Citrus Sinensis ID: 029226

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MQGGKRASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLLKLSETPEAPRQ
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcEEcccHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEccccHHHHHHHccHHHHcccccEEEEEccccccccHHHHcccEEEEEEEEEcccHHHHHHHHHHHccccccccccccccccccc
ccccccccccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHEEcHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEccccccHcHHHHHccHEEEEEEEcccccHHHHHHHHHccccccEEEccccccccccc
mqggkrasrklvhdvskppnsvpqesecyegESLVRLLKLIQREIVSArslhgdslpeklwfkqrfsiGVNEVTRVLERMapranmgispqqphilcgnskvpsVQLQVILLAADcsprwlikhlpglalsrnvpvifvkdkkggslrlgeLVKLKTAIAVGIKAKGNIINQLMDKILhgdevdllklsetpeaprq
mqggkrasrklvhdvskppnsvpqesecyeGESLVRLLKLIQREIVSArslhgdslpeklwfkqrfsIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLpglalsrnvPVIFVKdkkggslrlgelvKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLlklsetpeaprq
MQGGKRASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLLKLSETPEAPRQ
****************************YEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGIS*QQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLL***********
**************************ECYEGESLVRLLK********************LWFKQRFSIGVNEVTRVLERMA********************VPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLLKL**T******
****************************YEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLLKLSETPEAPRQ
*************************SECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERM**********************PSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLLKLSE*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGGKRASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDLLKLSETPEAPRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
224128149183 predicted protein [Populus trichocarpa] 0.842 0.907 0.639 2e-54
255548243205 ribonuclease P, putative [Ricinus commun 0.923 0.887 0.588 8e-52
359479989196 PREDICTED: uncharacterized protein LOC10 0.832 0.836 0.650 3e-51
255644985195 unknown [Glycine max] 0.791 0.8 0.579 1e-43
357520971176 hypothetical protein MTR_8g103280 [Medic 0.725 0.812 0.615 7e-41
15234319167 Ribosomal protein L7Ae/L30e/S12e/Gadd45 0.741 0.874 0.550 4e-39
297814145170 predicted protein [Arabidopsis lyrata su 0.756 0.876 0.531 5e-39
357121793200 PREDICTED: uncharacterized protein LOC10 0.680 0.67 0.507 1e-30
194695744186 unknown [Zea mays] gi|194697364|gb|ACF82 0.695 0.736 0.489 1e-30
194699336186 unknown [Zea mays] gi|238010046|gb|ACR36 0.700 0.741 0.492 2e-30
>gi|224128149|ref|XP_002320256.1| predicted protein [Populus trichocarpa] gi|222861029|gb|EEE98571.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 134/172 (77%), Gaps = 6/172 (3%)

Query: 18  PPNSVPQE----SECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEV 73
           P NSV QE    S  YEGE L RLLK I +EI S ++L G SLPEK WFKQ+F+IGVNEV
Sbjct: 8   PKNSVTQEKDSSSSYYEGERLARLLKSIHKEIESTKTLEGSSLPEKFWFKQQFAIGVNEV 67

Query: 74  TRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRN 133
           TRVLERM+P +  G S Q+ H +  N KVPSV LQ IL+A+DC+P+WL +HLP LA SR 
Sbjct: 68  TRVLERMSPVSESGSSLQRSHAI-NNHKVPSVHLQAILIASDCNPKWLTRHLPSLASSRK 126

