Citrus Sinensis ID: 029234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNPKTPGVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLLQK
Secondary Structure (PSIPRED)
cEEEEEHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEEEccccccccccHHHcccccccEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVLWEITLGTAYFLGLKRTYRLALRIKRrvispkrpriRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDrmkpsaqirgpperpphgpsmsmtnhgmkspnpktpgvqtsrnkesdrhlfssskniwpkppfstiammmrhprpagtiIQYRHlqtngsdmlslnynrngfdgvLRKDIMQWLLQK
Flexible Loop (DISEMBL)
MVLWEITLGTAYFLGLKRTYRLAlrikrrvispkrprirqfvHRRLRAVFDVALKFhkniqerdievgrnVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNPKTPGVQTSRNKESDrhlfssskniwpkpPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLLQK
Low Complexity Region (SEG)
MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNPKTPGVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLLQK
Disordered region (IsUnstruct)
*VLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDR**************************************************************STIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLL**
Disordered Region (DISOPRED)
MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDR***************************************************SSKNIWPKPPFSTIAMM**********IQYRHLQTNGSDMLS*NYNRNGFDGVLRKDIMQWLLQK
Disordered Region (DISEMBL)
MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNH*************************SSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLLQK
Disordered Region (DISPRO)
MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDRMKPS************************************************SKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLLQK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNPKTPGVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYNRNGFDGVLRKDIMQWLLQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
255555877	198	conserved hypothetical protein [Ricinus	0.989	0.984	0.651	3e-67
224071381	204	predicted protein [Populus trichocarpa]	0.989	0.955	0.661	4e-65
224138196	203	predicted protein [Populus trichocarpa]	0.989	0.960	0.635	2e-62
225427106	204	PREDICTED: uncharacterized protein LOC10	0.989	0.955	0.612	1e-60
15222623	202	uncharacterized protein [Arabidopsis tha	0.989	0.965	0.568	8e-58
297851668	201	hypothetical protein ARALYDRAFT_473416 [	0.984	0.965	0.568	2e-56
351724111	192	uncharacterized protein LOC100527045 [Gl	0.949	0.973	0.58	6e-55
388522575	191	unknown [Medicago truncatula]	0.959	0.989	0.593	1e-53
357485095	191	hypothetical protein MTR_5g029600 [Medic	0.959	0.989	0.593	1e-53
217071020	191	unknown [Medicago truncatula]	0.959	0.989	0.588	9e-53

>gi|255555877|ref|XP_002518974.1| conserved hypothetical protein [Ricinus communis] gi|223541961|gb|EEF43507.1| conserved hypothetical protein [Ricinus communis]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 153/198 (77%), Gaps = 3/198 (1%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTYRLALRI+RR++SP RP++R F+ RR RA FDVAL+ H+NI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALRIQRRLVSPNRPKVRNFLQRRTRAAFDVALRVHQNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNPKTPGVQT 120
           Q+RD+EVGRN+GNWILRWLDRMKPSAQIRG     P   ++ MT     S   KTPG   
Sbjct: 61  QQRDLEVGRNLGNWILRWLDRMKPSAQIRGTSPLKPPSSNVKMTKQTSSSSQLKTPGSIQ 120

Query: 121 SRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNY--N 178
           SRN++S RHLF+ S+N W K PF TIAM+MR PRPAGTI QYRHL   G +M S +Y   
Sbjct: 121 SRNQDSGRHLFTGSRNTWSK-PFPTIAMIMRPPRPAGTITQYRHLFIRGPEMASTSYIGG 179

Query: 179 RNGFDGVLRKDIMQWLLQ 196
             GF+GV+RKDIMQ++LQ
Sbjct: 180 ARGFEGVIRKDIMQYMLQ 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071381|ref|XP_002303432.1| predicted protein [Populus trichocarpa] gi|222840864|gb|EEE78411.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 156/204 (76%), Gaps = 9/204 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTYRLA+RI+RR+ISPK PRIRQFV RR RAVFDVALK H NI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLAVRIQRRLISPKYPRIRQFVQRRTRAVFDVALKVHLNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNP----KTP 116
           Q+RDIEVGR++GN ILRWLDRMKPSAQIRGPP   P   + S TN   +  N     K P
Sbjct: 61  QQRDIEVGRHLGNRILRWLDRMKPSAQIRGPPPVKPTNGASSNTNVTKQVTNNTSHLKAP 120

Query: 117 GV-QTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSL 175
            + QTSR++ESDRHLF+S++N+W K PF +IAMMMR  RPAGT  QYRHL     +M   
Sbjct: 121 SIGQTSRHQESDRHLFTSARNMWSK-PFPSIAMMMRPSRPAGTFTQYRHLSIQCPEMSRP 179

Query: 176 NYN---RNGFDGVLRKDIMQWLLQ 196
           NYN    +G+ GV RKDIMQ++LQ
Sbjct: 180 NYNIGGGSGYQGVFRKDIMQYILQ 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138196|ref|XP_002326542.1| predicted protein [Populus trichocarpa] gi|222833864|gb|EEE72341.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 153/203 (75%), Gaps = 8/203 (3%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKR Y+LA RI+ RVISPK PRIRQFV RR RA+FDVALK H N+
Sbjct: 1   MVLWEITLGTAYFLGLKRAYKLASRIQLRVISPKYPRIRQFVQRRTRAIFDVALKVHLNV 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGP-PERPPHGPS--MSMTNHGMKSPNPKTPG 117
           Q+RDIEVGRN+GN ILRWL +MKPSAQI GP PE+P +G S  M++TN    + + K  G
Sbjct: 61  QQRDIEVGRNLGNRILRWLHQMKPSAQIHGPSPEKPTNGASSNMNVTNQVTNTSHLKASG 120

Query: 118 V-QTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLN 176
           + QTSR +ES RHLF+S+++ W K PF +IAMMMR  RPAG   QYRHL   G +M   N
Sbjct: 121 IGQTSRCQESYRHLFTSARSTWSK-PFPSIAMMMRPSRPAGIFTQYRHLSIQGPEMSRPN 179

Query: 177 YN---RNGFDGVLRKDIMQWLLQ 196
           YN     GF GV RKD+MQ++LQ
Sbjct: 180 YNIGGGCGFQGVFRKDMMQYILQ 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427106|ref|XP_002277481.1| PREDICTED: uncharacterized protein LOC100260748 [Vitis vinifera] gi|297742039|emb|CBI33826.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/204 (61%), Positives = 146/204 (71%), Gaps = 9/204 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTY+L LRI+RR++ P  P+IR F+HRR RAVFDVALK H++I
Sbjct: 1   MVLWEITLGTAYFLGLKRTYKLILRIQRRLVGPNHPKIRHFLHRRTRAVFDVALKVHRSI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERP--PHGPSMSMTNHGMKSPNPKTPGV 118
           QERDIEVGRN+GN ILR LDRMKPSAQIRG  E+P      S SMT     + + KT G 
Sbjct: 61  QERDIEVGRNLGNRILRCLDRMKPSAQIRGSLEKPHLAGSTSSSMTKQASNAQHQKTQGA 120

Query: 119 QTSR------NKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDM 172
              +      + ES RHLFSSSK IW K PFS I MMMR P  AG   QYRH+   G ++
Sbjct: 121 TIQKSSFKGVDHESKRHLFSSSKYIWHK-PFSPITMMMRPPTSAGMTTQYRHMSFWGPEV 179

