Citrus Sinensis ID: 029216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
cHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccc
cHHHHHHHHHHcccHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcc
MFQATKDIFREeglwgfwrgnvpalLMVMPYTAIQFTVLHKLKtfaagsskaenHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILasqgepkvyptMRSAFVDIISTrgfrglyaglspTLVEIipyaglqfgtydtFKRWTmdwnrirssntsstgadnnlssFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
MFQATKDifreeglwgFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASqgepkvypTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSntsstgadnnLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
******DIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIR***********NLSSFQLFVCGLAAGTCAKLVCHPLDVVK*****
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSS******NLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRI*************LSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRS*********NNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query197 2.2.26 [Sep-21-2011]
Q5IS35320 Mitochondrial thiamine py N/A no 0.923 0.568 0.38 8e-33
Q9DAM5318 Mitochondrial thiamine py yes no 0.939 0.581 0.395 9e-33
Q29RM1318 Mitochondrial thiamine py yes no 0.939 0.581 0.380 6e-32
Q9HC21320 Mitochondrial thiamine py yes no 0.923 0.568 0.37 6e-31
Q5NVC1320 Mitochondrial thiamine py yes no 0.923 0.568 0.36 1e-29
A6SL61322 Mitochondrial thiamine py N/A no 0.893 0.546 0.380 4e-28
A7ER02322 Mitochondrial thiamine py N/A no 0.893 0.546 0.375 6e-28
Q7S2H8333 Mitochondrial thiamine py N/A no 0.903 0.534 0.373 2e-27
Q1E7P0319 Mitochondrial thiamine py N/A no 0.857 0.529 0.376 9e-27
A2R5A0321 Mitochondrial thiamine py yes no 0.893 0.548 0.333 4e-25
>sp|Q5IS35|TPC_MACFA Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1 Back     alignment and function desciption
 Score =  140 bits (352), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 109/200 (54%), Gaps = 18/200 (9%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           +FQA++ I +EEGL  FW+G++PA ++ + Y A+QF     L       S  +       
Sbjct: 62  IFQASRQILQEEGLTAFWKGHIPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAR---EF 118

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGL 120
            + +V G LA C AT+  +P D+LRT  A+QGEPKVY T+R A   +  + G +  Y GL
Sbjct: 119 SVHFVCGGLAACTATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGL 178

Query: 121 SPTLVEIIPYAGLQFGTYDTFK---RWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAA 177
           +PTL+ I PYAGLQF  Y + K   +W M     ++ N             Q  +CG  A
Sbjct: 179 APTLIAIFPYAGLQFSCYSSLKHLYKWAMPAEGKKNEN------------LQNLLCGSGA 226