Query: 134 VPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDEVDL 185
           VP+IFVKDK+GGSLRLGELVKLKTAIA+G+KA+GN IN+++  IL G+E +L
Sbjct: 127 VPLIFVKDKRGGSLRLGELVKLKTAIAIGVKARGNAINEIVG-ILCGNETNL 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548243|ref|XP_002515178.1| ribonuclease P, putative [Ricinus communis] gi|223545658|gb|EEF47162.1| ribonuclease P, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359479989|ref|XP_002273891.2| PREDICTED: uncharacterized protein LOC100255449 [Vitis vinifera] gi|297744086|emb|CBI37056.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255644985|gb|ACU22992.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357520971|ref|XP_003630774.1| hypothetical protein MTR_8g103280 [Medicago truncatula] gi|355524796|gb|AET05250.1| hypothetical protein MTR_8g103280 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15234319|ref|NP_192088.1| Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] gi|4558548|gb|AAD22641.1|AC007138_5 putative RNaseP-associated protein [Arabidopsis thaliana] gi|7268222|emb|CAB77749.1| putative RNaseP-associated protein [Arabidopsis thaliana] gi|89001035|gb|ABD59107.1| At4g01790 [Arabidopsis thaliana] gi|332656677|gb|AEE82077.1| Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814145|ref|XP_002874956.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320793|gb|EFH51215.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357121793|ref|XP_003562602.1| PREDICTED: uncharacterized protein LOC100824571 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|194695744|gb|ACF81956.1| unknown [Zea mays] gi|194697364|gb|ACF82766.1| unknown [Zea mays] gi|414887798|tpg|DAA63812.1| TPA: hypothetical protein ZEAMMB73_297716 [Zea mays] gi|414887799|tpg|DAA63813.1| TPA: hypothetical protein ZEAMMB73_297716 [Zea mays] Back     alignment and taxonomy information
>gi|194699336|gb|ACF83752.1| unknown [Zea mays] gi|238010046|gb|ACR36058.1| unknown [Zea mays] gi|414887801|tpg|DAA63815.1| TPA: ribonuclease P isoform 1 [Zea mays] gi|414887802|tpg|DAA63816.1| TPA: ribonuclease P isoform 2 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2133417167 AT4G01790 "AT4G01790" [Arabido 0.741 0.874 0.563 5.5e-38
UNIPROTKB|G4MRY0126 MGG_02467 "Ribonucleoprotein-a 0.385 0.603 0.304 0.00017
TAIR|locus:2133417 AT4G01790 "AT4G01790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 89/158 (56%), Positives = 113/158 (71%)

Query:    24 QESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPR 83
             +ES+ YEGE L  LL LIQR I +++  + +SLPEK+W K++ +IG+NEVTRVLERM P 
Sbjct:    21 KESDYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPN 80

Query:    84 ANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
                  S QQ      N K    QLQV++L ADC PR L KH+P LA SRNVPV++V+D K
Sbjct:    81 ---NTSDQQQ-----NPK----QLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNK 128

Query:   144 GGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGD 181
               SLRLGELVKLKTA+A+GIKA+GN +N L+ +IL  D
Sbjct:   129 RASLRLGELVKLKTALAIGIKARGNDLNLLLKQILPRD 166
GO:0004526 "ribonuclease P activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
UNIPROTKB|G4MRY0 MGG_02467 "Ribonucleoprotein-associated protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
COG1358116 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L3 3e-08
pfam0124895 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/ 2e-07
PRK04175122 PRK04175, rpl7ae, 50S ribosomal protein L7Ae; Vali 1e-04
TIGR03677117 TIGR03677, rpl7ae, 50S ribosomal protein L7Ae 0.002
>gnl|CDD|224277 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKA 165
           + +++++A D SP  L+KHLP L   +NVP ++V  KK     LG+ V  +    V I  
Sbjct: 43  KAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKK----ELGKAVGKEVRKVVAIVD 98

Query: 166 KGN 168
           KG 
Sbjct: 99  KGF 101

Length = 116
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Back     alignment and domain information
>gnl|CDD|179766 PRK04175, rpl7ae, 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>gnl|CDD|188367 TIGR03677, rpl7ae, 50S ribosomal protein L7Ae Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
PTZ00222263 60S ribosomal protein L7a; Provisional 99.89
PTZ00365266 60S ribosomal protein L7Ae-like; Provisional 99.87
KOG3387131 consensus 60S ribosomal protein 15.5kD/SNU13, NHP2 99.86
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 99.82
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 99.8
KOG3167153 consensus Box H/ACA snoRNP component, involved in 99.76
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 99.71
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 99.7
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 99.69
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 99.55
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 99.48
PRK0101899 50S ribosomal protein L30e; Reviewed 99.44
PRK0668382 hypothetical protein; Provisional 99.43
PRK07714100 hypothetical protein; Provisional 99.35
PF08228158 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR0 99.35
KOG3406134 consensus 40S ribosomal protein S12 [Translation, 99.23
PTZ00106108 60S ribosomal protein L30; Provisional 99.21
PRK0728398 hypothetical protein; Provisional 99.07
KOG3166209 consensus 60S ribosomal protein L7A [Translation, 98.88
PRK05583104 ribosomal protein L7Ae family protein; Provisional 98.83
PRK09190220 hypothetical protein; Provisional 98.51
COG1911100 RPL30 Ribosomal protein L30E [Translation, ribosom 97.73
PF15608100 PELOTA_1: PELOTA RNA binding domain 96.72
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 93.8
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 90.93
PRK04011411 peptide chain release factor 1; Provisional 87.31
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 85.44
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 84.31
>PTZ00222 60S ribosomal protein L7a; Provisional Back     alignment and domain information 
Probab=99.89  E-value=1.5e-22  Score=177.94  Aligned_cols=141  Identities=24%  Similarity=0.353  Sum_probs=117.0