Query: 173 LSLNYNRNGFDGVLRKDIMQWLLQ 196
           L  +  R GF+GV+RKDIMQW+LQ
Sbjct: 180 LRSSCGRAGFEGVIRKDIMQWMLQ 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222623|ref|NP_174505.1| uncharacterized protein [Arabidopsis thaliana] gi|8920600|gb|AAF81322.1|AC007767_2 Contains similarity to an unknown protein At2g35480 gi|3608140 from Arabidopsis thaliana BAC T32F12 gb|AC005314. ESTs gb|AV557757 and gb|AV555222 come from this gene [Arabidopsis thaliana] gi|12597866|gb|AAG60175.1|AC084110_8 hypothetical protein [Arabidopsis thaliana] gi|44681340|gb|AAS47610.1| At1g32260 [Arabidopsis thaliana] gi|45773860|gb|AAS76734.1| At1g32260 [Arabidopsis thaliana] gi|332193336|gb|AEE31457.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 151/204 (74%), Gaps = 9/204 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MV WEITLGTAYFLGL+RTYRLAL+I+RR+++PK P+IRQF+HRR R +FDVA+  HKNI
Sbjct: 1   MVFWEITLGTAYFLGLRRTYRLALKIQRRLVTPKHPKIRQFLHRRTRKIFDVAISVHKNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHG----MKSPNPKTP 116
           QERDIEVGRN+GNWILRWLD+MKP+AQIR  PE  PH  + +M        +  P   T 
Sbjct: 61  QERDIEVGRNLGNWILRWLDKMKPAAQIRTRPEL-PHNSNSNMDKAKRLTELSRPKSHTN 119

Query: 117 GVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNG--SDMLS 174
             QT +N+ESDRHLF+S K+   K PF +++MM++ PRP GT  QYRH  + G  + ++ 
Sbjct: 120 TTQTPQNRESDRHLFTSLKHFRHK-PFPSVSMMIQPPRPNGTTTQYRHYYSGGLAASLIQ 178

Query: 175 LNY-NRNGFDGVLRKDIMQWLLQK 197
            +Y    GF+GV+RKDI+QW+ Q+
Sbjct: 179 PSYVTGGGFNGVVRKDILQWMAQR 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851668|ref|XP_002893715.1| hypothetical protein ARALYDRAFT_473416 [Arabidopsis lyrata subsp. lyrata] gi|297339557|gb|EFH69974.1| hypothetical protein ARALYDRAFT_473416 [Arabidopsis lyrata subsp. lyrata]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 146/204 (71%), Gaps = 10/204 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MV WEITLGTAYFLGL+RTYRLAL+I+RR++SPK P+IR F+HRR R +FDVA+  HKNI
Sbjct: 1   MVFWEITLGTAYFLGLRRTYRLALKIQRRIVSPKHPKIRHFLHRRTRKIFDVAISVHKNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPH-----GPSMSMTNHGMKSPNPKT 115
           QERDIEVGRN+GNWILRWLDRMKP+AQIR  PE P +     G +  +T   +  P   T
Sbjct: 61  QERDIEVGRNLGNWILRWLDRMKPAAQIRTRPELPHNSNSNMGKAKRLTE--LSQPKSHT 118

Query: 116 PGVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTN-GSDMLS 174
              QT +N+ES RHLFSS  +   K PF +++MM++ PRP GT  QYRH        ++ 
Sbjct: 119 NTTQTPQNRESGRHLFSSLNHFRHK-PFPSVSMMIQPPRPNGTTTQYRHYSGGLAGSLIQ 177

Query: 175 LNYNRNG-FDGVLRKDIMQWLLQK 197
            +Y   G FDGV+RKDI+QW+ Q+
Sbjct: 178 PSYVTGGRFDGVIRKDILQWIAQR 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724111|ref|NP_001237814.1| uncharacterized protein LOC100527045 [Glycine max] gi|255631436|gb|ACU16085.1| unknown [Glycine max]

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 143/200 (71%), Gaps = 13/200 (6%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTYRLALRI+ R +SPK P++RQF+HRR RAVFDVA+K H+NI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALRIQHRTVSPKYPKLRQFLHRRTRAVFDVAIKVHRNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHG----PSMSMTNHGMKSPNPKTP 116
           Q+RDIEVGRN GN+ILRWLDRMKPSAQIRGPP  P +G     S+        S N K  
Sbjct: 61  QDRDIEVGRNFGNFILRWLDRMKPSAQIRGPP--PSNGVTSRESVGKRLSAGSSSNQKPS 118

Query: 117 GVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLN 176
           G   +  ++SDRHL +SS+ +    PF T+A MMR P PAGT +  RH + +   ++  N
Sbjct: 119 G---TLRRDSDRHLSTSSRTM----PFPTVARMMRSPYPAGTTVHGRHFRASTPQIVGSN 171

Query: 177 YNRNGFDGVLRKDIMQWLLQ 196
              N  +GV+RKDIMQW++ 
Sbjct: 172 CRVNWSEGVIRKDIMQWMMH 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522575|gb|AFK49349.1| unknown [Medicago truncatula]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 8/197 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTY+LAL+I+R+V+SPK P+ RQF+HRR RAVFDVA+K H+NI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYKLALKIQRKVVSPKYPKTRQFLHRRTRAVFDVAIKVHRNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSM--SMTNHGMKSPNPKTPGV 118
           QERDIEVGRNVGN+ILR LDRMKPSAQIR     P  G S   + T H   + N K P  
Sbjct: 61  QERDIEVGRNVGNFILRCLDRMKPSAQIRSRSNLPSSGSSSKETTTKHATGTSNHKPPSH 120

Query: 119 QTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYN 178
                K+SDRH F+SSK      PF +I+ MM  P PAGT I  R+L T   +    NY 
Sbjct: 121 SGLFKKDSDRHFFTSSK------PFPSISRMMIPPNPAGTTIHGRNLSTYSPETFRQNYR 174

Query: 179 RNGFDGVLRKDIMQWLL 195
            N    V+RKDIMQW+L
Sbjct: 175 VNWSGSVIRKDIMQWML 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485095|ref|XP_003612835.1| hypothetical protein MTR_5g029600 [Medicago truncatula] gi|355514170|gb|AES95793.1| hypothetical protein MTR_5g029600 [Medicago truncatula]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 8/197 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTY+LAL+I+R+V+SPK P+ RQF+HRR RAVFDVA+K H+NI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYKLALKIQRKVVSPKYPKTRQFLHRRTRAVFDVAIKVHRNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSM--SMTNHGMKSPNPKTPGV 118
           QERDIEVGRNVGN+ILR LDRMKPSAQIR     P  G S   + T H   + N K P  
Sbjct: 61  QERDIEVGRNVGNFILRCLDRMKPSAQIRNRSNLPSSGSSSKETTTKHATGTSNHKPPSH 120

Query: 119 QTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYN 178
                K+SDRH F+SSK      PF +I+ MM  P PAGT I  R+L T   +    NY 
Sbjct: 121 SGLFKKDSDRHFFTSSK------PFPSISRMMIPPNPAGTTIHGRNLSTYSPETFRQNYR 174

Query: 179 RNGFDGVLRKDIMQWLL 195
            N    V+RKDIMQW+L
Sbjct: 175 VNWSGSVIRKDIMQWML 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071020|gb|ACJ83870.1| unknown [Medicago truncatula]

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 136/197 (69%), Gaps = 8/197 (4%)

Query: 1   MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
           MVLWEITLGTAYFLGLKRTY+LAL+I+R+V+SPK P+ RQF+HRR RAVFDVA+K H+NI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYKLALKIQRKVVSPKYPKTRQFLHRRTRAVFDVAIKVHRNI 60

Query: 61  QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSM--SMTNHGMKSPNPKTPGV 118
           QERDIEVGRNVGN+ILR LDRMKPSAQIR     P  G S   + T H   + N K P  
Sbjct: 61  QERDIEVGRNVGNFILRCLDRMKPSAQIRNRSNLPSSGSSSKETTTKHATGTSNHKPPSH 120

Query: 119 QTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYN 178
                K+SDRH F+ SK      PF +I+ MM  P PAGT I  R+L T   +    NY 
Sbjct: 121 SGLFKKDSDRHFFTLSK------PFPSISRMMIPPNPAGTTIHGRNLSTYSPETFRQNYR 174