Query: 178 GTCAKLVCHPLDVVKKRFQV 197
           G  +K + +PLD+ KKR QV
Sbjct: 227 GVISKTLTYPLDLFKKRLQV 246
Mitochondrial transporter mediating uptake of thiamine pyrophosphate (ThPP) into mitochondria.
Macaca fascicularis (taxid: 9541)
>sp|Q9DAM5|TPC_MOUSE Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1 Back     alignment and function description
>sp|Q29RM1|TPC_BOVIN Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC21|TPC_HUMAN Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1 Back     alignment and function description
>sp|Q5NVC1|TPC_PONAB Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1 Back     alignment and function description
>sp|A6SL61|TPC1_BOTFB Mitochondrial thiamine pyrophosphate carrier 1 OS=Botryotinia fuckeliana (strain B05.10) GN=tpc1 PE=3 SV=1 Back     alignment and function description
>sp|A7ER02|TPC1_SCLS1 Mitochondrial thiamine pyrophosphate carrier 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tpc1 PE=3 SV=1 Back     alignment and function description
>sp|Q7S2H8|TPC1_NEUCR Mitochondrial thiamine pyrophosphate carrier 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tpc-1 PE=3 SV=1 Back     alignment and function description
>sp|Q1E7P0|TPC1_COCIM Mitochondrial thiamine pyrophosphate carrier 1 OS=Coccidioides immitis (strain RS) GN=TPC1 PE=3 SV=1 Back     alignment and function description
>sp|A2R5A0|TPC1_ASPNC Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tpc1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
224123216 329 predicted protein [Populus trichocarpa] 0.888 0.531 0.883 5e-99
356529708 328 PREDICTED: mitochondrial thiamine pyroph 0.979 0.588 0.862 1e-97
224107339 339 predicted protein [Populus trichocarpa] 0.842 0.489 0.888 1e-97
356521873 331 PREDICTED: mitochondrial thiamine pyroph 0.979 0.583 0.862 2e-96
225432282 330 PREDICTED: mitochondrial thiamine pyroph 0.994 0.593 0.862 4e-96
363814342 327 uncharacterized protein LOC100805353 [Gl 0.979 0.590 0.862 1e-94
255551717 331 Mitochondrial deoxynucleotide carrier, p 0.868 0.516 0.888 2e-94
356556120 328 PREDICTED: mitochondrial thiamine pyroph 0.979 0.588 0.847 3e-94
15239754 339 Mitochondrial substrate carrier family p 0.883 0.513 0.817 3e-93
297795621 338 mitochondrial substrate carrier family p 0.883 0.514 0.817 1e-92
>gi|224123216|ref|XP_002330367.1| predicted protein [Populus trichocarpa] gi|222871571|gb|EEF08702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 181/197 (91%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           M QATKDIFREEGL GFWRGNVPALLMVMPYTAIQF VLHKLKTFAAGSSK E+HI+LS 
Sbjct: 63  MLQATKDIFREEGLPGFWRGNVPALLMVMPYTAIQFAVLHKLKTFAAGSSKTEDHIHLSP 122

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGL 120
           YLSY+SGALAGC ATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDI  TRGFRGLYAGL
Sbjct: 123 YLSYISGALAGCTATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDITRTRGFRGLYAGL 182

Query: 121 SPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC 180
           SPTLVEI+PYAGLQFGTYDTFKRWTM WN  RSS TS    D++LSSFQLFVCGLAAGTC
Sbjct: 183 SPTLVEIVPYAGLQFGTYDTFKRWTMGWNHDRSSTTSFISTDDSLSSFQLFVCGLAAGTC 242

Query: 181 AKLVCHPLDVVKKRFQV 197
           AKLVCHPLDVVKKRFQ+
Sbjct: 243 AKLVCHPLDVVKKRFQI 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356529708|ref|XP_003533430.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|224107339|ref|XP_002314452.1| predicted protein [Populus trichocarpa] gi|222863492|gb|EEF00623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521873|ref|XP_003529575.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|225432282|ref|XP_002272682.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier [Vitis vinifera] gi|297736865|emb|CBI26066.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363814342|ref|NP_001242812.1| uncharacterized protein LOC100805353 [Glycine max] gi|255637169|gb|ACU18915.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255551717|ref|XP_002516904.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] gi|223543992|gb|EEF45518.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356556120|ref|XP_003546375.1| PREDICTED: mitochondrial thiamine pyrophosphate carrier-like [Glycine max] Back     alignment and taxonomy information
>gi|15239754|ref|NP_199708.1| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gi|10177187|dbj|BAB10321.1| mitochondrial carrier protein-like [Arabidopsis thaliana] gi|26449838|dbj|BAC42042.1| putative mitochondrial carrier protein [Arabidopsis thaliana] gi|30017309|gb|AAP12888.1| At5g48970 [Arabidopsis thaliana] gi|332008368|gb|AED95751.1| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297795621|ref|XP_002865695.1| mitochondrial substrate carrier family protein [Arabidopsis lyrata subsp. lyrata] gi|297311530|gb|EFH41954.1| mitochondrial substrate carrier family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2154374339 AT5G48970 [Arabidopsis thalian 1.0 0.581 0.817 8.9e-86
TAIR|locus:2089453335 AT3G21390 "AT3G21390" [Arabido 1.0 0.588 0.808 6.2e-85
MGI|MGI:1914533318 Slc25a19 "solute carrier famil 0.939 0.581 0.395 4.2e-31
RGD|1359554318 Slc25a19 "solute carrier famil 0.939 0.581 0.395 1.1e-30
UNIPROTKB|E1C309309 SLC25A19 "Uncharacterized prot 0.939 0.598 0.385 1.4e-30
UNIPROTKB|Q29RM1318 SLC25A19 "Mitochondrial thiami 0.939 0.581 0.380 2.3e-30
UNIPROTKB|E2RFK6318 SLC25A19 "Uncharacterized prot 0.939 0.581 0.395 1.3e-29
UNIPROTKB|C8C419318 SLC25A19 "Solute carrier famil 0.939 0.581 0.380 2.7e-29
UNIPROTKB|Q9HC21320 SLC25A19 "Mitochondrial thiami 0.939 0.578 0.385 4.4e-29
ZFIN|ZDB-GENE-050417-292313 slc25a19 "solute carrier famil 0.923 0.581 0.375 5e-28
TAIR|locus:2154374 AT5G48970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 161/197 (81%), Positives = 176/197 (89%)