Q ss_pred             hhhhhhhhccCCCCCCccccccccchhHHHHHHHHHH------------HHHHhhh-hcCCC-CC--chhhhcccccccH
Q 029226            7 ASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQR------------EIVSARS-LHGDS-LP--EKLWFKQRFSIGV   70 (197)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~ge~l~~ll~~i~~------------~ie~ak~-~~~~~-lp--~k~~~k~~l~iGV   70 (197)
                      .||++|++++|+||++.||+..++......|++++.+            ..+.|.. +.+.. .|  +++   -.++.|+
T Consensus        61 rqk~iL~~rlKvPp~inqF~~~ldk~~a~~lfkll~KYrPEtk~~kk~Rl~~~A~~~~~g~~~~~~~kkp---~~LvsG~  137 (263)
T PTZ00222         61 RKKRVLQRRLKVPPALNQFTKVLDRSSRNELLKLIKKYAPETRKARRDRLHKVAEEKKKDPKKTVSTKAP---LAVVTGL  137 (263)
T ss_pred             HHHHHHHHhcCCCchHhhhhhhhhHhhHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCC---CeeccCH
Confidence            4788999999999999999999999999999988752            2222221 22322 22  233   2599999


Q ss_pred             HHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhh
Q 029226           71 NEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLG  150 (197)
Q Consensus        71 NeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG  150 (197)
                      |+||++||++.                         +++||||.||+|.+++.|||.||++++|||++|.++.    +||
T Consensus       138 n~VtkaIekkK-------------------------AkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKa----eLG  188 (263)
T PTZ00222        138 QEVTRAIEKKQ-------------------------ARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMA----RLG  188 (263)
T ss_pred             HHHHHHHHcCC-------------------------ceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHH----HHH
Confidence            99999999999                         7999999999999999999999999999999999999    999


Q ss_pred             hhhCCceeEEEEEeecCcc----hHHHHHHHhc
Q 029226          151 ELVKLKTAIAVGIKAKGNI----INQLMDKILH  179 (197)
Q Consensus       151 ~a~Gikta~Aigik~~~~~----~nk~~~~il~  179 (197)
                      +++|.+++.+++|.+.+++    ++++++.|-.
T Consensus       189 ~AIGkKtravVAItD~g~ed~~~l~~lv~~~~~  221 (263)
T PTZ00222        189 DAIGRKTATCVAITDVNAEDEAALKNLIRSVNA  221 (263)
T ss_pred             HHHCCCCCeEEEEeeCCcccHHHHHHHHHHHHH
Confidence            9999999999999987763    7777766543

>PTZ00365 60S ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>KOG3387 consensus 60S ribosomal protein 15 Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification] Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs Back     alignment and domain information
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>PRK09190 hypothetical protein; Provisional Back     alignment and domain information
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF15608 PELOTA_1: PELOTA RNA binding domain Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
3jyw_G113 60S ribosomal protein L8(A); eukaryotic ribosome, 2e-09
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 3e-08
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 3e-08
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 3e-08
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 4e-08
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 5e-08
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 5e-08
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 1e-07
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 2e-07
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 8e-07
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 1e-06
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 7e-06
3izc_H256 60S ribosomal protein RPL8 (L7AE); eukaryotic ribo 8e-06
4a17_F255 RPL7A, 60S ribosomal protein L9; eukaryotic riboso 2e-04
3iz5_H258 60S ribosomal protein L7A (L7AE); eukaryotic ribos 2e-04
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Length = 113 Back     alignment and structure
 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 35/142 (24%)

Query: 36  RLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHI 95
           RL K                 P  + +      G+N V  ++E                 
Sbjct: 2   RLTKEAAAVAEGKSKQDASPKPYAVKY------GLNHVVALIENK--------------- 40

Query: 96  LCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKL 155
                     + +++L+A D  P  L+  LP L     VP   VK K     RLG LV  
Sbjct: 41  ----------KAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKA----RLGTLVNQ 86

Query: 156 KTAIAVGIKAKGNIINQLMDKI 177
           KT+    +          + K+
Sbjct: 87  KTSAVAALTEVRAEDEAALAKL 108
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Length = 120 Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Length = 120 Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Length = 119 Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Length = 122 Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Length = 124 Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Length = 82 Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Length = 134 Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Length = 135 Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Length = 144 Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Length = 121 Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Length = 126 Back     alignment and structure
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F Length = 255 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
4a17_F255 RPL7A, 60S ribosomal protein L9; eukaryotic riboso 99.92
3iz5_H258 60S ribosomal protein L7A (L7AE); eukaryotic ribos 99.91
2zkr_f266 60S ribosomal protein L7A; protein-RNA complex, 60 99.88
3izc_H256 60S ribosomal protein RPL8 (L7AE); eukaryotic ribo 99.87
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 99.82
3jyw_G113 60S ribosomal protein L8(A); eukaryotic ribosome, 99.79
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 99.79
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 99.79
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 99.78
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 99.78
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 99.76
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 99.76
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 99.76
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 99.76
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 99.73
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 99.69
2kg4_A165 Growth arrest and DNA-damage-inducible protein GA 99.69
3u5c_M143 40S ribosomal protein S12, 40S ribosomal protein S 99.66
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 99.6
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 99.59
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 99.58
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 99.57
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 99.56
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 99.55
1w41_A101 50S ribosomal protein L30E; electrostatic interact 99.55
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 99.54
3vi6_A125 60S ribosomal protein L30; three-layer alpha/beta/ 99.23
3cg6_A146 Growth arrest and DNA-damage-inducible 45 gamma; a 98.93
3ffm_A167 Growth arrest and DNA-damage-inducible protein GAD 98.8
3ir9_A166 Peptide chain release factor subunit 1; structural 91.85
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 88.82
3agk_A373 Peptide chain release factor subunit 1; translatio 81.89
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F Back     alignment and structure
Probab=99.92  E-value=3.3e-25  Score=193.07  Aligned_cols=140  Identities=26%  Similarity=0.391  Sum_probs=118.3

Q ss_pred             hhhhhhhhccCCCCCCccccccccchhHHHHHHHHHH------------HHHHh-hhhcCCCCCchhhhcccccccHHHH
Q 029226            7 ASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQR------------EIVSA-RSLHGDSLPEKLWFKQRFSIGVNEV   73 (197)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~ge~l~~ll~~i~~------------~ie~a-k~~~~~~lp~k~~~k~~l~iGVNeV   73 (197)
                      .||.|+|.++|+||++.||+..++.+..+.|++++++            .++.| +.+.+...|.|-.  ..+..|+|+|
T Consensus        55 rq~~il~~rlkvpp~inqf~~~ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p--~~lk~GvneV  132 (255)
T 4a17_F           55 RQKRVLLQRLKVPPQIHQFTKTLDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKP--IVLKYGLNHI  132 (255)
T ss_dssp             HHHHHHHHHSBCCHHHHGGGCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCC--CCEEECHHHH
T ss_pred             HHHHHHHhcccCCCcccccCCCCChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCC--ceeecchHHH
Confidence            4789999999999999999999999999999999863            23222 1244554454322  3688999999


Q ss_pred             HHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhh
Q 029226           74 TRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELV  153 (197)
Q Consensus        74 TKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~  153 (197)
                      |++||++.                         +++||||.||||.+++.|||.||+++||||++|+++.    +||++|
T Consensus       133 tKaIekgK-------------------------AqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~----~LG~av  183 (255)
T 4a17_F          133 TTLIENKQ-------------------------AKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKA----ALGKLV  183 (255)
T ss_dssp             HHHHHTSC-------------------------CSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHH----HHHHHH
T ss_pred             HHHHHcCC-------------------------ceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH----HHHHHh
Confidence            99999999                         7999999999999999999999999999999999999    999999


Q ss_pred             CCceeEEEEEeecCcc----hHHHHHHH
Q 029226          154 KLKTAIAVGIKAKGNI----INQLMDKI  177 (197)
Q Consensus       154 Gikta~Aigik~~~~~----~nk~~~~i  177 (197)
                      |.+++++++|...++.    ++++++.|
T Consensus       184 GrKt~s~Vaitdv~~EDk~al~kLve~i  211 (255)
T 4a17_F          184 NKKTATAVALTEVRNEDKAKLQQFSELF  211 (255)
T ss_dssp             TSSCCSEEEECCCCHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEeeccCHHHHHHHHHHHHHH
Confidence            9999999999876653    66677654
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens} Back     alignment and structure
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C Back     alignment and structure
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A Back     alignment and structure
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d1vqof1119 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeo 9e-08
d1xbia1115 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeo 1e-07
d1rlga_113 d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Arc 1e-07
d2alea1126 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein 6e-07
d2fc3a1124 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyr 1e-06
d2aifa1115 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Crypto 1e-06
d2ozba1125 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Hu 8e-06
d1t0kb_97 d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L3 0.004
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 46.8 bits (111), Expect = 9e-08
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKA 165
             +++ +A D  P  ++ H+P LA  + VP IFV+ +      LG    L+   A     
Sbjct: 44  SAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQD----DLGHAAGLEVGSAAAAVT 99

Query: 166 KGNIINQLMDKILHGDEVDLLK 187
                +  ++ I   D+V+ L+
Sbjct: 100 DAGEADADVEDIA--DKVEELR 119
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 113 Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Length = 126 Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Length = 124 Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Length = 115 Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d2alea1126 Small nuclear ribonucleoprotein-associated protein 99.85
d2ozba1125 Spliceosomal 15.5kd protein {Human (Homo sapiens) 99.84
d1xbia1115 Ribosomal protein L7ae {Archaeon Methanococcus jan 99.82
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 99.79
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 99.78
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 99.77
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 99.77
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 99.46
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 99.45
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 99.42
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 94.35
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 88.61
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 81.42
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 80.97
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 80.26
d1ipaa2105 RrmA (RrmH), N-terminal domain {Thermus thermophil 80.07
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Small nuclear ribonucleoprotein-associated protein 1, Snu13p
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.85  E-value=2.1e-21  Score=150.95  Aligned_cols=114  Identities=25%  Similarity=0.427  Sum_probs=90.1

Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCC
Q 029226           20 NSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGN   99 (197)
Q Consensus        20 ~~~~~~~~~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~   99 (197)
                      ...|+++|.-+.+.-..+++.+    ..|+. .           +++++|+|||+|+||++.                  
T Consensus         3 ~~~~~a~P~a~~~l~~~i~~ll----~~a~~-~-----------~~l~~G~~ev~K~i~~g~------------------   48 (126)
T d2alea1           3 APNPKAFPLADAALTQQILDVV----QQAAN-L-----------RQLKKGANEATKTLNRGI------------------   48 (126)
T ss_dssp             CCCTTCCSBCCHHHHHHHHHHH----HHHHH-T-----------TCEEESHHHHHHHHHHTC------------------
T ss_pred             CCCCccCCCCCHHHHHHHHHHH----HHHHH-c-----------CCcccCHHHHHHHHHcCC------------------
Confidence            4578888888876444455444    44441 2           369999999999999999                  


Q ss_pred             CCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCceeE-EEEEee-cCcchHHHHHHH
Q 029226          100 SKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAI-AVGIKA-KGNIINQLMDKI  177 (197)
Q Consensus       100 ~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikta~-Aigik~-~~~~~nk~~~~i  177 (197)
                             +++||||.||+|.++++|||.||++++|||+||+++.    +||++||+++.+ ++++.. ....+.+.++++
T Consensus        49 -------a~lVviA~D~~p~~~~~~l~~lc~~~~Ip~~~v~sk~----~LG~a~G~~~~~~~~~i~~~~~~~~~~~~~~i  117 (126)
T d2alea1          49 -------SEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRV----ALGRACGVSRPVIAASITTNDASAIKTQIYAV  117 (126)
T ss_dssp             -------EEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHH----HHHHHTTCSSCCSEEEEECCTTCTTHHHHHHH
T ss_pred             -------CeEEEEeCCCChHHHHHHHHHHHhccCCCEEEECchh----HHHHHhCCCCCeEEEEEeccchHHHHHHHHHH
Confidence                   8999999999999999999999999999999999999    999999998633 333433 345677777765


Q ss_pred             h
Q 029226          178 L  178 (197)
Q Consensus       178 l  178 (197)
                      -
T Consensus       118 ~  118 (126)
T d2alea1         118 K  118 (126)
T ss_dssp             H
T ss_pred             H
Confidence            3
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure