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +WDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K+D+ + +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 178 L 178
           L
Sbjct: 173 L 173

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +WDTA
Sbjct: 7   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 67  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K+D+ + +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 126 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 178 L 178
           L
Sbjct: 175 L 175

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V + +WDTA
Sbjct: 9   SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K D+++ +           ++T + +   K  G   Y E S+K   NV A F+ A++ +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 178 L 178
           L
Sbjct: 177 L 177

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 128 TKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 128 TKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 120 K--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y R+    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +    + ++IE S+    NV+  F
Sbjct: 124 --------HLRAVPTDEARAFAEK---NNLSFIETSALDSTNVEEAF 159

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+L FS+    S+   A  ++ I  ++     +P+++VG K DL + 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 KQFFIDHPGAVPITTA--QGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        VP+  A  + EE         Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 158

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+L FS+    S+   A  ++ I  ++     +P+++VG K DL + 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 KQFFIDHPGAVPITTA--QGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        VP+  A  + EE         Y+E S+KT+ NV  VF
Sbjct: 129 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 127 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    ++ TV  +F   V+ VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YR A   +L + + +KAS++N+ + W+ E+  YA   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            ++           +    GE+L K  G P ++E S+KT  NV   F A  K
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAK 170

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
            S  +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDT
Sbjct: 4   GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKL 120
           AGQE +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K 
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           D+               +T  QGE L K +G P +IE S+K   NV  +F    K++
Sbjct: 123 DME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLI 167

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R    +  Y+E S+KT+ NV  VF
Sbjct: 139 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R    +  Y+E S+KT+ NV  VF
Sbjct: 127 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + ++  TV L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S++NV K+WI E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             +           +T+ +G EL    G   +IE S+K   NV+  F
Sbjct: 128 SKR----------VVTSDEGRELADSHG-IKFIETSAKNAYNVEQAF 163

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +   ++IE S+    NV+A F
Sbjct: 139 --------HLRAVPTDEARAFAEKNGL---SFIETSALDSTNVEAAF 174

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R    +  Y+E S+KT+ NV  VF
Sbjct: 135 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 168

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +   ++IE S+    NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGL---SFIETSALDSTNVEAAF 183

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R    +  Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VSVEEAKN---RADQWNVNYVETSAKTRANVDKVF 158

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
           S    +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           TAGQE +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            D+               +T  QGE L K +G P +IE S+K   NV  +F    K++
Sbjct: 135 SDME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLI 180

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 15/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
                        +T  QGE L K +G P +IE S+K   NV  +F    K++
Sbjct: 122 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                       + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +GS+     V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          +   Q  EL    G P Y E S+ T QNV+   + 
Sbjct: 144 IVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAVET 192
Query: 173 AIKVVL 178
            + +++
Sbjct: 193 LLDLIM 198

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
                       +T  QGE L K +G P +IE S+K   NV  +F    K++
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLI 163

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                  P    + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                  P    + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
                       +T  QGE L K +G P +IE S+K   NV  +F    K++
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 127 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 162

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R    +  Y+E S+KT+ NV  VF
Sbjct: 127 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +   ++IE S+    NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGL---SFIETSALDSTNVEAAF 183

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIKVVL 178
            + +++
Sbjct: 179 LLDLIM 184

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
           D +
Sbjct: 127 DKR 129

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I LVG K DLR
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +   ++IE S+    NV+A F
Sbjct: 130 --------HLRAVPTDEARAFAEKNGL---SFIETSALDSTNVEAAF 165

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
           D +
Sbjct: 127 DKR 129

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I LVG K DLR
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 124 --------HLRAVPTDEARAFAEK---NGLSFIETSALDSTNVEAAF 159

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIKVVL 178
            + +++
Sbjct: 179 LLDLIM 184

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 DDK 126
           D +
Sbjct: 140 DKR 142

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +GD   GK+ +++ +  + F      T+   F S  + V+ +TV   +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ F + ++AS+E  AKKW+ EL+    P + + L G K DL D 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           ++            TA+  +         ++E S+KT  NVK +F
Sbjct: 133 RK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
           +  L P   R + V ++ + + +  S++  + KWI ++R      V I+LVG K DL D 
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q          IT  +GE+  K + S  +IE S+KT  NVK +F
Sbjct: 123 RQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLF 156

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K D+ D 
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q          ++  +GE+L  L     ++E S+K   NV+  F
Sbjct: 127 RQ----------VSKERGEKL-ALDYGIKFMETSAKANINVENAF 160

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIKVV 177
            + ++
Sbjct: 179 LLDLI 183

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123
           E +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K D+ 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           D +Q          ++  +GE+L  L     ++E S+K   NV+  F
Sbjct: 127 DKRQ----------VSKERGEKL-ALDYGIKFMETSAKANINVENAF 162

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIKVV 177
            + ++
Sbjct: 179 LLDLI 183

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+DL  +
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +           ++  + E   + +G+  Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 127 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 166

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+DL  +
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +           ++  + E   + +G+  Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+DL  +
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +           ++  + E   + +G+  Y   S+K  + ++ +F
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     ++LVG K D+ D
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+
Sbjct: 125 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +  + F TDY PT+ D+++   V+D     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
           + F+L FS+  + S+E + K     LR       P+IL+G K DL        DH   V 
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL--------DHQRQV- 128
Query: 138 ITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            T  +G++L + +    Y+E S+K + NV   F   ++V+
Sbjct: 129 -TQEEGQQLARQL-KVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71  RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
               YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E ++  W  ++      +P  LV  K+DL DD
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  L P  YR A   ++ + +    S+   A+ W+ EL   A   + I LVG K+D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDX-- 120
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                +   G   +   +GE+L +  G   + E S+KT +NV  VF
Sbjct: 121 -----LQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVF 160

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
           E +  +    YRG    I+ + + S  S+ NV K+W+ E+      V  ILVG K D  D
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND--D 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            ++  ++   A       G +L          E S+K   NV+ +F+   ++VL
Sbjct: 126 PERKVVETEDAYKFAGQMGIQL---------FETSAKENVNVEEMFNCITELVL 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 163

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 R--------AVEFQEAQAYADD---NSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123
           E +  +    YR A+  IL + +  + S+  +  +W+ E+  YA   V  +LVG K+DL 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF-DAAIKVV 177
           + ++  +    A   + AQ            Y+E S+K   NV+ +F D A +++
Sbjct: 145 ERRE--VSQQRAEEFSEAQ---------DMYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K DL   
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 124 R--------AVEFQEAQAYADD---NSLLFMETSAKTAMNVNEIFMAIAK 162

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   ++ +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   ++ +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K  + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P  YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  + E S+KT  NV  +F A  K
Sbjct: 127 KR--------AVDFQEAQSYADD---NSLLFXETSAKTSXNVNEIFXAIAK 166

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   ++ +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
           QE +  L P   R + V ++ + + +  S+   + KWI ++R      V I+LVG K DL
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            D +Q          ++T +GE   K + +  +IE S+K   NVK +F
Sbjct: 132 SDKRQ----------VSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 168

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG + DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +   + A++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 2   SASRF--IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 58
           SAS+    K V +G+ AVGK+ +++ +    F      T+   F + +V +D +TV   +
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVG 117
           WDTAGQE Y+ L P+ YRGA   I+ + + ++ ++   AK W+ EL R  +P + I L G
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAG 120
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            K DL + +    +   A                S  ++E S+KT  NV  +F A  K
Sbjct: 121 NKADLANKRMVEYEEAQAYADDN-----------SLLFMETSAKTAMNVNDLFLAIAK 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  ++ PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 125 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 164

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 162

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   ++ +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   ++ +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F  +Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +   + A++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ +++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           D++          IT  QGE+  + I    + E S+K   NV  +F
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K DL D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           ++         VP     G  L   +G   + E S+K   NVK VF+  + V+
Sbjct: 142 ER--------VVP--AEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVI 183

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           ++         VP  T +G+ L + +G   + E S+K   +V+  F+  +  +
Sbjct: 143 ER--------VVP--TEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 184

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F +  V VDG  V  + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTK 119
           E +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        P +++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +D  + K+          ++    +EL K +G       S+K   NV   F+   +  L
Sbjct: 128 IDAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +   + A++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y ++A  W+ + R  A P + +IL G K DL 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 DDKQF-FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            +++  F++         AQ  EL        ++E S+ T +NV+  F    + +L
Sbjct: 144 PEREVTFLEAS-----RFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 187

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
            S   K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDT
Sbjct: 18  GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           AGQE +  +    YRGA   +L + +  + ++ ++   W+ + R H +  + I+L+G K 
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKS 136
Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           DL   +           +   +GE   +  G   ++E S+KT  NV+  F
Sbjct: 137 DLESRR----------DVKREEGEAFAREHG-LIFMETSAKTACNVEEAF 175

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   ++ +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     ++LVG K D  D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+
Sbjct: 128 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 169

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
           +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL D 
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +Q          ++  +GE   K + +  +IE S+K   NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLF 155

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79  DVFILAFSLISKASYE--NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+   N+ ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + T Q  EL K  G P +IE S+KT+Q V+  F   ++ +
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI 181

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +        AV    AQ         S  ++E S+KT  NV  +F A  K
Sbjct: 126 R--------AVEFQEAQAYADD---NSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTV 54
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH--YAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y+    
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
           I+L G K DL D +           +   +  EL +  G P Y E S+    N+    + 
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEM 178
Query: 173 AIKVVL 178
            + +++
Sbjct: 179 LLDLIM 184

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + +  + ++ ++   W+ + R H    + I+L+G K DL 
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             ++          +   +GE   +  G   ++E S+KT  NV+  F
Sbjct: 129 SRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 164

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G   VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 123
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +   + A++E S+K++ NV  +F
Sbjct: 124 DER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121
           GQE +  +    YRGA   ++ + +  +++Y +++  W+ + R+   P   IIL+G K D
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 131
Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           L   +           +T  + ++  +  G   ++E S+KT +NV+  F  A K +
Sbjct: 132 LEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
            DL D ++        VP+  A+  E  + IG+   +E S+K   N++ +F  
Sbjct: 138 CDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELFQG 179

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + T Q ++L +  G P +IE S+KT+Q V   F   ++ +
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 181

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
           QE +  L P   R +   ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K + +  +IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLF 160

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLR 123
            +  L P  YRGA   IL + +  + ++  +   W+ EL  Y     I+  LVG K+D +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           ++++  +D    +               S  +IE S+KT   V+  F+  ++ ++
Sbjct: 134 ENRE--VDRNEGLKFARKH---------SXLFIEASAKTCDGVQCAFEELVEKII 177

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 22/178 (12%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  D   T+   F+   + ++G  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A   V + L+G K DL 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLA 131
Query: 124 DDKQFFIDHPGAVPI----TTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
                   H  AVP     T AQ  +L        + E S+   +NV   F+  I  +
Sbjct: 132 --------HLRAVPTEESKTFAQENQL-------LFTETSALNSENVDKAFEELINTI 174

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
           S SR  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61  TAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVG 117
           TAGQE + + +    YR     +  + + + AS+ ++   WI E + +  A  +P ILVG
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLR 123
            K DLR
Sbjct: 135 NKCDLR 140

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
            E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K + +  +IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLF 160

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V VGD +VGKTC++  + +  F      T+  +F+   + + G  V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YR A+  ILA+ +  ++S+ +V   WI ++R YA   +  +L+G K DL 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           + ++          ++ A+ + L +       IE S+K   NV+  F
Sbjct: 148 ELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
            E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K + +  +IE S+K   NVK +F
Sbjct: 134 ADKRQ----------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLF 170

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G+  V   +WDTAG E 
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K DL   
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPA--YIECSSKTQQNVKAVFDAAIKVVL 178
           ++        VP      EE R    +    ++E S+    NV+  F+  +K + 
Sbjct: 131 RE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGKT ++  +  +TF  +Y  T+  D  S  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAPGVPIILVGTKLDLRDD 125
           +  L P   R +   I+ + + ++ S+EN   KWI + L      V I LVG K DL D 
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           ++          +T  +G +  +   +  + E S+K   N+K +F
Sbjct: 122 RK----------VTYEEGXQKAQEYNT-XFHETSAKAGHNIKVLF 155

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTA
Sbjct: 28  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121
           GQ  +  +    YRGA   ++ + +  +++Y +++  W+ + R+   P   IIL+G K D
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 146
Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
           L   +           +T  + ++  +  G   ++E S+KT +NV+  F  A K +
Sbjct: 147 LEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWD 60
           S+ +  K V  GD AVGK+  L+    N F  +   T+  +F    ++VDG    L LWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAGQE +  +    +R AD  +L + +  + S+ N+ ++W+  +   A   VPI+LVG K
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKV 176
            D+RD         G   +    GE+L    G+  + E S+K   N V+AV   A +V
Sbjct: 143 ADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G+  V   +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K DL   
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPA--YIECSSKTQQNVKAVFDAAIKVVL 178
           ++        VP      EE R    +    ++E S+    NV+  F+  +K + 
Sbjct: 146 RE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           SR  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTA
Sbjct: 27  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63  GQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTK 119
           GQE + + +    YR     +  +   + AS+ ++   WI E + +  A  +P ILVG K
Sbjct: 87  GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNK 145
Query: 120 LDLR 123
            DLR
Sbjct: 146 CDLR 149

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAG 63
             K V +GD  VGK+ +L  +T + F  +   T+   F+   +   +   +   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
           QE Y  +    YRGA   +L + +  K S+EN+ +KW+ ELR  A   + I+LVG K DL
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +  +   I+   A     A+ E+L       A+IE S+    NV+  F
Sbjct: 126 KHLR--VINDNDATQY--AKKEKL-------AFIETSALEATNVELAF 162

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 13  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72
           G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73  LSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130
           LS      FIL +S+ S+ S E +    + I E++     +PI+LVG K D    ++   
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 131 DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 176
                  + +++ E L +     A++E S+K   NVK +F   + +
Sbjct: 127 -------VQSSEAEALAR-TWKCAFMETSAKLNHNVKELFQELLNL 164

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
            E +  L P   R +   ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K + +  +IE S+K   NVK +F
Sbjct: 131 ADKRQ----------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLF 167

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y N    W+ + R  A   + IIL G K DL 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 DDKQF-FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            D++  F++         AQ  EL        ++E S+ T +NV+  F    + +L
Sbjct: 129 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGENVEEAFVQCARKIL 172

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +  + F +DY PT+ D+++    VDG    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
             F+L F++  + S+  V K +   LR       P++LVG K DL   +Q        VP
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 138 ITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            + A        +   AY E S+K + NV   F+  ++ V
Sbjct: 134 RSEASAFGASHHV---AYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y N    W+ + R  A   + IIL G K DL 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 DDKQF-FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
            D++  F++         AQ  EL        ++E S+ T ++V+  F    + +L
Sbjct: 130 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGEDVEEAFVQCARKIL 173

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +DL + +           + T + +       +  Y E S+K   NV+  F    +  L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +DL + +           + T + +       +  Y E S+K   NV+  F    +  L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            Y  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGT 118
           TAGQED  + R    R  + F+L + +  + S+E V   K  + E++     V +ILVG 
Sbjct: 83  TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAVF 170
           K DL   +Q          ++T +GE+L   + + A+ ECS+ T + N+  +F
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATEL-ACAFYECSACTGEGNITEIF 182

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +D  + +           + T + +       +  Y E S+K   NV+  F    +  L
Sbjct: 127 IDFENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 126 K 126
           K
Sbjct: 123 K 123

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T++ F  +   T+   F+   + V+   +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A   V + L+G K DL 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+   +   +    + E S+    NV   F
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAF 164

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 63
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
           QE +  L P+ YRG+   I+ + +  + ++  + K W+ ELR H  P + + + G K DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 123 RDDKQ 127
            D ++
Sbjct: 123 TDVRE 127

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
           K
Sbjct: 135 K 135

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y N    W+ + R  A   + IIL G K DL 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 DDKQF-FIDHPGAVPITTAQGEELRKLIG---SPAYIECSSK 161
            D++  F++             E   L G     A+++C+ K
Sbjct: 127 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARK 168

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           TAG E +  L P+ YRG+   I+ + +  + ++  + K W+ ELR H  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLRDDKQ 127
            DL D ++
Sbjct: 121 CDLTDVRE 128

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 177
           +T  QG+E+      P YIE S+K    NV   F   ++V+
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 135
Query: 138 ITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 177
           +T  QG+E+      P YIE S+K    NV   F   ++V+
Sbjct: 136 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +DL + +           + T + +       +  Y E S+K   NV+  F    +  L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 177
           +T  QG+E+      P YIE S+K    NV   F   ++V+
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  L    Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61  TAGQEDYNRLRPLSY-RGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVG 117
           TAGQ++Y+ L P S+  G   ++L +S+ S  S++ V +    +L   H    VP++LVG
Sbjct: 79  TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVG 136
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K DL  +++          +   +G++L +  G+  ++E S++  Q  + +F   I+ +
Sbjct: 137 NKADLSPERE----------VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEI 185

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 177
           +T  QG+E+      P YIE S+K    NV   F   ++V+
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 126 K 126
           K
Sbjct: 132 K 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 K 126
           K
Sbjct: 126 K 126

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
             FIL +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL              
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDLE----------SER 124
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
            +++++G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 125 EVSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +      YV T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
           K
Sbjct: 135 K 135

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79  DVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
             FIL FS+ SK S E +    K I +++     +P++LVG K    D+ Q  +D   A 
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC---DETQREVDTREAQ 137
Query: 137 PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174
            +     +E +      A++E S+K   NVK +F   +
Sbjct: 138 AV----AQEWK-----CAFMETSAKMNYNVKELFQELL 166

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 K 126
           K
Sbjct: 125 K 125

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 K 126
           K
Sbjct: 124 K 124

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 K 126
           K
Sbjct: 132 K 132

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILV 116
           TAGQ++Y+ + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           G K DL  ++           I+  +G+ L +   + A++E S+K  Q    VF
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAES-WNAAFLESSAKENQTAVDVF 160

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHYAPGV--PIILVG 117
           TAGQ++Y+ + P +Y    + +IL +S+ S  S+E V K    +L      V  PI+LVG
Sbjct: 61  TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            K DL  ++           I+  +G+ L +   + A++E S+K  Q    VF
Sbjct: 119 NKKDLHMER----------VISYEEGKALAES-WNAAFLESSAKENQTAVDVF 160

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68  NRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTKLDLR 123
           + + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LVG K DL 
Sbjct: 63  S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            ++           I+  +G+ L +   + A++E S+K  Q    VF
Sbjct: 120 MER----------VISYEEGKALAES-WNAAFLESSAKENQTAVDVF 155

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  TV   N     + D G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
               L+ + Y GA   IL F + S+ + +N+A +W+ E +       PI++   K+D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165
            ++  I     + +   +  E         Y E S+KT  N
Sbjct: 132 RQK--ISKKLVMEVLKGKNYE---------YFEISAKTAHN 161

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 6   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 60
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
             G+ ++  L     +  D +++ +S+  +AS+E  ++  I   R      +PIILVG K
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            DL   ++  +    A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 6   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 60
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
             G+ ++  L     +  D +++ +S+  +AS+E  ++  I   R      +PIILVG K
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            DL   ++  +    A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---L 56
           S + + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L
Sbjct: 2   SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +++ +S+  +AS+E  ++  I   R      +PIIL
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 116 VGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           VG K DL   ++  +    A  +           +    +IE S+  Q NVK +F+  ++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVR 168
Query: 176 VV 177
            V
Sbjct: 169 QV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---L 56
           S + + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +++ +S+  +AS+E  ++  I   R      +PIIL
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 116 VGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           VG K DL   ++  +    A  +           +    +IE S+  Q NVK +F+  ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVR 199
Query: 176 VV 177
            V
Sbjct: 200 QV 201

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S SR  K   +G  +VGK+ + I +    F     PT+ + F+  + V+G   +L L DT
Sbjct: 2   SKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDT 59
Query: 62  AGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILVG 117
           AGQ++Y+ + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LVG
Sbjct: 60  AGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVG 116
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
            K DL  ++           I+  +G+ L +   + A++E S+K  Q    VF
Sbjct: 117 NKKDLHMER----------VISYEEGKALAES-WNAAFLESSAKENQTAVDVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 41  DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 100
           +N++ N+      +   +WDTAGQE Y  + PL YRGA   I+ F  IS ++  + AK W
Sbjct: 84  NNYNENLC----NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTW 138
Query: 101 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160
           + +L+  +    IILV  K+   D  +F +D         AQ   L        +I+ S+
Sbjct: 139 VNQLK-ISSNYIIILVANKI---DKNKFQVDILEVQKY--AQDNNL-------LFIQTSA 185
Query: 161 KTQQNVKAVF 170
           KT  N+K +F
Sbjct: 186 KTGTNIKNIF 195

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLW 59
           S  R +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G+  V L +W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPII-L 115
           D  GQ    ++      GA   +L + + +  S+EN+ + W   + ++   +   P++ L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKLDLR 123
           VG K+DL 
Sbjct: 121 VGNKIDLE 128

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 66  DYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDL 122
           D    LR    +  D F++ FS+  + S+  V +  +  LR   P   +P+ILVG K DL
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 142
Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVV 177
              ++  +             EE R L G  S  +IE S+    N + +F+ A++ +
Sbjct: 143 ARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT--AGQE 65
           + V +GD  VGKT +   +        +     D +   + VDG    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRD 124
           D +  +    +G   +++ +S+  + S+E+ ++  I   R H A  VPIILVG K DL  
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
            ++  ++   A  +           +    +IE S+  Q NV  +F+ 
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFEG 162

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQ 64
           K + VG+  VGK+ +  + T      D+   +    D +   ++VD   V L ++D   Q
Sbjct: 4   KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65  EDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLD 121
            D    L+    +  D F++ FS+  + S+  V +  +  LR   P   +P+ILVG K D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVV 177
           L   ++  +             EE R L G  S  +IE S+    N + +F+ A++ +
Sbjct: 121 LARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G+  VGK+ +  ++        + +    D +   ++VD   V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 67  YNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLR 123
               L+    +  D F++ FS+  + S+  V +  +  LR   P   +P+ILVG K DL 
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVV 177
             ++  +             EE R L G  S  +IE S+    N + +F+ A++ +
Sbjct: 133 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           MS     K + +G   VGK+ +  +     +    +     +D    ++VVDG   +L +
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMV 58
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVG 117
           +D   Q+    L        D +++ +S+  K S+E  ++  +   R      VPIILVG
Sbjct: 59  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 118
Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K DL   ++  +D   A  +           +    +IE S+    NV+A+F+  ++ +
Sbjct: 119 NKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 42  NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 101
            +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  ++  +
Sbjct: 37  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 102 PELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160
              R      VPIILVG K DL   ++  +D   A  +           +    +IE S+
Sbjct: 97  QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 161 KTQQNVKAVFDAAIKVV 177
               NV+A+F+  ++ +
Sbjct: 146 ALHHNVQALFEGVVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 42  NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 101
            +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  ++  +
Sbjct: 42  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 102 PELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160
              R      VPIILVG K DL   ++  +D   A  +           +    +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 161 KTQQNVKAVFDAAIKVV 177
               NV+A+F+  ++ +
Sbjct: 151 ALHHNVQALFEGVVRQI 167

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
           L +WD AG+E++    P       +++  + L    +  +  K W+  ++  A   P+IL
Sbjct: 56  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 116 VGTKLDLRDDKQ 127
           VGT LD+ D+KQ
Sbjct: 116 VGTHLDVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
           L +WD AG+E++    P       +++  + L    +  +  K W+  ++  A   P+IL
Sbjct: 58  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 116 VGTKLDLRDDKQ 127
           VGT LD+ D+KQ
Sbjct: 118 VGTHLDVSDEKQ 129

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DTA  + 
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 67  -YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLD 121
             N  R L++  A  F++ +S +      + +  ++  L  +A      +P +L+G KLD
Sbjct: 82  PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +   +Q          +T A+G  L    G   +   +    ++V+ VF  A++
Sbjct: 139 MAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT  +    S  F  D +PTV   F+   V  G+ V + +WD  GQ  +  + 
Sbjct: 28  VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMW 84
Query: 72  PLSYRGADVFILAFSLISKASYE-------NVAKKWIPELRHYAPGVPIILVGTKLDL-- 122
               RG +  +       +   E       N+  K  P+L+    G+P++++G K DL  
Sbjct: 85  ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNKRDLPN 138
Query: 123 -RDDKQFF 129
             D+KQ  
Sbjct: 139 ALDEKQLI 146

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTV-FDNFSANVVVDGSTVN-- 55
           ++A+   K   VG+  VGK+ ++  +TS  + F  DY  T   +   A V +  +TV+  
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG----V 111
           L L DTAG + Y       + G    IL F + S  S+E+  K W   L+   P     +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFES-CKAWFELLKSARPDRERPL 133
Query: 112 PIILVGTKLDL 122
             +LV  K DL
Sbjct: 134 RAVLVANKTDL 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-117
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-112
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-111
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-108
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-105
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-105
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-103
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-102
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-102
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-101
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-100
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-98
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-98
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-88
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-53
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-52
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-50
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-50
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-50
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-48
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-48
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	7e-48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-47
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-47
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-46
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	7e-46
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-45
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-45
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-45
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-44
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-44
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-44
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-44
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-43
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-43
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-43
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-43
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-43
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-43
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	8e-42
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	9e-42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	9e-42
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-41
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-41
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-41
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-41
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-41
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-41
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-41
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	6e-41
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	7e-41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	8e-41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	8e-41
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-40
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-40
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-40
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-40
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-40
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-40
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	8e-40
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-39
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-39
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-39
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-39
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-39
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-39
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-37
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-37
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	8e-37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-36
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-33
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	9e-32
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-13
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  330 bits (848), Expect = e-117
 Identities = 154/200 (77%), Positives = 169/200 (84%), Gaps = 6/200 (3%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDK +  DH     IT+ QGEELRK IG+ AYIECSSKTQQNVKAVFD AIKVVLQP
Sbjct: 124 DLRDDKGYLADHTN--VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PKQK----KKKKKSHRACSI 196
           P++K    ++K      CSI
Sbjct: 182 PRRKEVPRRRKNHRRSGCSI 201

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  316 bits (813), Expect = e-112
 Identities = 167/180 (92%), Positives = 178/180 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFIDHPGAVPITT QGEEL+KLIG+PAYIECSSK+Q+NVK VFDAAI+VVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  316 bits (811), Expect = e-111
 Identities = 74/184 (40%), Positives = 112/184 (60%), Gaps = 8/184 (4%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N++ KW PE++HY      +LVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           LR D            +T  +G++L + +G  AYIE SS  +  +  VF+ ++  +    
Sbjct: 139 LRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

Query: 182 KQKK 185
              K
Sbjct: 191 PVPK 194

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  307 bits (787), Expect = e-108
 Identities = 92/187 (49%), Positives = 132/187 (70%), Gaps = 2/187 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            +  R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L D
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQ+++++LRPL Y   D+F+L FS++S +S++NV++KW+PE+R + P  PIILVGT+ 
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134

Query: 121 DLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D +  I  D     P+     + L + I + +YIECS+ TQ+N+K VFDAAI   +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 179 QPPKQKK 185
           Q    ++
Sbjct: 195 QYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  300 bits (771), Expect = e-105
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 2/181 (1%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
           +DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 125 DKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
           DK         G  P+T  +G+E+ + +G+ AY+ECS++   NV AVF  A +V L    
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212

Query: 183 Q 183
           +
Sbjct: 213 R 213

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  300 bits (769), Expect = e-105
 Identities = 86/181 (47%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VPIILV  K DLR D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 127 QFFIDHP--GAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
               +       P+ T  G  +   I +  Y+ECS+KT++ V+ VF+ A +  LQ     
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205

Query: 185 K 185
           +
Sbjct: 206 Q 206

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  294 bits (755), Expect = e-103
 Identities = 113/177 (63%), Positives = 135/177 (76%), Gaps = 2/177 (1%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
            + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           QEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLR
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147

Query: 124 DDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  293 bits (752), Expect = e-102
 Identities = 89/181 (49%), Positives = 122/181 (67%), Gaps = 3/181 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 21  MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139

Query: 121 DLRDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR D+    +       P+ + +G ++   I +  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 179 Q 179
           Q
Sbjct: 200 Q 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  290 bits (745), Expect = e-102
 Identities = 116/185 (62%), Positives = 138/185 (74%), Gaps = 2/185 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 RDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           RDDK            PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 PKQKK 185
           P  KK
Sbjct: 182 PPVKK 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  288 bits (739), Expect = e-101
 Identities = 94/180 (52%), Positives = 132/180 (73%), Gaps = 2/180 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            +  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 123 RDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           RDD +     +     PI   QG++L K IG+  Y+ECS+ TQ+ +K VFD AI  +L P
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  288 bits (738), Expect = e-100
 Identities = 63/176 (35%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 127 QFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVVLQ 179
              ++  +    P++  QG  + K IG+  YIECS+   +N V+ +F  A    + 
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  283 bits (725), Expect = 2e-98
 Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
                 K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           +G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K D
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

Query: 122 LRDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVVL 178
           LR D    ++  H    PI+  QG  + K +G+  Y+E S+ T + ++ ++F  A  + L
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

Query: 179 QPPKQKKKKK 188
             P    +K 
Sbjct: 203 NKPSPLPQKS 212

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  281 bits (722), Expect = 2e-98
 Identities = 63/176 (35%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 127 QFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVVLQ 179
              ++  +    P++  QG  + K IG+  YIECS+   +N V+ +F  A    + 
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  261 bits (669), Expect = 3e-88
 Identities = 113/183 (61%), Positives = 135/183 (73%), Gaps = 2/183 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

Query: 121 DLRDDKQFFID--HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDK            PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

Query: 179 QPP 181
            PP
Sbjct: 330 CPP 332

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  169 bits (430), Expect = 1e-53
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 18/199 (9%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYA-PGVPIILVGT 118
           TAGQ++Y+ L      G   ++L +S+ S  S++ + +    +    +    VP++LVG 
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL  +++          +   +G++L +  G+  ++E S++  Q  + +F   I+ + 
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEIA 186

Query: 179 QPPKQKKKKKKSHRACSIL 197
           +      ++++    C ++
Sbjct: 187 RVENSYGQERR----CHLM 201

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  165 bits (421), Expect = 1e-52
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 14/192 (7%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYA-PGVPIILVGT 118
           TAGQ++Y+          + +IL +S+ S  S+E + K    + L       +PI+LVG 
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL  ++           I+  +G+ L +   +  ++E S+K  Q    VF   I    
Sbjct: 120 KKDLHMERV----------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAE 168

Query: 179 QPPKQKKKKKKS 190
           +      + K S
Sbjct: 169 KMDGACSQGKSS 180

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  161 bits (409), Expect = 1e-50
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 24/206 (11%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   + V  G G VGK+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLD 121
              +  ++ LS      FIL FS+ SK S E +    K I +++     +P++LVG K D
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ-- 179
               ++          + T + + + +      ++E S+K   NVK +F   + +  +  
Sbjct: 126 E-TQRE----------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRRN 173

Query: 180 --------PPKQKKKKKKSHRACSIL 197
                      ++K+  +    C+++
Sbjct: 174 MSLNIDGKRSGKQKRTDRVKGKCTLM 199

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  160 bits (406), Expect = 3e-50
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 20/202 (9%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S   K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKL 120
           GQE+Y+ +R    R  + F+  F++ +  S+E++   +  +++       VP++LVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ- 179
           DL   +           + T Q ++L +  G P +IE S+KT+Q V   F   ++ + + 
Sbjct: 120 DL-PSRT----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 180 ----PPKQKKKKKKSHRACSIL 197
                   KKKKKKS   C I+
Sbjct: 168 KEKMSKDGKKKKKKSKTKCVIM 189

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  158 bits (402), Expect = 8e-50
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 22/190 (11%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKL 120
              +  ++ LS      FIL +S+ S+ S E + K     I E++     +PI+LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           D    ++          + +++ E L +      ++E S+K   NVK +F   + +    
Sbjct: 120 DESPSRE----------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLE--- 165

Query: 181 PKQKKKKKKS 190
               K++  S
Sbjct: 166 ----KRRTVS 171

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  158 bits (403), Expect = 1e-49
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 25/206 (12%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDL 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 131

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ--- 179
            D +Q          ++  + +   +      Y+E S+KT+ NV  VF   ++ +     
Sbjct: 132 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRARKM 180

Query: 180 --------PPKQKKKKKKSHRACSIL 197
                     K+K   K+    C IL
Sbjct: 181 EDSKEKNGKKKRKSLAKRIRERCCIL 206

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  154 bits (391), Expect = 5e-48
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 19/188 (10%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDL 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 135

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
            D +Q          ++  + +   +      Y+E S+KT+ NV  VF   ++ +     
Sbjct: 136 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREI----- 179

Query: 183 QKKKKKKS 190
           + +K + S
Sbjct: 180 RARKMEDS 187

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  153 bits (389), Expect = 6e-48
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125
             +R L  +    FIL +SL+++ S++++ K    ++        VP+ILVG K+DL  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           ++          +++++G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 124 RE----------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  153 bits (390), Expect = 7e-48
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 16/189 (8%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLD 121
           QE++  +R    R    F+L F++  + S+  V  K   ++         P++LVG K D
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           L   +Q          +  ++            Y E S+K + NV   F+  ++ V +  
Sbjct: 126 LESQRQ----------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRK-- 172

Query: 182 KQKKKKKKS 190
            Q+++   S
Sbjct: 173 YQEQELPPS 181

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  151 bits (384), Expect = 3e-47
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDL 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            D +Q          ++  + +          Y+E S+KT+ NV  VF   ++ +
Sbjct: 122 EDKRQ----------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  151 bits (385), Expect = 5e-47
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 19/192 (9%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
                  K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + D
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGT 118
           TAGQE+Y+ +R    R  + F+  F++ +  S+ ++   +  +++       VP++LVG 
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGN 134

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL   +           + T Q  EL K  G P +IE S+KT+Q V+  F   ++ + 
Sbjct: 135 KCDL-PTRT----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI- 181

Query: 179 QPPKQKKKKKKS 190
              +Q + KK +
Sbjct: 182 ---RQYRMKKLN 190

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  149 bits (380), Expect = 1e-46
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125
             +R L  +    F L +S+ +++++ ++ +    ++        VP+ILVG K DL D+
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 126 KQFFIDHPGAVPITTAQGEEL-RKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +   QG+ L R+      ++E S+K++ NV  +F   ++ + +
Sbjct: 124 RV----------VGKEQGQNLARQWCNCA-FLESSAKSKINVNEIFYDLVRQINR 167

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  149 bits (379), Expect = 2e-46
 Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++  ++  +++       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           + + Q ++L +  G P YIE S+KT+Q V+  F   ++ + Q
Sbjct: 123 RT----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  148 bits (376), Expect = 7e-46
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDD 125
           + +R    R  D F++ +S+  KAS+E+V  ++   +         P+ILV  K+DL   
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAVFDAAIKVVLQ 179
           ++          +T  QG+E+      P YIE S+K    NV   F   ++V+ Q
Sbjct: 139 RK----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  148 bits (375), Expect = 2e-45
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 20/191 (10%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGT 118
           TAGQED    R    R  + F+L + +  + S+E V       L        V +ILVG 
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 177
           K DL   +Q          ++T +GE+L   +    + ECS+ T + N+  +F    + V
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREV 189

Query: 178 LQPPKQKKKKK 188
               ++++  +
Sbjct: 190 ----RRRRMVQ 196

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  146 bits (372), Expect = 2e-45
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125
             L        D +++ +S+  K S+E    +   +LR       VPIILVG K DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           ++          ++  +G     +     +IE S+    NV+A+F
Sbjct: 122 RE----------VSVDEGRACAVVFDCK-FIETSAALHHNVQALF 155

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  147 bits (373), Expect = 3e-45
 Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 67  Y-NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLR 123
               LR    +  D F++ FS+  + S+  V  + +  LR       +P+ILVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
             ++          ++  +G  L   +    +IE S+    N + +F+ A++ +    + 
Sbjct: 144 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQI----RL 188

Query: 184 KKKKKKS 190
           ++ +  +
Sbjct: 189 RRGRNHA 195

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  145 bits (368), Expect = 1e-44
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 22/190 (11%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              + V +GD  VGKT +   +        +     D +   + VDG    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 65  E--DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKL 120
           E  D +  +    +G   +++ +S+  + S+E+   +   +LR  H A  VPIILVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DL   ++          ++  +G     +     +IE S+  Q NV  +F+  ++ +   
Sbjct: 122 DLARCRE----------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQL--- 167

Query: 181 PKQKKKKKKS 190
              + +++ S
Sbjct: 168 ---RLRRRDS 174

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  144 bits (366), Expect = 1e-44
 Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV  K+DL DD
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                       I   + E L K +    +   S K   NV  VF    +  LQ
Sbjct: 125 SC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  144 bits (366), Expect = 2e-44
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++        +     ++     ++VD   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 67  YN-RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLR 123
               L+    +  D F++ FS+  + S+  V  + +  LR       +P+ILVG K DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             ++          ++  +G  L   +    +IE S+    N + +F
Sbjct: 123 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 158

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  144 bits (366), Expect = 3e-44
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ +L+ +  NTF   Y+ T+  D     V ++G  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRG    I+ + + S  S+ NV K+W+ E+      V  ILVG K D  + 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           K           + T    +    +G     E S+K   NV+ +F+   ++VL+  K   
Sbjct: 129 KV----------VETEDAYKFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLRAKKDNL 177

Query: 186 KKKK 189
            K++
Sbjct: 178 AKQQ 181

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  143 bits (364), Expect = 6e-44
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 17/179 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K   VG+ + GK+ ++  Y + T+  +  P     F   +VVDG +  L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLDLRD 124
                       D  +  FSL  + S++ V   +   L  +     VP++LVGT+  +  
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
                        I  ++  +L   +    Y E  +    NV+ VF    + V+   K+
Sbjct: 134 ANP--------RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  142 bits (360), Expect = 2e-43
 Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 23/191 (12%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M +   ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILV 116
            AG  D           AD  I  FSL  + S++ V  +   +L         G+ + LV
Sbjct: 61  EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALV 114

Query: 117 GT--KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174
           GT  ++     +           +  A+   L   +   +Y E  +    NV  VF    
Sbjct: 115 GTQDRISASSPRV----------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

Query: 175 KVVLQPPKQKK 185
           + V+   KQ++
Sbjct: 165 QKVVTLRKQQQ 175

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  142 bits (360), Expect = 2e-43
 Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
                +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DT
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVG 117
           A  +   R        A  F++ +S+ S+ S+++    ++  L  +A      +P +L+G
Sbjct: 77  ADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134

Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ-QNVKAVFDAAIK 175
            KLD+   +Q          +T A+G  L    G   + E S+    ++V+ VF  A++
Sbjct: 135 NKLDMAQYRQ----------VTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVR 182

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  142 bits (361), Expect = 2e-43
 Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 25/205 (12%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL- 58
               + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L 
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 59  --WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPII 114
             W+  G+ ++  L     +  D +++ +S+  +AS+E    +   +LR       +PII
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118

Query: 115 LVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174
           LVG K DL   ++          ++ ++G     +     +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDLVRXRE----------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIV 167

Query: 175 KVV----LQPPKQKKKKKKSHRACS 195
           + V        K +++     R  S
Sbjct: 168 RQVRLRRDSKEKNERRLAYQKRKES 192

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  142 bits (361), Expect = 3e-43
 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 24/193 (12%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL---W 59
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L   W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVG 117
           +  G+ ++  L     +  D +++ +S+  +AS+E    +   +LR       +PIILVG
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVG 152

Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K DL   ++          ++ ++G     +     +IE S+  Q NVK +F     +V
Sbjct: 153 NKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELF---EGIV 198

Query: 178 LQPPKQKKKKKKS 190
            Q   ++  K+K+
Sbjct: 199 RQVRLRRDSKEKN 211

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  142 bits (359), Expect = 7e-43
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 15/178 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D K
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
                         A+     +      Y + S+K+  N +  F    + ++  P  +
Sbjct: 136 V------------KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  141 bits (358), Expect = 7e-43
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGD +VGKTC++  + +  F      T+  D     + + G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YR A+  ILA+ +  ++S+ +V   WI ++R YA   +  +L+G K DL +
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++          ++ A+ + L +       IE S+K   NV+  F      ++ 
Sbjct: 149 LRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  139 bits (352), Expect = 8e-42
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  T    ++    +   G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
               L+ + Y GA   IL F + S+ + +N+  +W+ E +       PI++   K+D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            ++          I+     E+ K      Y E S+KT  N    F    ++    P   
Sbjct: 132 RQK----------ISKKLVMEVLKGKNYE-YFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  138 bits (349), Expect = 9e-42
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 19/186 (10%)

Query: 1   MSASRFI-KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGL 58
           M+    + K + +GDG VGK+ ++  Y +N F T    T+  +  + ++ VDG  V + +
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPI 113
           WDTAGQE +  LR   YRG+D  +L FS+    S++N+   W  E  +YA        P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPF 119

Query: 114 ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 173
           +++G K+D+  ++Q          ++T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 120 VILGNKIDI-SERQ----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

Query: 174 IKVVLQ 179
           ++ VL 
Sbjct: 169 VRRVLA 174

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  137 bits (348), Expect = 9e-42
 Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  N F   ++ T+     +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+DL  
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++           ++  + E   + +G+  +   S+K  + ++ +F    K +++
Sbjct: 126 ERH----------VSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  138 bits (350), Expect = 1e-41
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  D     V ++G  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YR A+  IL + +  + S+  +  +W+ E+  YA   V  +LVG K+DL +
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            ++          ++  + EE  +      Y+E S+K   NV+ +F      ++   +Q 
Sbjct: 146 RRE----------VSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 185 K 185
            
Sbjct: 195 T 195

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  137 bits (348), Expect = 2e-41
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K DL D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++           +    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 142 ERV----------VPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  137 bits (347), Expect = 2e-41
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNL 56
           MS+ +   +K + +GD  VGKT ++  Y ++ +   Y  T+  D  +  V VDG     +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGV 111
            +WDTAGQE +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119

Query: 112 PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
           P +++G K+D  + K+          ++    +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 172 AAIKVVLQ 179
              +  LQ
Sbjct: 171 EIARSALQ 178

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  137 bits (347), Expect = 2e-41
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 14/180 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N F  D   T+  +  +  V++  + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K DL  
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            ++          + T +     +  G   ++E S+    NV+  F+  +K +     ++
Sbjct: 145 ARE----------VPTEEARMFAENNGLL-FLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  137 bits (347), Expect = 3e-41
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            K           +     +E    +G P ++E S+K   NV+  F      + +
Sbjct: 153 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKK 196

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  137 bits (348), Expect = 3e-41
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 14/186 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 135

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            +Q          ++  +GE   K +    +IE S+K   NVK +F      +      +
Sbjct: 136 KRQ----------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQ 184

Query: 185 KKKKKS 190
            + ++ 
Sbjct: 185 DRSRED 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  136 bits (345), Expect = 3e-41
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 20/178 (11%)

Query: 1   MSASRF------IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGST 53
           MS+  F       K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP 112
           V L LWDTAGQE +  L P   R + V ++ + + +  S+     KWI ++R      V 
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVI 121

Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           I+LVG K DL D +Q          ++T +GE   K +    +IE S+K   NVK +F
Sbjct: 122 IMLVGNKTDLSDKRQ----------VSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  137 bits (347), Expect = 3e-41
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+  V + W  +++ Y+     ++LVG K D+ D
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +   + 
Sbjct: 128 ERV----------VSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICEKMSES 176

Query: 185 KKKKKSHRA 193
                    
Sbjct: 177 LDTADPAVT 185

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  136 bits (346), Expect = 3e-41
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +T   F   +  T+  +  +  V +DG  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + +  + ++ ++   W+ + R ++   + I+L+G K DL  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            +           +   +GE   +  G   ++E S+KT  NV+  F    K + +
Sbjct: 141 RRD----------VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 184

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  136 bits (345), Expect = 3e-41
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +GD   GK+ +++ +  + F      T+    FS  + V+ +TV   +WDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ F + ++AS+E   KKW+ EL+    P + + L G K DL D
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            ++          +T    +   +  G   ++E S+KT  NVK +F    + + +    +
Sbjct: 132 ARK----------VTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  137 bits (346), Expect = 4e-41
 Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 8/181 (4%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLW 59
            S+ +  K V  GD AVGK+  L+    N F  +   T+  D     ++VDG    L LW
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
           DTAGQE +  +    +R AD  +L + +  + S+ N+ ++W+  +   A   VPI+LVG 
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141

Query: 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           K D+RD           VP     GE+L    G+  + E S+K   N+        + V 
Sbjct: 142 KADIRDTAATEGQK--CVP--GHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVK 196

Query: 179 Q 179
           +
Sbjct: 197 K 197

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  136 bits (345), Expect = 4e-41
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+  V + W  +++ Y+     +ILVG K D+ +
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEE 142

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++           + T +G+ L + +G   + E S+K   +V+  F+  +  +  
Sbjct: 143 ERV----------VPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAICD 186

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  136 bits (344), Expect = 6e-41
 Identities = 49/186 (26%), Positives = 94/186 (50%), Gaps = 14/186 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K D+ D
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVND 127

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            +Q          ++  +GE+L    G   ++E S+K   NV+  F    + +     + 
Sbjct: 128 KRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKMDKN 176

Query: 185 KKKKKS 190
            K   +
Sbjct: 177 WKATAA 182

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  136 bits (344), Expect = 6e-41
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+  +  S  + V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + S+ +Y  +   W+ + R  A   + IIL G K DL  D
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           ++          +T  +     +      ++E S+ T +NV+  F    + +L   +  +
Sbjct: 131 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGE 179

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  135 bits (342), Expect = 7e-41
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + ++ S+    K W+ EL+  A P + I L G K DL + 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +   + +          ++E S+KT  NV  +F A  K + +
Sbjct: 127 RA----------VDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  135 bits (343), Expect = 8e-41
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T   F  D   T+  +  +  + V G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   ++ + +  +++Y ++   W+ + R+   P   IIL+G K DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +T  + ++  +  G   ++E S+KT +NV+  F  A K + Q
Sbjct: 136 RD----------VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQ 178

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  135 bits (343), Expect = 8e-41
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           D++          IT  QGE+  + I    + E S+K   NV  +F   +  +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  136 bits (344), Expect = 9e-41
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 14/186 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRG+   I+ + +  + S+  V K W+ E+  YA   V  +LVG K DL+D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            +           +     +E       P ++E S+    NV+  F    + + +   Q+
Sbjct: 128 KRV----------VEYDVAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 185 KKKKKS 190
              + +
Sbjct: 177 NLNETT 182

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  135 bits (342), Expect = 1e-40
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 14/180 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+  +  S  V V G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + S+ +Y ++   W+ + R  A P + +IL G K DL  +
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           ++          +T  +     +      ++E S+ T +NV+  F    + +L      +
Sbjct: 146 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILNKIDSGE 194

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  135 bits (342), Expect = 2e-40
 Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y R+    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           +           + T +     +      +IE S+    NV+  F   +  + +   QK+
Sbjct: 126 RA----------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  135 bits (341), Expect = 2e-40
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            K           +     +E    +G P ++E S+K   NV+  F      + +     
Sbjct: 136 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

Query: 185 KKKKKSHRA 193
                + ++
Sbjct: 185 ATAGGAEKS 193

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  134 bits (340), Expect = 2e-40
 Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+     +  V          +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ +    + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137

Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            DL D ++          +     +E  + IG+   +E S+K   N++ +F    + +  
Sbjct: 138 CDLSDIRE----------VPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPP 186

Query: 180 PPKQK 184
               +
Sbjct: 187 LDPHE 191

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  135 bits (341), Expect = 3e-40
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 14/185 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  D   T+  +  +  + ++G  +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A   V + L+G K DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           +           + T + +   +      + E S+   +NV   F+  I  + Q   + +
Sbjct: 134 RA----------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSKHQ 182

Query: 186 KKKKS 190
                
Sbjct: 183 MDLGD 187

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  134 bits (339), Expect = 4e-40
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K DLR  
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +           + T +     +  G   +IE S+    NV+A F   + 
Sbjct: 150 RA----------VPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 188

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  133 bits (337), Expect = 8e-40
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 27/197 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------FDNFSANVVVDGSTVN 55
           IK + +GD  VGKT +L  YT   F + ++ TV             N     V  G  ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI 113
           L LWDTAG E +  L    +R A  F+L F L ++ S+ NV + WI +L+ +A      I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130

Query: 114 ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 173
           +L G K DL D +           +   +  EL +  G P Y E S+    N+    +  
Sbjct: 131 VLCGNKSDLEDQRA----------VKEEEARELAEKYGIP-YFETSAANGTNISHAIEML 179

Query: 174 IKVVLQPPKQKKKKKKS 190
           + ++++  + ++   KS
Sbjct: 180 LDLIMK--RMERSVDKS 194

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  133 bits (336), Expect = 1e-39
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 16/187 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLR 123
            +  L P  YRGA   IL + +  + ++  +   W+ EL  Y     +  +LVG K+D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
           ++++          +   +G +  +      +IE S+KT   V+  F+  ++ ++Q P  
Sbjct: 134 ENRE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 184 KKKKKKS 190
            + + ++
Sbjct: 183 WESENQN 189

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  132 bits (334), Expect = 1e-39
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+     +  V          +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAG E +  L P+ YRG+   I+ + +  + ++  + K W+ ELR +  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120

Query: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            DL D ++          +     ++    I +  ++E S+K   N+  +F    + +  
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISRRIPS 169

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  133 bits (336), Expect = 1e-39
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 20/192 (10%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG 57
           M++ +   +K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V+VD   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVP 112
           +WDTAGQE +  L    YRGAD  +L F + +  +++ +   W  E    A        P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119

Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172
            +++G K+DL + +           + T + +       +  Y E S+K   NV+  F  
Sbjct: 120 FVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168

Query: 173 AIKVVLQPPKQK 184
             +  L+   + 
Sbjct: 169 IARNALKQETEV 180

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  133 bits (336), Expect = 2e-39
 Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 31/201 (15%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG----------STVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  D     VV +             V+
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 56  LGLWDTAGQEDYNRLRPLS---YRGADVFILAFSLISKASYENVAKKWIPELRHYA--PG 110
           L LWDTAGQE   R R L+   +R A  F+L F L S+ S+ NV + W+ +L+  A    
Sbjct: 86  LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141

Query: 111 VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
             I+L+G K DL D ++          +   Q  EL    G P Y E S+ T QNV+   
Sbjct: 142 PDIVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAV 190

Query: 171 DAAIKVVLQPPKQKKKKKKSH 191
           +  + ++++  +Q  +K +  
Sbjct: 191 ETLLDLIMKRMEQCVEKTQIP 211

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  131 bits (332), Expect = 3e-39
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 15/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D+ +
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 121

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            +           +T  QGE L K +G P +IE S+K   NV  +F    K++ +
Sbjct: 122 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  132 bits (334), Expect = 3e-39
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D+ +
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            +           +T  QGE L K +G P +IE S+K   NV  +F    K++ +     
Sbjct: 139 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

Query: 185 KKKKKSH 191
           K     +
Sbjct: 188 KLVGVGN 194

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  130 bits (330), Expect = 5e-39
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 15/176 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    ++ TV  D  +  + VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YR A   +L + + +KAS++N+ + W+ E+  YA   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++           +    GE+L K  G P ++E S+KT  NV   F A  K + +
Sbjct: 130 HERV----------VKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 174

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  127 bits (322), Expect = 1e-37
 Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSA-NVVVDGS---TVNLGLWD 60
           +K + VG+   GKT +L                TV  +     + +       + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
            AG+E++    P       +++  + L    +  +  K W+  ++  A   P+ILVGT L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA----YIECSSKTQQNVKAVFDAAIKV 176
           D+ D+KQ            +   +EL    G PA    +   +++    +  +    I  
Sbjct: 123 DVSDEKQ-------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

Query: 177 VLQ 179
            L 
Sbjct: 176 SLN 178

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  126 bits (320), Expect = 2e-37
 Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 18/184 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQ 64
           +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKL 120
               ++      GA   +L + + +  S+EN+ + W   ++  +        + LVG K+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DL   +           I   +     +  G       S+KT  +V   F      +L  
Sbjct: 126 DLEHMRT----------IKPEKHLRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILGI 174

Query: 181 PKQK 184
              K
Sbjct: 175 KLNK 178

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  125 bits (317), Expect = 8e-37
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 19/180 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+   + +  FP     T+  D     V +DG  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 66  DYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDL 122
            + + +    YR     +  + + + AS+ ++   WI E + +     +P ILVG K DL
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDL 139

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ---QNVKAVFDAAIKVVLQ 179
           R   Q          + T   ++       P   E S+K      +V+A+F      +  
Sbjct: 140 RSAIQ----------VPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  124 bits (314), Expect = 4e-36
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 21/194 (10%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYT--SNTFPTDYVPTV-FDNFSANVVVDGSTVNLG 57
           ++A+   K   VG+  VGK+ ++  +T   + F  DY  T   +   A V +  +TV++ 
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 58  LW--DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGV 111
           L+  DTAG + Y       + G    IL F + S  S+E+  K W   L+         +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133

Query: 112 PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK-TQQNVKAVF 170
             +LV  K DL   +         V       ++         + + S+    ++  A F
Sbjct: 134 RAVLVANKTDLPPQRH-------QVR--LDMAQDWATTNTLD-FFDVSANPPGKDADAPF 183

Query: 171 DAAIKVVLQPPKQK 184
            +      +  + K
Sbjct: 184 LSIATTFYRNYEDK 197

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  124 bits (312), Expect = 1e-33
 Identities = 37/190 (19%), Positives = 57/190 (30%), Gaps = 24/190 (12%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV---------DGSTVNLG 57
           IK   +GDG  GKT +L      TF      T   N                +       
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
            WD  GQE  +         + V++L        +  N    W+  +  Y    P+I+V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157

Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K+D                I   +  E    I +  +   S K    V+++  +    V
Sbjct: 158 NKIDENPSYN----------IEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSAV 206

Query: 178 LQPPKQKKKK 187
           L P       
Sbjct: 207 LHPDSIYGTP 216

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  116 bits (293), Expect = 2e-33
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  L P  YR A   ++ + +    S+    + W+ EL   A   + I LVG K+D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170
           +        G   +   +GE+L +  G   + E S+KT +NV  VF
Sbjct: 123 E-------GGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVF 160

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  113 bits (284), Expect = 9e-32
 Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 52/217 (23%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG-- 57
           M      K V +G+ +VGK+ +++  T +TF  +   T+     +  V ++   +     
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 58  -----------------------------------LWDTAGQEDYNRLRPLSYRGADVFI 82
                                              +WDTAGQE Y  + PL YRGA   I
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 83  LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 142
           + F + +  + +   K W+ +L+       IILV  K+D  +  Q          +   +
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKFQ----------VDILE 168

Query: 143 GEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++  +      +I+ S+KT  N+K +F    + + +
Sbjct: 169 VQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 65.2 bits (159), Expect = 1e-13
 Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 42/205 (20%)

Query: 7   IKCVTVGDGAVGKTCML----------ISYTSNTFPTDYVPTVFDNFSANVV--VDGSTV 54
            K V  G G  GKT  L                +  T+   T+F +F    +  V G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFIL------AFSLISKASYENVAKKWIPELRHYA 108
              L+   GQ  YN  R L  RG D  +            +  S  N+ +          
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 109 PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA---YIECSSKTQQN 165
             VPI++   K DL          P A+P+     E +R ++        +E  +   + 
Sbjct: 135 -DVPIVIQVNKRDL----------PDALPV-----EMVRAVVDPEGKFPVLEAVATEGKG 178

Query: 166 VKAVFDAAIKVVLQPPKQKKKKKKS 190
           V        ++VL      +    S
Sbjct: 179 VFETLKEVSRLVL-----ARVAGGS 198

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 23/159 (14%)

Query: 29  NTFPTDYVPTVFDNFSANVVVDGSTVNLGL----WDTAGQEDY--NRLRPLSYRGADVFI 82
           +     +  T    +              L     D  G E     +  P      D F+
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 83  LAF--SLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLDLRDDKQFFIDHPGAVPI 138
           L    S     ++++   K++  L +       PI++V TK D   ++           I
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I 216

Query: 139 TTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
             A    L K       +E S+++  NV   F   ++++
Sbjct: 217 RDAHTFALSKK-NLQ-VVETSARSNVNVDLAFSTLVQLI 253

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           K + +G    GK+ M     SN    D      T+  +   + +     + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 65  EDY-----NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVG 117
           + +      + +   ++   V I  F + S    +++    K + +LR Y+P   I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 118 TKLDLRDDKQ 127
            K+DL    +
Sbjct: 123 HKMDLVQLDK 132

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
            + + +G    GK+ +         P +      T       + + + S VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 64  QEDYNRL---RPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGT 118
           Q D+        + +RG    I           E + +    + +     P +   +   
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIH 137

Query: 119 KLDL 122
           K+D 
Sbjct: 138 KVDG 141

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 7/116 (6%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           +G    GK+ +      N  P D    +    + ++    + ++L + +  GQ +Y    
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63

Query: 72  PLS---YRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDL 122
             S   ++     +             +      I       P + I ++  K+D 
Sbjct: 64  YDSERLFKSVGALVYVID-SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 46/178 (25%)

Query: 12  VG-DGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANV-VVDGSTVNLGLWDTAGQEDYN 68
           VG   + GKT  +    S  F  D +PTV F     N+  +    V + LWD  GQ    
Sbjct: 28  VGLQYS-GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQP--- 78

Query: 69  RLRPL---SYRGADVFI----------LAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
           R R +     RG    +          +     SK    N+  K  P+L+    G+P+++
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIE---ASKNELHNLLDK--PQLQ----GIPVLV 129

Query: 116 VGTKLDLRDDKQFFIDHPGAVPITT-AQGEELRKLIGSPAYI-ECSSKTQQNVKAVFD 171
           +G K DL          PGA+      +   L  +          S K + N+     
Sbjct: 130 LGNKRDL----------PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.81
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.8
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.75
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.68
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.67
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.63
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.62
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.6
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.56
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.52
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.43
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.31
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.3
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.27
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.08
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.02
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.99
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.96
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.93
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.92
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.56
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.54
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.52
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.51
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.43
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.42
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.32
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.21
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.15
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.99
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.92
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.91
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.7
2xxa_A	433	Signal recognition particle protein; protein trans	97.56
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.56
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.49
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.48
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.44
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.4
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.36
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.36
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.35
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.34
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.34
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.32
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.31
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.3
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.29
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.28
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.27
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.25
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.23
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.23
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.17
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.16
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.14
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.13
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.12
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.11
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.1
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.08
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.08
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.07
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.04
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.04
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.03
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.02
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.01
1g6h_A	257	High-affinity branched-chain amino acid transport	97.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.99
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.98
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.98
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.98
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.98
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.98
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.97
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.97
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.97
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.96
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.96
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.95
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.94
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.93
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.93
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.93
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.92
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.92
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.92
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.91
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.91
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.91
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.9
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.9
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.9
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.89
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.89
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.89
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.88
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.87
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.87
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.86
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.85
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.85
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.84
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.84
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.83
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.81
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.79
1via_A	175	Shikimate kinase; structural genomics, transferase	96.79
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.78
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.75
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.75
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.73
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.73
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.73
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.73
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.72
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.72
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.71
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.7
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.69
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.68
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.68
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.68
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.68
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.67
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.67
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.67
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.66
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.66
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.65
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.64
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.64
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.63
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.63
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.62
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.61
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.6
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.6
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.58
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.57
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.57
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.57
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.56
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.55
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.55
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.55
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.53
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.52
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.52
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.51
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.51
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.51
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.5
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.5
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.5
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.49
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.48
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.48
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.48
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.46
3bos_A	242	Putative DNA replication factor; P-loop containing	96.44
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.42
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.41
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.39
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.39
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.38
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.38
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.35
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.35
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.35
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.34
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.34
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.34
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.33
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.32
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.3
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.29
2og2_A	359	Putative signal recognition particle receptor; nuc	96.28
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.28
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.28
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.28
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.27
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.25
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.24
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.24
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.23
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.21
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.16
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.16
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.14
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.14
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.14
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.13
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.12
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.11
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.08
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.07
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.05
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.0
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.99
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.99
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.98
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.97
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.96
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.94
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.93
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.9
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.9
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.89
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.87
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.87
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.84
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.82
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.82
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.81
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.8
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.77
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.76
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.76
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.76
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.75
3co5_A	143	Putative two-component system transcriptional RES	95.74
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.73
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.71
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.7
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.68
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.67
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.64
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.63
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.63
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.62
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.62
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.62
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.61
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.55
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.53
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.52
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.52
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.51
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.51
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.51
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.5
2qgz_A	308	Helicase loader, putative primosome component; str	95.49
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.48
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.46
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.46
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.45
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.44
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.43
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.43
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.43
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.42
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.41
3uc9_A	233	Increased recombination centers protein 6; rossman	95.41
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.41
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.39
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.37
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.36
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.34
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.33
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.32
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.31
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.3

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.7e-41  Score=243.80  Aligned_cols=163  Identities=31%  Similarity=0.542  Sum_probs=139.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+|+|.+|||||||+++|..+.|...+.+|.+ +.....+..++..+.++||||+|+++|..+++.++++++++++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            569999999999999999999999999999999985 4556677788889999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++++|..+ ..|+..+.... ++.|++|||||+|+.+.+.          ++.++++++++.+++ +|++|||++
T Consensus        92 v~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAkt  159 (216)
T 4dkx_A           92 VYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKA  159 (216)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred             EeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCCC
Confidence            9999999999999 77877776654 7899999999999987655          899999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.||+++|++|++.+..
T Consensus       160 g~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          160 GYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             TBSHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=5e-39  Score=230.84  Aligned_cols=195  Identities=78%  Similarity=1.249  Sum_probs=153.4

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+....++|+++|.+|+|||||+++|..+.+...+.+|....+...+.+++..+.+++|||||++.+..++..+++++|+
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            66778899999999999999999999999988888888877777777788888999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +++|||+++++++..+...|+..+....++.|+++|+||+|+.+.......  ....+..+++.++++.++..+++++||
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999855899999888789999999999999765431100  112347788899999998669999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhhh----hhhccccccccC
Q 029215          161 KTQQNVKAVFDAAIKVVLQPPKQKK----KKKKSHRACSIL  197 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~~~----~~~~~~~~c~~~  197 (197)
                      ++|.|++++|+++++.+.+.+.++.    ++++++.+|+|+
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~  202 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA  202 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC---------------------
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence            9999999999999999987765543    233334468774

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.4e-37  Score=217.90  Aligned_cols=181  Identities=34%  Similarity=0.580  Sum_probs=148.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +..++|+++|.+|||||||+++|.++.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999988888888877777788889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++..+ ..|...+....  ++.|+++|+||+|+.+..           +..+++..+++.++. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999998 77877776654  589999999999997533           577888999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhh-----hhhhccccccccC
Q 029215          162 TQQNVKAVFDAAIKVVLQPPKQK-----KKKKKSHRACSIL  197 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~-----~~~~~~~~~c~~~  197 (197)
                      +|.|++++|+++.+.+.....+.     +++++++.+|+||
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            99999999999999987654333     2344555568775

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=220.73  Aligned_cols=181  Identities=27%  Similarity=0.485  Sum_probs=143.4

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |...+.+||+|+|.+|||||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            45567899999999999999999999999998888888877776666667777899999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+...          +...++..+++.++. +++++
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  166 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES  166 (201)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999998 78888777654  5899999999999976554          778889999999998 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL  197 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      ||++|.|++++|++|.+.+.+....    .+++++|++|
T Consensus       167 Sa~~~~~v~~l~~~l~~~i~~~~~~----~~~~~~c~l~  201 (201)
T 3oes_A          167 SARENQLTQGIFTKVIQEIARVENS----YGQERRCHLM  201 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             eCCCCCCHHHHHHHHHHHHHhhhhh----hccccccccC
Confidence            9999999999999999998766533    2334458876

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.7e-36  Score=212.44  Aligned_cols=172  Identities=29%  Similarity=0.424  Sum_probs=150.8

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |...+.++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|+
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            67778999999999999999999999999888888888877777788889999999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+...          +..++++.+++.++. +++++
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES  148 (181)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence            9999999999999998 77877776554  4899999999999976554          788999999999998 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      ||++|.|++++|+++++.+...+...
T Consensus       149 Sa~~~~~v~~l~~~l~~~~~~~~~~~  174 (181)
T 3t5g_A          149 SAKENQTAVDVFRRIILEAEKMDGAC  174 (181)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTC----
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999998776443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=3.7e-36  Score=213.02  Aligned_cols=172  Identities=42%  Similarity=0.808  Sum_probs=153.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.+||+++|.+|+|||||+++|..+.+...+.+|....+...+..++..+.+++|||||++.+..++..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            34679999999999999999999999999888888888887778888999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+.+..        .+.+..+++..+++.++..+++++||++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999997688998888888899999999999997531        1237788999999999985599999999


Q ss_pred             CCCHHHHHHHHHHHHcCCch
Q 029215          163 QQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~  182 (197)
                      |.|++++|+++.+.+..++.
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=217.07  Aligned_cols=165  Identities=31%  Similarity=0.551  Sum_probs=147.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+|+|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++.+..++..+++.+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            35799999999999999999999999988888888877777778888888999999999999999988888999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++.+++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..+++..+++.++. +++++||+
T Consensus        92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (206)
T 2bov_A           92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  159 (206)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence            9999999999998 78887777765  3899999999999976543          678889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|++.+...
T Consensus       160 ~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.2e-35  Score=208.69  Aligned_cols=181  Identities=64%  Similarity=1.059  Sum_probs=153.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999999988888888877777777888999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++......|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            9999999999998557988888877799999999999997642100  00011233677888999999986689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhh
Q 029215          162 TQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      +|.|++++|+++.+.+.+++..+
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~k  185 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPPPVK  185 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCCC--
T ss_pred             CccCHHHHHHHHHHHHhcccccC
Confidence            99999999999999998776443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-35  Score=210.02  Aligned_cols=177  Identities=53%  Similarity=1.004  Sum_probs=151.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|.+|+|||||+++|..+.+...+.+|....+...+..++..+.+++||+||++++..++..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            46799999999999999999999999888888888877777777778888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++.++++.++..+++++||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            9999999999998558988888877899999999999997642110  11112234678899999999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++++.+..+
T Consensus       176 ~g~gi~~l~~~l~~~i~~p  194 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILTP  194 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999988653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=9.2e-37  Score=213.78  Aligned_cols=180  Identities=93%  Similarity=1.453  Sum_probs=135.0

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+..+.++|+++|.+|+|||||++++..+.+...+.+|....+...+..++..+.+++|||||++.+..++..+++++|+
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            56778899999999999999999999999888888888766655555566777889999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +++|||++++.++..+...|+..+....++.|+++|+||+|+.+.............+..+++..+++.++..+++++||
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999985579988888777899999999999976543111112223357788899999998769999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 029215          161 KTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++|.|++++|+++.+.+.++
T Consensus       163 ~~~~gi~~l~~~l~~~i~~~  182 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQP  182 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999988753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=8.4e-36  Score=214.44  Aligned_cols=180  Identities=34%  Similarity=0.643  Sum_probs=150.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+|+|.+|||||||+++|..+.+...+.+|....+...+..++..+.+++|||+|++.+..++..+++++|++++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            35799999999999999999999999998888888877777777788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++......|+..+....++.|+++|+||+|+.++....  ......+.+..+++..+++.+++.+++++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            9999999999995589999998888899999999999997631000  00011234788899999999998789999999


Q ss_pred             CCCC-HHHHHHHHHHHHcCCchh
Q 029215          162 TQQN-VKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       162 ~~~~-i~~~~~~i~~~~~~~~~~  183 (197)
                      +|.| ++++|+++.+.+..+...
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC----
T ss_pred             CCcccHHHHHHHHHHHHhccCcC
Confidence            9998 999999999999876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=211.38  Aligned_cols=179  Identities=51%  Similarity=0.886  Sum_probs=143.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ....++|+++|.+|||||||+++|..+.+...+.+|+...+...+..++..+.+++|||||++.+..++..++.++|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            34679999999999999999999999888888888887777777888888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++.++..+++++||
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            99999999999998557988888877899999999999997532100  0001123367788999999998768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.|++++|+++.+.+.+++
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999886543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.8e-35  Score=207.85  Aligned_cols=177  Identities=35%  Similarity=0.709  Sum_probs=149.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +...++|+++|++|||||||+++|..+.+...+.+|....+...+..++..+.+++|||||++.|..++..+++++|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45689999999999999999999999998888888887766667777888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++.++++.++..+++++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999988678888888877899999999999997531100  0111223477889999999988559999999


Q ss_pred             C-CCCCHHHHHHHHHHHHcC
Q 029215          161 K-TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~-~~~~i~~~~~~i~~~~~~  179 (197)
                      + ++.|++++|+++.+.+.+
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998865

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.6e-36  Score=213.12  Aligned_cols=182  Identities=26%  Similarity=0.474  Sum_probs=143.1

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ....++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            45679999999999999999999999988777777776666666777888899999999999999988888899999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      +|||++++.++... ..|+..+....   ++.|+++|+||+|+.+..           +..+++..++..++. +++++|
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S  151 (199)
T 2gf0_A           85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETS  151 (199)
T ss_dssp             EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEe
Confidence            99999999999887 55655554432   478999999999997532           567788889999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCchh----------hhhhhccccccccC
Q 029215          160 SKTQQNVKAVFDAAIKVVLQPPKQ----------KKKKKKSHRACSIL  197 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~~~----------~~~~~~~~~~c~~~  197 (197)
                      |++|.|++++|++|.+.+..++..          .+.+++++++|++|
T Consensus       152 a~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~C~~~  199 (199)
T 2gf0_A          152 AKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM  199 (199)
T ss_dssp             TTTTBSHHHHHHHHHHHCSSSCEECC----------------------
T ss_pred             cCCCCCHHHHHHHHHHHHhhhhccccccccccccCccccCCCCceeeC
Confidence            999999999999999988765321          11223445669886

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-35  Score=204.29  Aligned_cols=169  Identities=32%  Similarity=0.561  Sum_probs=146.5

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+++|.+|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            34679999999999999999999999888766666664 44456677888889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (181)
T 3tw8_B           86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK  153 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            999999999999998 789888888878999999999999976554          677888999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchh
Q 029215          162 TQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                      +|.|++++|+++.+.+.+.+.+
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998765443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=207.32  Aligned_cols=164  Identities=24%  Similarity=0.425  Sum_probs=141.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.+||+++|.+|||||||+++|..+.+...+.+|....+...+..++..+.+++|||||++.+..+ ..+++++|+++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            45679999999999999999999999998888888887777677778888899999999999988875 56888999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|||+++++++..+ ..|+..+....    ++.|+++|+||+|+...+.          +..+++.++++.++. +++++
T Consensus        97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~  164 (187)
T 3c5c_A           97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFEV  164 (187)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEEE
Confidence            99999999999998 78887776653    5899999999999976544          778899999999998 99999


Q ss_pred             cc-CCCCCHHHHHHHHHHHHcC
Q 029215          159 SS-KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       159 Sa-~~~~~i~~~~~~i~~~~~~  179 (197)
                      || ++|.|++++|+++++.+.+
T Consensus       165 Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          165 SACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CSSSCSHHHHHHHHHHHHHHHC
T ss_pred             eecCccccHHHHHHHHHHHHhh
Confidence            99 8999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.3e-35  Score=208.18  Aligned_cols=167  Identities=28%  Similarity=0.578  Sum_probs=117.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|.+|||||||+++|..+.+...+.++.... ....+.+++..+.+++|||||++.+..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            457999999999999999999999888776666666433 3456667888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..++++++++.++. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  153 (183)
T 2fu5_C           86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  153 (183)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999988 77888887764 5899999999999976543          678889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 029215          162 TQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +|.|++++|+++.+.+.++..
T Consensus       154 ~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=4e-35  Score=210.89  Aligned_cols=179  Identities=44%  Similarity=0.851  Sum_probs=131.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            35799999999999999999999998887778888877777777888988999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++.++..+++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            9999999999998558998888877899999999999997653210  00011224677888999999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 029215          162 TQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +|.|++++|+++.+.+.+.+.
T Consensus       192 ~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999876543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=6.9e-35  Score=204.52  Aligned_cols=164  Identities=34%  Similarity=0.542  Sum_probs=146.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|+|||||+++|..+.+...+.++....+......++..+.+++|||||++.+..++..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999999988888888877777788889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++..+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..++++++++.++. +++++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  163 (183)
T 3kkq_A           96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK  163 (183)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence            9999999999988 67777665532  5899999999999976554          788899999999997 99999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 029215          162 -TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 -~~~~i~~~~~~i~~~~~~  179 (197)
                       ++.|++++|+++.+.+.+
T Consensus       164 ~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          164 DPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SSCBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence             999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.8e-34  Score=199.94  Aligned_cols=165  Identities=29%  Similarity=0.597  Sum_probs=136.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+++|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45689999999999999999999999988777777764433 45666778889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++.++++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            999999999999988 78877776654 5899999999999976543          677888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|.|++++|+++.+.+.+
T Consensus       151 ~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=7e-35  Score=208.30  Aligned_cols=176  Identities=35%  Similarity=0.713  Sum_probs=148.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|||||||+++|..+.+...+.+|....+...+.+++..+.+++|||||++.|..++..+++++|++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            46799999999999999999999999988888888876666667778888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..++++++++.++..+++++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            9999999999988678888888877899999999999997531100  00112234778889999999885599999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 029215          162 -TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 -~~~~i~~~~~~i~~~~~~  179 (197)
                       ++.|++++|+++++.+.+
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.2e-34  Score=203.77  Aligned_cols=165  Identities=23%  Similarity=0.350  Sum_probs=141.0

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+.+.+||+++|.+|||||||++++..+.+...+.++. ..+...+.+++..+.+++|||+|++.+.     +++++|++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            34578999999999999999999999999887777774 4455778889999999999999998877     66779999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+....        .+.+..+++.++++.++..+++++|
T Consensus        90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S  160 (184)
T 3ihw_A           90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC  160 (184)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence            999999999999998 77988887764  589999999999995321        1237888999999999855999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCc
Q 029215          160 SKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      |++|.|++++|+++++.+.+.+
T Consensus       161 a~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          161 ATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999886543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=3.1e-34  Score=204.32  Aligned_cols=176  Identities=49%  Similarity=0.884  Sum_probs=150.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            35799999999999999999999999888888888776666667788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++......|...+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            9999999999988678888888877899999999999997652110  01111234677889999999987789999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      +|.|++++|++|.+.+.+
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-34  Score=205.55  Aligned_cols=178  Identities=48%  Similarity=0.863  Sum_probs=145.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            45789999999999999999999999888777788776666667788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++......|+..+....++.|+++|+||+|+.......  ......+.+..+++..++...+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK  182 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence            9999999999988678888888877899999999999997642110  00011123677888899999887789999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +|.|++++|++|.+.+.+++
T Consensus       183 ~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          183 TKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=6.8e-35  Score=208.22  Aligned_cols=174  Identities=64%  Similarity=1.078  Sum_probs=148.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46799999999999999999999999998888888887777788888888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++......|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++.++..+++++||+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence            9999999999998558999998888899999999999997653211  01112233677889999999998789999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029215          162 TQQNVKAVFDAAIKVV  177 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~  177 (197)
                      +|.|++++|+++.+.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998865

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1e-34  Score=200.46  Aligned_cols=163  Identities=31%  Similarity=0.563  Sum_probs=142.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            56999999999999999999999998888888888777777777888889999999999999998888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||+++++++... ..|+..+....  .+.|+++|+||+|+.+...          +..++++.+++.++. +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 77877776654  3899999999999976543          678889999999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.|++++|+++.+.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.5e-34  Score=199.69  Aligned_cols=163  Identities=29%  Similarity=0.538  Sum_probs=142.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++||+||++.+..++..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999998888888888777776777788889999999999999999988899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++.++... ..|+..+...  .++.|+++|+||+|+.+.+.          +..+++..+++.++..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999988 6677666554  25899999999999976543          6778889999988444999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029215          163 QQNVKAVFDAAIKVVL  178 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (197)
                      |.|++++|+++.+.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=206.48  Aligned_cols=165  Identities=30%  Similarity=0.580  Sum_probs=144.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|||||||+++|..+.+...+.++.. +.....+.+++..+.+++|||||++.+..++..+++++|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999988777777764 444556778888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..++++.+++..+. +++++||+
T Consensus       104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  171 (201)
T 2ew1_A          104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK  171 (201)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 78888887765 5899999999999976543          677888899998887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++.+.+...
T Consensus       172 ~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=4.5e-34  Score=204.09  Aligned_cols=165  Identities=30%  Similarity=0.606  Sum_probs=144.7

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+..++|+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            34579999999999999999999999988777777765443 45677788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||
T Consensus        85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  152 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSA  152 (206)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 77888887765 5899999999999976544          677888999999987 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|.|++++|+++.+.+.+
T Consensus       153 ~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          153 LDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=4e-34  Score=200.13  Aligned_cols=166  Identities=33%  Similarity=0.562  Sum_probs=143.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+++|.+|+|||||++++..+.+...+.++.... ....+..++..+.+++||+||++.+...+..+++++|+++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            457999999999999999999999998877766666433 3456667888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++... ..|+..+.... ++.|+++|+||+|+.+...          +..++++.+++..+. +++++||+
T Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  157 (181)
T 2efe_B           90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK  157 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence            99999999999988 78887777765 6899999999999976544          678889999999987 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +|.|++++|++|.+.+...+
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          158 TATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SCTTHHHHHHHHHHTCC---
T ss_pred             CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999887654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=9.3e-35  Score=203.02  Aligned_cols=166  Identities=22%  Similarity=0.311  Sum_probs=137.3

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |...+.+||+++|.+|||||||+++|..+.+.. +.+|....+...+.+++..+.+++|||||++.     ..+++++|+
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            667788999999999999999999999998876 67777766777788888889999999999986     345678999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhh---hC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           81 FILAFSLISKASYENVAKKWIPELRH---YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +++|||+++++++..+ ..|+..+..   .. ++.|+++|+||+|+....        .+.+..+++.++++..+..+++
T Consensus        76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence            9999999999999998 666544433   22 589999999999995321        1236788889999887544999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++||++|.|++++|+++++.+.+.+
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.4e-34  Score=198.83  Aligned_cols=165  Identities=35%  Similarity=0.552  Sum_probs=143.5

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+..++|+++|++|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++++|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35689999999999999999999999988777777764 34456677788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      ++|||++++.++... ..|+..+....++.|+++|+||+|+.+...          +..++++.+++..+. +++++||+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence            999999999999988 778877766657899999999999976543          667888999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      ++.|++++|+++.+.+.+
T Consensus       150 ~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=203.36  Aligned_cols=167  Identities=31%  Similarity=0.606  Sum_probs=146.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+|+|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            3579999999999999999999999988777777664 444566778888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++..++. +++++||+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  161 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  161 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence            99999999999998 77888887765 5899999999999977654          677889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 029215          162 TQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +|.|++++|+++.+.+.++..
T Consensus       162 ~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=200.68  Aligned_cols=164  Identities=24%  Similarity=0.374  Sum_probs=129.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--ccccccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~~~~~   81 (197)
                      .+.++|+++|++|||||||+++|.+..+...+.....+.+...+.+++..+.+++|||||++.  +..+...+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            467999999999999999999999887755444333344556677888889999999999987  566667788899999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++|||++++.++..+ ..|...+....  ++.|+++|+||+|+.+.+.          +..++++.++..++. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999998 67877776653  5899999999999976544          677888889999987 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 029215          160 SKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~  179 (197)
                      |++|.|++++|++|.+.+..
T Consensus       150 a~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.6e-34  Score=198.22  Aligned_cols=164  Identities=31%  Similarity=0.551  Sum_probs=141.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||+++|..+.+...+.++....+ ...+..++..+.+++||+||++.+...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4679999999999999999999999888777666664433 456667888899999999999999999989999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++... ..|+..+.... ++.|+++|+||+|+.+...          +..+++.+++...+. +++++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  151 (170)
T 1r2q_A           84 VVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAK  151 (170)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999988 77877776654 6899999999999976443          667888899998887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      +|.|++++|++|.+.+.+
T Consensus       152 ~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          152 TSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TCTTHHHHHHHHHHTSCC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=5.5e-34  Score=201.06  Aligned_cols=164  Identities=32%  Similarity=0.637  Sum_probs=143.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +..++|+|+|.+|+|||||+++|..+.+...+.++....+ ...+...+..+.+++|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            4579999999999999999999999988777666664333 445667788899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++... ..|+..+.... ++.|+++|+||+|+.+...          +..++++++++.++. +++++||+
T Consensus       100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  167 (189)
T 2gf9_A          100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAK  167 (189)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999988 77888887765 6899999999999976543          667888999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      +|.|++++|++|.+.+.+
T Consensus       168 ~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          168 ENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.4e-34  Score=202.34  Aligned_cols=167  Identities=31%  Similarity=0.535  Sum_probs=145.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ....++|+++|.+|+|||||+++|.++.+...+.++....+...+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            34679999999999999999999999998888888887777777888888899999999999999999888899999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +|||++++.++..+ ..|+..+ .... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  153 (181)
T 2fn4_A           86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  153 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            99999999999988 6676665 4333 5899999999999976544          677888899988887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.|++++|++|.+.+.+..
T Consensus       154 ~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999886543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-34  Score=206.44  Aligned_cols=167  Identities=30%  Similarity=0.524  Sum_probs=137.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+|+|.+|||||||+++|..+.+...+.++....+ ...+.+++..+.+++|||||++.+..++..+++.+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            4579999999999999999999999988777777765443 456777888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..+++..+. +++++||+
T Consensus        91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  158 (223)
T 3cpj_B           91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSAL  158 (223)
T ss_dssp             EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887765 5899999999999976543          677888999999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 029215          162 TQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +|.|++++|++|++.+.+...
T Consensus       159 ~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          159 NSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             -CCCHHHHHHHHHHHHTTCC-
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=9.9e-35  Score=206.91  Aligned_cols=166  Identities=30%  Similarity=0.517  Sum_probs=138.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+.+|.... ....+.+++..+.+++|||||++.+..++..+++++|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            457999999999999999999999998877777776433 3566777888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++++++..+..+++++||+
T Consensus       107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  175 (201)
T 2hup_A          107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK  175 (201)
T ss_dssp             EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence            99999999999988 78888887765 6899999999999976543          678889999999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.++
T Consensus       176 ~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          176 DSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.3e-34  Score=203.36  Aligned_cols=165  Identities=28%  Similarity=0.553  Sum_probs=140.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+|+|.+|+|||||+++|..+.+...+.++.... ....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            457999999999999999999999998877666665433 3456777888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..++++.+++..+. +++++||+
T Consensus        99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  166 (191)
T 2a5j_A           99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK  166 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 77888777664 6899999999999976543          677888999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.++
T Consensus       167 ~~~gi~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYRK  185 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.2e-34  Score=199.51  Aligned_cols=165  Identities=30%  Similarity=0.566  Sum_probs=143.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+|+|.+|+|||||+++|..+.+...+.++.... ....+..++..+.+.+|||||++.+...+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            3467999999999999999999999998877777776543 345666788889999999999999999888899999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..++++++++.++. +++++||
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  159 (179)
T 1z0f_A           92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA  159 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999988 78888777765 6899999999999976543          677889999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|.|++++|+++.+.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=3.2e-34  Score=198.01  Aligned_cols=161  Identities=24%  Similarity=0.388  Sum_probs=119.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|+|||||++++.+..+. ...++....+...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            589999999999999999999866543 2334444455566778899999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++++... ..|...+....  ++.|+++|+||+|+.+...          +..+++..++...+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T 3q72_A           81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  148 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence            99999999998 67776666543  5899999999999987654          788889999999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .|++++|+++.+.+..
T Consensus       149 ~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          149 HNVQALFEGVVRQIRL  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-34  Score=197.39  Aligned_cols=166  Identities=31%  Similarity=0.537  Sum_probs=142.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.++|+++|++|+|||||++++..+.+...+.++.... ....+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999998877777776443 34566778888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.++... ..|+..+.... ++.|+++|+||+|+.+...       ...+..+++..+++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999988 77887777665 6899999999999976421       123677888899999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.|++++|+++.+.+.+
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CTTHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-33  Score=197.32  Aligned_cols=166  Identities=34%  Similarity=0.635  Sum_probs=134.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +..++|+++|.+|+|||||+++|..+.+. ..+.++....+ ...+..++..+.+++|||||++.+...+..+++++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            46799999999999999999999998874 35556654333 44557788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..+++.++. +++++||
T Consensus        88 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  155 (180)
T 2g6b_A           88 LLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSA  155 (180)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999988 78888877765 5899999999999976544          677888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.|++++|+++.+.+.++.
T Consensus       156 ~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          156 KTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTCTTHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999987654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.3e-33  Score=195.42  Aligned_cols=163  Identities=25%  Similarity=0.540  Sum_probs=142.9

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|++|+|||||++++.++.+...+.++.+..+ ...+...+..+.+.+|||||++.+...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999988777777765433 456667888899999999999999999988999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++... ..|+..+.... +..|+++|+||+|+.+...          +..+++..+++..+. +++++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  151 (170)
T 1z0j_A           84 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAK  151 (170)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 78888887764 6899999999999976543          677888899999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029215          162 TQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (197)
                      +|.|++++|++|.+.+.
T Consensus       152 ~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          152 NAININELFIEISRRIP  168 (170)
T ss_dssp             TTBSHHHHHHHHHHHCC
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.4e-34  Score=201.90  Aligned_cols=168  Identities=27%  Similarity=0.411  Sum_probs=142.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECC-eEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      ..+.++|+++|.+|||||||+++|..+.+...+.+|.. +.....+..++ ..+.+++|||||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45689999999999999999999999887666666663 44455666665 67899999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +++|||+++++++..+ ..|+..+....   .+.| +++|+||+|+.+...          +..+++..+++..+. +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence            9999999999999888 78877776643   2556 799999999976543          677888999999997 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCch
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      ++||++|.|++++|++|.+.+...+.
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999877653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-34  Score=204.78  Aligned_cols=166  Identities=30%  Similarity=0.497  Sum_probs=143.0

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |...+.++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++||+||++. ...+..+++.+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345678999999999999999999999999888888888777777777888889999999999988 6677778889999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++
T Consensus       102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  169 (196)
T 2atv_A          102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC  169 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999988 77777776643  5899999999999976543          678889999999987 99999


Q ss_pred             ccCCCC-CHHHHHHHHHHHHcC
Q 029215          159 SSKTQQ-NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       159 Sa~~~~-~i~~~~~~i~~~~~~  179 (197)
                      ||++|. |++++|+++++.+.+
T Consensus       170 Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          170 SACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             CTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCcCHHHHHHHHHHHHHh
Confidence            999999 999999999998864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.2e-34  Score=202.32  Aligned_cols=163  Identities=31%  Similarity=0.564  Sum_probs=145.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   96 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence            57999999999999999999999998888888888777777778888889999999999999999888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||+++++++... ..|+..+....  .+.|+++|+||+|+.+...          +..++++.+++.++. +++++||++
T Consensus        97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  164 (187)
T 2a9k_A           97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKT  164 (187)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999988 77777776655  3899999999999976543          677888999999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      +.|++++|++|.+.+.+
T Consensus       165 ~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          165 RANVDKVFFDLMREIRA  181 (187)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=6.3e-34  Score=200.06  Aligned_cols=165  Identities=28%  Similarity=0.512  Sum_probs=143.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+|+|++|||||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999988777777765 344556777888889999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....          +..+++.++++..+. +++++||+
T Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  155 (186)
T 2bme_A           88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  155 (186)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999988 77877776654 6899999999999976443          677888899999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++.+.+.++
T Consensus       156 ~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=5.1e-34  Score=197.53  Aligned_cols=163  Identities=24%  Similarity=0.386  Sum_probs=128.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccc-cccCCCCCCcEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL   83 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~i~   83 (197)
                      .+||+++|.+|||||||+++|.+..+.....++. .+.....+..++..+.+.+||+||++.+.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999998766544333333 455566677889899999999999998876 66667888999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++..+++..+. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence            9999999999998 77777776665  3899999999999976544          788899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++.+.+..+
T Consensus       150 ~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          150 LHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhc
Confidence            9999999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=201.35  Aligned_cols=165  Identities=29%  Similarity=0.611  Sum_probs=144.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+|+|.+|||||||+++|..+.+...+.++.... ....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            457999999999999999999999998877777776433 3455667888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..+++.++. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
T 1zbd_A           86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK  153 (203)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence            99999999999988 77888887765 5899999999999976544          677889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.++
T Consensus       154 ~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          154 DNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             TTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=4.6e-34  Score=197.02  Aligned_cols=162  Identities=30%  Similarity=0.578  Sum_probs=142.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|++|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999998888888887776677778888889999999999999998888889999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++.++... ..|...+....  .+.|+++|+||+|+.+...          +..+++..+++.++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999988 66666665543  5899999999999976543          677888899999987 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029215          163 QQNVKAVFDAAIKVVL  178 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (197)
                      |.|++++|+++.+.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.8e-34  Score=200.83  Aligned_cols=166  Identities=26%  Similarity=0.525  Sum_probs=142.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+...+..+.+++|||||++.+...+..+++++|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            4579999999999999999999999988777777765443 445566777889999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++++++.++. +++++||+
T Consensus       101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  168 (192)
T 2fg5_A          101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK  168 (192)
T ss_dssp             EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 88888887765 5899999999999975443          677889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 029215          162 TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +|.|++++|++|.+.+.+.+
T Consensus       169 ~~~gi~~l~~~l~~~i~~~~  188 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPPLD  188 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC---
T ss_pred             CCcCHHHHHHHHHHHHHhhC
Confidence            99999999999999876543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=6.8e-34  Score=196.90  Aligned_cols=163  Identities=32%  Similarity=0.642  Sum_probs=136.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++|+++|++|+|||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999988777667665433 4556667778899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+... .          +..+++.++++.++. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------VTADQGEALAKELGI-PFIESSAKN  148 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-C----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-c----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999888 78888777765 58999999999999432 2          567888899999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|+++.+.+.++
T Consensus       149 ~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=199.97  Aligned_cols=165  Identities=30%  Similarity=0.503  Sum_probs=142.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+.++.+. .....+...+..+.+.+|||||++.+..++..+++++|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45799999999999999999999999887776666543 33456667888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.....          +..++++.++...+. +++++||+
T Consensus       103 ~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  170 (193)
T 2oil_A          103 LVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSAL  170 (193)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 77887777654 5899999999999976543          677888999999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.++
T Consensus       171 ~~~gi~~l~~~l~~~i~~~  189 (193)
T 2oil_A          171 DSTNVELAFETVLKEIFAK  189 (193)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=3.5e-33  Score=197.01  Aligned_cols=163  Identities=34%  Similarity=0.565  Sum_probs=134.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   99 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence            56999999999999999999999998887778887777777778888889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||+++..++..+ ..|+..+....  .+.|+++|+||+|+....           +..++++++++.++. +++++||++
T Consensus       100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  166 (190)
T 3con_A          100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAKT  166 (190)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            999999999988 78877776654  389999999999997622           567888999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|++|.+.+.+.
T Consensus       167 ~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          167 RQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=4.1e-33  Score=194.33  Aligned_cols=166  Identities=34%  Similarity=0.627  Sum_probs=138.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ....++|+++|++|+|||||++++..+.+...+.++... .....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            346799999999999999999999998887777777643 3456677888889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.+. .          +..+++.++++.....+++
T Consensus        84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~  151 (177)
T 1wms_A           84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISER-Q----------VSTEEAQAWCRDNGDYPYF  151 (177)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-S----------SCHHHHHHHHHHTTCCCEE
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCccccc-c----------cCHHHHHHHHHhcCCceEE
Confidence            999999999999988 77777765543     57899999999999732 2          6778888888855444999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|+++.+.+.+.
T Consensus       152 ~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          152 ETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.2e-34  Score=203.49  Aligned_cols=165  Identities=30%  Similarity=0.525  Sum_probs=134.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+|+|.+|||||||+++|..+.+...+.++... .....+..++..+.+++|||||++.+..++..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998887776676643 33556677888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....          +...++..+++..+. +++++||+
T Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA~  170 (200)
T 2o52_A          103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL  170 (200)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 78877776654 6899999999999976543          667888899999987 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++.+.+.++
T Consensus       171 ~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          171 TGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-34  Score=197.33  Aligned_cols=164  Identities=27%  Similarity=0.503  Sum_probs=140.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            56899999999999999999999988877777777666666677788888999999999999998888888999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      ||++++.++... ..|+..+....   ++.|+++|+||+|+.+...          +...++..++..++. +++++||+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  149 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  149 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence            999999999887 66666565532   5899999999999976544          667788888888887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.++
T Consensus       150 ~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          150 LNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             TTBSHHHHHHHHHHTCCSS
T ss_pred             CCcCHHHHHHHHHHHHhhh
Confidence            9999999999999877554

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=201.74  Aligned_cols=171  Identities=30%  Similarity=0.480  Sum_probs=135.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+|+|.+|+|||||+++|..+.+...+.++.+. .....+.+++..+.+++|||||++.+..++..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            346799999999999999999999999887777676653 3345677788889999999999999998888889999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....    ....+.+..+++..+++..+. +++++||
T Consensus       105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~SA  178 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSA  178 (199)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence            999999999999998 78888887765 5899999999999963210    001223677888999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029215          161 KTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|.|++++|+++++.+.+
T Consensus       179 ~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.4e-33  Score=199.39  Aligned_cols=165  Identities=32%  Similarity=0.566  Sum_probs=141.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee--EEEEECCe---------EEEEEEEEcCCccccccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~D~~G~~~~~~~~~   72 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+.++....+.  ..+..++.         .+.+++|||||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            35799999999999999999999998887777777654443  34445554         78999999999999999999


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI  150 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .+++++|++++|||++++.++..+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++++++...
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~  157 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY  157 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence            999999999999999999999988 78888777665  5899999999999976543          6778889999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          151 GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +. +++++||++|.|++++|++|.+.+.++
T Consensus       158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          158 GI-PYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            97 999999999999999999999998654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-33  Score=201.71  Aligned_cols=163  Identities=24%  Similarity=0.436  Sum_probs=133.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc-ccccccCCCCCCcE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~   80 (197)
                      ...+||+|+|.+|||||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+|||+|++. +..+...+++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            35699999999999999999999864  3444444444455566677889889999999999876 55566778889999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||++++++|..+ ..|...+....  +++|+++|+||+|+.+.+.          +..++++.++..+++ +++++
T Consensus       115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~  182 (211)
T 2g3y_A          115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET  182 (211)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 67776665432  5899999999999976443          677788888889987 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHc
Q 029215          159 SSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ||++|.|++++|+++++.+.
T Consensus       183 SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          183 SAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=6.4e-34  Score=201.84  Aligned_cols=166  Identities=25%  Similarity=0.412  Sum_probs=136.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC-ceeeceeEEEEECCeEEEEEEEEcCCcccccc-cccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~   81 (197)
                      ...++|+++|.+|||||||+++|.+......+.+ +..+.+...+.+++..+.+++|||+|++.+.. ++..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            4579999999999999999999975433222222 33444556677889899999999999987764 667778889999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++|||++++.+|..+ ..|+..+....  .+.|+++|+||+|+...+.          +..++++.+++.++. +++++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999998 77887777654  4899999999999976544          678889999999987 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCc
Q 029215          160 SKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      |++|.|++++|+++++.+..++
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999887544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.5e-33  Score=200.22  Aligned_cols=166  Identities=30%  Similarity=0.553  Sum_probs=139.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+|+|.+|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            4679999999999999999999999988777777763 444556667777889999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++++.++..+ ..|+..+....     ++.|+++|+||+|+... .          +..+++..++......++++
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~~  153 (207)
T 1vg8_A           86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-Q----------VATKRAQAWCYSKNNIPYFE  153 (207)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-C----------SCHHHHHHHHHHTTSCCEEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCccc-c----------cCHHHHHHHHHhcCCceEEE
Confidence            99999999999988 77776665543     47899999999999732 2          56778888888444348999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +||++|.|++++|++|.+.+.+.+
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          154 TSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999886543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=201.40  Aligned_cols=165  Identities=32%  Similarity=0.558  Sum_probs=135.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+|+|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4579999999999999999999999887766666663 444556777888899999999999999988888999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..++++.+++.....+++++||+
T Consensus       104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence            99999999999998 78888887766 4899999999999976543          677888889888633499999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      +|.|++++|++|.+.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.9e-33  Score=196.17  Aligned_cols=163  Identities=34%  Similarity=0.566  Sum_probs=141.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++|+|+|++|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+...+..+++++|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            469999999999999999999999888777777664 4455667788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.++... ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||++
T Consensus        93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (179)
T 2y8e_A           93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKA  160 (179)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            9999999999988 77777766554 5899999999999976543          677888889999987 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.|++++|++|.+.+.+
T Consensus       161 ~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          161 GYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TBSHHHHHHHHHHTCC-
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=4.5e-33  Score=198.25  Aligned_cols=165  Identities=28%  Similarity=0.498  Sum_probs=138.9

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeE--------------------------
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST--------------------------   53 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~--------------------------   53 (197)
                      |..++.++|+|+|++|+|||||+++|.+..+...+.++....+ ...+..++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            7778899999999999999999999999988777777764333 3344444433                          


Q ss_pred             -----------EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215           54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        54 -----------~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  122 (197)
                                 +.+.+|||||++.+...+..+++.+|++++|||++++.++..+ ..|+..+.... +.|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISS-NYIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHS-CCEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhC-CCcEEEEEECCC-
Confidence                       7899999999999999988999999999999999999999988 78887777654 499999999999 


Q ss_pred             cCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      .....          +..++++++++..+. +++++||++|.|++++|++|.+.+.+
T Consensus       159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33322          677889999999998 99999999999999999999988753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.6e-33  Score=197.12  Aligned_cols=168  Identities=30%  Similarity=0.574  Sum_probs=126.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      ..+.++|+++|++|+|||||++++..+.+...+.++.. +.....+..+ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            34689999999999999999999999988777777764 3334455555 556889999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +++|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.....         .+..+++.++++..+..++
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~  154 (182)
T 1ky3_A           85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPL  154 (182)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCE
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeE
Confidence            9999999999999988 77776665543     5899999999999954321         2567888888885544589


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +++||++|.|++++|+++.+.+.+.
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          155 FLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999988643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2e-34  Score=205.86  Aligned_cols=169  Identities=25%  Similarity=0.366  Sum_probs=110.4

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCcee-eceeEEEEECCe--EEEEEEEEcCCcccccccccCCCC
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYR   76 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~   76 (197)
                      .....++|+|+|.+|+|||||+++|.++  .+...+.+|.. +.....+.+++.  .+.+++|||||++.+..++..+++
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3456799999999999999999999998  77777777775 455666777776  789999999999999999999999


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC----CCCEEEEeecCCccC-CcccccCCCCCccccHHHHHHHHHHhC
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLDLRD-DKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ++|++++|||++++.++..+ ..|+..+....+    +.|+++|+||+|+.+ ...          +..+++..+++.++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~  164 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT  164 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred             hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence            99999999999999999998 788888877653    899999999999976 443          67889999999999


Q ss_pred             CCeEEEeccCC-CCCHHHHHHHHHHHHcCCch
Q 029215          152 SPAYIECSSKT-QQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       152 ~~~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~~  182 (197)
                      . +++++||++ |.|++++|++|.+.+.+...
T Consensus       165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          165 L-DFFDVSANPPGKDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             C-EEEECCC-------CHHHHHHHHHHHHHHH
T ss_pred             C-EEEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence            7 999999999 99999999999998875543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.7e-33  Score=197.54  Aligned_cols=163  Identities=29%  Similarity=0.524  Sum_probs=138.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCccccc-ccccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~   81 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+.++... .....+..++..+.+++|||||++.+. .++..+++++|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            45799999999999999999999999887777777643 345567778888999999999999888 7888889999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..++++.+++..+. +++++|
T Consensus        98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  165 (189)
T 1z06_A           98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS  165 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence            999999999999988 77887777664  5899999999999976543          677888999999997 999999


Q ss_pred             cCCC---CCHHHHHHHHHHHHc
Q 029215          160 SKTQ---QNVKAVFDAAIKVVL  178 (197)
Q Consensus       160 a~~~---~~i~~~~~~i~~~~~  178 (197)
                      |+++   .|++++|++|++.+.
T Consensus       166 a~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          166 AKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             SSSGGGGSCHHHHHHHHC----
T ss_pred             CCcCCcccCHHHHHHHHHHHHh
Confidence            9999   999999999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-32  Score=195.09  Aligned_cols=165  Identities=29%  Similarity=0.591  Sum_probs=143.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.++|+|+|.+|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            4699999999999999999999999887777777643 334566778888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+..           +..+++..+++..+. +++++||+
T Consensus        94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (195)
T 1x3s_A           94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  160 (195)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            9999999999988 78888887765  589999999999995422           567888899999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 029215          162 TQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      ++.|++++|++|.+.+.+.+.
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999887653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-34  Score=204.43  Aligned_cols=165  Identities=30%  Similarity=0.596  Sum_probs=144.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+|+|.+|||||||+++|..+.+...+.++.... ....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            357999999999999999999999988877776666433 3455666777789999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..++++.+++.++. +++++||+
T Consensus       101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  168 (191)
T 3dz8_A          101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK  168 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999988 77988888766 6899999999999976544          778889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++.+.+.++
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          169 ENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.5e-33  Score=190.94  Aligned_cols=161  Identities=34%  Similarity=0.578  Sum_probs=142.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+||+||++.+...+..++..+|++++||
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence            58999999999999999999999988877788877777777778888899999999999999888888889999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++..++... ..|+..+....  .+.|+++|+||+|+.+..           ...+++.++++.++. +++++||++|
T Consensus        83 d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T 2ce2_X           83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKTR  149 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCCC
Confidence            99999999988 77877776654  389999999999997632           567888899999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .|++++|+++.+.+.+
T Consensus       150 ~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          150 QGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.1e-33  Score=203.73  Aligned_cols=166  Identities=36%  Similarity=0.617  Sum_probs=140.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCe----------EEEEEEEEcCCccccccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~i~D~~G~~~~~~~~~   72 (197)
                      ++.++|+|+|.+|||||||+++|..+.+...+.++....+ ...+.+++.          .+.+++|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            4679999999999999999999999888766666654333 334555544          68899999999999998888


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI  150 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .+++.+|++++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..+++.++++.+
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~  171 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKY  171 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHHC
Confidence            999999999999999999999988 78888776654  5899999999999976543          6778899999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          151 GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +. +++++||+++.|++++|++|.+.+.++.
T Consensus       172 ~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          172 GI-PYFETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             TC-CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             CC-cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            97 8999999999999999999999887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=197.58  Aligned_cols=164  Identities=32%  Similarity=0.614  Sum_probs=140.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+|+|.+|+|||||+++|....+...+.++... .....+..++..+.+++|||||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            35699999999999999999999998887776676643 33456777888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.. ..          +..+++..++..++. +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-CC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-cc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 78888777765 4799999999999943 22          567788889999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.+.
T Consensus       165 ~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999987643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.5e-32  Score=194.34  Aligned_cols=165  Identities=24%  Similarity=0.441  Sum_probs=131.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh--CCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc-ccccccCCCCCCcE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~   80 (197)
                      ...+||+++|.+|||||||+++|.+  ..+...+.++..+.+...+.+++..+.+.+|||+|++. +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            4579999999999999999999985  33444444444455566677889889999999999876 55566777788999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||++++++|... ..|...+....  ++.|+++|+||+|+...+.          +..+++..++...+. +++++
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~  151 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET  151 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence            9999999999999988 77776666542  5899999999999975443          667788888888887 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ||++|.|++++|+++++.+...
T Consensus       152 SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          152 SAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999988543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2e-33  Score=199.08  Aligned_cols=165  Identities=23%  Similarity=0.272  Sum_probs=131.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCC-----------Cceeec-eeEEE-EECCeEEEEEEEEcCCcccccc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-----------PTVFDN-FSANV-VVDGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-----------~t~~~~-~~~~~-~~~~~~~~l~i~D~~G~~~~~~   69 (197)
                      .++.+||+++|.+|||||||++.+. +.+...+.           +|.... ....+ ..++..+.+++|||||++.+..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            4568999999999999999996554 44444432           233221 11222 3456778999999999999999


Q ss_pred             cccCCCCCCcEEEEEEeCC------CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215           70 LRPLSYRGADVFILAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG  143 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      ++..+++++|++++|||++      +.+++..+ ..|+..+....++.|+++|+||+|+.+.            +..+++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~  156 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMV  156 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHH
Confidence            9999999999999999999      55677776 6777777555579999999999999664            577888


Q ss_pred             HHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          144 EELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +++++..+..+++++||++|.|++++|+++.+.+.++.
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            99999888768999999999999999999999887544

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=7.7e-32  Score=205.39  Aligned_cols=176  Identities=63%  Similarity=1.078  Sum_probs=151.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..++|+++|.+|+|||||++++..+.+...+.+|+...+...+..++..+.+++|||||++.+...+..+++++|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            46899999999999999999999999988888888877777788899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            999999999998558888888877799999999999997542100  000112346788999999999876899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|+++.+.+.++
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.3e-32  Score=198.23  Aligned_cols=167  Identities=28%  Similarity=0.444  Sum_probs=137.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ...+||+|+|.+|||||||+++|.++.+...+.++..... ...... .+..+.+.+|||||++.+..++..++.++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            4679999999999999999999998887766666654333 233333 34458899999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  156 (218)
T 4djt_A           89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISA  156 (218)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEec
Confidence            999999999999998 78888777665 4699999999999976544          677888888888887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCch
Q 029215          161 KTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      ++|.|++++|+++.+.+.....
T Consensus       157 ~~g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          157 KTAHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TTTBTTTHHHHHHHHHHHCCTT
T ss_pred             CCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999877653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=203.81  Aligned_cols=165  Identities=32%  Similarity=0.620  Sum_probs=133.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+|+|.+|||||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            4579999999999999999999998887666556554 334556777888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++..++. +++++||+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~  178 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  178 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 78888887766 5899999999999976543          455567788888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.++
T Consensus       179 ~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             --HHHHHHHHHHTTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999877654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=4.8e-32  Score=192.36  Aligned_cols=167  Identities=16%  Similarity=0.142  Sum_probs=124.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .....+|+|+|.+|||||||+++|..+.+.. .+.+|...... .+...+  +.+++|||||++.+..++..+++++|++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            3467999999999999999999999998877 66777653322 233334  7888999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-HHHhC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-RKLIG  151 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  151 (197)
                      ++|||+++++++... ..|+..+....         ++.|+++|+||+|+.....       ...+........ ++..+
T Consensus        91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred             EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence            999999999999998 55655544331         2899999999999976521       000111111111 13345


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      . +++++||++|.|++++|++|.+.+.+..
T Consensus       163 ~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          163 F-VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             E-EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             e-EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            5 8999999999999999999999887554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=7.8e-33  Score=199.78  Aligned_cols=165  Identities=28%  Similarity=0.478  Sum_probs=140.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.+|||||||+++++.+.+...+.++.+ +........++..+.+++|||||++.+..++..+++++|+++
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            4579999999999999999999887766666666663 444556667888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||++++.++..+ ..|+..+....++.|+++|+||+|+.+...            ..+...+++..+. +++++||++
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~  158 (221)
T 3gj0_A           93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS  158 (221)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCCC
Confidence            99999999999998 789988888878999999999999976432            1244567777887 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCch
Q 029215          163 QQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~  182 (197)
                      |.|++++|++|.+.+...+.
T Consensus       159 ~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          159 NYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             TBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999876643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.6e-35  Score=208.19  Aligned_cols=174  Identities=64%  Similarity=1.076  Sum_probs=145.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+...+..+++++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            56899999999999999999999998888888888877776667777778899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++......|+..+....++.|+++|+||+|+.+......  .....+.+..+++..+++..+..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            99999999999885588888887767899999999999976432110  0111123566778888888886689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029215          162 TQQNVKAVFDAAIKVV  177 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~  177 (197)
                      +|.|++++|+++.+.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=3.9e-31  Score=187.87  Aligned_cols=157  Identities=19%  Similarity=0.257  Sum_probs=118.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++.++.+. .+.+|.... ...+..++  +.+++|||||++.+..++..+++++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999987763 345555433 34556676  788899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----------
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-----------  150 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (197)
                      |||+++++++... ..|+..+...  ..+.|+++|+||+|+...            +..+++.++....           
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence            9999999999988 6666555443  258999999999999652            4566666665532           


Q ss_pred             -----CCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          151 -----GSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       151 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                           ...+++++||++|.|++++|+++.+.+
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                 223799999999999999999998643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.8e-31  Score=186.16  Aligned_cols=163  Identities=15%  Similarity=0.216  Sum_probs=122.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||++++..+.+. .+.+|.+. ....+..++  +.+++|||||++++..++..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            56799999999999999999999988775 44555442 233444555  788899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (197)
                      |||+++++++... ..|+..+...  ..+.|+++|+||+|+...            ...+++.+...     ..+. +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~  155 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ  155 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCCc-EEE
Confidence            9999999999998 6666666544  258999999999999753            23344433332     2344 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      ++||++|.|++++|++|++.+.......
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred             EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999987765443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.3e-30  Score=183.12  Aligned_cols=159  Identities=17%  Similarity=0.238  Sum_probs=124.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++.++. ...+.+|.... ...+..++  +.+++|||||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            567999999999999999999999887 55566665422 23444555  778899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (197)
                      |||+++++++... ..|+..+...  .++.|+++|+||+|+.+..            ..++..+...     ..+. +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ  157 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence            9999999999988 5555544433  2589999999999997642            2233322221     2233 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|+++.+.+.++
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=6.6e-32  Score=185.98  Aligned_cols=155  Identities=14%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+.. +.+|... ....+...+  +.+++|||||++.+..++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887754 4455442 222333344  778899999999999888889999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-----HHHhCCCeEEEec
Q 029215           87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-----RKLIGSPAYIECS  159 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~S  159 (197)
                      +++++++... ..|+..+...  .++.|+++|+||+|+.+..            ..++....     ++..+. +++++|
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S  142 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATC  142 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECB
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEcc
Confidence            9999999988 5666555432  2589999999999996542            12222111     111233 789999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 029215          160 SKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~  179 (197)
                      |++|.|++++|+++.+.+.+
T Consensus       143 a~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             cCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.3e-30  Score=184.06  Aligned_cols=156  Identities=15%  Similarity=0.256  Sum_probs=122.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++..+.+. .+.+|.... ...+..++  +.+++|||||++.+..++..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999998764 345555432 44566676  788899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----------
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-----------  150 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (197)
                      |||+++++++... ..|+..+...  .++.|+++|+||+|+...            +..+++.+.....           
T Consensus        97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T 1m2o_B           97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ  163 (190)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred             EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence            9999999999998 5666555432  258999999999999752            4455555544321           


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          151 GSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ...+++++||++|.|++++|+++.+.
T Consensus       164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          164 RPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            22379999999999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=7.8e-31  Score=181.70  Aligned_cols=164  Identities=14%  Similarity=0.192  Sum_probs=122.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++..+.+.. +.+|.... ...+..++  +.+++|||||++.+...+..+++++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            457999999999999999999999888743 44454322 23444554  678899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||+++++++... ..|+..+ .... ++.|+++|+||+|+.+...       ...+........+...+. +++++||+
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  151 (171)
T 1upt_A           81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT  151 (171)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence            9999999999888 4554444 3322 5899999999999976421       000111111111223344 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.|++++|+++.+.+.++
T Consensus       152 ~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          152 KGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhc
Confidence            9999999999999988653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=9.9e-31  Score=184.51  Aligned_cols=159  Identities=16%  Similarity=0.227  Sum_probs=124.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||+++|.++. +...+.+|.. .....+..++  +.+.+|||||++.+...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            457999999999999999999999877 4555556554 2333444555  67889999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH--H---hCCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK--L---IGSP  153 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~  153 (197)
                      +|||++++.++... ..|+..+....    .+.|+++|+||+|+...            ...+++.+...  .   .+. 
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-  161 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW-  161 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence            99999999999988 55655554432    48999999999999653            34455555543  1   233 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++++||++|.|++++|++|.+.+.+
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999988743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=9e-31  Score=184.49  Aligned_cols=160  Identities=21%  Similarity=0.279  Sum_probs=123.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+.+|....+. .+...+  +.+++|||||++.+..++..+++++|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            45799999999999999999999999887777777654443 233444  778899999999999999889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (197)
                      |||+++++++... ..|+..+... . .+.|+++|+||+|+....            ..++......     ..+. +++
T Consensus        97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  162 (188)
T 1zd9_A           97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCY  162 (188)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEE
Confidence            9999999999988 5555544432 2 589999999999997542            1222211111     1233 789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|++|.+.+.++
T Consensus       163 ~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          163 SISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.3e-31  Score=189.51  Aligned_cols=159  Identities=13%  Similarity=0.161  Sum_probs=116.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.++|+++|++|||||||++++..+.+.. +.+|.. .....+...+  +.+++|||||++.+...+..+++++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4567999999999999999999999877643 334433 2223344444  78889999999999999888999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-----HHHhCCCeE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-----RKLIGSPAY  155 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  155 (197)
                      +|||+++++++... ..|+..+....  ++.|+++|+||+|+.+..            ..++..+.     +...+. ++
T Consensus       102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~  167 (192)
T 2b6h_A          102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YV  167 (192)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EE
Confidence            99999999999988 56665554332  589999999999996542            12222111     111233 78


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++||++|.|++++|++|.+.+.+
T Consensus       168 ~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          168 QATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             EECcCCCcCCHHHHHHHHHHHHhc
Confidence            999999999999999999988754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.3e-30  Score=182.61  Aligned_cols=155  Identities=17%  Similarity=0.256  Sum_probs=119.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||+++|..+.+ ..+.+|.+.. ...+..++  +.+++|||||++.+..++..+++++|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999999877 4444444422 23444565  788899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (197)
                      |||+++++++... ..|+..+...  ..+.|+++|+||+|+...            ...++..+...     ..+. +++
T Consensus        95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~  160 (181)
T 2h17_A           95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ  160 (181)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCce-EEE
Confidence            9999999999988 5555554433  258999999999999653            22333333321     2233 789


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ++||++|.|++++|++|.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=5.6e-31  Score=185.58  Aligned_cols=159  Identities=19%  Similarity=0.200  Sum_probs=121.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.++|+++|.+|+|||||++++..+.+.. +.+|.. .....+..++  +.+++|||||++.+...+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            568999999999999999999998877643 344443 2223444554  678899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-----HHHHhCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-----LRKLIGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  156 (197)
                      |+|+++++++... ..|+..+... . ++.|+++|+||+|+.+..            ..++...     .+...+. +++
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  161 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIV  161 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence            9999999999988 5555444332 2 589999999999997642            1122221     1122334 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|+++.+.+.++
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             EccCCCccCHHHHHHHHHHHHHhc
Confidence            999999999999999999987543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=9.9e-31  Score=183.27  Aligned_cols=159  Identities=20%  Similarity=0.256  Sum_probs=119.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|++|||||||++++.++.+ ..+.+|.+. ....+..++  +.+++|||||++.+...+..+++++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            5679999999999999999999998754 223344332 223444554  778899999999999888889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (197)
                      |||+++++++... ..|+..+... . .+.|+++|+||+|+.+...            .++..+..     ...+. +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~  155 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QIQ  155 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCCC------------HHHHHHHhCchhccCCce-EEE
Confidence            9999999999988 5565544332 2 5899999999999976421            22222211     11233 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|+++.+.+.++
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC---
T ss_pred             EccCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999887543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=7e-31  Score=186.24  Aligned_cols=168  Identities=14%  Similarity=0.181  Sum_probs=121.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEE-CCeEEEEEEEEcCCcccccccc---cCCCCC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYRG   77 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~---~~~~~~   77 (197)
                      .++.+||+++|.+|||||||++++.+. +........ .........+ ++..+.+++|||||++.|....   ..++++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            346799999999999999999987764 322211111 1111222233 3556789999999999987765   788999


Q ss_pred             CcEEEEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH----HhC
Q 029215           78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK----LIG  151 (197)
Q Consensus        78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  151 (197)
                      +|++++|||++++  +++... ..|+..+....++.|+++|+||+|+.+.....   ...+.+..+++..+++    ..+
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             CCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999997  666666 66777665556799999999999986532100   0011255566777887    566


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      . +++++||++ .|++++|+.+++.+
T Consensus       172 ~-~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 L-SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             E-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             c-ceEEEEech-hhHHHHHHHHHHHh
Confidence            6 899999999 99999999999875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.4e-29  Score=179.90  Aligned_cols=164  Identities=33%  Similarity=0.577  Sum_probs=137.9

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+++||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            4579999999999999999999999888776667664 334556778898899999999999999888888889999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|+|+++..++... ..|+..+.... .+.|+++++||+|+.+...          +..++++.++...+. .++++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal  150 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  150 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999887 67777666544 4789999999999976443          566788899998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029215          162 TQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (197)
                      ++.|++++|+++.+.+.+
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=2.5e-31  Score=186.73  Aligned_cols=166  Identities=23%  Similarity=0.347  Sum_probs=120.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCceeece-eEEEEE---CCeEEEEEEEEcCCcccccccccCCCCCCc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      .+||+++|++|||||||+++|.+.  .+...+.+|.+..+ ...+..   ++..+.+++|||+|++.+..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999984  45555566653332 222222   234678899999999999988888889999


Q ss_pred             EEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc---HHHHHHHHHHhCCC--
Q 029215           80 VFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT---TAQGEELRKLIGSP--  153 (197)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--  153 (197)
                      ++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+.+...          +.   .+.+..+++.++..  
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence            99999999997 578877 788888877667899999999999965432          21   33455666666763  


Q ss_pred             -eEEEeccCCCC-CHHHHHHHHHHHHcCCch
Q 029215          154 -AYIECSSKTQQ-NVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       154 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~~  182 (197)
                       +++++||+++. +++++++.+.+.+...+.
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             hheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence             28999999996 999999999998876543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-30  Score=181.32  Aligned_cols=157  Identities=15%  Similarity=0.215  Sum_probs=118.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++..+.+ ..+.+|.... ...+..++  +.+.+|||||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998766 3344444322 23444555  778899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-----hCCCeEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----IGSPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (197)
                      |+|+++++++... ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+....     .+. +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~  157 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SIV  157 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEE
Confidence            9999999999988 5666655544  268999999999999654            223333332221     122 789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHc
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++||++|.|++++|+++.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          158 ASSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EccCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=2.1e-28  Score=172.81  Aligned_cols=161  Identities=34%  Similarity=0.580  Sum_probs=138.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++++++|++|||||||++++.+..+...+.++.... ....+.+++..+.+++||++|++++...+..+++.++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            46899999999999999999999988877777776443 35677788988899999999999998888888889999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |+|+++..+++.+ ..|+..+.... .+.|+++++||+|+.+...          ...++++.++...+. .++++||++
T Consensus       108 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald  175 (191)
T 1oix_A          108 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALD  175 (191)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999998887 66777665543 4789999999999976443          567788999999887 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029215          163 QQNVKAVFDAAIKVV  177 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (197)
                      +.|++++|+++.+.+
T Consensus       176 ~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          176 STNVEAAFQTILTEI  190 (191)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=1.1e-29  Score=182.28  Aligned_cols=173  Identities=16%  Similarity=0.135  Sum_probs=116.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCe-EEEEEEEEcCCcccccc-cccCCCCCCcE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~~~~   80 (197)
                      +.+.++|+++|.+|||||||+++|..+.+...+.++......  +.+++. .+.+++|||||++.+.. ++..+++.+|+
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            456799999999999999999999999887777655433332  445533 47889999999999887 77888999999


Q ss_pred             EEEEEeCCCHh-HHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccCCcccccC------------------------C
Q 029215           81 FILAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQFFID------------------------H  132 (197)
Q Consensus        81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~------------------------~  132 (197)
                      +++|||+++.. ++......|...+...   .++.|+++|+||+|+.........                        .
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999864 4666645666555442   247999999999999765320000                        0


Q ss_pred             CCCccccHHHHHHHHHHhC--CCeEEEeccCCC------CCHHHHHHHHHHHH
Q 029215          133 PGAVPITTAQGEELRKLIG--SPAYIECSSKTQ------QNVKAVFDAAIKVV  177 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~~  177 (197)
                      ...+.+..++++.++....  ..+|++|||++|      .||+++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence            0000000001111111110  347999999999      99999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=6.2e-29  Score=173.23  Aligned_cols=160  Identities=18%  Similarity=0.196  Sum_probs=117.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+++|.+|+|||||+++|..+.+...+.++.. +.....+..++.  .+.+|||||++.+..++..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            34679999999999999999999999887665555442 333345666774  567999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC--------CC
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--------SP  153 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  153 (197)
                      ++|+|++++......  .++..+...  +.|+++|+||+|+....             .++........+        ..
T Consensus        83 i~v~d~~~~~~~~~~--~~l~~~~~~--~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV--EAINHAKAA--NVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT  145 (178)
T ss_dssp             EEEEETTCCCCHHHH--HHHHHHGGG--SCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred             EEEEECCCCCcHHHH--HHHHHHHhC--CCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence            999999884332222  222333333  89999999999996531             122222222221        13


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +++++||++|.|++++|++|++.+...+
T Consensus       146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          146 IFCKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             EEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence            7999999999999999999999876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=9.1e-29  Score=179.30  Aligned_cols=167  Identities=11%  Similarity=0.070  Sum_probs=117.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----------cccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~   72 (197)
                      ...++|+|+|.+|||||||+++|.++.+. .....++.......+...+  +.+.+|||||+..          +.. +.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            45799999999999999999999987763 2222223223333334454  6788999999832          111 12


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccH---HHHHHHHH
Q 029215           73 LSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT---AQGEELRK  148 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~  148 (197)
                      .++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+.+...          +..   ..+..++.
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~  173 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILD  173 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHH
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHH
Confidence            335778999999999998776421 1456666666556899999999999976543          333   35566777


Q ss_pred             HhC--CCeEEEeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          149 LIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       149 ~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      ..+  . +++++||++|.|++++|++|.+.+.+.+...
T Consensus       174 ~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          174 NVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             HCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            665  5 8999999999999999999999987655433

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.4e-28  Score=169.76  Aligned_cols=152  Identities=15%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc-eeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCCC--
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR--   76 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~--   76 (197)
                      .++|+++|++|+|||||+++|.+..+.....++ +.......+..++  ..+++|||||++.+..      +...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            589999999999999999999987653333333 2333444555666  5788999999987753      2234443  


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++|++++|+|+++.+..    ..|+..+...  +.|+++|+||+|+.....          +.. ++.++++.++. +++
T Consensus        81 ~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~~  142 (165)
T 2wji_A           81 KPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KVV  142 (165)
T ss_dssp             CCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CEE
T ss_pred             CCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CEE
Confidence            79999999999986543    3455555554  799999999999865332          222 35678888887 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ++||++|.|++++|+++.+.+
T Consensus       143 ~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          143 PLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999998875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.8e-29  Score=184.12  Aligned_cols=161  Identities=18%  Similarity=0.296  Sum_probs=121.9

Q ss_pred             cceeEEEEECCC---------CCcHHHHHHHHhh---CCCCCCCCCce-eece-eE--------------EEEECCeEEE
Q 029215            4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDNF-SA--------------NVVVDGSTVN   55 (197)
Q Consensus         4 ~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~t~-~~~~-~~--------------~~~~~~~~~~   55 (197)
                      ...+||+|+|.+         |||||||+++|..   +.+...+.+++ ...+ ..              ...+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            457999999999         9999999999998   56666666664 2111 11              1124566788


Q ss_pred             EEEEE-----------------------cCCcccccccccCCCC---------------------CCcEEEEEEeCCCH-
Q 029215           56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK-   90 (197)
Q Consensus        56 l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-   90 (197)
                      +++||                       ++|+++|..++..++.                     ++|++++|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       7788888888888887                     79999999999998 


Q ss_pred             -hHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCCH
Q 029215           91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNV  166 (197)
Q Consensus        91 -~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  166 (197)
                       +++..+ ..|+..+...  .++.|+++|+||+|+.....          +  +++++++... +. +++++||++|.|+
T Consensus       177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~gv  242 (255)
T 3c5h_A          177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVNV  242 (255)
T ss_dssp             --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBSH
T ss_pred             hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCCH
Confidence             999988 7887777654  25899999999999965432          2  5677777764 55 8999999999999


Q ss_pred             HHHHHHHHHHHc
Q 029215          167 KAVFDAAIKVVL  178 (197)
Q Consensus       167 ~~~~~~i~~~~~  178 (197)
                      +++|++|++.+.
T Consensus       243 ~elf~~l~~~l~  254 (255)
T 3c5h_A          243 DLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=1.4e-28  Score=185.50  Aligned_cols=169  Identities=20%  Similarity=0.263  Sum_probs=127.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-----cccccCCCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~   76 (197)
                      ..+||+++|.+|||||||+++++++.  +.. .+.+|....+. .+.+.+ .+.+++|||||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            46899999999999999999998873  222 23344433332 344433 478999999999988     677788889


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-
Q 029215           77 GADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-  152 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (197)
                      ++|++++|||+++++++..+ ..|   +..+....++.|+++|+||+|+.+....    .....+..+++.++++.+|. 
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999887 555   4444545678999999999999762210    00001345788889999883 


Q ss_pred             -CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          153 -PAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                       .+++++||++ .++.++|..+++.+....
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence             5999999999 899999999998876654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=9.5e-29  Score=188.04  Aligned_cols=160  Identities=15%  Similarity=0.185  Sum_probs=116.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+ +|.... ...+...+  +.++||||||++.+..++..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35689999999999999999999988764432 333222 12333444  778899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (197)
                      |||++++.++......|...+.... +++|+++|+||+|+.+..            ..++......     ..+. ++++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~  305 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQA  305 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCE-EEEE
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCC-EEEE
Confidence            9999999999988555555555443 689999999999997642            1222222111     1222 6899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +||++|.|++++|++|.+.+.++
T Consensus       306 vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          306 TCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EECCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999988754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=2.6e-29  Score=188.40  Aligned_cols=164  Identities=15%  Similarity=0.179  Sum_probs=119.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCC---CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---cccCCCCCCcEE
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   81 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~~~~   81 (197)
                      ||+++|..|||||||++++..+.+..   .+.+|.+..+..   ++ ..+.+++|||+||++|..   .++.++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999887654322   244555444332   22 347899999999999964   357889999999


Q ss_pred             EEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH----hCCCeE
Q 029215           82 ILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL----IGSPAY  155 (197)
Q Consensus        82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (197)
                      ++|||++++  +++... ..|+..+....+++|++++|||+|+..+..+.   ...+.+..++++++++.    +++ +|
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f  151 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF  151 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence            999999998  333333 34455555556799999999999997642100   00122566677777775    455 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|||++ .+|.++|..+++.+.+..
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhhH
Confidence            9999998 589999999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=1.2e-27  Score=164.02  Aligned_cols=150  Identities=23%  Similarity=0.192  Sum_probs=106.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-------cccccCCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~   77 (197)
                      .||+++|++|+|||||++++.+..+.  ....+++.......+..++.  .+.+|||||++.+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987642  33344444445555666664  6779999999873       3334556789


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|++++.+...  ..+...+...  +.|+++|+||+|+.+..              +++.+++ ..+..++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~--------------~~~~~~~-~~~~~~~~~  140 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE--------------LYLGPLY-GLGFGDPIP  140 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG--------------GGCGGGG-GGSSCSCEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch--------------HhHHHHH-hCCCCCeEE
Confidence            999999999998644332  2333344443  89999999999997542              1223344 456557999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029215          158 CSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      +||++|.|++++|+++.+.+
T Consensus       141 ~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          141 TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CBTTTTBSHHHHHHHHHHHC
T ss_pred             EecccCCChHHHHHHHHHhC
Confidence            99999999999999998865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=5.4e-28  Score=170.95  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=106.2

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEECCeEEEEEEEEcCC----------ccccccc
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRL   70 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G----------~~~~~~~   70 (197)
                      .....++|+|+|.+|+|||||+++|.++.+...+.++...... .....++   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            3456799999999999999999999988755544444432222 2233333   477999999          6666666


Q ss_pred             ccCCCCCC---cEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc--HHHHHH
Q 029215           71 RPLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT--TAQGEE  145 (197)
Q Consensus        71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~  145 (197)
                      +..+++.+   |++++|+|++++.++.+.  .+...+...  +.|+++|+||+|+.+...          +.  .+++.+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~  161 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGK----------WDKHAKVVRQ  161 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence            66666555   999999999998776654  233344443  899999999999976532          21  122222


Q ss_pred             -HHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          146 -LRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       146 -~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                       ++...+ .+++++||++|.|++++|+++.+.+.
T Consensus       162 ~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          162 TLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence             221223 48999999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=1.3e-26  Score=174.86  Aligned_cols=164  Identities=15%  Similarity=0.125  Sum_probs=128.2

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEEC-CeEEEEEEEEcCCccccc----------
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN----------   68 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~----------   68 (197)
                      +....-.|+++|.+|+|||||+|+|++..+.  .....++........... +  +.+.||||||+..+.          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            3456788999999999999999999988764  334444444444455555 5  677899999986544          


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..+..++..+|++++|+|++++.++.+. ..|+..+...  +.|+++|+||+|+.....          ...+....+.+
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~  150 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHK  150 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHH
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHH
Confidence            3445567889999999999998888876 6667787775  899999999999973332          45667777888


Q ss_pred             HhC-CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          149 LIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .++ ..+++++||++|.|++++|+++.+.+...
T Consensus       151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          151 KHPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            874 45899999999999999999999988654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.95  E-value=9e-28  Score=193.60  Aligned_cols=164  Identities=23%  Similarity=0.301  Sum_probs=122.4

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEE---------EECCeEEEEEEEEcCCcccccccccC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLRPL   73 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~l~i~D~~G~~~~~~~~~~   73 (197)
                      ..+.+||+++|.+|||||||++++.+..+...+.+|.+..+....         ..++..+.+++||+||++.+..++..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999998887777777754443221         11233578899999999999999888


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +++.+|++++|+|+++.+   .. ..|+..+..+.++.|+++|+||+|+.+...          +..++++.++...+. 
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-  182 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN-  182 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT-
T ss_pred             HccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC-
Confidence            899999999999998764   33 678888888777899999999999976544          667788888888887 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +++++||++|.|++++++++.+.+....
T Consensus       183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          183 RFHRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred             ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence            8999999999999999999999987754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2e-27  Score=167.05  Aligned_cols=158  Identities=15%  Similarity=0.180  Sum_probs=117.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCC-CCCceeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCCC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR   76 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~   76 (197)
                      .+.++|+++|++|||||||+++|.+..+... +++++.......+..++  ..+++|||||++.+..      ++..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            4679999999999999999999998654322 22223333444555666  6788999999988752      3344443


Q ss_pred             --CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           77 --GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        77 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                        .++++++|+|.++.   ... ..|...+...  +.|+++|+||+|+.....          +. .++.++++.++. +
T Consensus        83 ~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-~  144 (188)
T 2wjg_A           83 NEKPDLVVNIVDATAL---ERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-K  144 (188)
T ss_dssp             HHCCSEEEEEEEGGGH---HHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-C
T ss_pred             ccCCCEEEEEecchhH---HHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-C
Confidence              58999999999864   333 4566666554  899999999999965432          22 346778888887 9


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++++||+++.|++++|+++.+.+....
T Consensus       145 ~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          145 VVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999987665

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=2.1e-27  Score=167.71  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=111.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC----------ccccccccc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP   72 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~   72 (197)
                      ....++|+++|.+|+|||||+++|++..+. ...++............+  ..+.+|||||          ++.+..++.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            345789999999999999999999988642 233333222222222112  2466999999          555555555


Q ss_pred             CCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           73 LSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .+++   .++++++|+|+++..+....  .+...+...  +.|+++|+||+|+.+...        .....+++++++..
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence            5554   45999999999876443332  223333333  799999999999975422        12344566677776


Q ss_pred             hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          150 IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      .+..+++++||++|.|++++|+++.+.+.+
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            665599999999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=6.4e-27  Score=172.29  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=118.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc------cCCC-
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY-   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~-   75 (197)
                      .+.++|+++|.+|||||||+++|++..+. ..+++++.......+...+  ..+.+|||||+..+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            46799999999999999999999986652 3334444444444455555  678899999998876533      3444 


Q ss_pred             -CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           76 -RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                       ..+|++++|+|+++.++..    .|...+...  +.|+++|+||+|+.....          +.. ++..+++.+++ +
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~~-~~~~l~~~lg~-~  142 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MKI-DRYELQKHLGI-P  142 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CCB-CHHHHHHHHCS-C
T ss_pred             hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hHH-HHHHHHHHcCC-C
Confidence             5899999999999876533    344455554  899999999999965432          222 36778888897 9


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++++||++|.|++++|+++.+.+.
T Consensus       143 vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          143 VVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCcCHHHHHHHHHHHhh
Confidence            999999999999999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=8e-28  Score=167.16  Aligned_cols=154  Identities=21%  Similarity=0.240  Sum_probs=112.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (197)
                      ..++|+++|.+|+|||||+++|.+..+  ...+.+++.+.....+.+++.  .+.+|||||++.+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998753  344555555556667777774  46799999987543211        124


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ++.+|++++|||++++.++..  ..|+..+.... .++|+++|+||+|+.+...                 .++...+. 
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------------~~~~~~~~-  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------------GMSEVNGH-  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------------EEEEETTE-
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------------hhhhccCC-
Confidence            678999999999999888764  35666665554 4799999999999964321                 00111344 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +++++||++|.|++++|+++.+.+...
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGFD  167 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence            899999999999999999999887543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=8e-28  Score=169.28  Aligned_cols=158  Identities=18%  Similarity=0.212  Sum_probs=112.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC-----------cccccccccCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~~~   75 (197)
                      ++|+++|.+|||||||++++.++.+...+.++... ....+...    .+.+|||||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999998876655554321 12222333    577999999           555666666666


Q ss_pred             CC-CcEEEEEEeCCCHhHHHHHHHHHHHH---------HhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           76 RG-ADVFILAFSLISKASYENVAKKWIPE---------LRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .. ++++++++++.|..++......|...         +.... .+.|+++|+||+|+....             .+++.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~  143 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN  143 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence            65 66666666666667776654555431         11111 489999999999996531             45677


Q ss_pred             HHHHHhCCC------eEEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215          145 ELRKLIGSP------AYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       145 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      .+++.++..      +++++||++|.|++++|+++.+.+.+.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            888888862      37999999999999999999998865543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=6.1e-27  Score=173.40  Aligned_cols=153  Identities=16%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCCC-
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~-   76 (197)
                      ..++|+++|.+|||||||+++|++.. +..++++++.......  +.. ...+++|||||++.+..      +++.++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            45899999999999999999999865 4455544443322222  333 45788999999987763      3344443 


Q ss_pred             -CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           77 -GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                       .+|++++|+|+++.++..    .|...+.+.  +.|+++|+||+|+.....          +. .++..+++.+++ ++
T Consensus        79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v  140 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV  140 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence             699999999999876543    344444444  899999999999865432          22 345678888887 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      +++||++|.|++++|+++.+.+.
T Consensus       141 i~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          141 VATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             EECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEEccCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=1.6e-25  Score=168.13  Aligned_cols=157  Identities=15%  Similarity=0.122  Sum_probs=113.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~   74 (197)
                      +..+|+++|.+|+|||||+|+|++..+.  ...+.|+.......+...+  ..++||||||+..        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            4678999999999999999999988763  2333444444443444444  6788999999876        33344567


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-hCCC
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-IGSP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (197)
                      ++.+|++++|+|++++.+..+  ..+...+....++.|+++|+||+|+.....          .    .....+. .+..
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~----~~~~~~~~~~~~  147 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------E----AMKAYHELLPEA  147 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------H----HHHHHHHTSTTS
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------H----HHHHHHHhcCcC
Confidence            889999999999998754443  334456665556899999999999965321          0    2222333 3445


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++++||++|.|++++++++.+.+..
T Consensus       148 ~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          148 EPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            78999999999999999999987643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=4.5e-26  Score=167.53  Aligned_cols=150  Identities=14%  Similarity=0.229  Sum_probs=113.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----------cccCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~~   75 (197)
                      .+|+++|.+|||||||+++|++... ...+++++.+.....+..++.  .+.+|||||+..+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998754 233444445555666667774  677999999987764          334455


Q ss_pred             --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                        +.+|++++|+|+++.++...+    ...+...  +.|+++|+||+|+.....          .. .....+++.+++ 
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-  141 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC-  141 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence              789999999999987654433    3334444  899999999999875432          11 124557778887 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHH
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      +++++||++|.|++++|+++.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          142 SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999999887

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=5.1e-26  Score=164.11  Aligned_cols=165  Identities=12%  Similarity=0.010  Sum_probs=108.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCC---CCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcc----------ccc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQE----------DYN   68 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~----------~~~   68 (197)
                      ....++|+|+|.+|+|||||+++|++...   .....+++...  ...... .....+.+|||||..          .+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            34578999999999999999999998762   23333332221  122232 223567899999953          223


Q ss_pred             ccccCCC---CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215           69 RLRPLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE  145 (197)
Q Consensus        69 ~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      .+...++   ..+|++++|+|+++..+...  ..++..+...  +.|+++|+||+|+......        ....+...+
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~  171 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQK  171 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHH
Confidence            3333343   34889999999987644332  3556666665  8999999999999754320        001222223


Q ss_pred             HHHHh------CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          146 LRKLI------GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       146 ~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .....      ...+++++||++|.|++++|++|.+.+....
T Consensus       172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            33332      3448999999999999999999999987654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=2.1e-26  Score=171.01  Aligned_cols=156  Identities=15%  Similarity=0.166  Sum_probs=114.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc----------cC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------~~   73 (197)
                      +.++|+++|.+|+|||||+|+|++..+. ..+++++.+.....+...+  ..+.+|||||+..+....          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4689999999999999999999987642 2333444444455555556  356699999998876322          11


Q ss_pred             C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           74 S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +  .+.+|++++|+|+++.++...    |...+.+.  +.|+++|+||+|+.+...          . ......+++.++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg  142 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG  142 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence            2  268999999999998765443    33344444  899999999999865432          1 123466778888


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      + +++++||++|.|++++|+++.+.+...
T Consensus       143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          143 C-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            7 999999999999999999999877654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=6.3e-25  Score=173.76  Aligned_cols=156  Identities=16%  Similarity=0.151  Sum_probs=99.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (197)
                      ..++|+++|.+|+|||||+|+|.+..  +...+.+++.+.....+.+++  +.+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            35899999999999999999999874  345566666666677777887  567899999987765433        346


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ++++|++++|+|++++.++... ..+...+... .+.|+++|+||+|+.....          .   ....+.+... .+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~~~-~~  373 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADGTG-TE  373 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHHHT-SC
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhcCC-Cc
Confidence            7899999999999998776432 2222222222 2799999999999976532          2   1233444322 48


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++++||++|.|+++++++|.+.+.
T Consensus       374 ~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          374 VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=2.5e-25  Score=165.18  Aligned_cols=157  Identities=18%  Similarity=0.117  Sum_probs=114.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCC--
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~--   75 (197)
                      +.++|+++|++|+|||||+++|++..+.. ...+++.......+...+.  .+.+|||||+..+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            35899999999999999999999876522 2333334444455666664  577999999987765      344444  


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      .++|++++|+|+++.+.   . ..|...+... ...|+++|+||+|+.+...          ... ....+++.++. ++
T Consensus        80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~  142 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV  142 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred             cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence            67999999999998643   2 2333333333 1399999999999865432          122 26678888887 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +++||++|.|++++|+++.+.+...
T Consensus       143 ~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          143 IPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999987544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=1.8e-25  Score=176.09  Aligned_cols=159  Identities=18%  Similarity=0.217  Sum_probs=113.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc----------ccccccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP   72 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~   72 (197)
                      ..++|+++|.+|||||||+++|++..+  ...+.+++.+.....+..++.  .+++|||||+.          .|..+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            569999999999999999999998765  455566666666667777775  47799999983          3332222


Q ss_pred             -CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHHh
Q 029215           73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKLI  150 (197)
Q Consensus        73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  150 (197)
                       .+++.+|++++|+|++++.++++.  .|...+...  +.|+++|+||+|+.+...          ...++.. .+.+.+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l  317 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF  317 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence             356789999999999998888775  566666654  899999999999976432          2333332 222222


Q ss_pred             ---CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          151 ---GSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       151 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                         +..+++++||++|.|++++|+.+.+.+..
T Consensus       318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence               33489999999999999999999887753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=2.5e-25  Score=176.19  Aligned_cols=160  Identities=19%  Similarity=0.216  Sum_probs=118.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCC----------cccccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~   71 (197)
                      ...++|+++|.+++|||||+++|.+..  ....+.+++.+.....+..++.  .+++|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            356899999999999999999999764  3455666666666677777775  677999999          55555544


Q ss_pred             c-CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215           72 P-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI  150 (197)
Q Consensus        72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      . .+++.+|++++|+|+++..+..+  ..|...+...  +.|+++|+||+|+.+...          ...+++.+.++..
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  336 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence            3 35678999999999998644333  3566666554  899999999999986543          4556666665554


Q ss_pred             ----CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          151 ----GSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       151 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                          +..+++++||++|.|++++|+++.+.+..
T Consensus       337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence                33599999999999999999999987743

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1e-25  Score=162.01  Aligned_cols=148  Identities=12%  Similarity=0.127  Sum_probs=100.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC---CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCC---
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~---   77 (197)
                      .+.++|+++|++|+|||||+++|....+..   .+.++....+        ..+.+++|||||++.+...+..++..   
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            467999999999999999999999887643   2333332222        33567899999999998877777766   


Q ss_pred             -CcEEEEEEeCC-CHhHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215           78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI  150 (197)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                       +|++++|+|++ +++++... ..|+..+...     .++.|+++|+||+|+.......    .......+++..++...
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIERR  156 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHHH
Confidence             89999999999 88888877 4554444332     2589999999999997654300    00001145566777777


Q ss_pred             CCCeEEEeccCCCCC
Q 029215          151 GSPAYIECSSKTQQN  165 (197)
Q Consensus       151 ~~~~~~~~Sa~~~~~  165 (197)
                      +. +++++||++|.+
T Consensus       157 ~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KK-SLNEVERKINEE  170 (218)
T ss_dssp             HH-HHHC--------
T ss_pred             hc-cccccccccccc
Confidence            76 788999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=4e-24  Score=168.55  Aligned_cols=153  Identities=22%  Similarity=0.203  Sum_probs=105.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc---------cccccCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~~   75 (197)
                      .+|+++|.+|||||||+|+|++...  ..+.++++.+.....+.+.+.  .+++|||||++..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            3799999999999999999998763  455666666677777778885  4679999998753         22345568


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH-HHHHHHhCCCe
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELRKLIGSPA  154 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  154 (197)
                      +++|++++|+|++++.+..+.  .+...+...  ++|+++|+||+|+...            . ..++ .++. ..+..+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~  141 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE  141 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence            899999999999886554332  223333444  7999999999997431            0 1222 3343 456547


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++++||++|.|++++++++.+.+..
T Consensus       142 ~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          142 PIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCHHHHHHHHHHhccc
Confidence            8999999999999999999998863

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=3e-25  Score=172.99  Aligned_cols=157  Identities=16%  Similarity=0.171  Sum_probs=115.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc-------CC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS   74 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~   74 (197)
                      ...++|+|+|..++|||||+++|+...+  .....+++.+.....+...+. ..+++|||||++.+..+..       .+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            4579999999999999999999998765  234444554555555666553 2678999999998876533       36


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++++|+|++..+.    ...|+..+...  +.|+++|+||+|+.....            .+...++++.++. +
T Consensus       111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence            788999999999933322    25666667666  899999999999977543            2556666667776 9


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ++++||++|.|++++|++|.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999998554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.5e-23  Score=160.01  Aligned_cols=161  Identities=19%  Similarity=0.143  Sum_probs=116.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc---------ccC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~---------~~~   73 (197)
                      ...++++++|.+|+|||||+++|.+.... .....++.......+...+  ..+.+|||||.......         ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            35689999999999999999999987642 1222333222223333444  56789999998653211         112


Q ss_pred             CCCCCcEEEEEEeCCCHh--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           74 SYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ....+|++++|+|+++..  ++... ..|+..+.....+.|+++|+||+|+.....            .+++.+++...+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~  309 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG  309 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence            334689999999998876  56666 677777766555899999999999965422            245566666677


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      . +++++||++|.|++++++++.+.+...
T Consensus       310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          310 L-NPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            6 899999999999999999999988543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=2e-23  Score=156.88  Aligned_cols=159  Identities=18%  Similarity=0.101  Sum_probs=113.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcc---------ccccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~   72 (197)
                      .+..+|+++|++|+|||||+++|.+..+.  .....++.......+..++  ..+.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            34568999999999999999999987652  2233343333333444455  567799999987         3444556


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .+++.+|++++|+|+++ -+  .....+...+...  +.|+++++||+|+.....          ...+....+.+.++.
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~  148 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF  148 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence            78899999999999977 22  2212333444433  799999999999975221          234555666666676


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ..++++||+++.|++++++.+.+.+..
T Consensus       149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          149 LDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            579999999999999999999987653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=2.5e-24  Score=170.50  Aligned_cols=151  Identities=20%  Similarity=0.253  Sum_probs=115.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc-ccccc--------ccCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS   74 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~--------~~~~   74 (197)
                      .++|+++|.+|+|||||+|+|.+..  +..++.+|+.+.....+.+++  ..+.+|||||+. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999864  456677777777777777887  567899999987 65432        1235


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ++.+|++++|+|++++.++++.  .+++.+    .+.|+++|+||+|+.+.            +..+++.++.. .+. +
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence            6789999999999998777654  333333    37899999999999643            23344444332 233 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++++||++|.|+++++++|.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=8.2e-24  Score=161.56  Aligned_cols=125  Identities=18%  Similarity=0.172  Sum_probs=96.3

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC----------HhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD  121 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D  121 (197)
                      +.+++|||+|++.++..|..++++++++|||||+++          ..++.+. ..|+..+...  .+++|+++++||+|
T Consensus       193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcC
Confidence            788999999999999999999999999999999999          4678887 5555555443  26899999999999


Q ss_pred             ccCCcccc-----cCCCCCccccHHHHHHHHHH-----------hCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          122 LRDDKQFF-----IDHPGAVPITTAQGEELRKL-----------IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       122 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +.......     .-..-...++.+++..++..           .++ .+++|||+++.||+++|+++.+.+.+.
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            96432100     00011123567888888873           333 788999999999999999999988643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=6.1e-23  Score=160.14  Aligned_cols=170  Identities=14%  Similarity=0.045  Sum_probs=114.1

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-------eEEEE---------E---CCeEEEEEEEEcC
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------SANVV---------V---DGSTVNLGLWDTA   62 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-------~~~~~---------~---~~~~~~l~i~D~~   62 (197)
                      .....++|+++|.+++|||||+++|++...............       ...+.         .   ......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            345689999999999999999999987533221000000000       00000         0   1123678899999


Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      |++.|...+...+..+|++++|+|++++.++... ..++..+.... ..|+++|+||+|+.+...        .....++
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~--------~~~~~~~  153 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEE--------ALSQYRQ  153 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHH--------HHHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHH--------HHHHHHH
Confidence            9999998888889999999999999987655554 45555555441 358999999999975431        0011122


Q ss_pred             HHHHHHHhC--CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          143 GEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       143 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ..++....+  ..+++++||++|.|+++++++|.+.+..+.
T Consensus       154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            333332221  338999999999999999999999876543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=1.7e-22  Score=157.90  Aligned_cols=166  Identities=19%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCC---CCCCCCC--ceeecee-EEEEE-------------C--C----eEEE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFS-ANVVV-------------D--G----STVN   55 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~   55 (197)
                      |+....++|+++|+.++|||||+++|.+..   +.....+  |....+. ..+..             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            355678999999999999999999998432   2222222  2221111 11111             1  1    1368


Q ss_pred             EEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC
Q 029215           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  131 (197)
                      +.||||||++.|...+...+..+|++++|+|++++    ++.+.+ .    .+... ...|+++++||+|+.+...    
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~l-~~~~iivv~NK~Dl~~~~~----  152 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEIL-GIDKIIIVQNKIDLVDEKQ----  152 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHHT-TCCCEEEEEECTTSSCTTT----
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHHc-CCCeEEEEEEccCCCCHHH----
Confidence            89999999999988877788899999999999964    343333 2    22222 1358999999999976431    


Q ss_pred             CCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          132 HPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                          .....++++++.+..  ...+++++||++|.|+++++++|.+.+..+
T Consensus       153 ----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          153 ----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             ----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             ----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence                112345666666543  234899999999999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=2.2e-23  Score=164.37  Aligned_cols=154  Identities=21%  Similarity=0.296  Sum_probs=106.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (197)
                      ..++|+++|++|+|||||+|+|.+..  +.....+++.+.....+.+++  ..+.+|||||+..+...+        ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35899999999999999999998753  345556666666666677787  556799999986654332        335


Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++++|+|++++.+...  ..|+..+.    +.|+++|+||+|+......          .  ...++.   ...+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~----------~--~~~~~~---~~~~  359 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI----------T--SLEYPE---NITQ  359 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS----------T--TCCCCT---TCCC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh----------H--HHHHhc---cCCc
Confidence            788999999999998766554  35555554    4799999999999765431          1  000111   2348


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          155 YIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++++||++|.|+++++++|.+.+....
T Consensus       360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          360 IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999886543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=2.4e-23  Score=158.47  Aligned_cols=160  Identities=18%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----ccccccCCC---CCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~~---~~~   78 (197)
                      .+|+++|.+++|||||+++|+.... ...+..++.......+.+++. ..+.+|||||+.+    +..+...++   +.+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            3689999999999999999987653 233444443333334444431 4678999999643    333434443   459


Q ss_pred             cEEEEEEeCCC---HhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           79 DVFILAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        79 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++++|+|+++   +.++.+. ..|...+..+.   .+.|+++|+||+|+...              .+...++++.+..
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------------~e~~~~l~~~l~~  302 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA--------------AENLEAFKEKLTD  302 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------HHHHHHHHHHCCS
T ss_pred             cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------------HHHHHHHHHHhhc
Confidence            99999999998   7788887 78888887764   48999999999998542              1345666666652


Q ss_pred             -CeEEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215          153 -PAYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                       .+++++||+++.|+++++++|.+.+...+.
T Consensus       303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          303 DYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence             378999999999999999999999876554

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=2e-22  Score=162.85  Aligned_cols=165  Identities=17%  Similarity=0.198  Sum_probs=117.6

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCC---------C-----CC-ceee-ceeEEEEE-CCeEEEEEEEEc
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------Y-----VP-TVFD-NFSANVVV-DGSTVNLGLWDT   61 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---------~-----~~-t~~~-~~~~~~~~-~~~~~~l~i~D~   61 (197)
                      |..++..+|+++|+.++|||||+++|+..  .+...         .     .+ |... .....+.. ++..+.+++|||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            45567889999999999999999999752  22111         0     00 1100 01111111 455689999999


Q ss_pred             CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHH
Q 029215           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA  141 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  141 (197)
                      ||+.+|...+...+..+|++++|+|++++.+.+.. ..|..... .  ++|+++++||+|+....            ...
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~-~--~ipiIvviNKiDl~~a~------------~~~  144 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE-Q--DLVIIPVINKIDLPSAD------------VDR  144 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHH
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH-C--CCCEEEEEeccCccccC------------HHH
Confidence            99999988888889999999999999998777766 55544433 3  79999999999997542            223


Q ss_pred             HHHHHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          142 QGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       142 ~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ...++...++..  +++++||++|.|++++|+++.+.+..+.
T Consensus       145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            345566666652  4899999999999999999999987654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=1.9e-23  Score=159.51  Aligned_cols=127  Identities=17%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC----------CHhHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK  119 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK  119 (197)
                      ..+.+++|||+|++.++.+|..++++++++|+|||++          +..++.+. ..|+..+...  .+++|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          77889988 5565555443  268999999999


Q ss_pred             CCccCCcccc---------cCC--CCCccccHHHHHHHHHHh--------------C-CCeEEEeccCCCCCHHHHHHHH
Q 029215          120 LDLRDDKQFF---------IDH--PGAVPITTAQGEELRKLI--------------G-SPAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       120 ~D~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~Sa~~~~~i~~~~~~i  173 (197)
                      +|+..++...         ++.  ......+.+++..++...              + ...+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            9996532210         000  001223456777775431              1 2246899999999999999999


Q ss_pred             HHHHcC
Q 029215          174 IKVVLQ  179 (197)
Q Consensus       174 ~~~~~~  179 (197)
                      .+.+.+
T Consensus       340 ~~~I~~  345 (354)
T 2xtz_A          340 DETLRR  345 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=1.7e-22  Score=149.07  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=106.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCc--eeeceeEEEEECCeEEEEEEEEcCCccccccccc---------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------   72 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------   72 (197)
                      ..++|+|+|.+|+|||||+++|++.. +.....++  +...........+  ..+.||||||+..+.....         
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            56999999999999999999999876 44443333  3333444555666  4677999999876543222         


Q ss_pred             --CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEee-cCCccCCcccccCCCCCccccH-------HH
Q 029215           73 --LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT-KLDLRDDKQFFIDHPGAVPITT-------AQ  142 (197)
Q Consensus        73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~n-K~D~~~~~~~~~~~~~~~~~~~-------~~  142 (197)
                        .+++.+|++++|+|+++..........++..+.......|+++++| |+|+....           +..       ++
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~~  167 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNKA  167 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCHH
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchHH
Confidence              2568899999999998632222111222222211111457777776 99997432           111       34


Q ss_pred             HHHHHHHhCCCe--E--EEeccCCCCCHHHHHHHHHHHHcC
Q 029215          143 GEELRKLIGSPA--Y--IECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       143 ~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++.+....+..-  +  +++||+++.|++++|++|.+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            555666665311  2  789999999999999999998754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=9.3e-23  Score=153.70  Aligned_cols=132  Identities=15%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             EEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC----------CHhHHHHHHHHHHHHHhhhC-CCCCEEE
Q 029215           47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIIL  115 (197)
Q Consensus        47 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ii  115 (197)
                      +...+  +.+++|||+|++.++..|..++++++++|||||++          +..++.+....|...+.... .++|+++
T Consensus       162 ~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL  239 (327)
T 3ohm_A          162 FDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL  239 (327)
T ss_dssp             EEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred             EEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEE
Confidence            33444  78899999999999999999999999999999665          66778877343333333332 6899999


Q ss_pred             EeecCCccCCcccc-----c-CCCCCccccHHHHHHHHH----------HhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          116 VGTKLDLRDDKQFF-----I-DHPGAVPITTAQGEELRK----------LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       116 v~nK~D~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++||+|+...+...     . ..-.....+.+++.++..          ..++ .+++|||+++.||+.+|+.+.+.+.+
T Consensus       240 ~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          240 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             EEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHH
Confidence            99999997543110     0 111112357788887743          2333 67789999999999999999999876


Q ss_pred             Cc
Q 029215          180 PP  181 (197)
Q Consensus       180 ~~  181 (197)
                      ..
T Consensus       319 ~~  320 (327)
T 3ohm_A          319 LN  320 (327)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=3e-22  Score=157.88  Aligned_cols=159  Identities=20%  Similarity=0.199  Sum_probs=107.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-----------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   71 (197)
                      ..++++++|++|||||||++++.+...  ..+..+++.+.....+.+++.  .+.+|||+|+.......           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            468999999999999999999998754  455566666666667778885  46799999985433221           


Q ss_pred             -cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHH
Q 029215           72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL  149 (197)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (197)
                       ..+++.+|++++++|++++.+..+.  .+...+...  +.|+++|+||+|+.+...          ...++.. .+.+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence             1234568999999999987665543  344444444  899999999999975432          2233332 22222


Q ss_pred             h---CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          150 I---GSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       150 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +   +..+++++||++|.|++++|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2   33489999999999999999999887643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=8e-25  Score=174.69  Aligned_cols=161  Identities=19%  Similarity=0.173  Sum_probs=112.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ++..+|+++|++++|||||+++|....+...+.+++. +.....+.. ++  ..++||||||++.|..++..++..+|++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~v   79 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIV   79 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEE
Confidence            3568899999999999999999987654333333332 221222222 23  3577999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH---HHHh-CCCeEEE
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKLI-GSPAYIE  157 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~  157 (197)
                      ++|+|++++...+.. . .+..+...  ++|+++++||+|+.+...     .    ....+....   +..+ +..++++
T Consensus        80 ILVVDa~dg~~~qt~-e-~l~~~~~~--~vPiIVViNKiDl~~~~~-----~----~v~~~l~~~~~~~e~~~~~~~iv~  146 (537)
T 3izy_P           80 ILVVAADDGVMKQTV-E-SIQHAKDA--HVPIVLAINKCDKAEADP-----E----KVKKELLAYDVVCEDYGGDVQAVH  146 (537)
T ss_dssp             EEECBSSSCCCHHHH-H-HHHHHHTT--TCCEEECCBSGGGTTTSC-----C----SSSSHHHHTTSCCCCSSSSEEECC
T ss_pred             EEEEECCCCccHHHH-H-HHHHHHHc--CCcEEEEEecccccccch-----H----HHHHHHHhhhhhHHhcCCCceEEE
Confidence            999999997666554 3 33344444  789999999999975321     0    001111111   1111 1237899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +||++|.|++++++++...+..
T Consensus       147 vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          147 VSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             CCSSSSCSSHHHHHHHHHHHTT
T ss_pred             EECCCCCCchhHHHHHHHhhhc
Confidence            9999999999999999988754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=2.2e-24  Score=169.84  Aligned_cols=152  Identities=16%  Similarity=0.149  Sum_probs=100.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc--------cccccccCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~   76 (197)
                      .+|+++|.+|||||||+|+|.+..+  ..+..+++.+.........+  ..+.+|||||++        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            6899999999999999999998654  23444444444443443444  467799999986        44555666788


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+.....              ++.++. ..+..+++
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~  142 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPY  142 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-------------------CCCSSG-GGSSCCCE
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeE
Confidence            99999999999987665543  444555544  899999999999865321              001122 34544789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++||++|.|++++++++.+.+..
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EEeCcCCCChHHHHHHHHHhcCc
Confidence            99999999999999999998864

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1.3e-22  Score=161.33  Aligned_cols=161  Identities=19%  Similarity=0.153  Sum_probs=110.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC----C---CCCCC-CceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT----F---PTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~----~---~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~   75 (197)
                      .+.++|+++|..++|||||+++|.+..    .   ..... +.+.+.....+..++  ..+.+|||||++.|...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            357999999999999999999998765    1   11111 111111122344455  6788999999999988888888


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-C--C
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-G--S  152 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~  152 (197)
                      ..+|++++|+|++++...+..  ..+..+...  ++|+++|+||+|+.+...        .....+++.++.... +  .
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~  162 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN  162 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred             hhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccccc
Confidence            999999999999984222221  222233334  789999999999975321        012234555555544 2  2


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       163 ~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          163 SSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            48999999999999999999999774

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=2.3e-22  Score=162.64  Aligned_cols=162  Identities=17%  Similarity=0.236  Sum_probs=113.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----CC---------CceeeceeEEEEE---CCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YV---------PTVFDNFSANVVV---DGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----~~---------~t~~~~~~~~~~~---~~~~~~l~i~D~~G~   64 (197)
                      ++..+|+++|+.++|||||+++|+..  .+...     ..         +.+.......+.+   ++..+.+++|||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            35789999999999999999999862  22110     00         0000000111222   455689999999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .+|...+...++.+|++++|+|++++.+++.. ..|..... .  ++|+++|+||+|+....            ..+...
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~-~--~ipiIvViNKiDl~~a~------------~~~v~~  145 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME-M--DLEVVPVLNKIDLPAAD------------PERVAE  145 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHHHHH
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH-C--CCCEEEeeeccCccccc------------HHHHHH
Confidence            99998888889999999999999998777666 55554433 3  78999999999997542            233445


Q ss_pred             HHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          145 ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       145 ~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++...++..  +++++||++|.|++++++++.+.+..+.
T Consensus       146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            566666652  4899999999999999999999987654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=4.8e-22  Score=152.27  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=87.0

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC----------HhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD  121 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D  121 (197)
                      +.+++|||+|++.++..|..++++++++|||||+++          ..++.+. ..|+..+...  ..++|+++++||+|
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChh
Confidence            778899999999999999999999999999999999          6788888 4454444432  36899999999999


Q ss_pred             ccCCcccc-----cCCCC-CccccHHHHHHHHH-----------HhCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          122 LRDDKQFF-----IDHPG-AVPITTAQGEELRK-----------LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       122 ~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      +.......     .-.+- ...++.+++..++.           ..++ .+++|||+++.||+++|+++.+.+.+.
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            96432100     00000 01256677777662           2233 788999999999999999999988643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=2.4e-22  Score=156.95  Aligned_cols=165  Identities=19%  Similarity=0.197  Sum_probs=114.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC--------CCCCC----------CCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ....++|+++|++++|||||+++|...        .+...          ..+.+..  .....+......+.+|||||+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN--TAHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS--CEEEEEECSSCEEEEEECCCS
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEE--eeeeEeccCCeEEEEEECCCh
Confidence            456799999999999999999999863        11110          0011111  122223323356789999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQG  143 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      ++|...+...+..+|++++|+|++++...+.  ..++..+...  ++| +++++||+|+.....       ......+++
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~  154 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEV  154 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHH
Confidence            9998888788899999999999998755443  3455555555  788 889999999974221       000123456


Q ss_pred             HHHHHHhCC----CeEEEeccCCCCC------------------HHHHHHHHHHHHcCC
Q 029215          144 EELRKLIGS----PAYIECSSKTQQN------------------VKAVFDAAIKVVLQP  180 (197)
Q Consensus       144 ~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~  180 (197)
                      .++...++.    .+++++||++|.|                  +.++++.+.+.+..+
T Consensus       155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            667777663    5899999999987                  888888888877644

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=142.49  Aligned_cols=168  Identities=17%  Similarity=0.138  Sum_probs=105.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC---ceeeceeEEEEECCeEEEEEEEEcCCcc-----------cccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQE-----------DYNR   69 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----------~~~~   69 (197)
                      ...++|+|+|.+|+|||||+++|++..+.....+   ++...........+  ..+.+|||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4579999999999999999999998876444333   22333344555666  466799999943           2333


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           70 LRPLSYRGADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      .+...++.+|++++|+|+++...... ....+...+... ...|+++|+||+|+.......    .......+.++.+.+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~----~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLH----DYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHH----HHHHhchHHHHHHHH
Confidence            34455678999999999876433211 112222222211 246999999999987543210    000011246778888


Q ss_pred             HhCCCeEEEeccCCC-----CCHHHHHHHHHHHHcC
Q 029215          149 LIGSPAYIECSSKTQ-----QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       149 ~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~  179 (197)
                      ..+. .++.+++..+     .++.++|+.+.+.+..
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8887 7777776643     6899999998887743

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.87  E-value=9.5e-22  Score=157.42  Aligned_cols=115  Identities=13%  Similarity=0.053  Sum_probs=83.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC------------------CCCC-----CCCceeeceeEEEEECCeEEEEEEEEc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT------------------FPTD-----YVPTVFDNFSANVVVDGSTVNLGLWDT   61 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~------------------~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~   61 (197)
                      +..+|+|+|.+++|||||+++|+...                  ..+.     ..+.+.......+...+  +.+++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            56899999999999999999996211                  0000     00111111223344455  67889999


Q ss_pred             CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ||+.+|...+..+++.+|++++|+|++++.+.... ..| ..+...  ++|+++|+||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence            99999999888899999999999999997766665 434 444444  8999999999999653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=7.5e-22  Score=154.36  Aligned_cols=165  Identities=18%  Similarity=0.137  Sum_probs=109.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCC---CCCCCCC--ceeeceeE-EEEE-------------C--C----eEEEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG   57 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~   57 (197)
                      ....++|+++|+.++|||||+++|.+..   +.....+  |....+.. .+..             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998532   2222222  22211111 1111             0  1    136789


Q ss_pred             EEEcCCcccccccccCCCCCCcEEEEEEeCCCH----hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      ||||||++.|...+...+..+|++++|+|++++    ++.+.+ .    .+... ...|+++++||+|+.+...      
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~~~~------  154 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVDKEK------  154 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCCHHH------
Confidence            999999999887777777889999999999864    333333 2    22222 1358999999999976421      


Q ss_pred             CCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          134 GAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                        .....++++++....  ...+++++||++|.|+++++++|.+.+..+.
T Consensus       155 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          155 --ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             --HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             --HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence              001233444554431  2348999999999999999999998876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=1.4e-21  Score=153.77  Aligned_cols=159  Identities=16%  Similarity=0.100  Sum_probs=103.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC--CCCCC------------------------------CCceeeceeEEEEECC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVDG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~   51 (197)
                      +..++|+++|.+++|||||+++|+...  +....                              .+.+.+.....+...+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            467999999999999999999995431  11100                              1111111122233344


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH------HHHHHHHHHHHhhhCCCCC-EEEEeecCCccC
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~  124 (197)
                        ..+.||||||+++|...+...+..+|++++|+|++++...      ... ...+..+...  ++| +++++||+|+..
T Consensus        95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPT  169 (439)
T ss_pred             --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence              5788999999999998888889999999999999986431      111 2222333333  677 899999999954


Q ss_pred             CcccccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCCHHHHHH
Q 029215          125 DKQFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  171 (197)
                      ....    ........++...+.+..++     .+++++||++|.|+.++++
T Consensus       170 ~~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2100    00001223445556656553     3799999999999999654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=2.8e-22  Score=157.72  Aligned_cols=161  Identities=15%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCCC------------------------------CCceeeceeEEEE
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV   48 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~   48 (197)
                      |.....++|+++|++++|||||+++|+..  .+....                              .+.+.+.....+.
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            56677899999999999999999999864  332110                              0111111111222


Q ss_pred             ECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHH------HHHHHHHhhhCCCC-CEEEEeecCC
Q 029215           49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA------KKWIPELRHYAPGV-PIILVGTKLD  121 (197)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~-p~iiv~nK~D  121 (197)
                      ..+  +.+++|||||+++|...+..++..+|++++|+|+++ .+|+...      ......+...  +. |+++++||+|
T Consensus        81 ~~~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~D  155 (435)
T 1jny_A           81 TKK--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMD  155 (435)
T ss_dssp             CSS--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGG
T ss_pred             cCC--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEccc
Confidence            233  578899999999999888889999999999999998 5565330      2222222222  44 6899999999


Q ss_pred             ccCCcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHHHH
Q 029215          122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  170 (197)
                      +.+...    .........++++.++...+.    .+++++||++|.|+.+++
T Consensus       156 l~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          156 LTEPPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             GSSSTT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             CCCccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            976210    000001234567777777763    479999999999997544

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.87  E-value=1.1e-21  Score=152.70  Aligned_cols=163  Identities=20%  Similarity=0.173  Sum_probs=112.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC-------CCCCC----------CCCceeeceeEEEEECCeEEEEEEEEcCCcccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~-------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~   67 (197)
                      ..++|+++|++++|||||+++|...       .+...          ..+.+...  ....+......+.+|||||+++|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence            4689999999999999999999863       11100          00111111  11222223356789999999999


Q ss_pred             cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      ...+...+..+|++++|+|++++...+.. ..| ..+...  ++| +++++||+|+.....       ......++++++
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~  148 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIREL  148 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHH
Confidence            88888889999999999999986544443 333 444444  788 689999999975221       000123566777


Q ss_pred             HHHhCC----CeEEEeccCCCCC----------HHHHHHHHHHHHcCC
Q 029215          147 RKLIGS----PAYIECSSKTQQN----------VKAVFDAAIKVVLQP  180 (197)
Q Consensus       147 ~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~  180 (197)
                      .+.++.    .+++++||++|.|          +.++++.+.+.+..+
T Consensus       149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            777763    4899999999764          899999999887654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=6e-21  Score=146.54  Aligned_cols=161  Identities=20%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             eE-EEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc---------ccccccCCC
Q 029215            7 IK-CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY   75 (197)
Q Consensus         7 ~~-i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~   75 (197)
                      ++ |+++|++|+|||||+++|.+..+. .++..++.+.....+.+++  ..+.+|||+|...         |...+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 999999999999999999987652 2333444455566777777  4567999999622         222222 46


Q ss_pred             CCCcEEEEEEeCCCHh--HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-C
Q 029215           76 RGADVFILAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-G  151 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (197)
                      ..+|++++|+|++++.  ..... ..|...+.... .+.|+++|+||+|+.....         ......+..+++.+ .
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence            7899999999999876  44444 55666665543 5889999999999865321         01112333444554 2


Q ss_pred             -CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          152 -SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       152 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                       ..+++++||+++.|+++++++|.+.+..+
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence             23678999999999999999999876543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=3.8e-21  Score=155.74  Aligned_cols=168  Identities=16%  Similarity=0.164  Sum_probs=106.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEE-----------C-----CeEEEEEEEEcCCccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-----------D-----GSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~-----------~-----~~~~~l~i~D~~G~~~   66 (197)
                      .+..+|+++|++++|||||+++|.+..+............ ......           .     .....++||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4578999999999999999999987644332211110000 001110           0     0112478999999999


Q ss_pred             ccccccCCCCCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc-------CCCCCc
Q 029215           67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI-------DHPGAV  136 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-------~~~~~~  136 (197)
                      |..++...++.+|++++|+|+++   ++++... .    .+...  ++|+++++||+|+........       ......
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999999   5555443 2    23333  899999999999975321000       000000


Q ss_pred             cc---cHH---HHHHHHHHh--------------CCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          137 PI---TTA---QGEELRKLI--------------GSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       137 ~~---~~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      .+   ..+   +........              +..+++++||++|.|++++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            00   000   111111111              1237899999999999999999998765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=1.1e-21  Score=148.26  Aligned_cols=127  Identities=17%  Similarity=0.147  Sum_probs=94.3

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC----------CHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  121 (197)
                      .+.+++||++|++.++..|..++++++++|||||++          +..++.+....|...+.... +++|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            378899999999999999999999999999999998          67888888444444444433 6899999999999


Q ss_pred             ccCCcccc-----cCCCCCccccHHHHHHHHHHhC--------------------------CCeEEEeccCCCCCHHHHH
Q 029215          122 LRDDKQFF-----IDHPGAVPITTAQGEELRKLIG--------------------------SPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       122 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~Sa~~~~~i~~~~  170 (197)
                      +...+...     .-.........+++.++.....                          ...+++|||+++.+|+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            96532211     0001111225666665544321                          2256789999999999999


Q ss_pred             HHHHHHHcC
Q 029215          171 DAAIKVVLQ  179 (197)
Q Consensus       171 ~~i~~~~~~  179 (197)
                      +.+.+.+++
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.86  E-value=1.3e-21  Score=151.02  Aligned_cols=127  Identities=14%  Similarity=0.161  Sum_probs=94.3

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC----------HhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD  121 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D  121 (197)
                      +.+++|||+|++.++..|..++++++++|||||+++          ..++.+. ..|+..+...  .+++|+++|+||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence            788999999999999999999999999999999999          8899998 6676666554  36899999999999


Q ss_pred             ccCCcc---cc------cCCC----------C-CccccHHHHHHHH-----HHh-------CCCeEEEeccCCCCCHHHH
Q 029215          122 LRDDKQ---FF------IDHP----------G-AVPITTAQGEELR-----KLI-------GSPAYIECSSKTQQNVKAV  169 (197)
Q Consensus       122 ~~~~~~---~~------~~~~----------~-~~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~  169 (197)
                      +.....   +.      ++..          . ......+++..++     +..       ....+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            965432   10      0000          0 0001245566553     221       1225678999999999999


Q ss_pred             HHHHHHHHcCCc
Q 029215          170 FDAAIKVVLQPP  181 (197)
Q Consensus       170 ~~~i~~~~~~~~  181 (197)
                      |.++.+.+.+..
T Consensus       376 F~~v~~~I~~~~  387 (402)
T 1azs_C          376 FNDCRDIIQRMH  387 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998886544

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=2.4e-22  Score=149.28  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=89.9

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCC-CCCC-------CCcee-eceeEEEEECCeEEEEEEEEcCCcccc-----
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY-----   67 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~-------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~-----   67 (197)
                      .+...++|+|+|.+|+|||||+|+|+.... ...+       .+|.. ......+..++..+.+++|||||...+     
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            345679999999999999999999876543 3333       23332 222333334555578999999997322     


Q ss_pred             --cccc------------------cCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           68 --NRLR------------------PLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        68 --~~~~------------------~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                        ..+.                  +..+  ..+|+++++++.++.... .....++..+..   ++|+++|+||+|+...
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~---~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE---KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT---TSCEEEEESSGGGSCH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc---cCCEEEEEeccCCCCH
Confidence              1111                  1111  237899999977653211 111345555544   7999999999998643


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ..        .......+.+.....+. +++++||+++.|+++++++|.+.+
T Consensus       160 ~e--------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EE--------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HH--------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             HH--------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence            21        00112234445556676 789999999999999999998865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.3e-22  Score=139.51  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC---CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCC---
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~---   77 (197)
                      ...++|+++|++|||||||+++|.+..+..   .+.++...        ....+.+.+|||||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            456899999999999999999999887543   11222111        1123567899999999888777766655   


Q ss_pred             -CcEEEEEEeCC-CHhHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccCCc
Q 029215           78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~  126 (197)
                       +|++++|||++ +.+++... ..|+..+...     .++.|+++|+||+|+....
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence             89999999999 89999887 4554444322     2489999999999997654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=2.3e-21  Score=154.41  Aligned_cols=152  Identities=15%  Similarity=0.096  Sum_probs=97.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC--CCC------------------------------CCCCceeeceeEEEEECC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------------------------------DYVPTVFDNFSANVVVDG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~~   51 (197)
                      ...+||+++|.+++|||||+++|+...  +..                              ...+.+.+.....+... 
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence            457999999999999999999997541  110                              00111111112223233 


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  126 (197)
                       .+.+.||||||+++|...+..++..+|++++|+|++++.++..     ........+... ...|+++|+||+|+.+..
T Consensus       110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred             -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence             3678899999999999888888999999999999998754321     112222233322 235699999999997632


Q ss_pred             ccccCCCCCccccH----HHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215          127 QFFIDHPGAVPITT----AQGEELRKLIGS----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       127 ~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (197)
                      .          ...    +++..+....+.    .+++++||++|.|+++
T Consensus       188 ~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 Q----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             H----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             H----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            2          222    233444444443    3789999999999874

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=1.6e-22  Score=160.25  Aligned_cols=161  Identities=16%  Similarity=0.205  Sum_probs=106.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++..+|+++|++++|||||+++|....+.....+.+ .+.....+..++  ..++||||||++.|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            467899999999999999999998754433222211 111111222334  35779999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~  161 (197)
                      +|+|++++...+.. . .+..+...  ++|+++++||+|+........... ....     ..++..++ ..+++++||+
T Consensus        80 LVVda~~g~~~qT~-e-~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~-l~~~-----~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           80 LVVAADDGVMPQTI-E-AIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNE-LSQY-----GILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             EEEETTTBSCTTTH-H-HHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCC-CCCC-----CCCTTCCSSSCEEEECCTT
T ss_pred             EEeecccCccHHHH-H-HHHHHHhc--CceEEEEEEeccccccCHHHHHHH-HHHh-----hhhHHHhCCCccEEEEeee
Confidence            99999885332222 2 22233333  899999999999975321000000 0000     00111222 2489999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 029215          162 TQQNVKAVFDAAIKV  176 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~  176 (197)
                      +|.|++++|+++...
T Consensus       150 tG~gI~eLle~I~~~  164 (501)
T 1zo1_I          150 AGTGIDELLDAILLQ  164 (501)
T ss_dssp             TCTTCTTHHHHTTTT
T ss_pred             eccCcchhhhhhhhh
Confidence            999999999998764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=5.1e-21  Score=150.58  Aligned_cols=156  Identities=17%  Similarity=0.163  Sum_probs=102.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC--CCCC----------CCCceeece--------------------eEEEEECC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVDG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------~~~t~~~~~--------------------~~~~~~~~   51 (197)
                      +..++|+++|.+++|||||+++|+...  +...          ..+++...+                    ........
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456999999999999999999998643  1111          112211000                    00111222


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCccccc
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~  130 (197)
                      ....+.+|||||+++|...+..++..+|++++|+|++++...+..  .++..+...  +. |+++|+||+|+.+...   
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~---  174 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDE---  174 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCH---
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccH---
Confidence            235788999999999988887888999999999999987543332  343444433  44 5899999999975311   


Q ss_pred             CCCCCccccHHHHHHHHHHhC--C--CeEEEeccCCCCCHHHH
Q 029215          131 DHPGAVPITTAQGEELRKLIG--S--PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~  169 (197)
                         .......++...+++.++  .  .+++++||++|.|++++
T Consensus       175 ---~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          175 ---RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ---HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence               000012345666777776  1  37899999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-22  Score=155.63  Aligned_cols=160  Identities=13%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCC--------Cceee-ceeEEEEECCeEEEEEEEEcCCc-------ccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYV--------PTVFD-NFSANVVVDGSTVNLGLWDTAGQ-------EDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~--------~t~~~-~~~~~~~~~~~~~~l~i~D~~G~-------~~~   67 (197)
                      ..++|+|+|++|+|||||+++|+... +...+.        ++... .....+...+..+.+++|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            46899999999999999999987643 322221        22221 12222334566678999999998       556


Q ss_pred             ccccc-------CCC-----------CCCcEEEEEEeCCC-HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215           68 NRLRP-------LSY-----------RGADVFILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        68 ~~~~~-------~~~-----------~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  128 (197)
                      ..++.       .++           .++++.+++|++++ ..++......|+..+.   .++|+++|+||+|+..... 
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e-  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE-  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence            55543       222           22222334444443 3344444334555443   4799999999999976432 


Q ss_pred             ccCCCCCccccH--HHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          129 FIDHPGAVPITT--AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                               +..  +++..++...++ +++++||+++.+ ++.|.++.+.+..
T Consensus       192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence                     322  466677777777 899999999998 7778777776643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=9.8e-21  Score=154.07  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=101.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCC--------------------------------CCceeeceeEEEEECC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~   51 (197)
                      ...++|+++|.+++|||||+++|+.....-..                                .+.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45799999999999999999999865321100                                1112222222333344


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH------HHHHHHHHHHHhhhCCCC-CEEEEeecCCccC
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVAKKWIPELRHYAPGV-PIILVGTKLDLRD  124 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~  124 (197)
                        ..+.||||||++.|...+...+..+|++|+|+|++++...      ... ...+..+...  +. |+++|+||+|+.+
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l--gi~~iIVVvNKiDl~~  319 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL--GIHNLIIAMNKMDNVD  319 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT--TCCEEEEEEECTTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc--CCCeEEEEEecccccc
Confidence              5678999999999999888999999999999999875310      111 2222233322  44 4999999999976


Q ss_pred             CcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHHH
Q 029215          125 DKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  169 (197)
                      ...      ........++..+....+.    .+++++||++|.|+.++
T Consensus       320 ~~~------~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          320 WSQ------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TCH------HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hhH------HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            321      0000123344455555553    48999999999999865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=2.2e-21  Score=149.31  Aligned_cols=150  Identities=13%  Similarity=0.030  Sum_probs=104.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +|+++|.+++|||||+++|+.       ...+.+.....+...+  ..+++|||||+++|.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~-------~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK-------KGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE-------EEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHh-------CCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            899999999999999999971       1111111112222333  468899999999998777777889999999999 


Q ss_pred             CCHhHHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCccCCcccccCCCCCccccHHHHHHHHHHhC--CCeEEE--eccC
Q 029215           88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIE--CSSK  161 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~Sa~  161 (197)
                      ++.. ..+. ..+...+...  ++|. ++++| |+|+ +...        .....++++++....+  ..++++  +||+
T Consensus        93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~--------~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~  159 (370)
T 2elf_A           93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA--------IDELKAKLKVITSGTVLQDWECISLNTNKS  159 (370)
T ss_dssp             TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH--------HHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred             CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH--------HHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            5443 2233 4555555555  7888 89999 9999 4321        0001244555555443  248999  9999


Q ss_pred             C---CCCHHHHHHHHHHHHcCC
Q 029215          162 T---QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~---~~~i~~~~~~i~~~~~~~  180 (197)
                      +   +.|++++++.|.+.+...
T Consensus       160 ~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          160 AKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             SSSTTTTHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhhcccc
Confidence            9   999999999999887543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=3.8e-22  Score=157.95  Aligned_cols=153  Identities=16%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCC--------cccccccccCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~~   75 (197)
                      ..+|+++|.+|||||||+|+|.+..+.  .+..+++.+.........+  ..+++|||||        ++.+...+..++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            578999999999999999999986542  3333333333333333333  5678999999        555566666778


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +++|++++|+|+.+..+..+  ..+...+...  +.|+++|+||+|+.....              ...++ ...+....
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~  161 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP  161 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence            89999999999887544333  3444555554  899999999999864321              11111 12344456


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++||++|.|+.++++++.+.+..
T Consensus       162 ~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          162 YPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             EEeecccccchHHHHHHHHhhccc
Confidence            799999999999999999887653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.84  E-value=1.6e-20  Score=148.44  Aligned_cols=156  Identities=15%  Similarity=0.088  Sum_probs=103.5

Q ss_pred             CC-CcceeEEEEECCCCCcHHHHHHHHhhC--CCCCC------------------------------CCCceeeceeEEE
Q 029215            1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV   47 (197)
Q Consensus         1 ~~-~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~   47 (197)
                      |. +...++|+++|.+++|||||+++|+..  .+...                              ..+.+.+.....+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            44 446799999999999999999999863  22110                              0111111111223


Q ss_pred             EECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---H----HHHHHHHHHHHhhhCCCCC-EEEEeec
Q 029215           48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y----ENVAKKWIPELRHYAPGVP-IILVGTK  119 (197)
Q Consensus        48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~iiv~nK  119 (197)
                      ...+  ..+.||||||+++|...+...+..+|++++|+|++++..   |    +..  ..+..+...  ++| +++++||
T Consensus        81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~~--~v~~iivviNK  154 (458)
T 1f60_A           81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFTL--GVRQLIVAVNK  154 (458)
T ss_dssp             ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHHT--TCCEEEEEEEC
T ss_pred             ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHHc--CCCeEEEEEEc
Confidence            3333  678899999999998888888999999999999998642   2    222  222333333  666 8999999


Q ss_pred             CCccCCcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215          120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (197)
                      +|+.+...      .......+++..+++.+++    .+++++||++|.|+.+
T Consensus       155 ~Dl~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          155 MDSVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             GGGGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             cccccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            99974211      0001233456667677764    4899999999999864

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=1.6e-21  Score=154.57  Aligned_cols=159  Identities=18%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh--CCCCC------------------------C------CCCceeeceeEEEEEC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D------YVPTVFDNFSANVVVD   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~------------------------~------~~~t~~~~~~~~~~~~   50 (197)
                      ....++|+++|+.++|||||+++|+.  +.+..                        +      ..+.+.......+..+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            45679999999999999999999974  22210                        0      0011100101123334


Q ss_pred             CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh---HHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 029215           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKLDLR  123 (197)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~  123 (197)
                      +  ..+.||||||+++|...+...+..+|++|+|+|++++.   +|.   .. ...+..+...  ++| +++++||+|+.
T Consensus       120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l~~~~~~--~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEP  194 (467)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTST
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcH-HHHHHHHHHc--CCCEEEEEEECccCC
Confidence            4  56789999999999998888899999999999999863   222   11 1222222333  787 99999999996


Q ss_pred             CCcccccCCCCCccccHHHHHHHHHHh-CC-----CeEEEeccCCCCCHHHHH
Q 029215          124 DDKQFFIDHPGAVPITTAQGEELRKLI-GS-----PAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~  170 (197)
                      ....   . ........+++..+.... ++     .+++++||++|.|+.+++
T Consensus       195 ~~~~---~-~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQW---S-EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSS---C-HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             Cccc---c-HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            4210   0 000012234566666665 43     369999999999998754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.83  E-value=1e-20  Score=160.25  Aligned_cols=166  Identities=19%  Similarity=0.153  Sum_probs=112.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCC-------CCC--CCC-----Cceeece-eEEEEECCeEEEEEEEEcCCccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------FPT--DYV-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~--~~~-----~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      ...++|+++|++++|||||+++|....       +..  ..+     .+.+..+ ...+.+......++||||||+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            457999999999999999999998631       100  000     0010000 0112222333677899999999998


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ..+...+..+|++|+|+|++++...+..  .++..+...  ++| +++++||+|+.+...       ......+++.++.
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~elL  442 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVRELL  442 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHHH
Confidence            8888889999999999999987544333  344455544  788 789999999975321       0001235667777


Q ss_pred             HHhCC----CeEEEeccCCC--------CCHHHHHHHHHHHHcCC
Q 029215          148 KLIGS----PAYIECSSKTQ--------QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       148 ~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~  180 (197)
                      ...+.    .+++++||++|        .|+.++++.|.+.+..+
T Consensus       443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            77763    48999999999        47999999998877643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=3e-21  Score=144.97  Aligned_cols=159  Identities=21%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCC------CCc-----------------------eeec-------------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPT-----------------------VFDN-------------   42 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~t-----------------------~~~~-------------   42 (197)
                      ..++|+|+|.+|+|||||+++|++..+.+..      .++                       +.+.             
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999988764211      121                       0000             


Q ss_pred             --------eeEEEEEC-CeEEEEEEEEcCCccc-------------ccccccCCCCCCcEEE-EEEeCCCHhHHHHHHHH
Q 029215           43 --------FSANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFI-LAFSLISKASYENVAKK   99 (197)
Q Consensus        43 --------~~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~   99 (197)
                              ....+.+. .....+.+|||||...             +..+...+++.++.++ +|+|+++..+..+. ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                    00000000 0125688999999742             2334455677777666 79999876544443 34


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--hCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          100 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--IGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       100 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ++..+...  +.|+++|+||+|+.+...          ...+..+.....  .+..+++++||++|.|++++++++.+.
T Consensus       184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            55555444  799999999999975432          112221110001  133467889999999999999998873

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=5.4e-20  Score=131.27  Aligned_cols=163  Identities=13%  Similarity=-0.014  Sum_probs=99.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccc----------cccc
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY----------NRLR   71 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~   71 (197)
                      .....+|+++|++|+|||||++++.+..+.....++.+... ...+..++   .+.+|||||+...          ....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999987664333333332221 22222323   3569999997431          1111


Q ss_pred             cCCC---CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           72 PLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..++   ..++++++++|++++.+....  .+...+...  +.|+++++||+|+.....        .......+..++.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~  167 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL  167 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence            1222   568999999999886554321  222223333  789999999999865321        0012345555555


Q ss_pred             HhC-CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          149 LIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ..+ ...++++||+++.|+++++++|.+.+.+.
T Consensus       168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            554 23678899999999999999999887553

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.81  E-value=1.1e-19  Score=134.08  Aligned_cols=118  Identities=16%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCC-------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY-------   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~-------   75 (197)
                      +.++|+++|.+|+|||||+++|++..+  ...+.+++.......+..++  ..+++|||||+..+......++       
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            579999999999999999999998764  44445554444455556666  4778999999987765543333       


Q ss_pred             --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-C--CCCEEEEeecCCccCC
Q 029215           76 --RGADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRDD  125 (197)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~~  125 (197)
                        ..+|++++|++++... +......|+..+.... .  ..|+++|+||+|+.+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence              2689999999987654 3333245666665543 2  3499999999999643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.81  E-value=6.5e-19  Score=141.20  Aligned_cols=115  Identities=15%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CC------C--CCCCcee-------------eceeEEEEECCeEEEEEEEEc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP------T--DYVPTVF-------------DNFSANVVVDGSTVNLGLWDT   61 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~------~--~~~~t~~-------------~~~~~~~~~~~~~~~l~i~D~   61 (197)
                      +..+|+++|++++|||||+++|+...  +.      +  ....+..             ......+...+  +.+++|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            57899999999999999999998631  10      0  0000000             01112233444  67889999


Q ss_pred             CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ||+..|...+..++..+|++++|+|++++.....  ..+...+...  ++|+++++||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence            9999998888888999999999999988643332  3344444444  8999999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=1.3e-19  Score=148.94  Aligned_cols=114  Identities=20%  Similarity=0.163  Sum_probs=81.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc-------------------eeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-------------------VFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t-------------------~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      .+..+|+++|+.|+|||||+++|..........++                   ........+...+  +.+++|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence            45689999999999999999999843221100010                   0011112233333  77889999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      +.|...+..+++.+|++++|+|+++.......  .++..+...  ++|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            99988888888999999999999887554443  444455544  89999999999986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=8.9e-21  Score=153.89  Aligned_cols=165  Identities=18%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCCCC------------------------------CCCceeeceeEEEEECC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVVVDG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~   51 (197)
                      +..++|+++|++++|||||+++|+..  .+...                              ..+++.+.....+... 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            45789999999999999999999642  11000                              0011111111122222 


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh---HH--HHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~  125 (197)
                       ...+.||||||++.|...+...+..+|++|+|+|++++.   .+  .......+..+...  ++| +++|+||+|+.+.
T Consensus       254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred             -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence             367889999999999998888999999999999998642   11  11102222233333  666 8999999999752


Q ss_pred             cccccCCCCCccccHHHHHHHH-HHhCC----CeEEEeccCCCCCHH--------------HHHHHHHHHHc
Q 029215          126 KQFFIDHPGAVPITTAQGEELR-KLIGS----PAYIECSSKTQQNVK--------------AVFDAAIKVVL  178 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~--------------~~~~~i~~~~~  178 (197)
                      ..      ........++..+. ...++    .+++++||++|.|+.              .+++.|.+.+.
T Consensus       331 ~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          331 SE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             CH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             cH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            11      00001123334444 33454    278999999999998              67777766543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.80  E-value=2.2e-20  Score=140.32  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             HHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHH
Q 029215           21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK   98 (197)
Q Consensus        21 tli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~   98 (197)
                      +|+.++..+.|. ..+.+|.++.+...+..++   .+++||+  +++|+.+++.+++++|++++|||+++++ ++..+ .
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            577888888887 7888888866654432222   6789999  9999999999999999999999999987 67666 8


Q ss_pred             HHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC--CCeEEEeccCCCCCHHHHHHHHHH
Q 029215           99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus        99 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      .|+..+...  ++|+++|+||+|+.+...          +  +++.++++.++  . +++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~~--~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEKN--ELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHT--TCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHC--CCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence            888777664  899999999999965432          2  45677777776  5 8999999999999999988754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.80  E-value=1.1e-18  Score=143.97  Aligned_cols=115  Identities=18%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCC------C------------CCCCceeeceeEEEEECCeEEEEEEEEcCC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP------T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (197)
                      .+..+|+|+|++++|||||+++|+..  .+.      +            ....|.. .....+...+  +.+++|||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG   86 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG   86 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence            46799999999999999999999842  110      0            0111111 1122233444  6788999999


Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +.+|...+..+++.+|++++|+|+++..+++.. ..|.. +...  ++|+++++||+|+...
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence            999988888889999999999999998777665 44543 4444  8999999999999754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=6e-19  Score=145.66  Aligned_cols=172  Identities=11%  Similarity=0.107  Sum_probs=107.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceee--c------eeEEEEE--------------------------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD--N------FSANVVV--------------------------   49 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~--~------~~~~~~~--------------------------   49 (197)
                      ..++|+|+|.+|+|||||+|+|++..+.+ ...+++..  .      .......                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            57899999999999999999999876422 22222210  0      0001111                          


Q ss_pred             --------------------CCeE--EEEEEEEcCCcccc---cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHH
Q 029215           50 --------------------DGST--VNLGLWDTAGQEDY---NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL  104 (197)
Q Consensus        50 --------------------~~~~--~~l~i~D~~G~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  104 (197)
                                          ....  ..+.+|||||....   ...+..+++++|++++|+|++++.+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                0000  24789999996542   33455677889999999999988777766 5565555


Q ss_pred             hhhCCCCCEEEEeecCCccCCcccccCCCCCccc--cHHHHHH-----HHHHhC-------CCeEEEeccC---------
Q 029215          105 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI--TTAQGEE-----LRKLIG-------SPAYIECSSK---------  161 (197)
Q Consensus       105 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~Sa~---------  161 (197)
                      ...  +.|+++|+||+|+........  ......  ..+...+     +....+       ..+++++||+         
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~~~--ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLIDP--DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCSST--TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             Hhh--CCCEEEEEECcccccccccCh--hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            544  789999999999965421000  000000  0001111     111111       1368999999         


Q ss_pred             -----CCCCHHHHHHHHHHHHcCCc
Q 029215          162 -----TQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       162 -----~~~~i~~~~~~i~~~~~~~~  181 (197)
                           ++.|++++++.+.+.+...+
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             chhhhhccCHHHHHHHHHHHHHHhH
Confidence                 99999999999998876543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.79  E-value=3.2e-18  Score=141.30  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh--CCCCC-----------CC------CCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      .+..+|+|+|.+++|||||+++|+.  +.+..           ++      ..++.......+...+  +.+++|||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence            4678999999999999999999985  22210           00      0111111122334444  67889999999


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      .+|...+..+++.+|++++|+|++++.+.... ..|. .+...  +.|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence            99988888888899999999999998776665 4443 34444  8999999999999754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=2.9e-18  Score=127.02  Aligned_cols=118  Identities=16%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC---------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~---------   73 (197)
                      ..++|+++|.+|+|||||+++|++..+.  ....+++.......+...+  ..+.+|||||+..+......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            5799999999999999999999987652  3334443333333444455  67889999999776543221         


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC-C--CCEEEEeecCCccCC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-G--VPIILVGTKLDLRDD  125 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~iiv~nK~D~~~~  125 (197)
                      ....+|++++|+|++.. ++......|+..+..... +  .|+++|+||+|+.+.
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            13468999999998653 343332466666655432 2  699999999999654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.78  E-value=8.5e-18  Score=138.93  Aligned_cols=117  Identities=16%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--CCCCC------------------CCCceeeceeEEEEEC-----CeEEEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------YVPTVFDNFSANVVVD-----GSTVNLGL   58 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~~-----~~~~~l~i   58 (197)
                      .+..+|+|+|+.++|||||+++|+..  .+...                  ...|.... ...+.+.     +..+.++|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence            45789999999999999999999743  11110                  00011111 1112222     23478999


Q ss_pred             EEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      |||||+.+|...+..+++.+|++|+|+|+++....+.. ..| ......  ++|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCcccc
Confidence            99999999988888889999999999999988665554 444 333333  8999999999998654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=3e-18  Score=133.26  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=106.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc----cccccC---CCCCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPL---SYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~---~~~~~~   79 (197)
                      .|+|+|++|+|||||++++..... ...+..++.......+..++ ...+.+||+||....    ..+...   .++.++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999987532 12333333222222333433 245779999997432    222211   245789


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           80 VFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+++++|++ ...+.++ ..+...+..+.   .+.|.++|+||+|+... .           ..+...+..+..+. +++
T Consensus       238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi  302 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL  302 (416)
T ss_dssp             EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred             hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence            999999998 4455555 55555554443   26899999999998643 1           23344444445565 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCch
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      .+||+++.|+++++++|.+.+...+.
T Consensus       303 ~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          303 PVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEECCCccCHHHHHHHHHHHHHhccc
Confidence            99999999999999999999876543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=8.1e-20  Score=137.17  Aligned_cols=162  Identities=13%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC-CCCCCC--------CCcee-eceeEEEEECCeEEEEEEEEcCCc-------ccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~-------~~~   67 (197)
                      ..++|+|+|++|+|||||+++|.+. .+....        .++.. ..........+....+++||++|+       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999998764 433322        11111 111122222344578899999998       444


Q ss_pred             ccccc-------CCC-------------CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           68 NRLRP-------LSY-------------RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        68 ~~~~~-------~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                      ..+..       .++             ..+++++|+.+.+.. +++.....++   .....+.|+++|+||+|+.....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l---~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFM---KAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHH---HHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHH---HHHHhcCCEEEEEEeCCCCCHHH
Confidence            43322       111             123445555553321 2333212233   33334689999999999975322


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                              .....+++.++++.+++ +++++||+++ |++++|.++.+.+...
T Consensus       173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred             --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence                    01234677888889987 9999999999 9999999999988654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=1.4e-19  Score=136.96  Aligned_cols=114  Identities=20%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             EEEEEEEcCCccc-------------ccccccCCCCCCcEEEEEEeCCCHhHH-HHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215           54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKASY-ENVAKKWIPELRHYAPGVPIILVGTK  119 (197)
Q Consensus        54 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (197)
                      ..+.+|||||...             +......++..+|++++|+|.++.... .+. ..+...+...  +.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~~--~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCCC--CCcEEEEEcC
Confidence            4688999999753             233445567889999999997443211 111 2334444443  7999999999


Q ss_pred             CCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe---ccCC---CCCHHHHHHHHHHHHcCCc
Q 029215          120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC---SSKT---QQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Sa~~---~~~i~~~~~~i~~~~~~~~  181 (197)
                      +|+.....          ...+.+.......+. +++++   |+.+   +.|+.++++.+.+.+...+
T Consensus       208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            99975432          112222110011112 55555   4445   7899999999988876543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=2.3e-18  Score=133.98  Aligned_cols=159  Identities=14%  Similarity=0.113  Sum_probs=82.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCC-C-------CCcee-eceeEEEEECCeEEEEEEEEcCCccccc-------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-Y-------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN-------   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~-------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------   68 (197)
                      -.++|+|+|++|+|||||+++|++..+... +       .++.. ......+...+....+.+||++|...+.       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            358899999999999999999998765221 1       11111 1111111223334578899999976531       


Q ss_pred             c------------------cccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215           69 R------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        69 ~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  129 (197)
                      .                  +.+..+.++++.+++|+.+.- .++......|+..+.   .++|+++|+||+|+.....  
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--  184 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--  184 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH--
Confidence            1                  223455566655555554432 234443235666654   3799999999999965432  


Q ss_pred             cCCCCCccccH--HHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          130 IDHPGAVPITT--AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       130 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                              +..  ..+.+.+...++ +++++|++++.+++++|..+.+.+
T Consensus       185 --------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 --------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             --------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred             --------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence                    333  677778888887 899999999999999998888764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=2.7e-19  Score=137.72  Aligned_cols=154  Identities=20%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-ece-----------------------------------------
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF-----------------------------------------   43 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~-----------------------------------------   43 (197)
                      ..+|+|+|.+|||||||+++|.+..+.+...++.. ...                                         
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999776333222110 000                                         


Q ss_pred             -----------eEEEEE-CCeEEEEEEEEcCCcccc-------------cccccCCCCCCcEEEEEEeCCCHhHHHHHHH
Q 029215           44 -----------SANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVAK   98 (197)
Q Consensus        44 -----------~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   98 (197)
                                 ...+.+ ......+.+|||||...+             ..+...++.++|++++++|.++.+.......
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~  193 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI  193 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence                       000010 011235789999998776             3345567789999999998765432221112


Q ss_pred             HHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHH
Q 029215           99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA  172 (197)
Q Consensus        99 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  172 (197)
                      .+...+...  +.|+++|+||+|+.....          ...+.+..+....+. +|+++++..+.++++.+..
T Consensus       194 ~l~~~~~~~--~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          194 KISREVDPS--GDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHSCTT--CTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHhccc--CCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence            333333332  789999999999976433          233334444444555 7889999988887765544

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.75  E-value=4.4e-18  Score=131.99  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEE--E-------------------EECC-eEEEEEEEEcCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN--V-------------------VVDG-STVNLGLWDTAG   63 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~--~-------------------~~~~-~~~~l~i~D~~G   63 (197)
                      ++|+++|.+|||||||+|+|++... ..+++.++.......  +                   .+++ ..+.++||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763 234444442222211  1                   1222 246799999999


Q ss_pred             cccc----ccccc---CCCCCCcEEEEEEeCCCH
Q 029215           64 QEDY----NRLRP---LSYRGADVFILAFSLISK   90 (197)
Q Consensus        64 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   90 (197)
                      +...    ..+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8542    22322   456899999999999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=3e-17  Score=117.95  Aligned_cols=156  Identities=15%  Similarity=0.072  Sum_probs=95.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-------------eEEEEEC------------------CeE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVD------------------GST   53 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~------------------~~~   53 (197)
                      +..+|+++|.+|||||||+++|.................             .....++                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            467999999999999999999986421111000000000             0001111                  112


Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.+|||+|+......   +...++.+++|+|+++.....   ..+...   .  +.|+++|+||+|+.+...      
T Consensus       109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~---~~~~~~---~--~~~~iiv~NK~Dl~~~~~------  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV---EKHPEI---F--RVADLIVINKVALAEAVG------  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH---HHCHHH---H--HTCSEEEEECGGGHHHHT------
T ss_pred             CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh---hhhhhh---h--hcCCEEEEecccCCcchh------
Confidence            56779999996221111   112467899999997754211   111111   1  578999999999864321      


Q ss_pred             CCccccHHHHHHHHHHhC-CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          134 GAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                          ...++..+..+..+ ..+++++||++|.|++++++++.+.+....
T Consensus       172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence                24455556555543 348999999999999999999999886544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.70  E-value=3.5e-16  Score=125.91  Aligned_cols=115  Identities=13%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC------------------CCCCC-----CCCceeeceeEEEEECCeEEEEEEEEc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN------------------TFPTD-----YVPTVFDNFSANVVVDGSTVNLGLWDT   61 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~------------------~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~   61 (197)
                      +.=+|+|+|+.++|||||..+|+..                  .+.+.     ..+.+...-...+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            4678999999999999999998621                  11110     00001111122344555  77889999


Q ss_pred             CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ||+.+|.....+.++-+|++|+|+|+.++-..+.. ..| .....+  ++|.++++||+|....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHHh--CCceEEEEecccchhc
Confidence            99999999888899999999999999988666654 444 455555  8999999999998653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1.3e-15  Score=116.26  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCccccc-
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN-   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~-   68 (197)
                      .++|+++|.+|+|||||+++|++..+ ..+++.++.......+.+.+.               ...+++|||||+..+. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            37899999999999999999998764 233444332222223334432               1468899999998753 


Q ss_pred             ---ccccC---CCCCCcEEEEEEeCCC
Q 029215           69 ---RLRPL---SYRGADVFILAFSLIS   89 (197)
Q Consensus        69 ---~~~~~---~~~~~~~~i~v~d~~~   89 (197)
                         .+...   +++++|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               33333   3678999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.68  E-value=4.1e-18  Score=130.76  Aligned_cols=157  Identities=22%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC------Cce-----------------------ee-----------c---
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTV-----------------------FD-----------N---   42 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~t~-----------------------~~-----------~---   42 (197)
                      ..+|+|+|.+++|||||+++|++..+.+...      ++.                       ..           .   
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            5799999999999999999999887642211      110                       00           0   


Q ss_pred             ----e---eEEEEEC-CeEEEEEEEEcCCccc-------------ccccccCCCCCC-cEEEEEEeCCCHhHHHHHHHHH
Q 029215           43 ----F---SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGA-DVFILAFSLISKASYENVAKKW  100 (197)
Q Consensus        43 ----~---~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~  100 (197)
                          +   ...+.+. .....+.||||||...             +..+...++..+ ++++++.|++....-.+. ..+
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~i  189 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKV  189 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HHH
Confidence                0   0001111 1125688999999642             223344455444 556666676653222222 234


Q ss_pred             HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH--HHHHhCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215          101 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE--LRKLIGSPAYIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       101 ~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      +..+...  +.|+++|+||+|+.+...          ...+....  +....++.+++++||+++.|++++++++.+
T Consensus       190 ~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHCTT--CTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHhCcC--CCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            4444433  899999999999975432          01111110  001123346778999999999999999876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.67  E-value=6.8e-18  Score=121.73  Aligned_cols=153  Identities=17%  Similarity=0.090  Sum_probs=91.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-------------EEEEEC-Ce------------------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------------ANVVVD-GS------------------   52 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~------------------   52 (197)
                      +.++|+++|.+|||||||+++|....+...+.++....+.             ..+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            5689999999999999999999976554433344322211             112221 11                  


Q ss_pred             -EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC
Q 029215           53 -TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        53 -~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  131 (197)
                       ...+.++|++|.-.....   +-...+..+.++|+.........   ....   .  +.|.++|+||+|+.+...    
T Consensus       117 ~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~--~~~~iiv~NK~Dl~~~~~----  181 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK---HPGI---M--KTADLIVINKIDLADAVG----  181 (226)
T ss_dssp             GGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT---CHHH---H--TTCSEEEEECGGGHHHHT----
T ss_pred             CCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh---hhhH---h--hcCCEEEEeccccCchhH----
Confidence             113456666663111100   11123455667775332111110   0111   1  578899999999865322    


Q ss_pred             CCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          132 HPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                            ...+++.++++..+ ..+++++||++|.|++++|+++.+.+.
T Consensus       182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence                  34566666666653 348999999999999999999988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.67  E-value=7e-17  Score=123.97  Aligned_cols=107  Identities=16%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.||||||....   ....+..+|++++|+|.+..+....+ .       ....+.|+++|+||+|+.....      
T Consensus       172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------  234 (355)
T 3p32_A          172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------  234 (355)
T ss_dssp             CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred             CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence            56789999995321   11234789999999998776544322 1       1112569999999999864321      


Q ss_pred             CCccccHHHHHHHHHHhC------CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          134 GAVPITTAQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                        ......+........+      ..+++++||++|.|+++++++|.+.+..
T Consensus       235 --~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 --ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             --HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              0001111222211121      2489999999999999999999988753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.65  E-value=2e-16  Score=133.06  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=84.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhC--CC----------CCC-----C-CCceeec-eeEEEE------------ECC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TF----------PTD-----Y-VPTVFDN-FSANVV------------VDG   51 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~----------~~~-----~-~~t~~~~-~~~~~~------------~~~   51 (197)
                      ..+..+|+|+|+.++|||||+++|+..  ..          .+.     . ..|+... ....+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            345789999999999999999999863  11          110     0 0111111 111122            134


Q ss_pred             eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      ..+.+++|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.... ..  ++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~~--~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQAL-GE--RIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHH-HT--TCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-Hc--CCCeEEEEECCCcc
Confidence            468899999999999999988899999999999999998887776 5554433 33  79999999999986

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=1.7e-16  Score=127.81  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=77.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC---CCCCCceeeceeEEE-------EEC-----------------------C
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANV-------VVD-----------------------G   51 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~t~~~~~~~~~-------~~~-----------------------~   51 (197)
                      ...+|+|+|.+|+|||||+|+|++..+.   ....+++ .......       ..+                       +
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T-~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT-DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC-CSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc-ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            4689999999999999999999988763   1222222 1110000       000                       0


Q ss_pred             eE---------EEEEEEEcCCccc-----------ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC
Q 029215           52 ST---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV  111 (197)
Q Consensus        52 ~~---------~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (197)
                      ..         ..+.||||||...           |...+..++..+|++++|+|+++....... ..++..+...  +.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--ED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CC
Confidence            00         2478999999864           333444556789999999999875433443 5566666554  68


Q ss_pred             CEEEEeecCCccCC
Q 029215          112 PIILVGTKLDLRDD  125 (197)
Q Consensus       112 p~iiv~nK~D~~~~  125 (197)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999999653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.63  E-value=9.9e-17  Score=122.72  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=61.3

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.++||+|....   .....+.+|++++|+|++++...+.. ..   .+    -..|.++|+||+|+.+...      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence            46779999995321   12235689999999999876433222 11   11    1568899999999853210      


Q ss_pred             CCccccHHHHHHHHHH---------hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          134 GAVPITTAQGEELRKL---------IGSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                          . ......+...         ...++++.+||++|.|+++++++|.+.+.
T Consensus       230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                0 0111222211         11247899999999999999999988753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.62  E-value=1.1e-14  Score=111.61  Aligned_cols=83  Identities=17%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECC-------------------eEEEEEEEEcCCccc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED   66 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~i~D~~G~~~   66 (197)
                      ++|+++|.+|+|||||++++++... ..+++.++...........+                   ....+++|||||+..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999987542 23333333211111222221                   224688999999876


Q ss_pred             ccc----ccc---CCCCCCcEEEEEEeCCC
Q 029215           67 YNR----LRP---LSYRGADVFILAFSLIS   89 (197)
Q Consensus        67 ~~~----~~~---~~~~~~~~~i~v~d~~~   89 (197)
                      +.+    +..   .+++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            542    211   23678999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.60  E-value=5e-16  Score=118.56  Aligned_cols=104  Identities=18%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.||||||...+...   ....+|++++|+|++..+.+... ..   ..  .  +.|.++|+||+|+.....      
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~--~--~~p~ivv~NK~Dl~~~~~------  211 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL--M--EVADLIVINKDDGDNHTN------  211 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH--H--HHCSEEEECCCCTTCHHH------
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh--h--cccCEEEEECCCCCChHH------
Confidence            56889999996543322   35789999999999765432211 10   00  1  468899999999864311      


Q ss_pred             CCcccc--HHHHHHHHHHhC------CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          134 GAVPIT--TAQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       134 ~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                          ..  ..+.+......+      ..+++++||++|.|+++++++|.+.+.
T Consensus       212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                11  112222222222      347899999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.60  E-value=5.6e-15  Score=108.73  Aligned_cols=118  Identities=12%  Similarity=-0.051  Sum_probs=69.0

Q ss_pred             EEEEEEEcCCccccccccc------CCCCCCcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccC
Q 029215           54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      +.+.+|||||+........      ..+.. +++++++|+....+..+....+   .......  +.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc--CCCeEEEEecccccc
Confidence            5788999999876533221      13456 8899999876433322221111   1112222  789999999999865


Q ss_pred             CcccccCCCCCccc--cHHHH------------------HHHHHHhCC-CeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          125 DKQFFIDHPGAVPI--TTAQG------------------EELRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       125 ~~~~~~~~~~~~~~--~~~~~------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ......    ....  ..+..                  .++++.++. .+++++||+++.|++++++++.+.+.
T Consensus       186 ~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEKER----HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHH----HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHH----HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            321000    0000  00000                  011234443 27899999999999999999988763

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.59  E-value=4.8e-16  Score=127.37  Aligned_cols=173  Identities=14%  Similarity=0.081  Sum_probs=109.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh--CCCCC----CCCCcee-----------eceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS--NTFPT----DYVPTVF-----------DNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~--~~~~~----~~~~t~~-----------~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      .-||+|+|+.++|||||..+|+.  +....    ....+..           +..+..+......+.++++|||||.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            45799999999999999999862  22111    0000000           0011111222233678899999999999


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--------cC---------
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--------ID---------  131 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--------~~---------  131 (197)
                      ....+.++.+|++|+|+|+..+-..+.. ..| .....+  ++|.++++||+|....+...        ..         
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~-~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~  157 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILF-HALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV  157 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHH-HHH-HHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence            9888899999999999999987555543 333 445555  79999999999986542110        00         


Q ss_pred             ----CCCCccc-cHH-----------------------------HHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          132 ----HPGAVPI-TTA-----------------------------QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       132 ----~~~~~~~-~~~-----------------------------~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                          ....... ..+                             ............|++..||+++.|++.+++.+.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~  237 (638)
T 3j25_A          158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF  237 (638)
T ss_dssp             CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred             EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence                0000000 000                             000111122345888899999999999999999988


Q ss_pred             cCCch
Q 029215          178 LQPPK  182 (197)
Q Consensus       178 ~~~~~  182 (197)
                      ..+..
T Consensus       238 p~p~~  242 (638)
T 3j25_A          238 YSSTH  242 (638)
T ss_dssp             CCSGG
T ss_pred             cCccc
Confidence            76643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.7e-14  Score=106.73  Aligned_cols=143  Identities=12%  Similarity=0.071  Sum_probs=91.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~   77 (197)
                      ..+|+++|.|+||||||+|+|++... ..+++.|+.+.....+.+.+  ..++++||||.....+..       -..++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999997543 45677777777777788888  467799999975332211       123467


Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +|++++|+|++++..-.+....-+..+.....+.|.++++||.|...-..  .........+.++.+.+...+..
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc
Confidence            99999999999874322221222222222224788999999999743211  01111122455666666665543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.56  E-value=8.8e-14  Score=115.41  Aligned_cols=116  Identities=18%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC--------CCCCC-----C------CCceeeceeEEEEEC-----CeEEEEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD-----Y------VPTVFDNFSANVVVD-----GSTVNLGLWD   60 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~-----~------~~t~~~~~~~~~~~~-----~~~~~l~i~D   60 (197)
                      +.=||+|+|+.++|||||..+|+..        ...+.     +      .+.+.......+.+.     ...+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            4568999999999999999998621        11110     0      000000011122222     1358899999


Q ss_pred             cCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      ||||.+|.....+.++-+|++|+|+|+..+-..+.. ..|. .....  ++|.++++||+|...
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~-~a~~~--~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWR-QANKY--GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHHH--TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHH-HHHHc--CCCeEEEEccccccC
Confidence            999999999888889999999999999987665554 4443 44444  799999999999754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=5.5e-15  Score=121.96  Aligned_cols=157  Identities=20%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceee-------------------------------------------
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD-------------------------------------------   41 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~-------------------------------------------   41 (197)
                      ..+|+|+|.+++|||||+|+|++..+.+ ....++..                                           
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            4699999999999999999999876522 11111100                                           


Q ss_pred             --------ceeEEEEECCeEEEEEEEEcCCccccc-------------ccccCCC-CCCcEEEEEEeCCCHhHHHHHHHH
Q 029215           42 --------NFSANVVVDGSTVNLGLWDTAGQEDYN-------------RLRPLSY-RGADVFILAFSLISKASYENVAKK   99 (197)
Q Consensus        42 --------~~~~~~~~~~~~~~l~i~D~~G~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~   99 (197)
                              .....+...+ ...+.|+||||.....             .+...++ ..+|++++|+|++......+. ..
T Consensus       131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~  208 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  208 (772)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred             CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence                    0001111111 1246799999964311             1122222 578999999999875333332 24


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-H-HHHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          100 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-L-RKLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       100 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      ++..+...  +.|+++|+||+|+.....          ...+.... . ....++.+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            45555544  799999999999976432          11111110 0 001234467789999999999999998873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.52  E-value=4.9e-14  Score=105.80  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             cccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc-HH
Q 029215           64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT-TA  141 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~  141 (197)
                      ++++..+.+.+++++|++++|+|+++++ ++..+ ..|+..+...  ++|+++|+||+|+.+...          +. .+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~  132 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE  132 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence            7788888888999999999999999986 77766 7887776664  899999999999965321          22 34


Q ss_pred             HHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHH
Q 029215          142 QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  174 (197)
                      +...+++..+. +++++||++|.|++++++.+.
T Consensus       133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence            55667777787 899999999999999998764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.43  E-value=6.6e-14  Score=97.92  Aligned_cols=106  Identities=8%  Similarity=-0.042  Sum_probs=69.6

Q ss_pred             CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhC--CCCCEEEEeecC-CccCCcccccCCCCC
Q 029215           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYA--PGVPIILVGTKL-DLRDDKQFFIDHPGA  135 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~p~iiv~nK~-D~~~~~~~~~~~~~~  135 (197)
                      +||+.++.+|++|++++|++|||+|.+|.+.+. ...++   ...+.+..  .+.|++|++||. |+...          
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A----------  178 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----------  178 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB----------
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC----------
Confidence            488899999999999999999999999986544 32444   44444432  589999999995 67443          


Q ss_pred             ccccHHHHHHHHHH----hCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          136 VPITTAQGEELRKL----IGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       136 ~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                        .+..++.+....    ..+ .+..|||++|+|+.+-++|+.+.+..++
T Consensus       179 --ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          179 --MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             --CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             --CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence              333333322111    122 4678999999999999999998776544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.42  E-value=1.4e-13  Score=104.71  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.|+||+|...-..   .....+|.+++++|.+..+..+.+ ...   +.    ..|.++++||+|+.....      
T Consensus       148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~------  210 (337)
T 2qm8_A          148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGER------  210 (337)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHH------
T ss_pred             CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchh------
Confidence            5677999999643211   224678999999998755332211 111   11    235678889999754221      


Q ss_pred             CCccccHHHHHHHHHHh---C------CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          134 GAVPITTAQGEELRKLI---G------SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                          ......+.+....   .      .++++.+||+++.|++++++.|.+...
T Consensus       211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                2222233333221   1      247889999999999999999988653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=101.23  Aligned_cols=88  Identities=17%  Similarity=0.094  Sum_probs=49.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCccccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~   68 (197)
                      ..++|+++|.+|+|||||+++|.+..+. .+++.++.......+.+.+.               ...+++|||||...+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4578999999999999999999987542 23333333333333434332               1358899999987654


Q ss_pred             c-------cccCCCCCCcEEEEEEeCCCHhH
Q 029215           69 R-------LRPLSYRGADVFILAFSLISKAS   92 (197)
Q Consensus        69 ~-------~~~~~~~~~~~~i~v~d~~~~~s   92 (197)
                      +       .+..+++++|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3       23345678999999999986543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.30  E-value=2.4e-12  Score=94.30  Aligned_cols=107  Identities=8%  Similarity=-0.053  Sum_probs=73.8

Q ss_pred             cCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHH---HHHHHhhh--CCCCCEEEEeec-CCccCCcccccCCCC
Q 029215           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK---WIPELRHY--APGVPIILVGTK-LDLRDDKQFFIDHPG  134 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~--~~~~p~iiv~nK-~D~~~~~~~~~~~~~  134 (197)
                      .+||+..+.+|++|+++.|++|||+|.+|++.+... .+   +...+.+.  ..+.|++|++|| .|+...         
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak-~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---------  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQ-DEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHH-HHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHH-HHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence            468899999999999999999999999998754422 32   33444332  358999999996 587543         


Q ss_pred             CccccHHHHHHHHHH----hCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          135 AVPITTAQGEELRKL----IGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                         .+..++.+....    ..+ .+..|||.+|+|+.+-++|+.+.+..++
T Consensus       264 ---ms~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          264 ---MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             ---CCHHHHHHHcCCccCCCcE-EEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence               333333322111    122 4668999999999999999999886554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=1.4e-10  Score=89.60  Aligned_cols=85  Identities=22%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCcccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~   67 (197)
                      ...+++++|++|+|||||++.|++...  ..+++.++.......+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457899999999999999999998654  344455454444445555541               135789999996543


Q ss_pred             cc-------cccCCCCCCcEEEEEEeCCC
Q 029215           68 NR-------LRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        68 ~~-------~~~~~~~~~~~~i~v~d~~~   89 (197)
                      .+       .+...++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22       12233578999999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.08  E-value=1.6e-10  Score=88.93  Aligned_cols=98  Identities=17%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      ..+.|..+...+.+.++++++|+|+++..      ..|...+.+...+.|+++|+||+|+.+..           ...+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence            45678888888888899999999999863      35555555555689999999999997542           22233


Q ss_pred             HH----HHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHH
Q 029215          143 GE----ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       143 ~~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ..    .+++..+..  +++.+||++|.|++++++.+.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            33    335566652  689999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.02  E-value=7.1e-09  Score=80.67  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC----C-ceeeceeEEEEECCeEEEEEEEEcCCccccc------------
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----P-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------------   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------   68 (197)
                      .++++|+|++|+|||||++.|.+..+.+...    + .............+....+.++|++|.....            
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4679999999999999999998765422111    1 1111111112222223467899999853210            


Q ss_pred             -------------cccc--CCCCCC--cE-EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           69 -------------RLRP--LSYRGA--DV-FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        69 -------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                                   ....  .....+  |+ ++|+.|...+-+..+.  .++..+.   .+.|+++|.||+|....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence                         0000  012233  33 5556666554433333  4444444   48999999999998643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.99  E-value=2.8e-10  Score=90.53  Aligned_cols=152  Identities=13%  Similarity=0.066  Sum_probs=85.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHh------hCCC----CCCCCCcee-------e--ceeEEEE----------------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYT------SNTF----PTDYVPTVF-------D--NFSANVV----------------   48 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~------~~~~----~~~~~~t~~-------~--~~~~~~~----------------   48 (197)
                      .....|+++|.+||||||++++|.      +...    .+.+.+...       .  .......                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346789999999999999999987      2211    111121110       0  0110000                


Q ss_pred             ECCeEEEEEEEEcCCcccccc-cccC---C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029215           49 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD  121 (197)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D  121 (197)
                      .....+.+.|+||||...... ++..   .  +..+|.+++|+|++........    ...+..   ..|+ .+|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~---~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD---KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH---HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh---hcCceEEEEeCCc
Confidence            000235678999999753221 1100   0  1268999999999876432211    222222   2575 89999999


Q ss_pred             ccCCcccccCCCCCccccHHHHHHHHHHhCC-----------------CeEEEeccCCCCC-HHHHHHHHHHH
Q 029215          122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGS-----------------PAYIECSSKTQQN-VKAVFDAAIKV  176 (197)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~-i~~~~~~i~~~  176 (197)
                      ......              .+.......+.                 .+.+.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            864321              12222233333                 1223479999999 99999998876

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.96  E-value=4.5e-10  Score=86.49  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      .++.|.++...+++.++++++|+|+++.++      .|...+.....+.|+++|+||+|+.+..           ...+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~  119 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK  119 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence            477888888888888999999999999763      3333334444588999999999997642           22233


Q ss_pred             HHH----HHHHhCC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          143 GEE----LRKLIGS--PAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       143 ~~~----~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ..+    .++..+.  .+++.+||++|.|++++++.+.+..
T Consensus       120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            333    3455565  3688999999999999999998765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.93  E-value=7.7e-11  Score=90.75  Aligned_cols=140  Identities=10%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC------CC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc----ccC-
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN------TF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----RPL-   73 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~----~~~-   73 (197)
                      ..+++++|.+|+|||||+|+|++.      .. ....++++...  ..+.+...   +.++||||.......    ... 
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999875      21 12223333221  12223322   579999996432211    111 


Q ss_pred             ---C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215           74 ---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK  148 (197)
Q Consensus        74 ---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                         .  ....+.++++++....-.+..+ .. +..+..  .+.|+++++||.|..+...           .......+.+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~  301 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYAN  301 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHH
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHH
Confidence               1  1568899999987432111111 11 112222  2789999999999876442           2333344555


Q ss_pred             HhCCCeEEEeccCCCCCH
Q 029215          149 LIGSPAYIECSSKTQQNV  166 (197)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i  166 (197)
                      ..+. .+.+.++....++
T Consensus       302 ~~g~-~l~p~~~~~~~~~  318 (369)
T 3ec1_A          302 QLGE-LLSPPSKRYAAEF  318 (369)
T ss_dssp             HBTT-TBCSSCGGGTTTC
T ss_pred             hcCC-ccCCCCchhhhhc
Confidence            5665 5555555544443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.92  E-value=6.7e-09  Score=76.58  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCC---------CCCceeeceeEEEEECC--eEEEEEEEEcCCcccccc-----
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSANVVVDG--STVNLGLWDTAGQEDYNR-----   69 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~--~~~~l~i~D~~G~~~~~~-----   69 (197)
                      .++++++|++|+|||||++.+.+......         ...+.. .....+....  -...+.++|++|......     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            58999999999999999999986422110         011110 0011111122  123677999998421100     


Q ss_pred             --c---------------------ccCCCCCCcEEEEEEeCC-CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           70 --L---------------------RPLSYRGADVFILAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        70 --~---------------------~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                        +                     .+-.+..+++.++++|.. .+-+..+  ..++..+..   ..++++|++|+|....
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence              0                     011233478889999854 2222222  234444443   3899999999998653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=2.7e-08  Score=77.33  Aligned_cols=167  Identities=14%  Similarity=0.068  Sum_probs=87.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCC----CCceeeceeEEEEECCeEEEEEEEEcCCcccccc-----cccCCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYR   76 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~   76 (197)
                      ...++++|++|+|||||++.+.+-.....-    ............ .....-.+.+||++|......     +....+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~-q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec-cccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            458999999999999999999873221110    000000001111 111111467999998532111     1111233


Q ss_pred             CCcEEEEEEeCC--CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc-CCCCCccccHHHHHHHHH----H
Q 029215           77 GADVFILAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI-DHPGAVPITTAQGEELRK----L  149 (197)
Q Consensus        77 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~  149 (197)
                      ..+..++ ++..  ....     ..+...+...  +.|+++|.||.|+.--.++.. ..+.......+..+++..    .
T Consensus       148 ~~~~~~~-lS~G~~~kqr-----v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKND-----IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GCSEEEE-EESSCCCHHH-----HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHH-----HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3455554 6765  3222     2333344444  789999999999742111100 001111112233344431    2


Q ss_pred             hC--CCeEEEecc--CCCCCHHHHHHHHHHHHcCCc
Q 029215          150 IG--SPAYIECSS--KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       150 ~~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .+  ....+.+|+  ..+.|++++.+.+.+.+...+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            22  336788999  556679999999998876544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.82  E-value=1.6e-10  Score=88.96  Aligned_cols=111  Identities=12%  Similarity=0.115  Sum_probs=63.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC--------CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc------
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP------   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~------   72 (197)
                      .+++++|.+|+|||||+|+|++....        ...++++..  ...+.+.+.   +.++||||......+..      
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999875211        122222211  122223332   67999999643321110      


Q ss_pred             --C--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215           73 --L--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        73 --~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  126 (197)
                        .  .....+.++++++....-.+..+ . .+..+..  .+.|+++++||+|..+..
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcce-E-EEEEecC--CCceEEEEecCccccccc
Confidence              0  13567888888887422111111 1 1112222  278999999999997653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=5.8e-09  Score=77.38  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             EEEcCCcc-cccccccCCCCCCcEEEEEEeCCCHhHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC
Q 029215           58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        58 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  135 (197)
                      +-..||+. .........+.++|+++.|+|+.++.+... ....|+       .++|.++|+||+|+.+..         
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~---------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA---------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence            44578875 233334456788999999999999866542 113332       389999999999996421         


Q ss_pred             ccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          136 VPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                         ..+...++.+..+. +++.+||+++.|++++++.+.+.+..
T Consensus        67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHH
Confidence               11222333344466 88999999999999999988877653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.56  E-value=7.2e-08  Score=71.50  Aligned_cols=56  Identities=25%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      ..++++++|.+|+|||||+|++.+...  ....++++....  .+....   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            468999999999999999999997653  222223332111  122222   46799999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.54  E-value=2.8e-07  Score=72.07  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=74.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh-----C-CC----CCCCCCce-------eeceeEEEEE-C----------------
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------FDNFSANVVV-D----------------   50 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~-----~-~~----~~~~~~t~-------~~~~~~~~~~-~----------------   50 (197)
                      ++..|+++|++|+||||++..|..     + ..    .+.+.+..       .......+.. .                
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            367899999999999999977752     1 11    12221210       0000000110 0                


Q ss_pred             -CeEEEEEEEEcCCcccccc-cc---c--CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           51 -GSTVNLGLWDTAGQEDYNR-LR---P--LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        51 -~~~~~l~i~D~~G~~~~~~-~~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                       ...+.+.|+||+|...... +.   .  .....+|.+++|+|++........    ...+.+.  -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence             0126778999999543221 00   0  112257899999999876443322    1233322  23557899999986


Q ss_pred             CCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ..              ...+.......+. |+..++.
T Consensus       253 ~~--------------gG~~ls~~~~~g~-PI~fig~  274 (443)
T 3dm5_A          253 AK--------------GGGALSAVAATGA-PIKFIGT  274 (443)
T ss_dssp             SS--------------HHHHHHHHHTTCC-CEEEEEC
T ss_pred             cc--------------ccHHHHHHHHHCC-CEEEEEc
Confidence            43              2234555556676 6666654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.52  E-value=4.8e-08  Score=71.66  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=34.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (197)
                      ++++++|.+|+|||||+|+|.+.....  ...+++..  ...+....   .+++|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG--IQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CC--SCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccc--eEEEEeCC---CEEEEECCCccc
Confidence            689999999999999999999765421  12222111  11122222   467999999753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.51  E-value=3.3e-08  Score=77.45  Aligned_cols=64  Identities=20%  Similarity=0.153  Sum_probs=39.2

Q ss_pred             EEEEEEEcCCcccccc-cc-----cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCccC
Q 029215           54 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLDLRD  124 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~D~~~  124 (197)
                      +.+.|+||||...... +.     ...+..+|.+++|+|++....   . ......+.   +.. | ..+|+||.|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence            5678999999654211 10     112336899999999876542   1 11222222   245 6 789999999853

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.43  E-value=1.9e-07  Score=69.91  Aligned_cols=92  Identities=22%  Similarity=0.226  Sum_probs=62.8

Q ss_pred             cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccc--cHHHHHH
Q 029215           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI--TTAQGEE  145 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~  145 (197)
                      ..+.+..+.++|.+++|+|+.++..-......++......  ++|.++|+||+|+.+...          .  ..+....
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~  144 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAE  144 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHH
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHH
Confidence            3445556789999999999987654333436665544444  899999999999976421          0  0123334


Q ss_pred             HHHHhCCCeEEEeccCCCCCHHHHHHH
Q 029215          146 LRKLIGSPAYIECSSKTQQNVKAVFDA  172 (197)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~  172 (197)
                      ..+..|. +++.+||.++.|++++++.
T Consensus       145 ~y~~~g~-~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          145 DYRNIGY-DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred             HHHhCCC-eEEEEecCCCCCHHHHHhh
Confidence            4445576 8899999999888776543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.42  E-value=2.5e-07  Score=74.93  Aligned_cols=63  Identities=19%  Similarity=0.113  Sum_probs=39.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEE----E-CCeEEEEEEEEcCCccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV----V-DGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~l~i~D~~G~~~   66 (197)
                      .+..+|+|+|.+|+|||||+|+|++....-...+++.........    . ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456899999999999999999999865321223332111111111    1 11124567999999754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.32  E-value=1.8e-07  Score=68.59  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=59.7

Q ss_pred             cCCcccc-cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc
Q 029215           61 TAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT  139 (197)
Q Consensus        61 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  139 (197)
                      .|||... .......+.++|+++.|+|+.++.+....  .    +. .. ++|.++|+||+|+.+..            .
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence            4666532 12334567889999999999988655421  1    11 11 78999999999996531            1


Q ss_pred             HHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215          140 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      .+...++.+..+. ++ .+||+++.|++++++.+.+.
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            1222334444566 67 99999999999998876543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.21  E-value=2.4e-06  Score=66.79  Aligned_cols=86  Identities=15%  Similarity=0.054  Sum_probs=51.6

Q ss_pred             EEEEEEEcCCccc--ccc-cc---cC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           54 VNLGLWDTAGQED--YNR-LR---PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        54 ~~l~i~D~~G~~~--~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +.+.++||||...  ... +.   ..  ....++.+++|+|+...+.......    .+.+.  -.+..+|+||.|....
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhcc--cCCcEEEEeccccccc
Confidence            5677999999543  111 10   00  0124689999999987644333322    33322  2457899999998642


Q ss_pred             cccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                                    ...+.......+. |+..++.
T Consensus       254 --------------~G~als~~~~~g~-Pi~fig~  273 (433)
T 3kl4_A          254 --------------GGGALSAVVATGA-TIKFIGT  273 (433)
T ss_dssp             --------------HHHHHHHHHHHTC-EEEEEEC
T ss_pred             --------------chHHHHHHHHHCC-CEEEEEC
Confidence                          2345566666776 7776665

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.15  E-value=3.4e-06  Score=62.95  Aligned_cols=91  Identities=13%  Similarity=0.066  Sum_probs=53.8

Q ss_pred             EEEEEEEcCCccc--ccc-ccc-----CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccC
Q 029215           54 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (197)
Q Consensus        54 ~~l~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~  124 (197)
                      +.+.++||||...  ... +..     .....+|.+++|+|+.......   . ....+..   ..| ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~-~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---D-LASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---H-HHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---H-HHHHHHh---hCCCCEEEEeCCCCCc
Confidence            5678999999765  211 110     1233689999999987542221   1 1222222   356 678999999753


Q ss_pred             CcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215          125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA  168 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (197)
                      .              ...+..+....+. |+..++  .|+++++
T Consensus       254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence            2              2345566777776 776665  4555543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.05  E-value=3.3e-06  Score=69.11  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.99  E-value=4.7e-05  Score=58.09  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=54.6

Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccc-cHHHHHHHHHHhCCC
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI-TTAQGEELRKLIGSP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  153 (197)
                      ..++|.+++|... ++..-......++......  ++|.++|+||+|+.+...          . ..+.........|. 
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----------~~~~~~~~~~y~~~G~-  193 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----------MDFVNEQMDIYRNIGY-  193 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----------HHHHHHHHHHHHTTTC-
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----------HHHHHHHHHHHHhCCC-
Confidence            5789999988654 4543222335555444444  789999999999965321          0 01112223334576 


Q ss_pred             eEEEeccCCCCCHHHHHHHH
Q 029215          154 AYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i  173 (197)
                      +++.+||.++.|++++...+
T Consensus       194 ~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          194 RVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CEEECBTTTTBTHHHHHHHH
T ss_pred             cEEEEecCCCcCHHHHHHhc
Confidence            78999999999999887653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.92  E-value=1.7e-07  Score=74.41  Aligned_cols=108  Identities=16%  Similarity=-0.006  Sum_probs=60.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCccc--ccccc--------cC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED--YNRLR--------PL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~--~~~~~--------~~   73 (197)
                      ....|+++|.+|+||||+.++|....... ...+..... .......+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999887532100 011110000 00000011112335789888732  22222        34


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEe
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG  117 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~  117 (197)
                      ++...++.++|+|.++.. .... ..|...+...  ..+++.+-
T Consensus       117 ~l~~~~G~~vV~D~tn~~-~~~R-~~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTT-RERR-AMIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCCS-HHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCCC-HHHH-HHHHHHHHhc--CCcEEEEE
Confidence            454567889999999873 4443 6777766665  44555444

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.91  E-value=2.2e-05  Score=59.31  Aligned_cols=91  Identities=15%  Similarity=0.092  Sum_probs=50.6

Q ss_pred             EEEEEEcCCcccccccccCC------CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215           55 NLGLWDTAGQEDYNRLRPLS------YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  128 (197)
                      .+.++|++|...........      .-.+|-.+++.|..........    ...+...  --...+++||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~----~~~~~~~--~~it~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ----ARQFNEA--VKIDGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH----HHHHHHH--SCCCEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH----HHHHHHh--cCCCEEEEeCcCCccc---
Confidence            45579999964322111000      1136888999998766432222    2223222  1234788899997432   


Q ss_pred             ccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215          129 FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA  168 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (197)
                                 ...+.......+. |+..++  +|+++++
T Consensus       284 -----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 -----------GGAALSISYVIDA-PILFVG--VGQGYDD  309 (328)
T ss_dssp             -----------CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred             -----------hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence                       2345567777787 776666  5555543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.70  E-value=8.2e-05  Score=58.43  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +..-|.|+|++++|||||+|+|++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhh
Confidence            456789999999999999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.56  E-value=0.0005  Score=53.90  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=37.1

Q ss_pred             EEEEEEEcCCcccccc-ccc-----CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccC
Q 029215           54 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~  124 (197)
                      +.+.|+||||...... +..     ..+..++.+++|+|+.........    ...+..   ..+ .-+|+||.|...
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~---~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE---ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH---HSCCCCEEEECTTSSS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc---cCCCeEEEEecCCCCc
Confidence            6678999999644321 111     113367899999998765332222    122222   244 346889999753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.56  E-value=5.2e-05  Score=52.20  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999888753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.49  E-value=6.5e-05  Score=51.69  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|+|++|||||||++.|...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.48  E-value=6.7e-05  Score=52.81  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |.......|+|+|++|||||||++.+.+
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            5555667899999999999999988765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=4.5e-05  Score=57.03  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -.++++|++|+|||||+|.|.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            36899999999999999999764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.44  E-value=8e-05  Score=52.09  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.++|+|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.40  E-value=0.00011  Score=51.44  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=22.7

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCC
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      |+-...-.++|+|++||||||+++.|....
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            444455679999999999999999987643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.36  E-value=0.00013  Score=51.08  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...-.++|+|++||||||+++.|..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999988864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.36  E-value=0.00014  Score=50.28  Aligned_cols=28  Identities=18%  Similarity=0.146  Sum_probs=24.3

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |+......|++.|.+||||||+.+.|..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            6677777899999999999999988864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.34  E-value=0.00032  Score=52.41  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 029215            8 KCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~   27 (197)
                      .++++|++|+|||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.34  E-value=0.00012  Score=51.10  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.32  E-value=0.00011  Score=50.16  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=17.7

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 029215            8 KCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~   27 (197)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.31  E-value=0.00018  Score=50.26  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .--++|+|++|+|||||++.|...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            346889999999999999998853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.30  E-value=0.00014  Score=51.69  Aligned_cols=22  Identities=9%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|+|++|||||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.29  E-value=0.00015  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|+|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988763

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.28  E-value=0.00019  Score=49.48  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+..+...|+++|++||||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34455678999999999999999887653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.27  E-value=0.00016  Score=51.34  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999988763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.26  E-value=0.00018  Score=49.84  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.25  E-value=0.0002  Score=49.49  Aligned_cols=24  Identities=13%  Similarity=0.027  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.++++|++|||||||++.+.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.23  E-value=0.00023  Score=50.11  Aligned_cols=24  Identities=13%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....++|+|++|||||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.23  E-value=0.00019  Score=50.52  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      --|+|+|++|||||||++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.20  E-value=0.0002  Score=50.37  Aligned_cols=28  Identities=25%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |+..+...|+|.|.+||||||+.+.|..
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4444567899999999999999988864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.17  E-value=0.00037  Score=47.42  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      --.++++|++||||||+.+.|..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.16  E-value=0.00025  Score=49.71  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.16  E-value=0.00023  Score=51.17  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.14  E-value=0.00028  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999887654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.13  E-value=0.00027  Score=47.85  Aligned_cols=20  Identities=15%  Similarity=0.041  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCcHHHHHHHH
Q 029215            7 IKCVTVGDGAVGKTCMLISY   26 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l   26 (197)
                      .-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.12  E-value=0.00037  Score=47.52  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.11  E-value=0.00031  Score=47.69  Aligned_cols=22  Identities=18%  Similarity=0.153  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.10  E-value=0.0003  Score=48.54  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++++|++|+|||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.08  E-value=0.00035  Score=50.46  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~   27 (197)
                      .-.|+|+|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.08  E-value=0.00035  Score=47.27  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.07  E-value=0.00034  Score=50.43  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.06  E-value=0.00029  Score=50.28  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.05  E-value=0.00037  Score=53.17  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++++|++|+|||||++.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.04  E-value=0.00036  Score=49.39  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988663

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.04  E-value=0.00037  Score=48.40  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            478999999999999988765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.04  E-value=0.00036  Score=51.39  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.03  E-value=0.00037  Score=50.95  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.02  E-value=0.00042  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.01  E-value=0.00041  Score=48.89  Aligned_cols=21  Identities=19%  Similarity=0.120  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988853

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.00  E-value=0.00039  Score=50.65  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.00  E-value=0.00044  Score=48.78  Aligned_cols=21  Identities=19%  Similarity=0.066  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.99  E-value=0.00047  Score=49.80  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.99  E-value=0.00057  Score=47.65  Aligned_cols=25  Identities=12%  Similarity=0.302  Sum_probs=21.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .....|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.98  E-value=0.00049  Score=48.75  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+++|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            447899999999999999988754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.00053  Score=47.81  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999988864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.98  E-value=0.00041  Score=50.82  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.98  E-value=0.00062  Score=49.14  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=21.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....+|+|.|++||||||+.++|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999988864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.98  E-value=0.00049  Score=47.10  Aligned_cols=23  Identities=17%  Similarity=0.062  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999998763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.98  E-value=0.00047  Score=49.94  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988664

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.98  E-value=0.00042  Score=47.44  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.++++|++|+|||||++.+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.97  E-value=0.00044  Score=50.57  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999988653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.97  E-value=0.00048  Score=51.42  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      =.++|+|++|+|||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999988765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.97  E-value=0.00051  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.97  E-value=0.00047  Score=48.11  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.97  E-value=0.00045  Score=50.46  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|||||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999988765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.96  E-value=0.00041  Score=48.89  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.96  E-value=0.00067  Score=50.88  Aligned_cols=25  Identities=20%  Similarity=0.076  Sum_probs=21.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....-++|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3457899999999999999988765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.96  E-value=0.00057  Score=48.49  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.96  E-value=0.00047  Score=50.23  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.96  E-value=0.00046  Score=49.75  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988763

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.95  E-value=0.00048  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988664

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.94  E-value=0.00051  Score=46.78  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.94  E-value=0.00051  Score=49.84  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998774

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.93  E-value=0.00073  Score=50.84  Aligned_cols=25  Identities=20%  Similarity=0.030  Sum_probs=21.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..++-|+|+|++|||||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999987753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.93  E-value=0.00075  Score=47.05  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=21.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .....|+|.|.+||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999988864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.93  E-value=0.00055  Score=49.97  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999988763

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.92  E-value=0.00071  Score=46.42  Aligned_cols=23  Identities=13%  Similarity=0.073  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.92  E-value=0.00055  Score=50.19  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988774

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.92  E-value=0.00048  Score=48.06  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-.|+|+|++|+||||+.+.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.92  E-value=0.00058  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.92  E-value=0.00053  Score=47.87  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.91  E-value=0.00063  Score=49.30  Aligned_cols=26  Identities=15%  Similarity=0.109  Sum_probs=21.3

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....+.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999988754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.91  E-value=0.00071  Score=48.81  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+|+|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999988765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.90  E-value=0.00075  Score=50.00  Aligned_cols=24  Identities=17%  Similarity=0.091  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...-|++.|++||||||+...|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.90  E-value=0.0006  Score=50.11  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.90  E-value=0.00066  Score=47.78  Aligned_cols=21  Identities=19%  Similarity=0.140  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+++|+|||||+|...+|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.89  E-value=0.00055  Score=47.16  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.89  E-value=0.00073  Score=47.25  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.89  E-value=0.00072  Score=46.63  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.89  E-value=0.00065  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999988864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.88  E-value=0.00057  Score=49.68  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.88  E-value=0.0007  Score=47.07  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999988865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.87  E-value=0.00071  Score=46.25  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|++||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45699999999999999988864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.87  E-value=0.00059  Score=49.98  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.86  E-value=0.00072  Score=46.50  Aligned_cols=22  Identities=23%  Similarity=0.071  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.85  E-value=0.00072  Score=46.40  Aligned_cols=23  Identities=17%  Similarity=0.150  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999988854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.85  E-value=0.00059  Score=50.90  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++++|++|+|||||++.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.85  E-value=0.00043  Score=49.47  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=15.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHh
Q 029215            7 IKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~   27 (197)
                      --++|+|++|||||||++.|.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999998

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.84  E-value=0.00096  Score=49.48  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=20.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~   27 (197)
                      .....|+|+|++|||||||++.|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999997765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.84  E-value=0.00074  Score=49.36  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.83  E-value=0.00059  Score=48.39  Aligned_cols=23  Identities=17%  Similarity=0.110  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++|+|++|+|||||++.+....
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.81  E-value=0.00091  Score=46.79  Aligned_cols=23  Identities=13%  Similarity=0.005  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999988865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.81  E-value=0.00095  Score=46.46  Aligned_cols=24  Identities=21%  Similarity=0.056  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ...|++.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999988764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.00036  Score=47.60  Aligned_cols=21  Identities=24%  Similarity=0.321  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|||||||++.+.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.79  E-value=0.0007  Score=51.87  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-+++|+|++|+|||||++.|.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999988763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.79  E-value=0.00073  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.78  E-value=0.00072  Score=47.67  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.77  E-value=0.0011  Score=46.50  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ....|+|+|++||||||+++.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.75  E-value=0.0008  Score=47.89  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +...|+|.|++||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988863

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.75  E-value=0.00099  Score=46.66  Aligned_cols=24  Identities=17%  Similarity=-0.065  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999988864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.73  E-value=0.0012  Score=46.05  Aligned_cols=24  Identities=17%  Similarity=0.037  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+|+|++|||||||++.+..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.73  E-value=0.0012  Score=46.65  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.73  E-value=0.0012  Score=44.95  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+.++|++|||||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999988875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.73  E-value=0.0011  Score=45.26  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999987765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.72  E-value=0.00064  Score=50.80  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|+|||||++.+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            589999999999999988765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.72  E-value=0.00093  Score=49.13  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.71  E-value=0.00077  Score=47.79  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.71  E-value=0.00072  Score=44.98  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||+|++.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999988875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.70  E-value=0.00097  Score=46.06  Aligned_cols=24  Identities=17%  Similarity=0.074  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +...|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988853

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.69  E-value=0.0011  Score=47.13  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.68  E-value=0.001  Score=50.86  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|+|++|+|||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            4789999999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.68  E-value=0.0012  Score=44.44  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.68  E-value=0.00099  Score=50.88  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.68  E-value=0.0012  Score=45.95  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=22.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+...|+|.|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34678999999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.67  E-value=0.00089  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            3689999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.67  E-value=0.00097  Score=48.37  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+++|++||||||+.+.|..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.67  E-value=0.00097  Score=49.47  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.67  E-value=0.0011  Score=46.91  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |+|+|+|||||+|...+|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67799999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.66  E-value=0.0011  Score=47.92  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.66  E-value=0.0011  Score=50.59  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.65  E-value=0.0011  Score=46.90  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +-..|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.64  E-value=0.0011  Score=48.11  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.64  E-value=0.00083  Score=45.91  Aligned_cols=23  Identities=22%  Similarity=-0.012  Sum_probs=16.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.63  E-value=0.0012  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            4789999999999999988764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.63  E-value=0.0012  Score=50.82  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            3789999999999999988764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.0012  Score=50.50  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999988764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.61  E-value=0.0014  Score=48.97  Aligned_cols=24  Identities=21%  Similarity=0.068  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+|+|++|||||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.61  E-value=0.0012  Score=49.25  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~   27 (197)
                      .-.++++|++||||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            3578999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.60  E-value=0.00096  Score=46.21  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.60  E-value=0.0019  Score=44.32  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +...|+++|.+||||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999988754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.58  E-value=0.0013  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            3789999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.57  E-value=0.0014  Score=50.39  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4689999999999999988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.57  E-value=0.0016  Score=46.53  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.56  E-value=0.0014  Score=50.30  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      =.++|+|++|||||||++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999988875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.55  E-value=0.0015  Score=44.16  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.55  E-value=0.00051  Score=48.26  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999988864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.55  E-value=0.0016  Score=44.89  Aligned_cols=21  Identities=19%  Similarity=0.020  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.53  E-value=0.0016  Score=47.20  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHh
Q 029215            7 IKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~   27 (197)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998887

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.52  E-value=0.0017  Score=46.54  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+.|+|.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988863

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.52  E-value=0.0016  Score=44.65  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.51  E-value=0.0013  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.51  E-value=0.0016  Score=46.11  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.51  E-value=0.0019  Score=43.58  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.50  E-value=0.0013  Score=44.68  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.50  E-value=0.0013  Score=50.35  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -.++|+|++|+|||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999998763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.50  E-value=0.0016  Score=47.77  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+...
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999988763

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.50  E-value=0.002  Score=46.96  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999988864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.49  E-value=0.0011  Score=50.46  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4789999999999999988764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0026  Score=47.43  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .--++++|++||||||++..+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999987763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.48  E-value=0.0016  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.++++|++|+|||||++.+.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999988865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.48  E-value=0.002  Score=47.54  Aligned_cols=24  Identities=13%  Similarity=0.084  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.46  E-value=0.0017  Score=50.72  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|||||||++.+.+-
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.44  E-value=0.0021  Score=45.72  Aligned_cols=23  Identities=13%  Similarity=0.094  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|+..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.42  E-value=0.0018  Score=44.30  Aligned_cols=21  Identities=19%  Similarity=0.088  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999988754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.41  E-value=0.002  Score=43.90  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999988865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.39  E-value=0.0017  Score=50.20  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            478999999999999998875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.39  E-value=0.0022  Score=45.76  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ..-|+|.|+.||||||+++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            467999999999999999988764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.38  E-value=0.0021  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34699999999999999988865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.38  E-value=0.0012  Score=48.92  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=18.1

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |+.+ .+-|+|.|++||||||+.+.|..
T Consensus         1 Ms~~-~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence            5443 45699999999999999987754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.35  E-value=0.0026  Score=44.23  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.35  E-value=0.0097  Score=45.56  Aligned_cols=19  Identities=21%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999998876

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.35  E-value=0.0011  Score=50.60  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.34  E-value=0.0035  Score=44.78  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...-|++.|++||||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999988865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.34  E-value=0.0019  Score=51.75  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -.++|+|++|||||||++.+.+-
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.34  E-value=0.003  Score=43.86  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|++.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            468899999999999999988865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.33  E-value=0.0024  Score=44.84  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.32  E-value=0.002  Score=45.10  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+++.|+||+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999877754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0018  Score=51.14  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999988753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.29  E-value=0.0026  Score=45.39  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.28  E-value=0.0038  Score=47.69  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .--++++|++||||||++..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999987763

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.28  E-value=0.0029  Score=41.99  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.8

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999998865

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.28  E-value=0.0022  Score=47.56  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999887653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.28  E-value=0.0027  Score=44.60  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|.+|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.27  E-value=0.0028  Score=41.73  Aligned_cols=24  Identities=13%  Similarity=-0.063  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ...|++.|++|+|||++.+.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.25  E-value=0.0025  Score=48.46  Aligned_cols=24  Identities=17%  Similarity=0.185  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      =+++++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999988753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.24  E-value=0.0038  Score=49.62  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .--++|+|++|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999987763

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.24  E-value=0.0065  Score=47.69  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~   27 (197)
                      +..=|.|+|+.++|||+|+|.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            45567799999999999999654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.23  E-value=0.0025  Score=46.18  Aligned_cols=22  Identities=23%  Similarity=0.043  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.21  E-value=0.0034  Score=46.50  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.16  E-value=0.0033  Score=44.51  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.16  E-value=0.0034  Score=43.87  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+++.|++|+|||+++..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999988765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.14  E-value=0.0039  Score=44.49  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=20.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...++.++|+|||||||+..+|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            468999999999999999988754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.14  E-value=0.0034  Score=46.08  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999988653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.14  E-value=0.0022  Score=48.17  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      --++|+|+.|+|||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.13  E-value=0.0037  Score=46.22  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.12  E-value=0.0032  Score=46.67  Aligned_cols=23  Identities=13%  Similarity=-0.096  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.-+++.|+||+|||+|++.+..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45678889999999999988765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.11  E-value=0.0034  Score=48.30  Aligned_cols=22  Identities=18%  Similarity=0.079  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.09  E-value=0.0039  Score=45.05  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.08  E-value=0.0038  Score=50.35  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.07  E-value=0.0047  Score=46.39  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.05  E-value=0.0045  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~   27 (197)
                      ....+++.|++|+|||++++.+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999997554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.05  E-value=0.0038  Score=49.53  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999988864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.00  E-value=0.0039  Score=46.38  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -.+++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.99  E-value=0.0063  Score=44.42  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=21.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...-.+++.|++|+|||+|+..+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999988865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.99  E-value=0.0039  Score=50.27  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.98  E-value=0.004  Score=48.90  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999887753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.97  E-value=0.005  Score=46.59  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5689999999999999988865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.96  E-value=0.0043  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999988765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.94  E-value=0.0062  Score=42.35  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.93  E-value=0.0062  Score=47.50  Aligned_cols=24  Identities=21%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...-|+++|.+||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.92  E-value=0.0041  Score=45.66  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.0047  Score=50.55  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.90  E-value=0.0042  Score=50.60  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999988653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.89  E-value=0.0059  Score=43.65  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ....|+|+|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.87  E-value=0.0049  Score=50.22  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988763

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.87  E-value=0.0048  Score=42.32  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.84  E-value=0.0057  Score=42.61  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ..|+|+|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.82  E-value=0.005  Score=44.02  Aligned_cols=21  Identities=19%  Similarity=0.207  Sum_probs=17.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++|+|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999876653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.82  E-value=0.0054  Score=45.42  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.81  E-value=0.0061  Score=46.62  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.80  E-value=0.0089  Score=45.47  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~   27 (197)
                      ...+|+++|++|+||||+...+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999996554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.77  E-value=0.0051  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.069  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.77  E-value=0.006  Score=49.95  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999988764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.76  E-value=0.0086  Score=44.44  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999988765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.76  E-value=0.0048  Score=46.73  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999988765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.75  E-value=0.0064  Score=49.04  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.75  E-value=0.0057  Score=49.35  Aligned_cols=22  Identities=18%  Similarity=0.213  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.74  E-value=0.0029  Score=41.60  Aligned_cols=22  Identities=5%  Similarity=0.021  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|++.|++|+|||++.+.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999987754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.73  E-value=0.0059  Score=45.91  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            57999999999999999988753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.71  E-value=0.005  Score=50.33  Aligned_cols=21  Identities=29%  Similarity=0.321  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999988865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.70  E-value=0.0069  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.68  E-value=0.0066  Score=45.90  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ++++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999887653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.67  E-value=0.0069  Score=45.45  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999988865

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.64  E-value=0.0059  Score=45.37  Aligned_cols=84  Identities=15%  Similarity=0.034  Sum_probs=45.4

Q ss_pred             EEEEEEEcCCcccccc--c--ccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           54 VNLGLWDTAGQEDYNR--L--RPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~--~--~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                      +.+.|+||+|......  +  ....+.  ..+.+++|+|++..  ...+ ..+...+...  + ..-+|.||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~-~~~~~~~~~l--~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDM-KHIVKRFSSV--P-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHH-HHHTTTTSSS--C-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHH-HHHHHHHhcC--C-CCEEEEeCCCcccc--
Confidence            5677999999764321  1  011122  36788899987643  1222 2332222211  2 23466799997532  


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                                  ...+...+...+. |+..+
T Consensus       255 ------------~g~~~~~~~~~~~-pi~~i  272 (296)
T 2px0_A          255 ------------LGSVFNILAESKI-GVGFM  272 (296)
T ss_dssp             ------------CHHHHHHHHTCSC-CCSEE
T ss_pred             ------------hhHHHHHHHHHCc-CEEEE
Confidence                        2255566677776 55444

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.63  E-value=0.011  Score=44.15  Aligned_cols=85  Identities=14%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             EEEEEEEcCCcccccc-c----------ccCCC-CCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215           54 VNLGLWDTAGQEDYNR-L----------RPLSY-RGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL  120 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~-~----------~~~~~-~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (197)
                      +.+.++|+||...... +          ....+ ..++.+++|+|++... ..... .    .+.+. .+ ..-+|+||.
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a-~----~~~~~-~~-i~gvVlTk~  259 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA-K----IFKEA-VN-VTGIILTKL  259 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH-H----HHHHH-SC-CCEEEEECG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH-H----HHHhc-CC-CCEEEEeCC
Confidence            4577999999532211 0          11112 3478899999987442 22222 2    22222 12 234667999


Q ss_pred             CccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215          121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      |....              ...+..+....+. |+..++.
T Consensus       260 D~~~~--------------gG~~l~~~~~~~~-Pi~~i~~  284 (306)
T 1vma_A          260 DGTAK--------------GGITLAIARELGI-PIKFIGV  284 (306)
T ss_dssp             GGCSC--------------TTHHHHHHHHHCC-CEEEEEC
T ss_pred             CCccc--------------hHHHHHHHHHHCC-CEEEEeC
Confidence            97532              2346778888887 6666544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.63  E-value=0.0062  Score=46.37  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -+.|+|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.62  E-value=0.0081  Score=42.00  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.5

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4788999999999997764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.62  E-value=0.0042  Score=50.56  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999976654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.0069  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +--+++.||||+|||+|++.+-.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999998865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.61  E-value=0.011  Score=42.09  Aligned_cols=26  Identities=15%  Similarity=-0.014  Sum_probs=20.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+..-|++.|.+|+||||+++.+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999977753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.0078  Score=49.23  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      ++|+|+.|+|||||++.+.+-
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhcC
Confidence            799999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.53  E-value=0.011  Score=44.05  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-|+|+|++|||||+|...+..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34578999999999999988864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.52  E-value=0.0083  Score=45.29  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+++.|++|+|||++++.+..
T Consensus        60 ~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.52  E-value=0.0064  Score=44.23  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +...|+|.|.+||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.51  E-value=0.008  Score=45.86  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999988765

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.51  E-value=0.0058  Score=49.83  Aligned_cols=21  Identities=14%  Similarity=0.290  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999987755

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.51  E-value=0.0034  Score=45.65  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||+|++.+..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3488999999999999988865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.50  E-value=0.0076  Score=47.76  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-+++++|++|+|||++++.+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999977754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.49  E-value=0.0092  Score=44.57  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999977754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.0084  Score=46.99  Aligned_cols=24  Identities=17%  Similarity=0.117  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+-.|++.||||+|||+|++.+-.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999998865

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.46  E-value=0.009  Score=44.67  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -|+|+|++|||||||...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999988653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.46  E-value=0.0079  Score=45.78  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||+|++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.45  E-value=0.0086  Score=42.09  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.44  E-value=0.01  Score=50.98  Aligned_cols=24  Identities=13%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF   31 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~   31 (197)
                      .++|+|++|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999986544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.43  E-value=0.0088  Score=45.03  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.+++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999988653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.43  E-value=0.0095  Score=44.77  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999988754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.43  E-value=0.0094  Score=43.28  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ...+++.|++|+|||++++.+...
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHh
Confidence            356899999999999999988764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.42  E-value=0.011  Score=40.20  Aligned_cols=24  Identities=13%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .-+++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999888743

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.41  E-value=0.011  Score=42.34  Aligned_cols=23  Identities=26%  Similarity=0.208  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...|++.|..||||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999988865

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.013  Score=41.59  Aligned_cols=25  Identities=16%  Similarity=-0.071  Sum_probs=19.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      +.+=|+..|+++.|||+|++++++.
T Consensus        28 nkilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           28 NKILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             CceEEEecCcccccHHHHHHHHhcc
Confidence            3444455599999999999999886

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.011  Score=46.30  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+-.|++.||||+|||+|++.+-.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.39  E-value=0.0092  Score=45.48  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||+|++.+..
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999988865

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.37  E-value=0.011  Score=45.18  Aligned_cols=23  Identities=22%  Similarity=0.093  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.36  E-value=0.0098  Score=45.39  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.|++|+|||++++.+..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988865

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.34  E-value=0.025  Score=42.31  Aligned_cols=21  Identities=14%  Similarity=0.159  Sum_probs=16.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455666999999999988653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.01  Score=45.97  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +-.+++.||||+|||.|++.+-.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHH
Confidence            45699999999999999998865

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.32  E-value=0.01  Score=45.51  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...+++.|++|+|||++++.+..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.0092  Score=44.78  Aligned_cols=24  Identities=4%  Similarity=-0.147  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-.++|.|+||+|||++++.+..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999988764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.30  E-value=0.011  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.227  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.++++|++|+|||||++.+..
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-50
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-43
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-43
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-41
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-40
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-39
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-39
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-37
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-36
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-35
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-34
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-33
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-33
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-33
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-32
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-32
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-32
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	9e-30
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-28
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-28
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-28
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-27
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-27
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-27
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-26
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-25
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-25
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-25
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	8e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-23
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-22
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-21
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-21
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-21
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-21
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-20
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-18
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-18
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-17
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-17
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	5e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-17
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-15
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-15
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-15
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	9e-15
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-14
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-13
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-08
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-06

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (399), Expect = 6e-50
 Identities = 100/193 (51%), Positives = 137/193 (70%), Gaps = 7/193 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 127 QF--FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
                +      PIT    E+L + + +  Y+ECS+ TQ+ +K VFD AI   L+PP+ K
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183

Query: 185 KKKKKSHRACSIL 197
           K ++     C +L
Sbjct: 184 KSRR-----CVLL 191

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 1e-43
 Identities = 114/181 (62%), Positives = 137/181 (75%), Gaps = 2/181 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 RDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           RDDK     +      PIT  QG  + K IG+  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 P 181
           P
Sbjct: 182 P 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 7e-43
 Identities = 94/181 (51%), Positives = 133/181 (73%), Gaps = 2/181 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             +  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DT
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDT 64

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++D
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124

Query: 122 LRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           LRDD +    ++     PI   QG++L K IG+  Y+ECS+ TQ+ +K VFD AI  +L 
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

Query: 180 P 180
           P
Sbjct: 185 P 185

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  134 bits (339), Expect = 4e-41
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   IL + +  + ++ N+ + +     H      ++LVG K D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                        T  QGE L K +G P +IE S+K   NV  +F    K++ +
Sbjct: 123 VV-----------TADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 1e-40
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 2/175 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 127 QFFIDH--PGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
               +       P+   +G ++   IG+  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (328), Expect = 4e-39
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRG+   I+ + +  + S+  V        R+    V  +LVG K DL+D 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           +    D                       ++E S+    NV+  F    + + +   Q+ 
Sbjct: 127 RVVEYDVAKEFADANKM-----------PFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 186 KKKKSHR 192
             + + +
Sbjct: 176 LNETTQK 182

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (326), Expect = 4e-39
 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 127 QFFIDHP--GAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVVLQ 179
              ++       P++  QG  + K IG+  YIECS+   +N V+ +F  A    + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YR A+  IL + +  + S+  + +      ++ +  V  +LVG K+DL + 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF-DAAIKVVLQ 179
           ++             ++ +++        Y+E S+K   NV+ +F D A +++ +
Sbjct: 126 REVSQQR----AEEFSEAQDM-------YYLETSAKESDNVEKLFLDLACRLISE 169

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 2e-37
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   +L + + ++ S++N+         H +  V  +++G K D+ D 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           +Q              +GE+L    G   ++E S+K   NV+  F    + +    K K 
Sbjct: 127 RQVS----------KERGEKLALDYGIK-FMETSAKANINVENAFFTLARDI----KAKM 171

Query: 186 KK 187
            K
Sbjct: 172 DK 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 6e-36
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + VDG T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y R+    YRGA   +L + +    +YENV +       H    + I+LVG K DLR  +
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
               D          +     +      +IE S+    NV+  F   +  + +   QK+
Sbjct: 126 AVPTD----------EARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   ++ + +  +++Y +++           P   IIL+G K DL   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           +    +          + ++  +  G   ++E S+KT +NV+  F  A K
Sbjct: 125 RDVTYE----------EAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 5e-35
 Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 23/190 (12%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPII 114
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV         +       I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 115 LVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174
           L+G K DL D ++              Q  EL    G P Y E S+ T QNV+   +  +
Sbjct: 126 LIGNKADLPDQREVN----------ERQARELADKYGIP-YFETSAATGQNVEKAVETLL 174

Query: 175 KVVLQPPKQK 184
            ++++  +Q 
Sbjct: 175 DLIMKRMEQC 184

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (293), Expect = 3e-34
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y  +    YRGA  FIL + + ++ S+  V         +      ++LVG K D+ D++
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
               +             +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 127 VVSSERG----------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRGA   +L + +  + ++ ++        +H +  + I+L+G K DL   +
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
               +           GE   +  G   ++E S+KT  NV+  F    K + +  +Q
Sbjct: 125 DVKREE----------GEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+   F S  + V G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRGA   +L + + S+ +Y  +           +  + IIL G K DL  D+
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK 185
           +             AQ  EL        ++E S+ T +NV+  F    + +L   +  +
Sbjct: 127 EVTFLEASRF----AQENEL-------MFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 5e-33
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +R L  +    FIL +SL+++ S++++       +R      VP+ILVG K+DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           ++              +G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 124 REVSSS----------EGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV  +F +  + VDG  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YR A   +L + + +KAS++N+         +    V ++L+G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +    GE+L K  G P ++E S+KT  NV   F A  K + +
Sbjct: 128 R----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 1e-32
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  +F +  +  +  T+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  L P   R +   ++ + + +  S++   K            V I+LVG K DL D +
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           Q  I+            E   K +    +IE S+K   NVK +F     
Sbjct: 122 QVSIEEG----------ERKAKELNVM-FIETSAKAGYNVKQLFRRVAA 159

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 40/176 (22%), Positives = 82/176 (46%), Gaps = 12/176 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  L P  YRGA   IL + +  + ++  +         +      + ++      +++
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           ++          +   +G +  +      +IE S+KT   V+  F+  ++ ++Q P
Sbjct: 128 RE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 4e-31
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 18/182 (9%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F    + VDG  V + +WDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+   W  E  +YA        P +++G
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 122

Query: 118 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177
            K+D+ + +            +T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 123 NKIDISERQV-----------STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

Query: 178 LQ 179
           L 
Sbjct: 172 LA 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 9e-30
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
           QE++  +R    R    F+L F++  + S+  V K +   LR       P++LVG K DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
              +Q                           Y E S+K + NV   F+  ++ V +  +
Sbjct: 124 ESQRQVPRSEA----------SAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRKYQE 172

Query: 183 Q 183
           Q
Sbjct: 173 Q 173

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS I++         +  ++        VP +LVG K DL D 
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178
           +Q           +  + +          Y+E S+KT+ NV  VF   ++ + 
Sbjct: 125 RQV----------SVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIR 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 3e-28
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++  ++  +++       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                         + Q ++L +  G P YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TV-----------ESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 4e-28
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ L P+ YRGA   I+ + + ++ S+           R  +P + I L G K DL + +
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                          + +          ++E S+KT  NV  +F A  K + +
Sbjct: 128 AV----------DFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG      
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN----- 116

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
                  D      +   QG+ L +   + A++E S+K++ NV  +F   ++
Sbjct: 117 -----KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 15/179 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F    V         + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKL 120
           E +  L    YRGAD  +L + + + +S+EN+       L H         P +++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           D  + K+   +            +EL K +G       S+K   NV   F+   +  LQ
Sbjct: 123 DAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F    + + G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           ++ L P+ YR ++  IL + +  + S++ V        +     + + +VG K+DL  ++
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
              I             E   + +G+  +   S+K  + ++ +F    K +++
Sbjct: 125 HVSIQEA----------ESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 166

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (242), Expect = 1e-26
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S     + V VG G VGK+ + I +  + F TDY PT+ D+++   V+D     L + DT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           AGQE++  +R    R  + F+L FS+  + S+E + K     LR       P+IL+G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
           DL   +Q           T  +G++L + +    Y+E S+K + NV   F   ++V+ +
Sbjct: 121 DLDHQRQV----------TQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRK 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.1 bits (240), Expect = 3e-26
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGKT ++  Y +  F   Y  T+     +  V+VD   V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLD 121
            +  L    YRGAD  +L F + +  +++ +       L   +P      P +++G K+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           L + +                 +       +  Y E S+K   NV+  F    +  L+  
Sbjct: 123 LENRQVATKR-----------AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

Query: 182 KQKKKKKK 189
            + +   +
Sbjct: 172 TEVELYNE 179

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 2e-25
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 20/186 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKK--WIPELRHYAPGVPIILVGTKLDLRD 124
           +  ++ LS      FIL +S+ S+ S E +      I E++     +PI+LVG K D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184
            ++            +++ E L +      ++E S+K   NVK +F   + +        
Sbjct: 123 SREV----------QSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLE------- 164

Query: 185 KKKKKS 190
           K++  S
Sbjct: 165 KRRTVS 170

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 2e-25
 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG-LWDT 61
           A R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++   +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG E +  L P+ YRG+   I+ + +  + ++  +        +H  P + + + G K D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
           L D ++                ++    I +  ++E S+K   N+  +F    +
Sbjct: 121 LTDVREVMER----------DAKDYADSIHAI-FVETSAKNAININELFIEISR 163

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.6 bits (231), Expect = 6e-25
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F    V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  L P+ YR A   ++ + +    S+              +  + I LVG K+D    
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID---- 119

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
               +   G   +   +GE+L +  G   + E S+KT +NV  VF    +
Sbjct: 120 ---MLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.2 bits (230), Expect = 8e-25
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126
           + +R    R  D F++ +S+  KAS+E+V +     LR       P+ILV  K+DL   +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVVLQ 179
           +   D            +E+      P YIE S+K    NV   F   ++V+ Q
Sbjct: 126 KVTRDQG----------KEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 3e-23
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 15/176 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+           +   +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  LR   Y  A   I+ F  ++          W  +L      +PI+L G K+D++D K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
                          + + L+       Y + S+K+  N +  F    + ++  P 
Sbjct: 124 VKAKSI------VFHRKKNLQ-------YYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 4e-22
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
             + R    R  + F+L + +  + S+E V               V +ILVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVVLQ 179
           +Q           +T +GE+L   +    + ECS+ T + N+  +F    + V +
Sbjct: 122 RQV----------STEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRR 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.7 bits (208), Expect = 1e-21
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAG 63
           R  K + +GD  VGKTC+   + +  FP     T+  +     V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 64  QEDYNRL-RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLD 121
           QE + +      YR     +  + + + AS+ ++        +H  A  +P ILVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ---NVKAVF 170
           LR   Q   D            ++       P   E S+K      +V+A+F
Sbjct: 121 LRSAIQVPTD----------LAQKFADTHSMP-LFETSAKNPNDNDHVEAIF 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 56/174 (32%), Positives = 77/174 (44%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV         
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALV--------- 112

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
            Q  ID      I   + E L K +    +   S K   NV  VF    +  LQ
Sbjct: 113 -QNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 4e-21
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 11/165 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + VG  A GKT +L         T      F+  +    V+   ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
              L    ++     I       +       ++ +  L        ++       +  +K
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL------LVFANK 110

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
           Q   +   A  IT   G    +           + +   +    D
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLD 154

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 5e-21
 Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 17/182 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAP-GVPIILVGTKLDLR 123
                      AD  I  FSL  + S++ V++    +  LR     G+ + LVGT+  + 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
                         +  A+   L   +   +Y E  +    NV  VF    + V+   KQ
Sbjct: 120 ASSPRV--------VGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

Query: 184 KK 185
           ++
Sbjct: 172 QQ 173

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (200), Expect = 2e-20
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDL 122
           Q++Y+          + +IL +S+ S  S+E +       L       +PI+LVG K DL
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
             ++    +          +G+ L +   +  ++E S+K  Q    VF   I 
Sbjct: 122 HMERVISYE----------EGKALAESWNAA-FLESSAKENQTAVDVFRRIIL 163

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.5 bits (187), Expect = 3e-18
 Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 34/199 (17%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K + +G G  GK+ ++            +                 ++  ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQRS 54

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENV----------AKKWIPELRHYA-PGVPIIL 115
             +     + G    I   +L                    K +     +       IIL
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 116 VGT-------KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA--------YIECSS 160
                     K+        + ++ G+     A      +                   +
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 161 KTQQNVKAVFDAAIKVVLQ 179
              +NV+ VFDA   V+++
Sbjct: 175 TDTKNVQFVFDAVTDVIIK 193

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 8e-18
 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 11/168 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           ++ ++ + +G  A GKT +L         T      F+  +         V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 65

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           Q+    L    Y G    I       +   +   ++    +        IIL+       
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA----- 120

Query: 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
            +KQ   D      I    G    +           + +   +     
Sbjct: 121 -NKQDLPDAMKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLT 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 16/174 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K + VG    GKT +L  ++ N           +       +  +     +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQES 71

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
                   Y   +  I+      +       ++    L H       +++   K D+++ 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA---AIKV 176
                       I+        K         C + T + +    +     +K+
Sbjct: 132 MT-------VAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMMSRLKI 177

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 73.5 bits (179), Expect = 4e-17
 Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 13/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L    S           F+  S           L +WD  GQ  
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGGQRK 72

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
                   +   D+ I       +  +E   ++    L       VP+++   K DL   
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
                    A  I         +         CS+ T + V+   +   K
Sbjct: 133 AP-------ASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWVCK 174

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 4e-17
 Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE--LRHYAPGVPIILVGTKL 120
             +  N              L    I+  +    A +   +         +PIILVG   
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN-- 119

Query: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                     D      ++ ++G     +     +IE S+  Q NVK +F+  ++ V  
Sbjct: 120 --------KSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVRL 169

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.4 bits (179), Expect = 5e-17
 Identities = 29/199 (14%), Positives = 54/199 (27%), Gaps = 31/199 (15%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K + +G G  GK+  +            VPT           D  +V   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVA----------KKWIPELRHYA-PGVPIIL 115
             R     +      +   +L         +            +   + +       +IL
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 116 VGT-------KLDLRDDKQFFIDHPGAVPITTA-------QGEELRKLIGSPAYI-ECSS 160
                     K+       +F ++ G      A          +L        Y     +
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 161 KTQQNVKAVFDAAIKVVLQ 179
              +N++ VF A    +LQ
Sbjct: 178 TDTENIRFVFAAVKDTILQ 196

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 72.3 bits (176), Expect = 8e-17
 Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L         T   PT+  N      +    + L +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV---ETLSYKNLKLNVWDLGGQTS 73

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
                   Y      I       K      +K+    L+        +++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ--- 130

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
                    A  ++        K       +  S+   + +    D  I V+ +
Sbjct: 131 ----PGALSASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGLDWLIDVIKE 179

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 18/164 (10%), Positives = 41/164 (25%), Gaps = 4/164 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G    GKT +L    ++   T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
            RL    +   +  +          ++    +               ++        +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171
              +   A+ +    G +  +         CS   +      F 
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++   VG    GKT  +    S  F  D +PTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
           +  +     RG    +       +   E    +    L      G+P++++G K DL   
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL--- 116

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175
                       +         +          S K + N+       I+
Sbjct: 117 ----PGALDEKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITLQWLIQ 161

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 67.8 bits (164), Expect = 6e-15
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V +G    GKT +L     +            +      +  + +    +D  G   
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQ 69

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLDLRD- 124
             R+        +  +               ++            VPI+++G K+D  + 
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 125 -DKQFFIDHPGAVPITTAQGEELRKLIGSPA--YIECSSKTQQNVKAVFD 171
             ++   +  G    TT +G    K + +       CS   +Q     F 
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 9e-15
 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 17/182 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDK 126
             L        D +++ +S+  K S+E  ++  +   R      VPIILVG K DL   +
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKK 186
           +  +D          +G     +     +IE S+    NV+A+F+  ++ +    + ++ 
Sbjct: 122 EVSVD----------EGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQI----RLRRD 166

Query: 187 KK 188
            K
Sbjct: 167 SK 168

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 2e-14
 Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 19/185 (10%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           +R ++ + +G    GKT +L         T    T+         V    +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
                      Y   D  I       +        + +  L         +++   K D+
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
                       +  +  + G    K        + S+     +    +  ++ +     
Sbjct: 119 EQAMT-------SSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETL----- 165

Query: 183 QKKKK 187
            K ++
Sbjct: 166 -KSRQ 169

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 4e-14
 Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 15/171 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L  +      T   PT+  N               +WD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQKS 58

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
                   +   D  I       +   ++  ++    L      G  +++   K DL   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 126 KQFFIDHPGAVPITTAQGEELRKLIGSPA-YIECSSKTQQNVKAVFDAAIK 175
                           +  EL  +         CS+ T +++    D  + 
Sbjct: 119 LS---------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.0 bits (152), Expect = 4e-13
 Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 33/202 (16%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K + +G G  GK+  L             PT   +       +   V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----------PGVPI 113
               +     +      +   S           ++                      V I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 114 ILVGT-------KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA---------YIE 157
           IL          K+ +   K +F++  G         + L +               +  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 158 CSSKTQQNVKAVFDAAIKVVLQ 179
            ++   +N++ VF      +L 
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69
           + VG    GKT + +   +  +  D   ++ D+ +   V +    +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  LRPLSY-RGADVFILAFSLISKASYENVAKKWIPELRHYAPGV----PIILVGTKLDLRD 124
                +   A   +      +         +++ ++   +  +     +++   K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 125 DK 126
            K
Sbjct: 123 AK 124

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 18/130 (13%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + + +G G  GK+ ++            V T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKK----------WIPELRHYAP-GVPIILV 116
            R     +      I   +  S         +          +     +     + +IL 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 117 GTKLDLRDDK 126
             K DL  +K
Sbjct: 121 LNKQDLLAEK 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.77
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.59
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.29
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.15
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.0
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.99
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.91
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.57
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.52
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.29
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.23
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.22
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.16
d1okkd2	207	GTPase domain of the signal recognition particle r	98.13
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.01
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.99
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.78
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.69
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.66
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.63
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.57
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.48
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.47
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.45
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.41
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.36
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.35
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.35
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.31
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.31
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.27
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.24
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.22
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.2
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.19
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.19
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.18
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.18
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.17
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.17
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.17
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.17
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.14
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.13
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.12
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.12
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.11
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.1
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.1
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.08
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.07
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.06
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.05
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.05
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.04
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.04
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.03
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.94
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.93
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.93
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.92
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.92
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.91
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.89
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.88
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.87
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.86
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.86
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.81
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.79
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.78
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.78
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.75
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.68
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.65
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.56
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.53
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.51
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.45
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.45
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.39
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.38
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.31
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.31
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.3
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.26
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.25
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.24
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.12
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.07
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.02
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.97
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.96
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.94
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.86
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.84
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.76
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.67
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.67
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.56
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.51
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.48
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.45
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.45
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.42
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.42
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.42
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.4
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.39
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.34
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.24
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.23
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.1
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.03
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.94
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.9
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.78
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.77
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.77
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.76
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.57
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.54
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.53
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.37
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.36
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.35
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.34
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.29
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.22
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.2
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.19
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.98
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.97
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.6
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.32
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.31
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.15
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.93
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.39
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	92.26
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.86
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.69
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.36
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.14
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.95
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.74
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.66
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.65
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.31
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.15
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.03
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.03
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.6
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.81
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.47
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.47
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.47
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	86.46
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.42
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.36
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.79
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.7
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.39
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.02
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	84.94
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.91
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.23
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.69
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.55
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.32
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	82.35
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.98
d1ovma1	161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	80.53

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-41  Score=236.54  Aligned_cols=187  Identities=53%  Similarity=0.979  Sum_probs=162.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|++|||||||+++|..+.+.+.+.+|...........++..+.+++||++|+++|..++..+++++|++++||
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   82 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   82 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence            68999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++||+.+...|...+....++.|+++|+||+|+.+.....  ........+..++++++++.++..+|++|||++|
T Consensus        83 d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  162 (191)
T d2ngra_          83 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ  162 (191)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTC
T ss_pred             ccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            99999999999667788888777899999999999997653221  1223345588999999999987669999999999


Q ss_pred             CCHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215          164 QNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL  197 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      .||+++|+.+++.+.++++.     +++++|+||
T Consensus       163 ~~V~e~f~~l~~~~~~~~~~-----k~~~~C~i~  191 (191)
T d2ngra_         163 KGLKNVFDEAILAALEPPEP-----KKSRRCVLL  191 (191)
T ss_dssp             TTHHHHHHHHHHHHTSCCST-----TCCCSCCCC
T ss_pred             cCHHHHHHHHHHHHhcCcCC-----CCCCCCeEC
Confidence            99999999999998877643     345559987

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-39  Score=226.50  Aligned_cols=177  Identities=53%  Similarity=1.004  Sum_probs=156.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+|+|.+|||||||+++|..+.+.+.+.+|........+...+..+.+.+||++|++.+..++..+++++|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            46799999999999999999999999999999999887777778888889999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++++|+.....|...+....++.|+++|+||+|+.+.....  ......+.++.+++.++++.++..+|+||||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            9999999999988778888888888899999999999997654322  12223456889999999999997799999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.||+++|+.++++++.+
T Consensus       167 ~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             TCTTHHHHHHHHHHHHHCC
T ss_pred             CCcCHHHHHHHHHHHHcCC
Confidence            9999999999999988653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-39  Score=223.02  Aligned_cols=174  Identities=49%  Similarity=0.894  Sum_probs=153.5

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      ..||+|+|.+|||||||++++..+.+.+.+.+|...........++..+.+++||++|++.+..+++.+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999999999988777777888999999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++||+.....|...+....++.|+++|+||+|+.+.....  ........+..++++++++.++..+|++|||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999998677888888887899999999999997653321  1112234578899999999999879999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .||+++|+.+++.+++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-39  Score=220.04  Aligned_cols=163  Identities=30%  Similarity=0.449  Sum_probs=148.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.+||+|+|.+|||||||+++|..+.+.+.+.+|....+...+.+++..+.+++||++|.+.+..++..++.++|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            56789999999999999999999999998888999877777888899999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++++|..+ ..|+..+....  +++|+++|+||+|+...+.          ++.++++++++.+++ +|++|||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~Sak  149 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            9999999999998 77876665543  5899999999999977654          788999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029215          162 TQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (197)
                      +|.||+++|+.+++.+.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-39  Score=222.35  Aligned_cols=167  Identities=31%  Similarity=0.529  Sum_probs=150.0

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +..+.+||+|+|.+|||||||+++|..+.+.+.+.++..+.+...+.+++..+.+.+||++|++++...+..+++++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            35578999999999999999999999999999988888777788888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++|||++++.+|..+ ..|...+...  .++.|+++|+||+|+.+.+.          +..+++..+++.++. +|++||
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~S  149 (173)
T d2fn4a1          82 LLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEAS  149 (173)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECB
T ss_pred             eeecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc----------cchhhhhHHHHhcCC-EEEEEe
Confidence            999999999999998 7777666543  26899999999999976654          678899999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 029215          160 SKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~  180 (197)
                      |++|.||+++|+++++.+.+.
T Consensus       150 ak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         150 AKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999988543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-39  Score=220.31  Aligned_cols=162  Identities=23%  Similarity=0.384  Sum_probs=131.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++.+..+. .+.++....+...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            489999999999999999999887653 3455556667777888999999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++++..+ ..|+..+....  .++|+++|+||+|+.+.+.          +...+++++++.+++ +|++|||++|
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~~  147 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  147 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTS-EEEECBTTTT
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhcc----------hhHHHHHHHHHhcCC-EEEEEeCCCC
Confidence            99999999999 78888776654  5789999999999977654          788999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      .|++++|++|++.+..+
T Consensus       148 ~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         148 HNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999877543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-38  Score=221.50  Aligned_cols=179  Identities=64%  Similarity=1.071  Sum_probs=157.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +++.+||+|+|.+|||||||+++|+.+.|.+.+.+|..+.....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999999999999988877788888999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +|||++++++|+.+...|...+..+..++|+++|+||+|+.+.+...  ............++..+++.++..+|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            99999999999998666888888777899999999999987654321  1122334467789999999999779999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 029215          161 KTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++|.||+++|+++++.++.++
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999998775

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-38  Score=217.79  Aligned_cols=162  Identities=36%  Similarity=0.564  Sum_probs=148.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|||||||+++|..+.+...+.+|.. +.........+..+.+.+||++|++.+..+++.++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888888885 45566777889999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ||++++++++.+ ..|+..+....++.|+++|+||+|+.+.+.          +..++++++++.+++ +++++||++|.
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g~  149 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDL  149 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------eeehhhHHHHHHcCC-EEEEeccCCCc
Confidence            999999999998 889998888878999999999999977654          788899999999998 99999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029215          165 NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (197)
                      ||+++|++|++.+++
T Consensus       150 ~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         150 NVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             SSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.9e-38  Score=218.44  Aligned_cols=163  Identities=31%  Similarity=0.563  Sum_probs=145.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+|+|.++||||||++++..+.+.+.+.+|.+..+...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            46899999999999999999999999999999998887878888999999999999999999998888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..++++++++.+++ +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  150 (168)
T d1u8za_          83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             eeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            999999999998 78887776543  6899999999999976554          788999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.||+++|++|++.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-38  Score=215.32  Aligned_cols=163  Identities=29%  Similarity=0.604  Sum_probs=139.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+|+|.+|||||||++++..+.+.+.+.+|..... ......++..+.+++||++|++.+..+++.+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            578999999999999999999999999998888886444 4566778888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||+++++||+.+ ..|+..+.... +..|+++++||+|+...+.          ++.++++++++.+++ +|++|||++
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~e~~~~a~~~~~-~~~e~Sak~  149 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQ  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------cchHHHHHHHHHcCC-eEEEEecCC
Confidence            9999999999999 66766665444 5889999999999987655          889999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.||+++|.+|++.+++
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=219.29  Aligned_cols=164  Identities=27%  Similarity=0.504  Sum_probs=145.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||+++|+.+.+.+.+.+|.+..+......++..+.+.+||++|++.+...+..++.++|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            46899999999999999999999999998899998888777888899999999999999999999998899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           85 FSLISKASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      ||+++++++..+ ..|...+...   .++.|+++||||+|+.+.+.          +..++++++++.+++ ++++|||+
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------v~~~e~~~~~~~~~~-~~~e~Sak  148 (171)
T d2erxa1          81 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  148 (171)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             eecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCC
Confidence            999999999998 6666555432   25899999999999977654          788999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029215          162 TQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (197)
                      +|.||+++|+.|++.+.++
T Consensus       149 ~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         149 LNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             TTBSHHHHHHHHHHTCCSS
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            9999999999999866543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-37  Score=214.10  Aligned_cols=164  Identities=30%  Similarity=0.629  Sum_probs=145.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+++|.+|||||||+++|..+.+.+.+.++.. +.....+...+..+.+++|||||++++..+++.+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888888774 5556677778888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||+++++++... ..|...+.... +..|+++++||+|+.+...          +..++++++++.+++ ++++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (169)
T d3raba_          84 MYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAKD  151 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             EEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------cchhhhHHHHHHcCC-EEEEecCCC
Confidence            9999999999988 66665555544 6899999999999877654          788899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|+++++.+.++
T Consensus       152 g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         152 NINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TBSHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            999999999999988653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-38  Score=215.88  Aligned_cols=163  Identities=34%  Similarity=0.552  Sum_probs=147.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +++||+++|.++||||||++++..+.+.+.+.++..+.+...+..++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            57999999999999999999999999988888888777777788899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++++|..+ ..|...+.+..  .+.|+++++||+|+...+.          ++.++++++++.+++ +|+++||++
T Consensus        83 ~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~Sak~  150 (169)
T d1x1ra1          83 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAKD  150 (169)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred             cccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce----------eehhhHHHHHHHcCC-EEEEEcCCC
Confidence            999999999998 77877766553  5899999999999987655          888999999999998 999999998


Q ss_pred             CC-CHHHHHHHHHHHHcC
Q 029215          163 QQ-NVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~-~i~~~~~~i~~~~~~  179 (197)
                      +. ||+++|..+++.+.+
T Consensus       151 ~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         151 PPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            86 999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-37  Score=214.84  Aligned_cols=175  Identities=35%  Similarity=0.714  Sum_probs=153.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++..+.+.+.+.+|........+..++..+.+++||++|++.+...++.+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999988777777888899999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++||+.....|...+....++.|+++||||+|+.......  ......+.++.+++..++++.+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998677788887777899999999999987543211  1223345688999999999998879999999999


Q ss_pred             C-CHHHHHHHHHHHHcCC
Q 029215          164 Q-NVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~-~i~~~~~~i~~~~~~~  180 (197)
                      . |++++|+.+++.++++
T Consensus       162 ~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            7 5999999999988754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=213.89  Aligned_cols=164  Identities=29%  Similarity=0.535  Sum_probs=146.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+...++.+++++|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            46899999999999999999999999999999998888888888889999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||++++++|+.+ ..|...+.+. . ++.|+++|+||+|+.....          +..+++..+++.++..+|++|||++
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sak~  150 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cchhHHHHHHHHhCCCEEEEEcCCC
Confidence            999999999999 7776666543 2 6899999999999987654          7788899999887555999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.||+++|+++++.+.+
T Consensus       151 g~gv~e~F~~l~~~i~k  167 (167)
T d1c1ya_         151 KINVNEIFYDLVRQINR  167 (167)
T ss_dssp             TBSHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHhcC
Confidence            99999999999988753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=214.09  Aligned_cols=163  Identities=31%  Similarity=0.598  Sum_probs=144.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||+++|..+.+.+.+.++. .+.....+.+++..+.+.+|||||++.+..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            46899999999999999999999999988777777 45556678889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.++... ..|...+.... ...|+++|+||+|+.....          +..++++.+++.+++ ++++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~~~SAkt  151 (171)
T d2ew1a1          84 TYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKE  151 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             eeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------hhhhHHHHHHHhCCC-EEEEEccCC
Confidence            9999999999999 66666665544 6899999999999876554          788899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.||+++|.++++.+..
T Consensus       152 g~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         152 SDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-38  Score=215.50  Aligned_cols=163  Identities=32%  Similarity=0.605  Sum_probs=143.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +..+||+|+|.+|||||||++++..+.+.+.+.+|..+.....+.+++..+.+++||++|++.+...+..++..+|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            44589999999999999999999999999999999888888888899999999999999999999988888999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||.++++++..+ ..|...+... . ...|+++|+||+|+...+.          +..+++.++++.+++ +|++|||+
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  150 (171)
T d2erya1          83 VFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAK  150 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             eeccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc----------chHHHHHHHHHHcCC-EEEEEcCC
Confidence            9999999999998 7776655443 2 5899999999999977655          788999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029215          162 TQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (197)
                      +|.||+++|.+|++.+.
T Consensus       151 ~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         151 IRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999999874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-36  Score=209.31  Aligned_cols=162  Identities=25%  Similarity=0.547  Sum_probs=144.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+|+|.++||||||+++|..+.+.+.+.+|..... ......++....+.+||++|++.+..++..++.+++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            579999999999999999999999999998888885444 4566678888899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++++|..+ ..|...+.... ++.|+++|+||+|+.+.+.          +..++++++++.+++ +|++|||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~  150 (167)
T d1z0ja1          83 VYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKN  150 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             EeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------hhHHHHHHHHHHcCC-EEEEEecCC
Confidence            9999999999999 67766666555 6899999999999976655          788999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029215          163 QQNVKAVFDAAIKVVL  178 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (197)
                      |.||+++|.+|++.+.
T Consensus       151 ~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         151 AININELFIEISRRIP  166 (167)
T ss_dssp             TBSHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999999873

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=213.21  Aligned_cols=162  Identities=30%  Similarity=0.578  Sum_probs=146.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||+++|..+.+.+.+.++.++.+......++..+.+++||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            56999999999999999999999999999999998888888888899999999999999999999888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      ||+++++++..+ ..|...+....  ++.|+++||||+|+...+.          +..++++.+++.++. ++++|||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  149 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc----------chHHHHHHHHHHcCC-eEEEECCCC
Confidence            999999999999 77766665543  6899999999999977654          778899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029215          163 QQNVKAVFDAAIKVVL  178 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (197)
                      |.||+++|+++++.+-
T Consensus       150 g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHc
Confidence            9999999999998763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-37  Score=210.89  Aligned_cols=162  Identities=30%  Similarity=0.574  Sum_probs=143.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+|+|.+|||||||++++..+.+...+.++.. .........++..+.+++||++|++.+..++..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999999999888777664 4445677789999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||+++.+++... ..|...+.... +..|+++++||+|+.....          +..+++.++++.+++ ++++|||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sakt  150 (166)
T d1z0fa1          83 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKT  150 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------cHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 66766666555 6899999999999976654          678899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029215          163 QQNVKAVFDAAIKVVL  178 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (197)
                      |.||+++|++|++.+.
T Consensus       151 g~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         151 GENVEDAFLEAAKKIY  166 (166)
T ss_dssp             CTTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=213.84  Aligned_cols=161  Identities=29%  Similarity=0.485  Sum_probs=140.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|++|||||||++++..+.|.+.+.+|.+..+......++..+.+++||++|++.+. ....++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            489999999999999999999999999999999887777778889999999999999998775 3445778899999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhh--hCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRH--YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |+++++++..+ ..|......  ..++.|+++|+||+|+.+.+.          ++.++++++++.+++ +|++|||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~Saktg  148 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTG  148 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc----------CcHHHHHHHHHHhCC-eEEEEccccC
Confidence            99999999998 665444333  236899999999999976554          889999999999998 9999999999


Q ss_pred             CC-HHHHHHHHHHHHcC
Q 029215          164 QN-VKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~-i~~~~~~i~~~~~~  179 (197)
                      .| |+++|.+|++.+.+
T Consensus       149 ~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         149 EGNITEIFYELCREVRR  165 (168)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            85 99999999998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-36  Score=212.68  Aligned_cols=168  Identities=29%  Similarity=0.578  Sum_probs=147.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+|+|+++||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..++++++++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3569999999999999999999999999888888886554 457778999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhh-hCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           83 LAFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      +|||+++++++... ..|...+.. ...+.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        84 ~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk  151 (194)
T d2bcgy1          84 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSAL  151 (194)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------hhHHHHhhhhhccCc-ceEEEecC
Confidence            99999999999998 555555544 447899999999999987655          788899999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchh
Q 029215          162 TQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                      +|.||+++|+++++.+.+....
T Consensus       152 ~g~gi~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCH
T ss_pred             cCccHHHHHHHHHHHHHHHhhh
Confidence            9999999999999988754433

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=208.68  Aligned_cols=160  Identities=32%  Similarity=0.560  Sum_probs=141.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+|+|.+|||||||+++|..+.+...+.++.. .........++..+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999888888874 444556667788899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++.++++.+++ +|++|||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk~g~  148 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGY  148 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------hhHHHHHHHHHHcCC-EEEEecCCCCc
Confidence            99999999998 66665555444 7899999999999976554          678899999999998 99999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029215          165 NVKAVFDAAIKVVL  178 (197)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (197)
                      ||+++|++|++.+.
T Consensus       149 ~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         149 NVKQLFRRVAAALP  162 (164)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=209.28  Aligned_cols=161  Identities=34%  Similarity=0.596  Sum_probs=146.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|+++||||||+++|+.+.+.+.+.++.+..+...+...+..+.+.+||++|++.+...+..++..++++++||
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~   82 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceee
Confidence            48999999999999999999999999998899988888888888999999999999999999988888899999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      |++++.+++.+ ..|+..+....  +++|+++|+||+|+....           +..++++++++.+++ ++++|||++|
T Consensus        83 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~e~Sak~g  149 (166)
T d1ctqa_          83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VESRQAQDLARSYGI-PYIETSAKTR  149 (166)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTTC
T ss_pred             cccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc-----------ccHHHHHHHHHHhCC-eEEEEcCCCC
Confidence            99999999998 88988877654  579999999999986543           678899999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .||+++|.++++.+.+
T Consensus       150 ~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         150 QGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=209.91  Aligned_cols=165  Identities=28%  Similarity=0.547  Sum_probs=140.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +-+||+|+|++|||||||++++..+.+.+.+.++.. ..........+..+.+.+||++|++.+..+++.++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999999998887777663 4445556678888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++++|..+ ..|...+.... ++.|+++|+||+|+...+.          ...+++..+++..++ +|+++||++
T Consensus        82 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------~~~~~~~~~a~~~~~-~~~e~Sa~t  149 (173)
T d2a5ja1          82 VYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKT  149 (173)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred             EEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------hHHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 66666665554 6899999999999876654          678899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCc
Q 029215          163 QQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~  181 (197)
                      |.||+++|.++++.+.++.
T Consensus       150 g~~V~e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         150 ACNVEEAFINTAKEIYRKI  168 (173)
T ss_dssp             CTTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999987543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=207.01  Aligned_cols=162  Identities=31%  Similarity=0.563  Sum_probs=143.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|||||||+++|..+.+.+.+.++....+ .......+..+.+.+||++|++.+..++..+++++++++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999888888875444 45666788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||+++.+++... ..|...+... .++.|+++|+||+|+...+.          ++.++++.+++.+++ +|+++||++|
T Consensus        86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~SAk~g  153 (170)
T d1r2qa_          86 YDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTS  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------ccHHHHHHHHHhcCC-EEEEeeCCCC
Confidence            999999999999 5565555444 47999999999999977655          888999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029215          164 QNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (197)
                      .||+++|++|++.+.+
T Consensus       154 ~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         154 MNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999987764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=209.44  Aligned_cols=164  Identities=29%  Similarity=0.511  Sum_probs=144.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||+++|..+.+.+.+.++.... ....+..++..+.+++||+||++++..++..++..++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            45899999999999999999999999988888877544 44566678888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||.++++++..+ ..|...+.... ++.|+++|+||+|+.....          .....+.++++.+++ +++++||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  151 (174)
T d2bmea1          84 VYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSALT  151 (174)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------hhhhHHHHHHHhCCC-EEEEeeCCC
Confidence            9999999999998 66666665554 6899999999999876554          777888999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |.|++++|+++.+.+.++
T Consensus       152 ~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         152 GENVEEAFVQCARKILNK  169 (174)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999998744

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=215.17  Aligned_cols=163  Identities=29%  Similarity=0.487  Sum_probs=137.4

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|||||||+++|..+.+.+.+.+|.+ +.....+..++..+.+.+||++|++.+..+++.++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999888888875 44455666788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      ||++++++|+.+ ..|+..+....++.|+++|+||+|+.....            .+++..+++..++ +|+++||++|.
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~------------~~~~~~~~~~~~~-~~~e~Sak~~~  148 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKSNY  148 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC------------TTTSHHHHSSCSS-EEEEEBTTTTB
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh------------hhHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999998 778877777777999999999999976532            2344567777887 99999999999


Q ss_pred             CHHHHHHHHHHHHcCCch
Q 029215          165 NVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~  182 (197)
                      ||+++|++|++.+...++
T Consensus       149 ~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         149 NFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             TTTHHHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHHHHHccCCC
Confidence            999999999998876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-36  Score=210.27  Aligned_cols=164  Identities=29%  Similarity=0.597  Sum_probs=115.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +-+||+++|.++||||||+++|..+.+.+.+.++.. ......+..++..+.+++||+||++.+..+++.+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            468999999999999999999999988887777774 4455677888999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||++++.++..+ ..|...+.... ++.|+++|+||.|+.....          ...+++..++...++ ++++|||++
T Consensus        85 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  152 (173)
T d2fu5c1          85 VYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAKA  152 (173)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC--
T ss_pred             EEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------cHHHHHHHHHHhcCC-EEEEEeCCC
Confidence            9999999999998 66666665444 7899999999999987654          677788999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029215          163 QQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (197)
                      |+||+++|++|++.+..+
T Consensus       153 g~gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         153 NINVENAFFTLARDIKAK  170 (173)
T ss_dssp             -CCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=203.62  Aligned_cols=164  Identities=32%  Similarity=0.514  Sum_probs=132.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc-e-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-V-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+||+++|+++||||||++++..+.+...+.++ . .+.....+...+..+.+++|||+|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            3589999999999999999999999876554443 3 3445556778999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      +|||.++++++......|........+..|+++|+||+|+.....          +..+++.++++.+++ +++++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  153 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSAKT  153 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc----------ccHHHHHHHHHHcCC-EEEEEeCCC
Confidence            999999999999984444444444446899999999999987655          788999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.||+++|++|++.+.+
T Consensus       154 g~gi~e~f~~l~~~i~k  170 (170)
T d2g6ba1         154 GLNVDLAFTAIAKELKR  170 (170)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHcCC
Confidence            99999999999988753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-36  Score=207.25  Aligned_cols=163  Identities=33%  Similarity=0.590  Sum_probs=140.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +-+||+|+|.+|||||||++++..+.+...+.++. .......+..++..+.+.+||++|++.|...+..++++++++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            45899999999999999999999999887777666 34456667788999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (197)
                      |||.++++++... ..|+..+..+. +++|+++|+||+|+.+...          ...+.+..+....+. +++++||++
T Consensus        83 v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (175)
T d2f9la1          83 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSALD  150 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeeccccccc----------chHHHHHHhhcccCc-eEEEEecCC
Confidence            9999999999999 77777777766 6899999999999976544          566677788888886 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029215          163 QQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (197)
                      |.|++++|+++++.+.+
T Consensus       151 g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         151 STNVEEAFKNILTEIYR  167 (175)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-35  Score=203.38  Aligned_cols=164  Identities=32%  Similarity=0.575  Sum_probs=143.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ++||+++|.+|||||||+++|..+.+.+.+.+|.+.. ....+..++..+.+.+||++|++.+..+++.++.++|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            6899999999999999999999999999888888644 456777889999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||++++.++..+ ..|...+.... ...|+++++||+|+.+..       ..+.+..++++++++.+++ +|+++||++|
T Consensus        83 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~-------~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g  153 (170)
T d1ek0a_          83 YDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKTG  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTTC
T ss_pred             EeCCcccchhhh-hhhhhhhccccccccceeeeeccccccccc-------chhhhhHHHHHHHHHHcCC-EEEEecCCCC
Confidence            999999999998 66665554444 689999999999986542       2345788999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029215          164 QNVKAVFDAAIKVVL  178 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~  178 (197)
                      .||+++|.+|++.+.
T Consensus       154 ~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         154 ENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TTHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHHHhc
Confidence            999999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=205.55  Aligned_cols=167  Identities=29%  Similarity=0.556  Sum_probs=128.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEE--ECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+||+++|.+|||||||+++|..+.+.+.+.++..........  .+.....+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            36899999999999999999999999988887777544433322  2345577899999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++++.+|..+ ..|+..+....     +++|+++|+||+|+.+.+.         .+..++++++++.++..++++
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~e  150 (175)
T d1ky3a_          81 LVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFL  150 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEE
T ss_pred             EEeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhc---------chhHHHHHHHHHHcCCCeEEE
Confidence            99999999999988 78877765432     4789999999999976432         257788999999998769999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      |||++|.||+++|++|++.+++++
T Consensus       151 ~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         151 TSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhcc
Confidence            999999999999999999886543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-35  Score=202.32  Aligned_cols=165  Identities=29%  Similarity=0.602  Sum_probs=146.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.++||||||+++|..+.+...+.++.... ....+..++..+.+.+|||||++++..++..++.++|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988877777444 44567788999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (197)
                      |||++++.++... ..|+..+....  ...|+++++||.|.....           +...+++++++.++. +++++||+
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----------v~~~~~~~~~~~~~~-~~~e~Sa~  152 (177)
T d1x3sa1          86 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  152 (177)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc-----------ccHHHHHHHHHHCCC-EEEEEeCC
Confidence            9999999999998 77877776655  478999999999976533           788899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 029215          162 TQQNVKAVFDAAIKVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (197)
                      +|.|++++|+++++.+.+++.
T Consensus       153 tg~gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         153 TCDGVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHccCcc
Confidence            999999999999999988763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=210.45  Aligned_cols=164  Identities=37%  Similarity=0.622  Sum_probs=140.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC----------CeEEEEEEEEcCCcccccccccC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~~   73 (197)
                      ..+||+++|++|||||||+++|..+.+.+.+.++....+ ...+..+          ...+.+++|||+|++.|..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            458999999999999999999999998887777764433 2333322          23578999999999999999999


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG  151 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +++++|++++|||++++++++.+ ..|+..+....  +..|+++|+||+|+...+.          +..++++++++.++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~e~~~~~~~~~  152 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYG  152 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc----------chHHHHHHHHHHcC
Confidence            99999999999999999999998 78877666554  5789999999999977654          88899999999999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      + +++++||++|.||+++|+++++.+.++
T Consensus       153 ~-~~~e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         153 I-PYFETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             C-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            8 999999999999999999999988644

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=200.13  Aligned_cols=164  Identities=35%  Similarity=0.644  Sum_probs=139.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+|+|.++||||||++++..+.+.+.+.+|.... ........+..+.+.+||++|+..+...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            456899999999999999999999999988888887544 4556667888899999999999999989999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++||.+++.++..+ ..|+..+....     ++.|+++|+||+|+.+. .          +..++++.+++..+..+|++
T Consensus        84 ~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-~----------v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          84 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISER-Q----------VSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-S----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhc-c----------CcHHHHHHHHHHcCCCeEEE
Confidence            99999999999988 77877665432     47899999999999653 2          78889999999887569999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      |||++|.||+++|+++++.++.
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-35  Score=200.91  Aligned_cols=162  Identities=32%  Similarity=0.646  Sum_probs=136.9

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      -+||+++|.++||||||+++|+.+.+.+.+.+|....+ ...+..++..+.+++|||||++.+..+++.++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999888888885444 56777889899999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      ||.+++++++.+ ..|...+.... ...|++++++|.|+....           ...+++..++..++. ++++|||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKND  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhh-----------hhHHHHHHHHHhcCC-eEEEECCCCC
Confidence            999999999998 66655555544 688999999999987654           578899999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      .|++++|++|++.+.++
T Consensus       149 ~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             BSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999987543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=201.43  Aligned_cols=163  Identities=23%  Similarity=0.434  Sum_probs=134.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCce-eeceeEEEEECCeEEEEEEEEcCC---cccccccccCCCCCCc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSANVVVDGSTVNLGLWDTAG---QEDYNRLRPLSYRGAD   79 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G---~~~~~~~~~~~~~~~~   79 (197)
                      ..+||+++|.+|||||||+++|..+.+.. ...+++ .+.+...+.+++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            36999999999999999999999876532 223333 455667788899999999999764   5554  4567889999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           80 VFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++++|||+++++++..+ ..|...+....  ++.|+++|+||+|+.+.+.          +..++++++++.+++ +|++
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEE
Confidence            99999999999999998 77776665543  6899999999999977654          788999999999998 9999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +||++|.||+++|++|++.+..++
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHcc
Confidence            999999999999999999875443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.9e-34  Score=199.50  Aligned_cols=167  Identities=29%  Similarity=0.551  Sum_probs=142.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      -+||+|+|.+|||||||+++|+++.+.+.+.+|.. +.........+..+.+.+||++|+..+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            38999999999999999999999999988888874 44555677788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      +|.++..++..+ ..|+..+....     .++|+++|+||+|+.+..           +..++...++...+..++++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEECB
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEEEc
Confidence            999999999998 78876665432     378999999999986543           5677777887766555999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCchhh
Q 029215          160 SKTQQNVKAVFDAAIKVVLQPPKQK  184 (197)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~~~~  184 (197)
                      |++|.||+++|+++++.+.+++.+.
T Consensus       150 ak~~~gI~e~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNALKQETEV  174 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhccccc
Confidence            9999999999999999887765444

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=195.58  Aligned_cols=164  Identities=23%  Similarity=0.319  Sum_probs=136.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.++||||||++++..+.+.. +.++....+...+.+++..+.+.+||++|+..+.     +++++|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            46999999999999999999999998854 4566666677778889999999999999987653     56789999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      ||+++++||+.+ ..|...+....    ++.|+++|+||.|+....        .+.+..++++.+++.....+|++|||
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS--------CCCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhh--------hcchhHHHHHHHHHHhCCCeEEEeCC
Confidence            999999999998 77877765443    478999999999985432        23477888999977665459999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchh
Q 029215          161 KTQQNVKAVFDAAIKVVLQPPKQ  183 (197)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~  183 (197)
                      ++|.|++++|..+++.+...+.+
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhhhh
Confidence            99999999999999988766543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-34  Score=194.90  Aligned_cols=158  Identities=30%  Similarity=0.579  Sum_probs=136.8

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccc-cccCCCCCCcEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~i   82 (197)
                      +.+||+++|.+|||||||++++..+.+...+.++..... ............+.+||++|...+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999888888875554 45677888889999999999876654 4567889999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (197)
                      +|||++++++|..+ ..|+..+.++.  ++.|+++||||+|+.+...          ++.++++++++.+++ +|++|||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc----------hhHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999998 77877776654  5899999999999987654          889999999999998 9999999


Q ss_pred             CC---CCCHHHHHHHHH
Q 029215          161 KT---QQNVKAVFDAAI  174 (197)
Q Consensus       161 ~~---~~~i~~~~~~i~  174 (197)
                      ++   ++||+++|++|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   569999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=190.66  Aligned_cols=161  Identities=20%  Similarity=0.270  Sum_probs=124.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|+++||||||+++|..+.+.+.+.+|.+..+. .+..++  +.+++||+||++.+...+..++..++++++||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhccc
Confidence            589999999999999999999999998888887754432 344455  78889999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (197)
                      |+++++++......|...+.... +++|+++|+||+|+.+...       ...+........++..+. +++++||++|.
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~e~Sa~~g~  150 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-------EKELIEKMNLSAIQDREI-CCYSISCKEKD  150 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-------HHHHHHHTTGGGCCSSCE-EEEECCTTTCT
T ss_pred             ccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh-------HHHHHHHHHHHHHHhCCC-EEEEEeCcCCc
Confidence            99999999998454455555443 6899999999999865421       000111111111222344 78999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029215          165 NVKAVFDAAIKVV  177 (197)
Q Consensus       165 ~i~~~~~~i~~~~  177 (197)
                      |++++|+||++.+
T Consensus       151 gv~e~~~~l~~~~  163 (164)
T d1zd9a1         151 NIDITLQWLIQHS  163 (164)
T ss_dssp             THHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHcc
Confidence            9999999998853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=2.2e-31  Score=182.29  Aligned_cols=159  Identities=17%  Similarity=0.237  Sum_probs=122.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|++|||||||+++|.++.+ ....+|.+.. ...+...+  +.+.+||+||++.++..+..++..+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeee-eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            468999999999999999999988765 3445554322 22344455  7788999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEEe
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIEC  158 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  158 (197)
                      ||+++..++......|...+.... .+.|+++|+||+|+.+...            .++......     ..++ ++++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  143 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS------------CNAIQEALELDSIRSHHW-RIQGC  143 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEEEC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC------------HHHHHHHHHhhhhhcCCC-EEEEE
Confidence            999999999988666666655443 6899999999999976432            222222211     1123 68999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 029215          159 SSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ||++|.|++++|+||++.+..+
T Consensus       144 Sa~~g~gv~e~~~~l~~~i~~r  165 (165)
T d1ksha_         144 SAVTGEDLLPGIDWLLDDISSR  165 (165)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999987653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.6e-32  Score=189.80  Aligned_cols=161  Identities=16%  Similarity=0.208  Sum_probs=117.6

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ...+.+||+++|.+|||||||++++..+.+.. ..+|.... .......+  +.+.+||++|++.++..+..++..++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceE-EEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            45678999999999999999999998776532 22332221 22333444  7788999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-----HHHHhCCCeE
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-----LRKLIGSPAY  155 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  155 (197)
                      ++|||+++..++......|...+.... .+.|+++|+||+|+....            ...++.+     .+...++ ++
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~  155 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDRSW-SI  155 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSSCE-EE
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc------------CHHHHHHHHHHHHHhhCCC-EE
Confidence            999999999999988444445454443 589999999999996542            2222222     1222333 78


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029215          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ++|||++|+||+++|++|++.+.+
T Consensus       156 ~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         156 VASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998743

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=6.4e-32  Score=186.39  Aligned_cols=158  Identities=17%  Similarity=0.208  Sum_probs=118.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.+||+++|.++||||||++++..+.+... .+|.... ........  +.+.+||+||++.++..+..+++.+++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE-EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee-EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            35679999999999999999999988765332 1222111 12223333  78889999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-----HHHHhCCCeEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-----LRKLIGSPAYI  156 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  156 (197)
                      +|+|+++.+++......|...+.... .+.|+++++||+|+.+...            ..++..     .+...++ .++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~  151 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK------------PHEIQEKLGLTRIRDRNW-YVQ  151 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc------------HHHHHHHHHHHHHHhCCC-EEE
Confidence            99999999999998555555555443 5899999999999976422            222222     1222243 688


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      +|||++|+||+++|++|.+.+
T Consensus       152 e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         152 PSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC
T ss_pred             EeeCCCCcCHHHHHHHHHHhc
Confidence            999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=4.7e-32  Score=187.53  Aligned_cols=159  Identities=19%  Similarity=0.255  Sum_probs=118.3

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +..+.+||+++|++|||||||+++|.++.+.... ++.+. ....+...+  +.+.+||++|++.++..+..++..+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~-~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee-eEEEeccCC--eeEeEeeccccccchhHHHHHhhcccee
Confidence            3456799999999999999999999988764322 11111 122333444  7888999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-----HHHHhCCCeE
Q 029215           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-----LRKLIGSPAY  155 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  155 (197)
                      ++|||+++..++......|........ .++|+++|+||+|+.....            .....+     .++..+. ++
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~  154 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QI  154 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EE
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc------------HHHHHHHHHHHHHHhcCC-EE
Confidence            999999999999998444444443333 5899999999999976432            222221     1122233 78


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ++|||++|+|++++|+||++.+
T Consensus       155 ~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         155 QSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEeCCCCCCHHHHHHHHHhcC
Confidence            9999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=4.8e-30  Score=174.36  Aligned_cols=159  Identities=16%  Similarity=0.199  Sum_probs=119.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|||||||+++|.++.+...+..+..    .....+...+.+.+||++|...+...+..++..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            5899999999999999999998887554443322    122334455788899999999998888889999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215           87 LISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (197)
                      ++++.++......+.+.+.... ...|+++++||+|+.....       ..++.......+++..+. +++++||++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SAktg~g  148 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGDG  148 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTBT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-------HHHHHHHHHHHHHhhCCC-EEEEeECCCCCC
Confidence            9999999988454445554443 5789999999999876432       001111222233334454 899999999999


Q ss_pred             HHHHHHHHHHHH
Q 029215          166 VKAVFDAAIKVV  177 (197)
Q Consensus       166 i~~~~~~i~~~~  177 (197)
                      ++++|++|.+.+
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=5e-27  Score=162.32  Aligned_cols=159  Identities=16%  Similarity=0.122  Sum_probs=117.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~   73 (197)
                      ++.-.|+|+|.+|||||||+++|++...  .....+++...........+  ..+.+|||||........        ..
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            3445799999999999999999998753  23444444444445555666  466799999986543322        23


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP  153 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +++++|++++|+|++++....+  ..|...++....+.|+++|+||+|+....             .+....+.+..+..
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~  145 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP-------------EEAMKAYHELLPEA  145 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH-------------HHHHHHHHHTSTTS
T ss_pred             ccccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccCH-------------HHHHHHHHhhcccC
Confidence            4678999999999988755443  45667777666789999999999996532             23345555666666


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      .++++||++|.|+++++++|++.+.+
T Consensus       146 ~~~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         146 EPRMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             ceEEEecCCCCCHHHHHHHHHHhCCC
Confidence            88999999999999999999988754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=156.84  Aligned_cols=164  Identities=13%  Similarity=0.176  Sum_probs=121.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+.... ++... ........+  +.+.+||.+|.+.+...+...+..+++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce-eeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            4589999999999999999999998875432 22221 222333445  6777999999999999888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (197)
                      +|+.+..++......+...+.... ...|+++++||.|+.....       ...+....+..++...+. +++++||++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SA~~g  151 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSATKG  151 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTTTC
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-------HHHHHHHHHHHHHhcCCC-EEEEEeCCCC
Confidence            999998888877555555554433 6899999999999976532       000111122223333444 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029215          164 QNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (197)
                      .||+++|++|++.+.++
T Consensus       152 ~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         152 TGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             TTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999987544

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=5.4e-27  Score=161.83  Aligned_cols=159  Identities=16%  Similarity=0.216  Sum_probs=114.1

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.+||+|+|.+|||||||++++..+.+..... +. ..........+  +.+.+||++|++.....+..++..+++++
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~-~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TI-GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CS-CSSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-cc-ceeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            3567999999999999999999999987643221 11 12223334444  67789999999999998988999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEE
Q 029215           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYI  156 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (197)
                      +++|.++..++......+........ .+.|+++|+||+|+.....            ..+.....     ...+ .+++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------~~~i~~~~~~~~~~~~~-~~~~  154 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT------------VAEISQFLKLTSIKDHQ-WHIQ  154 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTGGGCCSSC-EEEE
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc------------HHHHHHHHHHHhhHhcC-CEEE
Confidence            99999999998877343433333332 6899999999999876432            22222222     1123 3799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHc
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      ++||++|+|++++|++|.+.+.
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhC
Confidence            9999999999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.3e-25  Score=157.00  Aligned_cols=167  Identities=18%  Similarity=0.175  Sum_probs=116.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|..|||||||+++|..+.++..+..      ...+....  +.+++||++|++.++..|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~------~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV------ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE------EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE------EEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            468999999999999999999988766433221      22333444  7888999999999999999999999999999


Q ss_pred             EeCCCHhHH----------HHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccc-----cCCCCCccccHHHHH----
Q 029215           85 FSLISKASY----------ENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF-----IDHPGAVPITTAQGE----  144 (197)
Q Consensus        85 ~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~----  144 (197)
                      +|+++.+++          .+....|...+.... ...|+++++||+|+.......     ............++.    
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999987755          233356666666554 689999999999975432211     000111111222221    


Q ss_pred             -HHHHHh-----CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          145 -ELRKLI-----GSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       145 -~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                       .+....     +...+++|||+++.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence             121111     11246689999999999999999887764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.5e-26  Score=156.18  Aligned_cols=150  Identities=20%  Similarity=0.270  Sum_probs=111.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~   76 (197)
                      +||+++|.+|||||||+++|++....  ....+++.......+...+  ..+.+||+||.......        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999976542  3334444455555666677  45669999997554322        223457


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++++|..+..++... ..|...+.....+.|+++|+||+|+.....          ..        .+.+..+++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~----------~~--------~~~~~~~~~  140 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETL----------GM--------SEVNGHALI  140 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCC----------EE--------EEETTEEEE
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHH----------HH--------HHhCCCcEE
Confidence            89999999999988777666 566666666556899999999999876432          00        112334899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029215          157 ECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      ++||++|.|+++++++|++.+
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999998864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2e-25  Score=156.60  Aligned_cols=171  Identities=18%  Similarity=0.133  Sum_probs=123.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|..|||||||+++|..+.+.  +.||.+..+. .  +....+.+++||++|++.++..|..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY-P--FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE-E--EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE-E--EeccceeeeeccccccccccccccccccccceeeEe
Confidence            4689999999999999999999988763  5577654322 2  333347788999999999999999999999999999


Q ss_pred             EeCCCHh----------HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccc------cCCCCCccccHHHHHHHH
Q 029215           85 FSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF------IDHPGAVPITTAQGEELR  147 (197)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~  147 (197)
                      ||.++..          .+.+....|...+.... .+.|+++++||+|+.......      .........+......+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998753          23444488888887765 699999999999986443211      011111222333333332


Q ss_pred             HHh---------CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          148 KLI---------GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       148 ~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ...         ....+++|||++|.||+++|+.+.+.+.+.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            211         111367899999999999999998887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.7e-24  Score=145.38  Aligned_cols=151  Identities=15%  Similarity=0.192  Sum_probs=110.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|++|||||||+++|.++.+.. ..++..... ..  .........+||++|...+...++.++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS-EE--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE-EE--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE-EE--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            79999999999999999999987743 344432222 12  222235677999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH------------HHhCCCe
Q 029215           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR------------KLIGSPA  154 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  154 (197)
                      ++..++......+........ .+.|+++++||.|+....            ...+..+..            ...++ +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~-~  144 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------------SEAELRSALGLLNTTGSQRIEGQRPV-E  144 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------------CHHHHHHHHTCSSCCC---CCSSCCE-E
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC------------CHHHHHHHhhhhhhhHHHhhcccCCC-E
Confidence            999998887444444333333 589999999999996542            222222111            11122 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 029215          155 YIECSSKTQQNVKAVFDAAIK  175 (197)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~  175 (197)
                      +++|||++|+|++++|+||.+
T Consensus       145 ~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         145 VFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHhC
Confidence            899999999999999999865

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=2.5e-24  Score=149.13  Aligned_cols=157  Identities=17%  Similarity=0.222  Sum_probs=110.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++..||+++|.+|||||||+++|.++.+.... ++.... ...+...+  ..+.+||+.++..+...+...+...+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            56799999999999999999999988765432 222222 22344555  456799999999998888899999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-------------
Q 029215           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------------  149 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  149 (197)
                      ++|+++...+......+........ .+.|+++++||.|+....            ...+..+....             
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~  154 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI------------SEERLREMFGLYGQTTGKGSVSLK  154 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC------------CHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC------------CHHHHHHHHhhcccchhhhhhhHH
Confidence            9999999888877555554444333 689999999999986542            22222222211             


Q ss_pred             ----hCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          150 ----IGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       150 ----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                          .+. ++++|||++|+|++++|+||++.+
T Consensus       155 ~~~~~~~-~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         155 ELNARPL-EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TCCSCCE-EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HhhcCCC-EEEEEeCCCCCCHHHHHHHHHHhh
Confidence                122 688999999999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.8e-25  Score=153.72  Aligned_cols=159  Identities=18%  Similarity=0.130  Sum_probs=102.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCCCCc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~~~   79 (197)
                      .|+++|.++||||||+|+|++.... ....+++ ...............+++|||||........       ...+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT-LSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCS-SCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCc-eeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999875432 2222221 1222222233333567799999964322211       12356789


Q ss_pred             EEEEEEeCCCHh--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215           80 VFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE  157 (197)
Q Consensus        80 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++++++|+....  ..... ..++........+.|+++|+||+|+.....            .++..+.....+. ++++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~------------~~~~~~~~~~~~~-~~~~  147 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEA------------VKALADALAREGL-AVLP  147 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHH------------HHHHHHHHHTTTS-CEEE
T ss_pred             hhhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHHH------------HHHHHHHHHhcCC-eEEE
Confidence            999999986642  22222 333333322223689999999999965432            2333444444565 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCc
Q 029215          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      +||++|.|++++++.|.+.+...+
T Consensus       148 iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         148 VSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EEcCCCCCHHHHHHHHHHHHhhcC
Confidence            999999999999999999886554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.7e-24  Score=151.94  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=110.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +-+||+++|.+|||||||+++|.   +.+.+.||.+.. ...+...+  +.+++||++|++.++..|..+++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~-~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIH-EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEE-EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeE-EEEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            35899999999999999999993   445566776532 22344555  7788999999999999999999999999999


Q ss_pred             EeCCCHh----------HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCccccc------CCCCCccccHHHHHHHH
Q 029215           85 FSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI------DHPGAVPITTAQGEELR  147 (197)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~------~~~~~~~~~~~~~~~~~  147 (197)
                      ||.++..          .+......|...+.... .++|+++++||+|+.+......      ..........+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998853          33444345555555443 6999999999999864322110      01111112333444333


Q ss_pred             HHh----------CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          148 KLI----------GSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       148 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ...          ....+++|||+++.+|+++|+.+.+.+.+.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            321          011345799999999999999998877543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.1e-24  Score=147.20  Aligned_cols=155  Identities=21%  Similarity=0.188  Sum_probs=102.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---------cccCCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR   76 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~~~   76 (197)
                      +|+++|.+|||||||+++|++...  .....+++.......+....  ..+.+||++|......         .....+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            689999999999999999987543  23344444444444455555  5677999999543221         1223357


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|+++++.|.+.......  ..+...+...  ++|+++|+||+|+....            ..+...++. ..+..+++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~~~~~~~~~-~~~~~~~i  142 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------EREVKPELY-SLGFGEPI  142 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------HHHTHHHHG-GGSSCSCE
T ss_pred             cCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------hhHHHHHHH-hcCCCCeE
Confidence            8999999999877655443  4566666666  89999999999985421            122222222 23445789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          157 ECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      ++||++|.|+++++++|.+.+.++.
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999876543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.6e-23  Score=144.29  Aligned_cols=158  Identities=21%  Similarity=0.222  Sum_probs=105.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc----------
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------   71 (197)
                      +..+||+++|.+++|||||+++|++...  ......++.......+..++.  .+.++|+||.......+          
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            3469999999999999999999997653  344455555555556667774  55699999975433221          


Q ss_pred             --cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-
Q 029215           72 --PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-  148 (197)
Q Consensus        72 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (197)
                        ...++.+|++++|+|++.+.....  ..+...+...  +.|+++|+||+|+.....          ...++..+... 
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~~----------~~~~~~~~~~~~  149 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFRE  149 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcchh----------hhhhhHHHHHHH
Confidence              122457899999999987644333  3455555555  889999999999875543          22333332222 


Q ss_pred             ---HhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          149 ---LIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       149 ---~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                         ..+..+++++||++|.|+++++++|.+.+
T Consensus       150 ~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         150 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence               23455899999999999999999997765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=2.4e-24  Score=148.77  Aligned_cols=161  Identities=18%  Similarity=0.117  Sum_probs=107.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee--------eceeEEEEECCeEEEEEEEEcCCcccccccccCCCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~   76 (197)
                      +.++|+++|.+++|||||+|+|++.........+..        ......+...+  ..+.++|+||+..|.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            457999999999999999999986432211111111        11112233445  56679999999988877777888


Q ss_pred             CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh---CCC
Q 029215           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI---GSP  153 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  153 (197)
                      .+|++++++|++++...+..  .....+...  ++|+++|+||+|+......        .........+.+..   ...
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  149 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTHNLKNS  149 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSSSGGGC
T ss_pred             hccccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHHH--------HHHHHHHHHHHHHhhcCCCC
Confidence            99999999999987554433  333445555  8999999999999764320        00111222222221   223


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          154 AYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      +++++||++|+|++++++.|.+.+..
T Consensus       150 ~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         150 SIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            88999999999999999999987753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.2e-22  Score=137.59  Aligned_cols=148  Identities=19%  Similarity=0.237  Sum_probs=102.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--c-------ccCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--L-------RPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--~-------~~~~~   75 (197)
                      +||+++|.+++|||||+|+|++...  ......++.......+...+  ..+.+|||||......  .       ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999987543  33444444455556666777  5667999999532111  1       11124


Q ss_pred             CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|++++|+|++++......  .+...+    ...++++++||+|+.+..            ..++....  .....++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~--~~~~~~----~~~~~i~~~~k~d~~~~~------------~~~~~~~~--~~~~~~~  138 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNK--LGTDRHM  138 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHH--HTCSTTE
T ss_pred             HhCCEEEEEEeCCCCcchhhh--hhhhhc----ccccceeeeeeccccchh------------hhHHHHHH--hCCCCcE
Confidence            679999999999988665543  222222    267899999999997642            22222221  1223489


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 029215          156 IECSSKTQQNVKAVFDAAIKV  176 (197)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~  176 (197)
                      +++||++|.|+++++++|.+.
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999998763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=3.4e-23  Score=148.06  Aligned_cols=167  Identities=17%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEE----------------EEECCeEEEEEEEEcCCcccccccc
Q 029215            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SAN----------------VVVDGSTVNLGLWDTAGQEDYNRLR   71 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~----------------~~~~~~~~~l~i~D~~G~~~~~~~~   71 (197)
                      |+|+|.+++|||||+++|+.........+...... ...                ..+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999986422111111110000 000                0112223467799999999998888


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC-------CCccc---cHH
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP-------GAVPI---TTA  141 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-------~~~~~---~~~  141 (197)
                      ...+..+|++++|+|+.++-....  ...+..+...  ++|+++++||+|+...........       ....+   ...
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT--QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch--hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999987644443  3455556555  899999999999976543111000       00000   001


Q ss_pred             HHH----HHHHH-------------hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          142 QGE----ELRKL-------------IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       142 ~~~----~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ...    .+...             .+..+++++||++|.|++++++.+...+.+
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            111    11111             112378999999999999999999887644

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.9e-22  Score=143.52  Aligned_cols=169  Identities=15%  Similarity=0.155  Sum_probs=117.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+||+++|..|||||||++++..+.+.    ||.+. ....+...+  +.+++||++|++.++..|..+++++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG~-~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGI-FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCSC-EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCCe-EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            4689999999999999999999876543    44442 223455566  7788999999999999999999999999999


Q ss_pred             EeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccc-----------cCCC---------
Q 029215           85 FSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF-----------IDHP---------  133 (197)
Q Consensus        85 ~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~-----------~~~~---------  133 (197)
                      +|.++.          ....+....|...+.... .++|++|++||+|+.+.....           +...         
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            999864          334455466666666654 689999999999996543210           0000         


Q ss_pred             CCccccHHHHHH-----HHHHhC-------CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          134 GAVPITTAQGEE-----LRKLIG-------SPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       134 ~~~~~~~~~~~~-----~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      ........++..     +.+...       ..-.+++||.++.+|+.+|+.+.+.+++.
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence            001112223322     222111       11235799999999999999887777643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.7e-22  Score=139.42  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=84.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-ccccCCCCCCcEEEEEEe
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d   86 (197)
                      +|+++|+++||||||+++|..+.+...+ ++............+..+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998876543 33333322222224455778899999998775 456777889999999999


Q ss_pred             CCCHhHH-HHHHHHHHHHHhhh---CCCCCEEEEeecCCccCC
Q 029215           87 LISKASY-ENVAKKWIPELRHY---APGVPIILVGTKLDLRDD  125 (197)
Q Consensus        87 ~~~~~s~-~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~  125 (197)
                      +++..++ .+....+...+...   ...+|++||+||+|+...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998764 34323333443322   247899999999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=1e-21  Score=135.87  Aligned_cols=151  Identities=16%  Similarity=0.139  Sum_probs=97.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---------------cc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------------LR   71 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------------~~   71 (197)
                      .|+++|.+|||||||+|+|++.... ..+++++..  ...+...+    +.+|||||......               ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999976542 233333322  22233333    45899999532211               12


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHH---------HHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215           72 PLSYRGADVFILAFSLISKASYENVA---------KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ  142 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      ...++.+|++++|+|+..........         ..++..+...  +.|+++|+||+|+.....             ..
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-------------~~  140 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-------------EV  140 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-------------HH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-------------HH
Confidence            23356789999999997653322210         1233444444  899999999999865422             12


Q ss_pred             HHHHHHHhCC------CeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          143 GEELRKLIGS------PAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       143 ~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                      ...+....+.      ..++++||++|.|+++++++|.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2222222221      147899999999999999999988753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=5.8e-22  Score=138.49  Aligned_cols=166  Identities=18%  Similarity=0.121  Sum_probs=106.1

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCC---C-CC-ceeecee-EEEE-------------------ECCeEEEE
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---Y-VP-TVFDNFS-ANVV-------------------VDGSTVNL   56 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~-~~-t~~~~~~-~~~~-------------------~~~~~~~l   56 (197)
                      |++..++|+++|..++|||||+++|++......   . .+ |....+. ....                   .......+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            456789999999999999999999986321110   0 00 0000000 0000                   01123568


Q ss_pred             EEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCcccccCCCCC
Q 029215           57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~~~~~~  135 (197)
                      .++|+||+..|.......+..+|++++++|+.++...... .+.+..+...  +. +++++.||+|+.+...        
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~--~~~~iiv~inK~D~~d~~~--------  149 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII--GQKNIIIAQNKIELVDKEK--------  149 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH--TCCCEEEEEECGGGSCHHH--------
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh--cCccceeeeecccchhhHH--------
Confidence            8999999999988877788899999999999886322222 2233333333  44 4788899999976432        


Q ss_pred             ccccHHHHHHHHHHhC--CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          136 VPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                      .....+...++....+  ..+++++||++|+|++++++.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         150 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            0011223333333332  247899999999999999999987653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=5.4e-22  Score=137.49  Aligned_cols=158  Identities=17%  Similarity=0.173  Sum_probs=96.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEE-CCeEEEEEEEEcCCcccccc----cccC---CCCCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNR----LRPL---SYRGA   78 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~----~~~~---~~~~~   78 (197)
                      +|+++|.+|||||||+|+|++... ...+.+++.......... ++  ..+++|||||......    ....   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            589999999999999999987543 223334333222223333 34  3566999999632221    1111   23457


Q ss_pred             cEEEEEEeCCCHhHHH--HHHHHH---HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-C
Q 029215           79 DVFILAFSLISKASYE--NVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-S  152 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~--~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (197)
                      +.++++++........  .....+   .........++|+++|+||+|+.+..              +....+.+.++ .
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~  146 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  146 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhccC
Confidence            8888888765432211  110111   11111222478999999999996532              22334444432 2


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (197)
                      .+++.+||++|.|+++++++|.+.+...+
T Consensus       147 ~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         147 YPVFPISAVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhhhCC
Confidence            37899999999999999999999986544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.86  E-value=1.6e-21  Score=135.69  Aligned_cols=164  Identities=18%  Similarity=0.124  Sum_probs=107.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC-----CCCC-C-----CCCce----eeceeEEEEECCeEEEEEEEEcCCcccccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN-----TFPT-D-----YVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~-----~~~~-~-----~~~t~----~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~   69 (197)
                      ++++|+++|..++|||||+++|+..     .... .     ..+..    .+.......+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            5799999999999999999998741     0000 0     00000    001111222223335677999999999988


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ...+.+..+|++++|+|+.++..-+..  +.+..+... ...|++++.||+|+..+..       .......+++.+...
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~-------~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLTE  151 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHH-------HHHHHHHHHHHHHHH
Confidence            887888999999999999987554443  333333333 1357889999999975432       000122345555555


Q ss_pred             hCC----CeEEEeccCCC----------CCHHHHHHHHHHHHc
Q 029215          150 IGS----PAYIECSSKTQ----------QNVKAVFDAAIKVVL  178 (197)
Q Consensus       150 ~~~----~~~~~~Sa~~~----------~~i~~~~~~i~~~~~  178 (197)
                      ++.    .|++++||++|          .++.++++.+.+.+.
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            554    47999999998          589999998877654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=2e-21  Score=136.73  Aligned_cols=165  Identities=15%  Similarity=0.080  Sum_probs=103.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCCC---CCCC--ce-eeceeEEEEE------------------------CCeE
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVP--TV-FDNFSANVVV------------------------DGST   53 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~--t~-~~~~~~~~~~------------------------~~~~   53 (197)
                      +++++|+++|+.++|||||+++|++..-..   ....  +. .......+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            456999999999999999999998532100   0000  00 0000000000                        1123


Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  132 (197)
                      ..+.++|+||+..|.......+..+|++++|+|+.++- .-+.  ...+..+... .-.|++++.||+|+.+....    
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t--~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~----  158 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT--REHFVALGII-GVKNLIIVQNKVDVVSKEEA----  158 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH--HHHHHHHHHT-TCCCEEEEEECGGGSCHHHH----
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhH--HHHHHHHHHc-CCceeeeccccCCCccchHH----
Confidence            46789999999999887777788899999999998862 2222  2223333333 13488999999999764320    


Q ss_pred             CCCccccHHHHHHHHHHhC--CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215          133 PGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQ  179 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (197)
                          ....+....+.....  ..|++++||++|.|++++++.|.+.+..
T Consensus       159 ----~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         159 ----LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             ----HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ----HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence                011122223322221  2478999999999999999999887664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=1.5e-21  Score=136.33  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=94.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCccccc-------------ccc
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYN-------------RLR   71 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------------~~~   71 (197)
                      ..+|+|+|.+|||||||+|+|++........... .+..........   .+.+.|++|.....             ..+
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            3489999999999999999999754311111111 111111122222   23356776632211             112


Q ss_pred             cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-
Q 029215           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-  150 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (197)
                      ...+..++++++++|++.+..-.+  ..++..+...  ++|+++|+||+|+.+...           ..+....+.+.+ 
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~-----------~~~~~~~~~~~l~  164 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK-----------WDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG-----------HHHHHHHHHHHHT
T ss_pred             hccccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH-----------HHHHHHHHHHHhc
Confidence            233457899999999986643322  4556666666  899999999999865432           222333333332 


Q ss_pred             --CCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          151 --GSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       151 --~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                        ...+++++||++|.|+++++++|.+.+
T Consensus       165 ~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         165 IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence              344789999999999999999998876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-19  Score=124.80  Aligned_cols=160  Identities=18%  Similarity=0.104  Sum_probs=108.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc---------ccccc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~   72 (197)
                      .+.=.|+++|.+|||||||+|+|++....  .....+..............  .+..+|++|....         .....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccc
Confidence            34556899999999999999999976532  22223333344444445553  4457888884321         12233


Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .....+++++++.|..+.....   ..+...+...  ..|.++|+||.|......          ........+...++.
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~~---~~~~~~l~~~--~~~~i~v~~k~d~~~~~~----------~~~~~~~~~~~~~~~  145 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPDD---EMVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF  145 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHHH---HHHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred             cchhhcceeEEEEecCccchhH---HHHHHHhhhc--cCceeeeeeeeeccchhh----------hhhhHhhhhhhhcCC
Confidence            3456788888999987643322   2333334443  678999999999876543          334555666777787


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          153 PAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .+++++||++|.|++++++.|.+.+.+.
T Consensus       146 ~~~~~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         146 LDIVPISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             CCEEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence            7999999999999999999999887544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=6.4e-20  Score=128.56  Aligned_cols=146  Identities=19%  Similarity=0.170  Sum_probs=95.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhC--------CCCC----CCC------CceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSN--------TFPT----DYV------PTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~----~~~------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +++++|+++|+.++|||||+++|+..        ....    ++.      +.+.+.....+..++  ..++|+||||+.
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~   78 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   78 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCch
Confidence            35799999999999999999999631        0100    000      111122223444555  456699999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .|.......+..+|++|+|+|+.++...+..  ..+..+...  ++| +++++||+|+.+...       .......+++
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~~~-------~~~~~~~~i~  147 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVR  147 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCCHH-------HHHHHHHHHH
Confidence            9988888888999999999999988766654  334445555  776 677899999865321       0001223444


Q ss_pred             HHHHHhCC----CeEEEeccCC
Q 029215          145 ELRKLIGS----PAYIECSSKT  162 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~~  162 (197)
                      .+...++.    .++++.|+..
T Consensus       148 ~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         148 DLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHhcCCCcccceeeeeechh
Confidence            44444433    3678888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.77  E-value=8.7e-19  Score=123.98  Aligned_cols=153  Identities=17%  Similarity=0.146  Sum_probs=98.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh--CCCCCC----------CCCce----------------------eeceeEEEE
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD----------YVPTV----------------------FDNFSANVV   48 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~----------~~~t~----------------------~~~~~~~~~   48 (197)
                      ++..+||+++|..++|||||+++|+.  +.+...          ..++.                      ...-...+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            45679999999999999999999963  111100          00000                      000011222


Q ss_pred             ECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcc
Q 029215           49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQ  127 (197)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~  127 (197)
                      ..+  ..+.++|+||+..|.......+..+|++++|+|+.++..-+..  +.+..+...  ++| ++++.||+|+.+..+
T Consensus        86 ~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          86 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             ccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccc
Confidence            334  4677999999999988877788899999999999887555443  333344444  655 788899999976432


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHH
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK  167 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (197)
                            ........+...+....+.    .+++++||++|+|+.
T Consensus       160 ------~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 ------RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             ------HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ------eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                  0001122344555555543    257899999999873

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.73  E-value=9.2e-18  Score=120.49  Aligned_cols=160  Identities=17%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh--CCCCC------------------------------CCCCceeeceeEEEEEC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------------DYVPTVFDNFSANVVVD   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~   50 (197)
                      .+.+++|+++|+.++|||||+.+|+.  +.+..                              ...+.........+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            45678999999999999999999852  11100                              00000000001122223


Q ss_pred             CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHH------HHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 029215           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE------NVAKKWIPELRHYAPGVP-IILVGTKLDLR  123 (197)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~  123 (197)
                      +  ..+.+.|+||+..|..........+|++++|+|+.++..-.      +. .+.+..+...  ++| +++++||+|+.
T Consensus       101 ~--~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT-~e~l~l~~~~--~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         101 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEP  175 (245)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTST
T ss_pred             c--ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccch-HHHHHHHHHc--CCCeEEEEEEcCCCC
Confidence            3  56779999999999998888889999999999998753221      11 2223333333  554 77999999987


Q ss_pred             CCcccccCCCCCccccHHHHHHHHHHh-CC-----CeEEEeccCCCCCHHHHHH
Q 029215          124 DDKQFFIDHPGAVPITTAQGEELRKLI-GS-----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~~  171 (197)
                      .....    ........++...+.... +.     .+++++||++|+||.++++
T Consensus       176 ~~~~~----e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         176 SVQWS----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCSSC----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccchh----HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            43210    000000112223332332 21     3789999999999976543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.5e-18  Score=117.91  Aligned_cols=163  Identities=13%  Similarity=0.011  Sum_probs=87.6

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCC--CCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----------
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------   69 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------   69 (197)
                      +....++|+++|.+|+|||||+|+|++......  ..++............+. ..+..++.++......          
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK-RLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE-EEEECCCCC------CCHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceeccccc-ceeeeecccccchhhhhhhhhhhhhh
Confidence            456789999999999999999999987654222  222222222222222331 2212222222111111          


Q ss_pred             cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ........+..++.+.+.........  ..++..+...  ..++++++||+|+.....        .....+..++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~v~~k~D~~~~~~--------~~~~~~~~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHH--HHHHHHhhhc--cccccchhhhhhccCHHH--------HHHHHHHHHHHHHh
Confidence            01111234556666666665543333  3455555555  789999999999876432        00111222222222


Q ss_pred             -hCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          150 -IGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       150 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                       .+..+++++||++|.|++++++.|.+.+
T Consensus       159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence             2344789999999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=9.5e-17  Score=116.29  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=82.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC--CCCC-----------CCCC------ceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----------DYVP------TVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~-----------~~~~------t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (197)
                      +.-+|+++|+.++|||||+.+++..  ....           ++.+      .+.......+.+++  ..++|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            4447999999999999999998631  1110           0000      00111123455566  567799999999


Q ss_pred             cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      +|.......+..+|++|+|+|+.++-..+.. ..| .....+  ++|.++++||+|....
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w-~~a~~~--~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVW-RQAEKY--KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSTTC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHH-HHH-HHHHHc--CCCEEEEEeccccccc
Confidence            9999888888999999999999998666654 444 455555  8999999999998553

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=6e-18  Score=118.85  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=77.4

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCC----CCCCcE
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS----YRGADV   80 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~----~~~~~~   80 (197)
                      +..+|+++|++|||||||+|+|++..+.+.   ++.......+..++  ..+.+||+||++.+...+..+    ...++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            457899999999999999999998775422   22222222222333  566799999998766554433    345688


Q ss_pred             EEEEEeCCC-HhHHHHHH---HHHHHHHhhhC-CCCCEEEEeecCCccCC
Q 029215           81 FILAFSLIS-KASYENVA---KKWIPELRHYA-PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        81 ~i~v~d~~~-~~s~~~~~---~~~~~~~~~~~-~~~p~iiv~nK~D~~~~  125 (197)
                      +++++|+.+ ..++....   ..+...+.... .++|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            899998765 44444441   22233333333 58999999999999764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=8.4e-18  Score=120.16  Aligned_cols=154  Identities=14%  Similarity=0.079  Sum_probs=98.2

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh--CCCCC------------------------------CCCCceeeceeEEEEEC
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------------DYVPTVFDNFSANVVVD   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~   50 (197)
                      ++..++|+++|+.++|||||+.+|+.  +....                              ...+.+.+.-...+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            34569999999999999999999862  21110                              00011111112233444


Q ss_pred             CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH------HHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 029215           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVAKKWIPELRHYAPGVP-IILVGTKLDLR  123 (197)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~  123 (197)
                      +  +.++|.|+|||..|...+.+.+..+|++|+|+|+..+..-      .+. ..-+......  ++| +++++||+|+.
T Consensus        83 ~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT-~eh~~~~~~~--gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          83 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFTL--GVRQLIVAVNKMDSV  157 (239)
T ss_dssp             S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHHT--TCCEEEEEEECGGGG
T ss_pred             C--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhH-HHHHHHHHHc--CCCeEEEEEECCCCC
Confidence            4  6778999999999998888889999999999999876321      012 2222333333  666 67889999987


Q ss_pred             CCcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHH
Q 029215          124 DDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK  167 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (197)
                      +...      ........+...+....+.    .+++++|+..|+|+-
T Consensus       158 ~~d~------~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         158 KWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCCH------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            6432      0000122344555555553    367899999998863

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=1.5e-16  Score=114.96  Aligned_cols=110  Identities=23%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC-CCCC----CCCc--------------eeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT-FPTD----YVPT--------------VFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~-~~~~----~~~t--------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      +|+++|+.++|||||+.+++... ..+.    ..++              +...-...+..++  ..++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            69999999999999999986321 1110    0000              0111123455566  567799999999999


Q ss_pred             ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  123 (197)
                      ......++.+|++++|+|+.++-..... ..| ....+.  ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~-~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTE-RAW-TVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhH-HHH-Hhhhhc--cccccccccccccc
Confidence            8888888899999999999988666654 444 455555  89999999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=5.2e-17  Score=115.30  Aligned_cols=157  Identities=12%  Similarity=0.085  Sum_probs=94.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh--CCCCC------------------------------CCCCceeeceeEEEEECCe
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------------DYVPTVFDNFSANVVVDGS   52 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~~   52 (197)
                      ++++|+++|+.++|||||+.+|+.  +....                              ...+.+.......+..++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            579999999999999999998853  11100                              001111111112233334 


Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHH-----HHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                       +.++++||||+..|.......+..+|++++|+|+.++...+..     ..+-+...... ...++++++||+|+.....
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTT
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEcccCCCccc
Confidence             5678999999999999888889999999999999986432111     01111222222 1346888999999875321


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (197)
                      .    .........+...+...++.    .+++++||..|.|+.+
T Consensus       159 ~----~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 D----EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             C----HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             c----HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0    00001122334445454443    3578999999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.2e-15  Score=113.62  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=81.8

Q ss_pred             CCccee-EEEEECCCCCcHHHHHHHHhh--CCCCCC---------------CCC-ceeeceeEEEEE-------------
Q 029215            2 SASRFI-KCVTVGDGAVGKTCMLISYTS--NTFPTD---------------YVP-TVFDNFSANVVV-------------   49 (197)
Q Consensus         2 ~~~~~~-~i~v~G~~~~GKstli~~l~~--~~~~~~---------------~~~-t~~~~~~~~~~~-------------   49 (197)
                      .....+ +|+|+|+.++|||||+.+|+.  +.....               ... |.... ...+..             
T Consensus        12 ~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~-~~~l~~~~~~~~~~~~~~~   90 (341)
T d1n0ua2          12 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKST-AISLYSEMSDEDVKEIKQK   90 (341)
T ss_dssp             HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCC-EEEEEEECCHHHHHHCSSC
T ss_pred             cCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCC-EEEEEeccCcccccchhcc
Confidence            344456 599999999999999999872  111100               000 11000 111111             


Q ss_pred             -CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           50 -DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        50 -~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                       ++..+.++++||||+..|.......++.+|++++|+|+.++-..+.. ..|. .....  ++|+++++||+|...
T Consensus        91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~-~a~~~--~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLR-QALGE--RIKPVVVINKVDRAL  162 (341)
T ss_dssp             CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCEEEEEEECHHHHH
T ss_pred             ccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHH-HHHHc--CCCeEEEEECccccc
Confidence             33568899999999999998888888899999999999998776665 4443 34444  799999999999753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.4e-15  Score=114.22  Aligned_cols=168  Identities=14%  Similarity=0.126  Sum_probs=94.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCCCC------CCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-----cccC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~   73 (197)
                      .+++|+|+|.+|+|||||+|.|.+......      ..+|+...  ..+...+ .-.+.+|||||......     +...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccC-CCeEEEEeCCCcccccccHHHHHHHh
Confidence            469999999999999999999997443211      11122211  1222221 12356999999653321     1222


Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCC-CccccHHHH----HHHHH
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPG-AVPITTAQG----EELRK  148 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~~~~~----~~~~~  148 (197)
                      .+..+|+++++.|..-.  -.+  ..+...+...  ++|+++|.||+|............. ......++.    ....+
T Consensus       132 ~~~~~d~~l~~~~~~~~--~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFK--KND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             TGGGCSEEEEEESSCCC--HHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCC--HHH--HHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            35568888888764322  122  3555666666  8999999999997532110000000 000011111    11122


Q ss_pred             H--hCCCeEEEeccCC--CCCHHHHHHHHHHHHcCCc
Q 029215          149 L--IGSPAYIECSSKT--QQNVKAVFDAAIKVVLQPP  181 (197)
Q Consensus       149 ~--~~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~~~  181 (197)
                      .  ...+++|.+|..+  ..|+.++.+.+.+.+....
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            2  2334678888765  4689999999988876544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=1.1e-13  Score=99.81  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-------cc--
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RP--   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~--   72 (197)
                      ...++|+++|.+|+|||||+|.+++....  ....+++...........+  ..+.++||||.......       ..  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            35799999999999999999999986542  3344555555555666777  45779999996432211       00  


Q ss_pred             CCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhC-C--CCCEEEEeecCCccCCc
Q 029215           73 LSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRDDK  126 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~~~  126 (197)
                      ......++++||++++... +..+  ...+..+...+ +  -.++++|.||+|.....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~--~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH--HHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            1123578899998876531 1111  22222333222 1  35789999999987644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.47  E-value=7.3e-14  Score=99.78  Aligned_cols=122  Identities=14%  Similarity=0.019  Sum_probs=68.0

Q ss_pred             EEEEEEEcCCcccccccccCC-----CCCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLS-----YRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~-----~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ..+.+.|+||+..+.......     ....+.+++++|+..   +..+......-.....+.  ..|.++|+||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccH
Confidence            346799999987543321111     124568899999754   333322211111112223  7899999999999764


Q ss_pred             ccccc----------------CCCC-CccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          126 KQFFI----------------DHPG-AVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       126 ~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                      .....                .... ......+.........+..+++++||++|+|++++++.|.+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            32100                0000 0000111111112223555899999999999999999988753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.37  E-value=6.2e-13  Score=98.50  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.|++|.|.-.....   ...-+|.+++|.....++..+....-.+        ..+=++|+||+|+.+...      
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gil--------E~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHh--------hhhheeeEeccccccchH------
Confidence            56668888875332221   2234899999999988876665422222        234499999999876532      


Q ss_pred             CCccccHHHHHHHHHHh---------CCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215          134 GAVPITTAQGEELRKLI---------GSPAYIECSSKTQQNVKAVFDAAIKVVL  178 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (197)
                          ........+....         ..++++.+||++|.|++++.++|.+...
T Consensus       207 ----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         207 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence                2222222222221         2347999999999999999999977653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2e-12  Score=95.80  Aligned_cols=104  Identities=18%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCC
Q 029215           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPG  134 (197)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  134 (197)
                      .+.+++|.|.-....   .+...+|.+++|.+....+..+....-+++        .+=++|+||+|......       
T Consensus       148 d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e--------~aDi~VvNKaD~~~~~~-------  209 (327)
T d2p67a1         148 DVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLME--------VADLIVINKDDGDNHTN-------  209 (327)
T ss_dssp             SEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHH--------HCSEEEECCCCTTCHHH-------
T ss_pred             CeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhc--------cccEEEEEeecccchHH-------
Confidence            344666655322111   133468999999988777665544222222        23488899999865321       


Q ss_pred             CccccHHHHHHHHHHh------CCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215          135 AVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKVV  177 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (197)
                       ......+.+.....+      ..++++.|||.+|.|++++++.|.+..
T Consensus       210 -~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         210 -VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             -HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence             001112222222211      124789999999999999999997754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.15  E-value=2.6e-10  Score=82.78  Aligned_cols=83  Identities=19%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCe-------------E--EEEEEEEcCCcccc--
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS-------------T--VNLGLWDTAGQEDY--   67 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~-------------~--~~l~i~D~~G~~~~--   67 (197)
                      .++|.++|.|+||||||+++++.... ..+|+.|+.......+.+.+.             .  -.++++|+||.-.-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            47999999999999999999997654 355666664433333433321             1  24779999996432  


Q ss_pred             --cccccC---CCCCCcEEEEEEeCC
Q 029215           68 --NRLRPL---SYRGADVFILAFSLI   88 (197)
Q Consensus        68 --~~~~~~---~~~~~~~~i~v~d~~   88 (197)
                        ..+...   +++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              234433   357899999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=3.1e-10  Score=83.95  Aligned_cols=83  Identities=18%  Similarity=0.106  Sum_probs=45.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEE-EE---------------------ECCeEEEEEEEEcCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN-VV---------------------VDGSTVNLGLWDTAG   63 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~-~~---------------------~~~~~~~l~i~D~~G   63 (197)
                      ++|+++|.|+||||||+|.|++... ..+|+.|+.+..... ..                     .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999997543 456666653221111 10                     011336789999999


Q ss_pred             ccccc----cc---ccCCCCCCcEEEEEEeCCC
Q 029215           64 QEDYN----RL---RPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        64 ~~~~~----~~---~~~~~~~~~~~i~v~d~~~   89 (197)
                      .-...    .+   .-..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            53321    11   2334678999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=8.2e-10  Score=80.81  Aligned_cols=85  Identities=24%  Similarity=0.253  Sum_probs=60.9

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCcccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~   67 (197)
                      ..++|.++|.|+||||||++.++...  -..+|+.|+.+.....+.+.+.               ...+++.|+||...-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            56899999999999999999999754  3567888875544444544431               246789999986432


Q ss_pred             cc----cc---cCCCCCCcEEEEEEeCCC
Q 029215           68 NR----LR---PLSYRGADVFILAFSLIS   89 (197)
Q Consensus        68 ~~----~~---~~~~~~~~~~i~v~d~~~   89 (197)
                      .+    +-   -..++.+|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence            22    21   223578999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=6.6e-09  Score=75.96  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEE-----------CC-----------------------
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV-----------DG-----------------------   51 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~-----------~~-----------------------   51 (197)
                      .+|+|+|..++|||||+|.|++..+ +....+++.......+..           .+                       
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            4799999999999999999998775 333333321111100000           00                       


Q ss_pred             ----------------eEEEEEEEEcCCccccc-------------ccccCCCCCCc-EEEEEEeCCCHhHHHHHHHHHH
Q 029215           52 ----------------STVNLGLWDTAGQEDYN-------------RLRPLSYRGAD-VFILAFSLISKASYENVAKKWI  101 (197)
Q Consensus        52 ----------------~~~~l~i~D~~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~  101 (197)
                                      ....+.++|+||.....             .+...++..++ ++++|.+++...+-... ..+.
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~~  185 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIA  185 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHHH
Confidence                            01236799999964321             12233444444 56667777665554444 4555


Q ss_pred             HHHhhhCCCCCEEEEeecCCccCC
Q 029215          102 PELRHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus       102 ~~~~~~~~~~p~iiv~nK~D~~~~  125 (197)
                      ..+...  ..++++|+||+|....
T Consensus       186 ~~~~~~--~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEVDPQ--GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHCTT--CSSEEEEEECGGGSCT
T ss_pred             HHhCcC--CCceeeEEeccccccc
Confidence            555544  6789999999999765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.91  E-value=5.8e-10  Score=81.98  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~   31 (197)
                      .+|+|+|..++|||||+|.|++..+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            4799999999999999999998775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=3.1e-08  Score=71.39  Aligned_cols=56  Identities=25%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (197)
                      ...++++|+|.|+||||||+|+|.+...  ....++++....  .+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC---CeEEecCCCc
Confidence            3579999999999999999999998653  233334332211  122222   3669999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.6e-07  Score=65.12  Aligned_cols=86  Identities=17%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CC
Q 029215           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GS  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (197)
                      ...+.|.+++|+++.+++.-......++-.....  ++|.+||+||+|+.+..            ..+....+...+ ..
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~------------~~~~~~~~~~~~~~~   72 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDED------------DLRKVRELEEIYSGL   72 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHH------------HHHHHHHHHHHHTTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHH------------HHHHHHHhhcccccc
Confidence            4568899999999887653333336676666666  89999999999996532            122333344433 22


Q ss_pred             CeEEEeccCCCCCHHHHHHHH
Q 029215          153 PAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i  173 (197)
                      .+++.+|++++.|++++.+.+
T Consensus        73 ~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          73 YPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             SCEEECCTTTCTTHHHHHHHH
T ss_pred             eeEEEeccccchhHhhHHHHh
Confidence            378999999999999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=7.3e-08  Score=66.87  Aligned_cols=58  Identities=16%  Similarity=0.041  Sum_probs=34.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCCC-------CCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      ..+++|++|||||||+|+|........       ..+...+....-+.+.+..   .++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            568999999999999999986532111       0111122222333443322   389999976543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=1.7e-07  Score=65.21  Aligned_cols=85  Identities=21%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             CCCCCcEEEEEEeCCCHhH-HHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH---HHHHHH
Q 029215           74 SYRGADVFILAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG---EELRKL  149 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  149 (197)
                      ...+.|.+++|+++.+++. +..+ ..++-.....  +++.+||+||+|+.++..           ..+..   .+....
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~i-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~~   72 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEAN--DIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYRN   72 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHTT--TCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEecccccccHH-----------HHHHHHHHHHHHhh
Confidence            4568999999999987643 3444 6666665555  899999999999976532           22222   333445


Q ss_pred             hCCCeEEEeccCCCCCHHHHHHHH
Q 029215          150 IGSPAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i  173 (197)
                      .|. +++.+|++++.|++++.+++
T Consensus        73 ~g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          73 IGY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             HTC-CEEECCHHHHTTCTTTGGGG
T ss_pred             ccc-cceeeecCChhHHHHHHHhh
Confidence            677 89999999999988876654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=4.6e-07  Score=65.09  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH---H
Q 029215           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK---L  149 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  149 (197)
                      ..++.+|++++|+|+-++.+..+-  .+...+    .+.|.++|+||+|+.+.               +....+.+   .
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~~---------------~~~~~w~~~f~~   69 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADA---------------AVTQQWKEHFEN   69 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCH---------------HHHHHHHHHHHT
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCch---------------HHHHHHHHHHHh
Confidence            356789999999999887554432  222222    37899999999999653               33333333   3


Q ss_pred             hCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215          150 IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP  180 (197)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (197)
                      .+. ..+.+|+.++.+...+...+.+.+...
T Consensus        70 ~~~-~~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          70 QGI-RSLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TTC-CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             cCC-ccceeecccCCCccccchhhhhhhhhh
Confidence            344 788999999999988888777766543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=1.1e-07  Score=66.08  Aligned_cols=57  Identities=18%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCCCCC------C-CCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNTFPT------D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~~~~------~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (197)
                      ..+++|++|||||||+|+|.......      . ..+...+....-+..++.    .++||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            45799999999999999998753211      1 111111122222334553    278999986654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=2e-06  Score=59.19  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=52.2

Q ss_pred             EEEEEEEcCCccccccc-----------ccCCC-CCCcEEEEEEeCCCHhH-HHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215           54 VNLGLWDTAGQEDYNRL-----------RPLSY-RGADVFILAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKL  120 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~-----------~~~~~-~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (197)
                      +.+.++||+|...+...           ..... ...+-.++|.|++.... .... ......+      -+--++++|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA-KIFKEAV------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH-HHHHHHS------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh-hhhcccc------CCceEEEecc
Confidence            46789999995433211           11111 12577899999976532 3332 2222222      2336788999


Q ss_pred             CccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215          121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA  168 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (197)
                      |....              .-.+..++...+. |+..++  +|.++++
T Consensus       167 De~~~--------------~G~~l~~~~~~~~-Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTAK--------------GGITLAIARELGI-PIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCSC--------------TTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred             cCCCc--------------ccHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence            97543              3456677778887 766665  4555544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.5e-06  Score=59.62  Aligned_cols=91  Identities=13%  Similarity=0.087  Sum_probs=52.4

Q ss_pred             EEEEEEEcCCcccccc--------cc----cCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215           54 VNLGLWDTAGQEDYNR--------LR----PLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL  120 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~--------~~----~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (197)
                      +.+.++||+|......        +.    .......+-.++|.|++... ..... ..+...+      -+--++++|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA-KLFHEAV------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH-HHHHHHS------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH-hhhhhcc------CCceEEEeec
Confidence            4677999999432211        11    11112356889999987653 33333 3333322      1336788999


Q ss_pred             CccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215          121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA  168 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (197)
                      |....              .-.+...+...+. |+..++  +|+++++
T Consensus       165 De~~~--------------~G~~l~~~~~~~~-Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAK--------------GGVIFSVADQFGI-PIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTT--------------TTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred             CCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence            98543              3456677788887 766665  4555543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.16  E-value=8.2e-07  Score=61.04  Aligned_cols=91  Identities=15%  Similarity=0.098  Sum_probs=53.3

Q ss_pred             EEEEEEEcCCcccccc--c----ccCC--CCCCcEEEEEEeCCCHhH-HHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           54 VNLGLWDTAGQEDYNR--L----RPLS--YRGADVFILAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~--~----~~~~--~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      +.+.++||+|...+..  .    ....  .-..+-+++|.|++.... .... ......   .  + +--+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~~~~~---~--~-~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SKFNQA---S--K-IGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHH---C--T-TEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH-hhhhcc---c--C-cceEEEecccCCC
Confidence            4677999999643321  0    0111  123567889999876643 2222 222222   1  2 2357789999854


Q ss_pred             CcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215          125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA  168 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (197)
                                    ..-.+..++...+. |+..++  +|.++++
T Consensus       168 --------------~~G~~l~~~~~~~l-Pi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 --------------KGGGALSAVAATGA-TIKFIG--TGEKIDE  194 (211)
T ss_dssp             --------------CHHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             --------------cccHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence                          35677788888887 766665  4555544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=1.6e-06  Score=59.35  Aligned_cols=84  Identities=15%  Similarity=0.058  Sum_probs=49.4

Q ss_pred             EEEEEEEcCCcccccccc-------cC-----CCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215           54 VNLGLWDTAGQEDYNRLR-------PL-----SYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL  120 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~-------~~-----~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (197)
                      +.+.++||+|...+....       ..     .....+-.++|.|++... ..... ..+...+.      +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~~------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-KKFHEAVG------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-HHHHHHHC------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-HHhhhccC------CceEEEecc
Confidence            467799999954333210       00     112457788999987764 33333 33333332      225688999


Q ss_pred             CccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      |....              .-.+..++...+. |+..++
T Consensus       162 Det~~--------------~G~~l~~~~~~~~-Pi~~i~  185 (207)
T d1okkd2         162 DGTAK--------------GGVLIPIVRTLKV-PIKFVG  185 (207)
T ss_dssp             TSSCC--------------CTTHHHHHHHHCC-CEEEEE
T ss_pred             CCCCC--------------ccHHHHHHHHHCC-CEEEEe
Confidence            97643              2345667777887 665555

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=9.5e-06  Score=56.23  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      =.+|-|.-|+|||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            3678899999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.00  E-value=3.6e-06  Score=57.65  Aligned_cols=85  Identities=22%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             EEEEEEEcCCcccccccc----cCC--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215           54 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  127 (197)
                      +.+.++||+|........    ...  ..+.+-+++|.|++..+.-......+...+.      +--++++|.|....  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGCSS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCcccc--
Confidence            467799999964433211    111  2356788999998776433323233333322      22478899997542  


Q ss_pred             cccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215          128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                                  .-.+..++...+. |+..++
T Consensus       165 ------------~G~~l~~~~~~~~-Pi~~i~  183 (207)
T d1ls1a2         165 ------------GGAALSARHVTGK-PIYFAG  183 (207)
T ss_dssp             ------------CHHHHHHHHHHCC-CEEEEC
T ss_pred             ------------chHHHHHHHHHCC-CEEEEe
Confidence                        3466777788887 665554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.99  E-value=2.1e-06  Score=58.19  Aligned_cols=28  Identities=18%  Similarity=0.146  Sum_probs=25.5

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      |.++++..|+|+|+|||||||++.+|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            7888889999999999999999988864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.91  E-value=3.2e-06  Score=56.28  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .||+|+|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999998875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=5.3e-06  Score=55.35  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.78  E-value=7.9e-06  Score=53.99  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.1

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +++..+|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46778999999999999999988865

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.69  E-value=9.2e-06  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+|+|.|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.2e-05  Score=52.72  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++|+|++|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.63  E-value=1.1e-05  Score=54.33  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++.+|+|+|++||||||++..|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.63  E-value=1.7e-05  Score=53.44  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999988864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.59  E-value=2.3e-05  Score=52.82  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.+-++|+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            34668999999999999999988875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.57  E-value=2.1e-05  Score=50.72  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |++.|+||||||||+++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=2.1e-05  Score=52.38  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .||+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.8e-05  Score=51.85  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++|+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=3.3e-05  Score=51.52  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|+|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=4.6e-05  Score=50.51  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.0

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+.+.=|+++|.|||||||++.++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999998854

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.47  E-value=3.2e-05  Score=51.59  Aligned_cols=22  Identities=18%  Similarity=0.139  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+|+|+|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.46  E-value=3.2e-05  Score=50.71  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -|+|.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=3.7e-05  Score=50.46  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3.7e-05  Score=51.10  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+|+++|+|||||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.7e-05  Score=49.40  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+++|++||||||+.+.|-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.2e-05  Score=50.61  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.1e-05  Score=50.21  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999987763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=9.7e-05  Score=49.75  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=21.7

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+.--|+++|+|||||||+...|..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556689999999999999988865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00012  Score=52.25  Aligned_cols=62  Identities=18%  Similarity=0.094  Sum_probs=38.5

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCCCC----CCCCCceeeceeEEEEE-CCeEEEEEEEEcCCccc
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP----TDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED   66 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~   66 (197)
                      +..=|.|+|+.++|||+|+|.|++....    ....+++...+...... .+....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            3456889999999999999999976531    11222222222222222 33345677999999653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=7.6e-05  Score=50.66  Aligned_cols=22  Identities=36%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=8.9e-05  Score=49.65  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.22  E-value=7.5e-05  Score=48.94  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+++|.+||||||+.+.+-.
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999977743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.20  E-value=9.6e-05  Score=48.95  Aligned_cols=19  Identities=26%  Similarity=0.139  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00011  Score=51.35  Aligned_cols=21  Identities=19%  Similarity=0.162  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +++|+|++|+|||||++.+.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999988866

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.00011  Score=49.01  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999998753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0001  Score=48.24  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -=++++|++||||||+.+.|..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3466799999999999998865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.18  E-value=0.00014  Score=47.82  Aligned_cols=25  Identities=12%  Similarity=0.068  Sum_probs=20.8

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-+-|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999977753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.00014  Score=48.61  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=21.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..++=|+|-|++|||||||.++|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467799999999999999998864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.17  E-value=0.0001  Score=48.15  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +|+++|++||||||+...|-.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987743

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00012  Score=48.72  Aligned_cols=20  Identities=20%  Similarity=0.318  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |+|+||+|+||+||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999885

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.00011  Score=49.80  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999998663

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.0013  Score=45.63  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-++++.|++|+||||++..+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999877653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.13  E-value=0.00015  Score=51.05  Aligned_cols=25  Identities=16%  Similarity=0.100  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+.-|++.|+||+|||||+..+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999888653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00014  Score=50.41  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00014  Score=48.85  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.11  E-value=0.00015  Score=50.65  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|+|||||++.+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.10  E-value=0.00014  Score=47.76  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |++.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999988865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=0.00014  Score=50.30  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            478999999999999987755

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00016  Score=49.26  Aligned_cols=21  Identities=10%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00016  Score=48.54  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +..=+++++|+||||||+++..|-.
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHH
Confidence            4456899999999999999966654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00017  Score=50.59  Aligned_cols=21  Identities=19%  Similarity=0.240  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|||||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999988765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.05  E-value=0.00015  Score=50.95  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|||||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999988865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.05  E-value=0.00018  Score=49.98  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      ++++|++|+|||||++.+.+-
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCChHHHHHHHHHcC
Confidence            568999999999999988764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.04  E-value=0.00017  Score=47.23  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |++.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56679999999999998875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.04  E-value=0.00018  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -+.++|++|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999988764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.00016  Score=48.64  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      --|+|+|+|||||||++.+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.96  E-value=0.00023  Score=46.76  Aligned_cols=19  Identities=21%  Similarity=0.184  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      |+++|++||||||+.+.|-
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00021  Score=51.00  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|+|++|+|||||++.+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999998876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.94  E-value=0.00016  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3789999999999999988764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.94  E-value=0.00024  Score=49.35  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .+.++|++|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.94  E-value=0.00027  Score=47.42  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             CCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..++++-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            355778999999999999999998865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0002  Score=49.77  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999988663

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.93  E-value=0.00027  Score=48.36  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.+.|+|-||+||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999988764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00027  Score=49.03  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.||||+||||+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00025  Score=50.20  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...=+++++|+||||||+++..+..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHH
Confidence            4456899999999999999966654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.91  E-value=0.00025  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999998764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00027  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999887653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00013  Score=48.74  Aligned_cols=22  Identities=18%  Similarity=0.210  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..|.+.|.+||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999988854

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00036  Score=47.45  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999988754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.86  E-value=0.00033  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -+|+|.|+.|||||||++.|..-.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998644

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00021  Score=49.53  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            378999999999999998876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00032  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.||||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.81  E-value=0.00021  Score=50.24  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      +++|+|++|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999976654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.79  E-value=0.00031  Score=46.56  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=16.7

Q ss_pred             EE-EEECCCCCcHHHHHHHHh
Q 029215            8 KC-VTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         8 ~i-~v~G~~~~GKstli~~l~   27 (197)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            45 467999999999998875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.78  E-value=0.00038  Score=48.99  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            478999999999999998865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.78  E-value=0.00057  Score=47.75  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-.|++.|+||+|||+|++.+-.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.00039  Score=48.83  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      ++++|+.|+|||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.75  E-value=0.0002  Score=49.77  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5789999999999999988763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.68  E-value=0.00054  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999987765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00076  Score=44.93  Aligned_cols=26  Identities=19%  Similarity=0.042  Sum_probs=22.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhCC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .++-|+|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            56789999999999999998886543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.0005  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.++++||||||||.|.+.+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35689999999999999988865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.62  E-value=0.00076  Score=47.17  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999888753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00084  Score=46.70  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.+++.||+|+||||++..+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.53  E-value=0.00061  Score=46.32  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=21.8

Q ss_pred             CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..+..-|.+.|.||||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999988864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00074  Score=45.92  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=17.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      =|+|.|||||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999987764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.00071  Score=47.41  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999988764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.45  E-value=0.00068  Score=47.72  Aligned_cols=20  Identities=20%  Similarity=0.237  Sum_probs=16.8

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +++.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999988765

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.00089  Score=46.73  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+|||+|++.+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3599999999999999999875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0011  Score=47.76  Aligned_cols=25  Identities=20%  Similarity=0.062  Sum_probs=21.4

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.++=|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4578999999999999999977753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.0012  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            4589999999999999987764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0012  Score=46.27  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -.+++.||||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4599999999999999998865

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0011  Score=45.38  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4689999999999999987754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.00096  Score=50.58  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -+|+++||+|||||-|+++|-.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998854

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.0013  Score=46.16  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +-.+++.||||+|||++++.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            34699999999999999998876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0012  Score=45.19  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++++.|++|+||||++..+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999888753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.002  Score=45.85  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=20.3

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~   27 (197)
                      ..++=|+|.|++|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            457889999999999999996653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.0019  Score=43.44  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0033  Score=42.48  Aligned_cols=26  Identities=12%  Similarity=0.093  Sum_probs=21.2

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhCCC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSNTF   31 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~~~   31 (197)
                      .+-|+|.|..||||||+++.|....+
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHCCC
Confidence            35688999999999999988765433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.00084  Score=49.98  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=21.9

Q ss_pred             cceeEEEEECCCCCcHHHHHH----HHhhCCCCC
Q 029215            4 SRFIKCVTVGDGAVGKTCMLI----SYTSNTFPT   33 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~----~l~~~~~~~   33 (197)
                      +..=+++++|+||||||+++.    ++..+..+.
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~   74 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE   74 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCH
Confidence            344578999999999999984    455555433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0019  Score=45.49  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      .-.|++.|++|+|||+|++.+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            346999999999999999998653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.96  E-value=0.001  Score=48.50  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++++.|+||+|||+|++++-.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999998853

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.94  E-value=0.014  Score=37.43  Aligned_cols=24  Identities=25%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhhC
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ..-|++-|+=|+|||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            456889999999999999988864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.86  E-value=0.0035  Score=41.16  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .-|++.|++|+||||+.-.+....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999999888754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0027  Score=42.61  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++|.|+||+|||+|+..+..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999998887654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0026  Score=42.89  Aligned_cols=20  Identities=25%  Similarity=0.109  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999987763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.67  E-value=0.0056  Score=41.12  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999987754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.67  E-value=0.0037  Score=41.03  Aligned_cols=24  Identities=13%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      .-|++.|++|+||||+.-.|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999887754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.0034  Score=43.02  Aligned_cols=23  Identities=13%  Similarity=0.102  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++|.|+||+|||+|+..+..+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999998887554

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.00076  Score=44.99  Aligned_cols=18  Identities=17%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             EEECCCCCcHHHHHHHHh
Q 029215           10 VTVGDGAVGKTCMLISYT   27 (197)
Q Consensus        10 ~v~G~~~~GKstli~~l~   27 (197)
                      +|+|+.|+|||||+..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999998875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.48  E-value=0.0024  Score=45.38  Aligned_cols=22  Identities=9%  Similarity=0.196  Sum_probs=15.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~   27 (197)
                      +.=|+|.|++||||||+.+.|.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            3459999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.45  E-value=0.0038  Score=43.06  Aligned_cols=23  Identities=17%  Similarity=0.110  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++|.|+||+|||+|.-.+..+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999998886544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.45  E-value=0.0045  Score=45.58  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-+++++||+|||||-|.++|-.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            456799999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.42  E-value=0.0053  Score=40.00  Aligned_cols=25  Identities=16%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhCCC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~~~   31 (197)
                      .-|++.|++|+||||+.-.+....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988887643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.42  E-value=0.0055  Score=45.06  Aligned_cols=23  Identities=17%  Similarity=0.028  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-.+++.||||+|||+|+..+..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0042  Score=41.99  Aligned_cols=20  Identities=20%  Similarity=0.135  Sum_probs=16.4

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |++-|..||||||++..|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998866643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0033  Score=43.09  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0074  Score=43.47  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++||+|||||.|...+-.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999987753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.0035  Score=44.70  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=15.6

Q ss_pred             EEECCCCCcHHHHHHHH
Q 029215           10 VTVGDGAVGKTCMLISY   26 (197)
Q Consensus        10 ~v~G~~~~GKstli~~l   26 (197)
                      +++|+.|+||||+++++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68899999999999877

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.10  E-value=0.0058  Score=41.90  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~   29 (197)
                      -++|.|+||+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999887654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.03  E-value=0.0072  Score=43.56  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=16.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +++.|+||+|||.|.+.+-.
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999988764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.94  E-value=0.0086  Score=42.25  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCcHHHHHHHHhh
Q 029215            6 FIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..-|+|.|..|+|||||+..+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999988765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0082  Score=41.24  Aligned_cols=23  Identities=17%  Similarity=0.135  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++|.|++|+|||+|...+..+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.78  E-value=0.0074  Score=41.24  Aligned_cols=23  Identities=22%  Similarity=0.062  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCC
Q 029215            8 KCVTVGDGAVGKTCMLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~~~   30 (197)
                      -++|.|++|+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999998887544

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0077  Score=41.27  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578899999999999988875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0095  Score=40.95  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=17.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999977653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.01  Score=39.95  Aligned_cols=21  Identities=5%  Similarity=0.156  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999986654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.57  E-value=0.0092  Score=44.25  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=15.9

Q ss_pred             EEECCCCCcHHHHHHHHh
Q 029215           10 VTVGDGAVGKTCMLISYT   27 (197)
Q Consensus        10 ~v~G~~~~GKstli~~l~   27 (197)
                      +|+|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999998873

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.54  E-value=0.011  Score=44.10  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      |+|.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999888763

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.53  E-value=0.01  Score=39.61  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++.=.+++.|++++|||.|+..+..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3456789999999999999988765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.011  Score=39.99  Aligned_cols=20  Identities=20%  Similarity=0.056  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      |++=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999987754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.36  E-value=0.016  Score=42.01  Aligned_cols=25  Identities=16%  Similarity=0.102  Sum_probs=22.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ...++|.|=|.-|+||||+++.|..
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CceEEEEEECCccCCHHHHHHHHHH
Confidence            3568999999999999999998865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.35  E-value=0.0085  Score=42.46  Aligned_cols=15  Identities=27%  Similarity=0.671  Sum_probs=13.3

Q ss_pred             EEEECCCCCcHHHHH
Q 029215            9 CVTVGDGAVGKTCML   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.34  E-value=0.013  Score=41.10  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999977654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.29  E-value=0.015  Score=42.08  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhh
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.22  E-value=0.011  Score=42.73  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=22.2

Q ss_pred             ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      ..++|.|=|..|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.20  E-value=0.015  Score=39.23  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      +.+.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999887653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.19  E-value=0.013  Score=39.67  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=16.8

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 029215            8 KCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~   27 (197)
                      -++|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999986654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.98  E-value=0.011  Score=42.14  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=13.4

Q ss_pred             EEEECCCCCcHHHHH
Q 029215            9 CVTVGDGAVGKTCML   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.013  Score=43.77  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      -+++|+|.+|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4689999999999999876654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.60  E-value=0.022  Score=38.91  Aligned_cols=21  Identities=19%  Similarity=-0.039  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      -|+|.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.02  Score=40.48  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      =|++|+|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            47999999999999999777653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.021  Score=39.71  Aligned_cols=19  Identities=21%  Similarity=0.399  Sum_probs=16.3

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999996664

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.15  E-value=0.034  Score=39.85  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=17.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 029215            8 KCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~~   28 (197)
                      .++++|++|+|||.+...+-.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999976653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.93  E-value=0.04  Score=38.53  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=21.2

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      ++.-.+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3456788999999999999988765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.042  Score=40.16  Aligned_cols=18  Identities=28%  Similarity=0.329  Sum_probs=15.0

Q ss_pred             EEEEECCCCCcHHHHHHH
Q 029215            8 KCVTVGDGAVGKTCMLIS   25 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~   25 (197)
                      -.+|.|+||+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            367889999999998744

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=92.26  E-value=0.38  Score=30.90  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      .+|..+++.......+.+...  +.|+|++|.......              ..+++.++++..++ |++.+
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt   56 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVATM   56 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEEE
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEec
Confidence            467788888778888888777  999999999888643              45788999999998 77654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.86  E-value=0.32  Score=31.40  Aligned_cols=102  Identities=15%  Similarity=0.139  Sum_probs=57.1

Q ss_pred             cceeEEEEECC-CCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-------------c-
Q 029215            4 SRFIKCVTVGD-GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------------N-   68 (197)
Q Consensus         4 ~~~~~i~v~G~-~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------------~-   68 (197)
                      ++.+||.|+|. .++|- +|+-+|..+...+....                +.+.++|.+.....             . 
T Consensus        22 k~~~kV~I~GA~G~Ig~-~l~~~La~g~v~g~~~~----------------i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISN-HLLFKLASGEVFGQDQP----------------IALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCCEEEEEETTTSHHHH-HHHHHHHHTTTTCTTCC----------------EEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCCcEEEEECCCcHHHH-HHHHHHHcCcccCCCce----------------EEEEEecCccccchhcchhhhhccccccc
Confidence            46799999997 55664 45556665543222111                45566776552110             0 


Q ss_pred             -------ccccCCCCCCcEEEEEEeCCCH------hHH---HHHHHHHHHHHhhhCC-CCCEEEEeecCCc
Q 029215           69 -------RLRPLSYRGADVFILAFSLISK------ASY---ENVAKKWIPELRHYAP-GVPIILVGTKLDL  122 (197)
Q Consensus        69 -------~~~~~~~~~~~~~i~v~d~~~~------~s~---~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~  122 (197)
                             .-....+.++|+++++......      +-+   ..+...+.+.+.++.+ +.-+++|+|-.|.
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                   0011236789999998765431      112   1223455666777764 5667788787774

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.69  E-value=0.059  Score=37.54  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      +.+.|++++|||+|+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            578999999999999666543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.36  E-value=0.064  Score=36.94  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhh
Q 029215            7 IKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999999988754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.14  E-value=0.055  Score=37.90  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            37999999999999999877654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.95  E-value=0.098  Score=31.65  Aligned_cols=25  Identities=16%  Similarity=0.042  Sum_probs=21.6

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      +.-|.|.+-|..|+|||||.+.|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3458999999999999999988864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.74  E-value=0.071  Score=34.81  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 029215            9 CVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~~   29 (197)
                      ++|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.11  Score=35.31  Aligned_cols=19  Identities=16%  Similarity=0.233  Sum_probs=16.8

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      ++|-|+..+||||+++.+-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6888999999999997764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.65  E-value=0.48  Score=31.51  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=44.8

Q ss_pred             EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccC
Q 029215           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRD  124 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~  124 (197)
                      .+.+.++|+++....  .....+..+|.++++...+ ..++... ......+.+.  +.|++ +|.|+.+...
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~~~~~--~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDT-MKVGIVLKKA--GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHH-HHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchh-hHHHHHHhhh--hhhhhhhhhccccccc
Confidence            467789999875432  2233456789999998864 5566665 5556666655  77776 8899998654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.31  E-value=0.13  Score=34.85  Aligned_cols=19  Identities=21%  Similarity=0.349  Sum_probs=16.8

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 029215            9 CVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~   27 (197)
                      ++|-|+..+||||+++.+-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999997664

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.15  E-value=0.47  Score=29.74  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEEeCCC-----H-hHHH---HHHHHHHHHHhhhCC-CCCEEEEeecCCc
Q 029215           74 SYRGADVFILAFSLIS-----K-ASYE---NVAKKWIPELRHYAP-GVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~-----~-~s~~---~~~~~~~~~~~~~~~-~~p~iiv~nK~D~  122 (197)
                      .++++|++++......     + +-+.   .....+...+.++.+ +.-++++.|-+|.
T Consensus        77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            4678999999876533     2 1121   222455666677664 4556667777774

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.03  E-value=0.16  Score=35.05  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=46.6

Q ss_pred             EEEEEEEEcCCccccccc-ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCccCCccc
Q 029215           53 TVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDLRDDKQF  128 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~~~~~~~  128 (197)
                      .+.+.++|+|+.-..... .......+|.++++.+. +..++... ......+....  .+.++ -++.|+.+....   
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~---  189 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVANE---  189 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSCC---
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCCc---
Confidence            356779999874322211 11122457887777765 55666655 44444454432  23333 477898776442   


Q ss_pred             ccCCCCCccccHHHHHHHHHHhCC
Q 029215          129 FIDHPGAVPITTAQGEELRKLIGS  152 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                                 .+..+++++..+.
T Consensus       190 -----------~~~~~~~~~~~~~  202 (269)
T d1cp2a_         190 -----------YELLDAFAKELGS  202 (269)
T ss_dssp             -----------HHHHHHHHHHHTC
T ss_pred             -----------cchhhhhHhhcCC
Confidence                       3445566666665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.60  E-value=0.21  Score=32.94  Aligned_cols=25  Identities=12%  Similarity=0.024  Sum_probs=21.1

Q ss_pred             cceeEEEEECCCCCcHHHHHHHHhh
Q 029215            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~l~~   28 (197)
                      .....+++-|++|+|||+++..+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999977654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.81  E-value=0.22  Score=34.60  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=16.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999966653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.47  E-value=0.21  Score=34.75  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 029215            9 CVTVGDGAVGKTCMLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~l~~   28 (197)
                      +.+.|++++|||+|+-.+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56899999999999977654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.47  E-value=0.16  Score=36.09  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=13.6

Q ss_pred             EEEECCCCCcHHHHH
Q 029215            9 CVTVGDGAVGKTCML   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      -++.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            379999999999988

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.47  E-value=0.18  Score=30.77  Aligned_cols=20  Identities=10%  Similarity=-0.042  Sum_probs=15.9

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 029215            8 KCVTVGDGAVGKTCMLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~l~   27 (197)
                      ..+|.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45779999999999885544

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.46  E-value=1.1  Score=27.73  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCc----------------
Q 029215            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------------   64 (197)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------------   64 (197)
                      |.+....||.|+|.-++|.+.-..-...+.. +                     .+.++|....                
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~-~---------------------el~L~Di~~~~~~g~a~Dl~~~~~~~   58 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIA-D---------------------EIVLIDANESKAIGDAMDFNHGKVFA   58 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCC-S---------------------EEEEECSSHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCC-c---------------------eEEEEeeccccccchhccHhhCcccc
Confidence            6777888999999877886655443333221 1                     1334443210                


Q ss_pred             ---ccccccccCCCCCCcEEEEEEeCCCH------hHHH---HHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215           65 ---EDYNRLRPLSYRGADVFILAFSLISK------ASYE---NVAKKWIPELRHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        65 ---~~~~~~~~~~~~~~~~~i~v~d~~~~------~s~~---~~~~~~~~~~~~~~~~~p~iiv~nK~D~  122 (197)
                         ..........+.++|++++..-....      +.+.   .....+.+.+.++.|+.-+++|-|=+|.
T Consensus        59 ~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~  128 (148)
T d1ldna1          59 PKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI  128 (148)
T ss_dssp             SSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred             CCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHH
Confidence               00001112346789988887654321      2222   2235566777778787766777677774

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.42  E-value=0.48  Score=29.35  Aligned_cols=44  Identities=14%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  124 (197)
                      .++.|++++    ...+-|.+........+...  +++|++.|-..|-..
T Consensus        78 ~~~~dvI~I----DE~QFf~d~~~~~~~~l~~~--g~~Viv~GLd~Df~~  121 (141)
T d1xx6a1          78 EEDTEVIAI----DEVQFFDDEIVEIVNKIAES--GRRVICAGLDMDFRG  121 (141)
T ss_dssp             CTTCSEEEE----CSGGGSCTHHHHHHHHHHHT--TCEEEEEECSBCTTS
T ss_pred             cccccEEEE----eehhhccccHHHHHHhheeC--CcEEEEEEecccccc
Confidence            345664333    44555544323334555555  889999998777644

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.36  E-value=0.16  Score=35.71  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            47899999999999998766543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.79  E-value=0.2  Score=35.00  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHhhC
Q 029215            7 IKCVTVGDGAVGKTCMLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~l~~~   29 (197)
                      =|++++|.+|+|||+|+..+..+
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            36889999999999999766544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=0.25  Score=32.53  Aligned_cols=19  Identities=26%  Similarity=0.386  Sum_probs=15.7

Q ss_pred             EEEEECCC-CCcHHHHHHHH
Q 029215            8 KCVTVGDG-AVGKTCMLISY   26 (197)
Q Consensus         8 ~i~v~G~~-~~GKstli~~l   26 (197)
                      |+.|.|.. ||||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            78899995 99999988443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.39  E-value=0.16  Score=36.09  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=13.7

Q ss_pred             EEEECCCCCcHHHHH
Q 029215            9 CVTVGDGAVGKTCML   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            488999999999987

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.02  E-value=0.21  Score=35.61  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.8

Q ss_pred             EEEECCCCCcHHHHH
Q 029215            9 CVTVGDGAVGKTCML   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      -++.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            469999999999998

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.94  E-value=1.7  Score=26.99  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=32.8

Q ss_pred             CCCCCCcEEEEEEeCCC----------HhH-H---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215           73 LSYRGADVFILAFSLIS----------KAS-Y---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~----------~~s-~---~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  122 (197)
                      ..+.++|++++..-...          +.. +   ..+...+.+.+.+++|+.-++++-|=+|.
T Consensus        67 ~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~  130 (150)
T d1t2da1          67 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV  130 (150)
T ss_dssp             GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred             cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Confidence            45678999998876532          211 2   23346667778888888767777777775

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.91  E-value=0.29  Score=33.90  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=25.5

Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029215           79 DVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD  121 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D  121 (197)
                      +.+++|... +.-+..+. ......+...  ++|+ -+|+|+.-
T Consensus       199 t~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEEC
T ss_pred             ceeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCCc
Confidence            355666554 45566666 6677777777  6776 47779863

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.23  E-value=0.92  Score=28.32  Aligned_cols=102  Identities=21%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             cceeEEEEECC-CCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc---------c-----
Q 029215            4 SRFIKCVTVGD-GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------N-----   68 (197)
Q Consensus         4 ~~~~~i~v~G~-~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~-----   68 (197)
                      +.++||.|+|. .++|.+... .|..+......                ....+.++|.......         .     
T Consensus         1 s~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~~----------------~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLY-SIGNGSVFGKD----------------QPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHH-HHHTTTTTCTT----------------CCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CCceEEEEECCCCHHHHHHHH-HHHHHHhcCCC----------------CccEEEEecCccchhhhhhhhhhhccccccc
Confidence            35789999995 788887655 34443322211                1145556776542110         0     


Q ss_pred             --cc-----ccCCCCCCcEEEEEEeCCC------HhHHHH---HHHHHHHHHhhhCCCCC-EEEEeecCCc
Q 029215           69 --RL-----RPLSYRGADVFILAFSLIS------KASYEN---VAKKWIPELRHYAPGVP-IILVGTKLDL  122 (197)
Q Consensus        69 --~~-----~~~~~~~~~~~i~v~d~~~------~~s~~~---~~~~~~~~~~~~~~~~p-~iiv~nK~D~  122 (197)
                        ..     ....+.++|++++.-....      .+.+..   ....+...+.++.++.. ++++.|-+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence              00     0123567888888764422      222222   22455556666666555 4556677774

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.69  E-value=0.36  Score=33.21  Aligned_cols=40  Identities=8%  Similarity=-0.041  Sum_probs=22.7

Q ss_pred             CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029215           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD  121 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D  121 (197)
                      ++.+++|... +..++.+. ..+...+...  +.|+ -+|.|+.-
T Consensus       183 ~~~~vlV~~p-~~~~~~~~-~r~~~~l~~~--~~~~~~iV~N~~~  223 (279)
T d1ihua2         183 RTKVLLVTLP-ETTPVLEA-ANLQADLERA--GIHPWGWIINNSL  223 (279)
T ss_dssp             TEEEEEEECS-SHHHHHHH-HHHHHHHHHT--TCCCCEEEEEEES
T ss_pred             cccceEeccc-cHhHHHHH-HHHHHHHHhc--CCCccEEEEcCCc
Confidence            4556666443 45566666 5666666666  4444 35567754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.55  E-value=2.9  Score=25.63  Aligned_cols=49  Identities=10%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             CCCCCcEEEEEEeCCC-----H-hHH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215           74 SYRGADVFILAFSLIS-----K-ASY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~-----~-~s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  122 (197)
                      .++++|++++..-...     + +.+   ....+.+.+.+.++.++.-++++.|=.|.
T Consensus        65 ~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~  122 (144)
T d1mlda1          65 CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS  122 (144)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred             HhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Confidence            3578998888765322     1 112   22335667777888788777888788774

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.32  E-value=0.37  Score=33.51  Aligned_cols=68  Identities=12%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             EEEEEEEEcCCccccccccc-CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCc
Q 029215           53 TVNLGLWDTAGQEDYNRLRP-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDL  122 (197)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~  122 (197)
                      .+.+.++|+|+......... .....++.++++.. .+..+.... ..+...+....  ++.++ -+|.|+.+.
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~  189 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNT  189 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcc
Confidence            36667888877532211111 11234666666644 445555555 44444443322  34554 377888764

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.35  E-value=3  Score=26.45  Aligned_cols=54  Identities=17%  Similarity=0.142  Sum_probs=39.6

Q ss_pred             CCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215           88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC  158 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++.+..++........+...  +.|++++|..+....              ..+++.++++..++ |++.+
T Consensus        11 ~~~~~~~~~i~~~~~~l~~A--krPvii~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt   64 (179)
T d1pvda1          11 NDAESEKEVIDTILALVKDA--KNPVILADACCSRHD--------------VKAETKKLIDLTQF-PAFVT   64 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC--SSEEEEECGGGTTTS--------------THHHHHHHHHHHCC-CEEEC
T ss_pred             CCCcccHHHHHHHHHHHHhC--CCCEEEEecccchhh--------------hHHHHHHHHHhhCc-eEEec
Confidence            34555555556677777766  899999998876543              46788999999998 77654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.98  E-value=0.48  Score=29.24  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=13.3

Q ss_pred             EEECCCCCcHHH-HHHHH
Q 029215           10 VTVGDGAVGKTC-MLISY   26 (197)
Q Consensus        10 ~v~G~~~~GKst-li~~l   26 (197)
                      +++||=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 55544

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=80.53  E-value=1.9  Score=26.89  Aligned_cols=55  Identities=9%  Similarity=-0.103  Sum_probs=41.0

Q ss_pred             CCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215           88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS  159 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (197)
                      ++.+.++...+.....+...  +.|+++++.......              ..++++++++..++ |++.+.
T Consensus        10 ~~~~~l~a~~~~a~~~l~~A--krP~il~G~gv~~~~--------------a~~~l~~l~e~~~i-Pv~tt~   64 (161)
T d1ovma1          10 ADSACLKAFRDAAENKLAMS--KRTALLADFLVLRHG--------------LKHALQKWVKEVPM-AHATML   64 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHTC--SCEEEEECHHHHHTT--------------CHHHHHHHHHHSCC-EEEECG
T ss_pred             CCHHHHHHHHHHHHHHHHcC--CCcEEEECcCcChhh--------------hHHHHHHHHHhcCc-cEEEcC
Confidence            45666666656666777766  899999997766433              45788999999998 888653