Query:     1 MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
             M QATKDIFREEG  GFWRGNVPALLMVMPYT+IQFTVLHKLK+FA+GS+K E+HI+LS 
Sbjct:    72 MVQATKDIFREEGFRGFWRGNVPALLMVMPYTSIQFTVLHKLKSFASGSTKTEDHIHLSP 131

Query:    61 YLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGL 120
             YLS+VSGALAGCAAT+GSYPFDLLRTILASQGEPKVYPTMRSAFVDII +RG RGLY GL
Sbjct:   132 YLSFVSGALAGCAATLGSYPFDLLRTILASQGEPKVYPTMRSAFVDIIQSRGIRGLYNGL 191

Query:   121 SPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTC 180
             +PTLVEI+PYAGLQFGTYD FKRW MDWNR + S+      D NLSSFQLF+CGL AGT 
Sbjct:   192 TPTLVEIVPYAGLQFGTYDMFKRWMMDWNRYKLSSKIPINVDTNLSSFQLFICGLGAGTS 251

Query:   181 AKLVCHPLDVVKKRFQV 197
             AKLVCHPLDVVKKRFQ+
Sbjct:   252 AKLVCHPLDVVKKRFQI 268
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0006810 "transport" evidence=ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0030974 "thiamine pyrophosphate transport" evidence=IGI
GO:0090422 "thiamine pyrophosphate transporter activity" evidence=IGI
TAIR|locus:2089453 AT3G21390 "AT3G21390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1914533 Slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359554 Slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C309 SLC25A19 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RM1 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFK6 SLC25A19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C8C419 SLC25A19 "Solute carrier family 25 member 19" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HC21 SLC25A19 "Mitochondrial thiamine pyrophosphate carrier" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-292 slc25a19 "solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-22
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 7e-13
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-09
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 4e-06
PTZ00168 259 PTZ00168, PTZ00168, mitochondrial carrier protein; 0.001
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 86.2 bits (214), Expect = 2e-22
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 58  LSAYLSYVSGALAGCAATVGSYPFDLLRTIL--ASQGEPKVYPTMRSAFVDIISTRGFRG 115
           LS   S ++G +AG  A   +YP D+++T L  ++ G  + Y  +   F  I    G RG
Sbjct: 3   LSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRG 62

Query: 116 LYAGLSPTLVEIIPYAGLQFGTYDTFKRW 144
           LY GL P L+ + P A + FGTY+T K+ 
Sbjct: 63  LYKGLLPNLLRVAPAAAIYFGTYETLKKL 91

Length = 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0770353 consensus Predicted mitochondrial carrier protein 100.0
KOG0766297 consensus Predicted mitochondrial carrier protein 100.0
KOG0765333 consensus Predicted mitochondrial carrier protein 100.0
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.98
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.97
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 99.97
KOG0036463 consensus Predicted mitochondrial carrier protein 99.97
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 99.97
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 99.97
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.97
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.97
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.96
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 99.96
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 99.96
KOG0769308 consensus Predicted mitochondrial carrier protein 99.96
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 99.96
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 99.95
PTZ00168259 mitochondrial carrier protein; Provisional 99.95
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 99.95
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.95
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.94
KOG0765333 consensus Predicted mitochondrial carrier protein 99.93
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 99.93
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.93
KOG0766297 consensus Predicted mitochondrial carrier protein 99.93
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.92
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.91
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.91
KOG0769 308 consensus Predicted mitochondrial carrier protein 99.91
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 99.91
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.89
KOG0036463 consensus Predicted mitochondrial carrier protein 99.86
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.86
KOG0770 353 consensus Predicted mitochondrial carrier protein 99.86
KOG2745321 consensus Mitochondrial carrier protein [General f 99.85
KOG1519297 consensus Predicted mitochondrial carrier protein 99.85
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.77
KOG1519297 consensus Predicted mitochondrial carrier protein 99.52
KOG2954427 consensus Mitochondrial carrier protein [General f 99.08
KOG2745 321 consensus Mitochondrial carrier protein [General f 99.03
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 98.91
KOG2954 427 consensus Mitochondrial carrier protein [General f 98.29
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-45  Score=274.27  Aligned_cols=182  Identities=47%  Similarity=0.836  Sum_probs=163.4