Query: 179 RNGFDGVLRKDIMQWLL 195
            N    V+RKDIMQW+L
Sbjct: 175 VNWSRSVIRKDIMQWML 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2028321	202	AT1G32260 "AT1G32260" [Arabido	0.994	0.970	0.576	5.1e-58
TAIR|locus:2062384	195	AT2G35480 "AT2G35480" [Arabido	0.974	0.984	0.522	7.4e-50

TAIR|locus:2028321 AT1G32260 "AT1G32260" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 117/203 (57%), Positives = 151/203 (74%)

Query:     1 MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
             MV WEITLGTAYFLGL+RTYRLAL+I+RR+++PK P+IRQF+HRR R +FDVA+  HKNI
Sbjct:     1 MVFWEITLGTAYFLGLRRTYRLALKIQRRLVTPKHPKIRQFLHRRTRKIFDVAISVHKNI 60

Query:    61 QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPS-MSMTNHGMKSPNPK--TPG 117
             QERDIEVGRN+GNWILRWLD+MKP+AQIR  PE P +  S M       +   PK  T  
Sbjct:    61 QERDIEVGRNLGNWILRWLDKMKPAAQIRTRPELPHNSNSNMDKAKRLTELSRPKSHTNT 120

Query:   118 VQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNG--SDMLSL 175
              QT +N+ESDRHLF+S K+   KP F +++MM++ PRP GT  QYRH  + G  + ++  
Sbjct:   121 TQTPQNRESDRHLFTSLKHFRHKP-FPSVSMMIQPPRPNGTTTQYRHYYSGGLAASLIQP 179

Query:   176 NY-NRNGFDGVLRKDIMQWLLQK 197
             +Y    GF+GV+RKDI+QW+ Q+
Sbjct:   180 SYVTGGGFNGVVRKDILQWMAQR 202

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062384 AT2G35480 "AT2G35480" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 104/199 (52%), Positives = 139/199 (69%)

Query:     1 MVLWEITLGTAYFLGLKRTYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNI 60
             MVLWE+ LGTAYFLG++RTYRLAL+ +RR++SPK PRIR F+HRR   +FD+AL+ HKNI
Sbjct:     1 MVLWELALGTAYFLGIRRTYRLALKTQRRLVSPKHPRIRDFMHRRTYQIFDMALRVHKNI 60

Query:    61 QERDIEVGRNVGNWILRWLDRMKPSAQIRGPPERPPHGPSMSMTNHGMKSPNPKTPGV-- 118
             Q+RD+ +GRN+GNWILR LDRMKPSAQ+  P    P   S+      ++S   K P V  
Sbjct:    61 QQRDMVIGRNLGNWILRGLDRMKPSAQVLLPKNTEP---SIDKAKRVLQSTRLK-PHVNT 116

Query:   119 QTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQYRHLQTNGSDMLSLNYN 178
             QT +N+E DR+LF S +N   K P +++ MM++ PR  GT  QYR      S ++   Y 
Sbjct:   117 QTPQNREVDRNLFMSLRNFRSKYPIASM-MMIKPPRSTGTTTQYRPYSVGESSLIKPIYA 175

Query:   179 RNGFDGVLRKDIMQWLLQK 197
             R GF+ V+RKDI+QW++QK
Sbjct:   176 RGGFNSVIRKDILQWMVQK 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       197   0.00082  111 3  11 22  0.42    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  178 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.48u 0.11s 22.59t   Elapsed:  00:00:01
  Total cpu time:  22.48u 0.11s 22.59t   Elapsed:  00:00:01
  Start:  Fri May 10 11:34:59 2013   End:  Fri May 10 11:35:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.86

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.86  E-value=0.82  Score=26.44  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=8.1

Q ss_pred             hHHHHHHHhhhhccCCCChh
Q 029234           18 RTYRLALRIKRRVISPKRPR   37 (197)
Q Consensus        18 RtYrlalr~qrrlisp~~p~   37 (197)
                      .-|+-|+.+++++.+|+||.
T Consensus        23 ~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen   23 ELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHhcccccC
Confidence            45788999999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00