Q ss_pred             hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216            2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF   81 (197)
Q Consensus         2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl   81 (197)
                      ++.+++|+++||++|||||..+++++.+|+.+++|..||.++++.......   ...++..++++|++||+++.+++||+
T Consensus        71 ~~~~~~I~~eEG~~g~wkGn~~~~~r~~pY~avqf~aye~~k~~~~~~~~~---~~~~~~~~l~aGalAG~~a~~~tyPL  147 (320)
T KOG0752|consen   71 IQAFKSIYREEGLRGFWKGNGPAQIRIIPYGAVQFSAYEQYKKLVLGVDPN---GSLSPLVRLVAGALAGMTATLATYPL  147 (320)
T ss_pred             HHHHHHHHHHhchhhhhcCcccceeeeeecchhhhhHHHHhhhhhhccCcc---cccchhHHHHHHHHHHHHHHHhcCcH
Confidence            678999999999999999999999999999999999999999864443221   26678899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHH-HhhhhhhccCCCCCCC
Q 029216           82 DLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRW-TMDWNRIRSSNTSSTG  160 (197)
Q Consensus        82 d~vk~r~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  160 (197)
                      |++|+|+..+++...|+++.+++++||++||++|||||+.|++++.+|+.++.|..||.+|++ +....           
T Consensus       148 DlvRtRLa~q~~~~~y~~l~~a~~~I~~~eGi~gfYrGl~ptllgi~Pyag~~F~~Yd~lk~~~~~~~~-----------  216 (320)
T KOG0752|consen  148 DLLRTRLAVQGELKVYRGLLHAFKTIYREEGIRGFYRGLGPTLLGIAPYAGINFFAYDTLKKWQYLKSS-----------  216 (320)
T ss_pred             HHhhhheeeecccccCCcHHHHHHHHHHhcchhhhhcCcchhhheehhhhhhHHHHHHHHHHhhccccc-----------
Confidence            999999999877668999999999999999999999999999999999999999999999996 22221           


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhhchHHHHHhhhcC
Q 029216          161 ADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV  197 (197)
Q Consensus       161 ~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvvk~rmQ~  197 (197)
                      .+++.+.+.+++||++||++++.+|||||+||+|||+
T Consensus       217 ~~~~~~~~~~l~~GalAG~~aqti~yPlD~vRrrmQ~  253 (320)
T KOG0752|consen  217 GNKELSNFERLLCGALAGAVAQTITYPLDTVRRRMQL  253 (320)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhhcccHHHHHHHHhc
Confidence            1145778899999999999999999999999999996

>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 3e-12
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 3e-08
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 8   IFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLS--YV 65
           I +E+G   FWRGN+  ++   P  A+ F    K K    G    + H     Y +    
Sbjct: 60  IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLA 117
Query: 66  SGALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGLYAGLS 121
           SG  AG  +    YP D  RT LA+        + +  + +    I  + G RGLY G +
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 122 PTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCA 181
            ++  II Y    FG YDT K    D                N+     ++        A
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQTVTAVA 223
Query: 182 KLVCHPLDVVKKR 194
            LV +P D V++R
Sbjct: 224 GLVSYPFDTVRRR 236
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-62
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-29
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 5e-21
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 6e-04
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 1e-34
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 7e-27
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 3e-21
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 3e-05
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  194 bits (495), Expect = 2e-62
 Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 18/201 (8%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           +      I +E+G   FWRGN+  ++   P  A+ F    K K    G            
Sbjct: 53  IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGL 116
             +  SG  AG  +    YP D  RT LA+        + +  + +    I  + G RGL
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172

Query: 117 YAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLA 176
           Y G + ++  II Y    FG YDT K    D                N+     ++    
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQT 218

Query: 177 AGTCAKLVCHPLDVVKKRFQV 197
               A LV +P D V++R  +
Sbjct: 219 VTAVAGLVSYPFDTVRRRMMM 239
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.97
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-42  Score=262.92  Aligned_cols=182  Identities=27%  Similarity=0.456  Sum_probs=157.5

Q ss_pred             hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216            2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF   81 (197)
Q Consensus         2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl   81 (197)
                      ++++++++++||++|||||+.+++++.++.++++|.+||.+++.+......+..........+++|++||+++.++++|+
T Consensus        54 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pl  133 (297)
T 1okc_A           54 IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL  133 (297)
T ss_dssp             HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            58899999999999999999999999999999999999999995433211111112345678999999999999999999


Q ss_pred             HHHHHHHHhcCC----CCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhhccCCCC
Q 029216           82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTS  157 (197)
Q Consensus        82 d~vk~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      |++|+|+|++..    ..+|+++++++++++++||++|||||+.+++++.+++++++|.+||.+|+.+.+.         
T Consensus       134 d~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---------  204 (297)
T 1okc_A          134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------  204 (297)
T ss_dssp             HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------
T ss_pred             HHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------
Confidence            999999999743    3568999999999999999999999999999999999999999999999966432         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHhhchHHHHHhhhcC
Q 029216          158 STGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV  197 (197)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvvk~rmQ~  197 (197)
                           .+.+....++++++||++++++++|+||||+|||+
T Consensus       205 -----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~  239 (297)
T 1okc_A          205 -----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM  239 (297)
T ss_dssp             -----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence                 12456678899999999999999999999999995
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 1e-09
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 2e-09
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 2e-08
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 3e-06
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 5e-06
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 1e-09
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 1   MFQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSA 60
           +      IF+ +GL G ++G   ++  ++ Y A  F V    K          +  N+  
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML------PDPKNVHI 208

Query: 61  YLSYVSGALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGL 116
            +S++        A + SYPFD +R  +  Q    G   +Y      +  I    G +  
Sbjct: 209 IVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAF 268

Query: 117 YAGLSPTLVEIIPYAGLQFGTYDT 140
           + G    ++  +         YD 
Sbjct: 269 FKGAWSNVLRGMG-GAFVLVLYDE 291
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.95
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=230.18  Aligned_cols=182  Identities=27%  Similarity=0.456  Sum_probs=162.9

Q ss_pred             hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216            2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF   81 (197)
Q Consensus         2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl   81 (197)
                      ++++++++++||+++||+|+.+.+++..++..++|.+|+.+++.+.................+++|.+|++++.++++|+
T Consensus        53 ~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~  132 (292)
T d1okca_          53 IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL  132 (292)
T ss_dssp             HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhh
Confidence            67899999999999999999999999999999999999999999987754444444556677889999999999999999


Q ss_pred             HHHHHHHHhcCC----CCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhhccCCCC
Q 029216           82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTS  157 (197)
Q Consensus        82 d~vk~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      |++|+|+|.+..    .+.+.+..+++++++++||+++||+|+.+++++.+++++++|..||.+|+.+.+.         
T Consensus       133 ~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~---------  203 (292)
T d1okca_         133 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------  203 (292)
T ss_dssp             HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------
T ss_pred             hhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccc---------
Confidence            999999999743    3568899999999999999999999999999999999999999999999876543         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHhhchHHHHHhhhcC
Q 029216          158 STGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV  197 (197)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvvk~rmQ~  197 (197)
                           ........++++.+++++++++++|+||||+|||+
T Consensus       204 -----~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~  238 (292)
T d1okca_         204 -----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM  238 (292)
T ss_dssp             -----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----cccchHHHHHHHHHHHHHHhhccccHHHHHHHHHh
Confidence                 34566778999999999999999999999999995
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure