Citrus Sinensis ID: 029243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQVN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcccccHHHHHHHHHHHHHcccHHHHHccccccEcccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
maslrncgsfykygansfdgvsaLPLLLHMRGVISKSLYKKeaslfprkgskklISDRarfiiprssgssnsngsdssdqtetpfgytrkdvLLIGVGVTVIGYGLksglelfgvdplqagnVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQVN
Flexible Loop (DISEMBL)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLykkeaslfprkgskklisdrarfiiprssgssnsngsdssdQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEekrrlasgeqvn
Low Complexity Region (SEG)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRssgssnsngsdssdQTETPFGYTRKDvlligvgvtvigyglKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRleglteaelealieqveeeKRRLASGEQVN
Disordered region (IsUnstruct)
*****NCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASL***************************************FGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV**********************************
Disordered Region (DISOPRED)
*****N*GSFYKYGANSFDGVSALPLLLHMRGVI***************************************************GYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLT*************************
Disordered Region (DISEMBL)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRS****************TPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE*************
Disordered Region (DISPRO)
**SLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFP***********************************TPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLRNCGSFYKYGANSFDGVSALPLLLHMRGVISKSLYKKEASLFPRKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLxxxxxxxxxxxxxxxxxxxxxxxxxxxxN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
225456193	218	PREDICTED: uncharacterized protein LOC10	0.994	0.894	0.691	2e-53
297734347	210	unnamed protein product [Vitis vinifera]	0.994	0.928	0.691	2e-53
118488661	204	unknown [Populus trichocarpa]	0.943	0.906	0.639	3e-53
125528076	209	hypothetical protein OsI_04123 [Oryza sa	0.617	0.578	0.735	9e-48
115440557	209	Os01g0805200 [Oryza sativa Japonica Grou	0.617	0.578	0.735	1e-47
242059007	200	hypothetical protein SORBIDRAFT_03g03741	0.739	0.725	0.641	2e-47
18401689	190	uncharacterized protein [Arabidopsis tha	0.775	0.8	0.596	1e-44
21554118	190	unknown [Arabidopsis thaliana]	0.637	0.657	0.714	1e-44
297834704	190	hypothetical protein ARALYDRAFT_898147 [	0.637	0.657	0.714	2e-44
9294497	130	unnamed protein product [Arabidopsis tha	0.637	0.961	0.714	2e-44

>gi|225456193|ref|XP_002278927.1| PREDICTED: uncharacterized protein LOC100245848 [Vitis vinifera]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/211 (69%), Positives = 165/211 (78%), Gaps = 16/211 (7%)

Query: 1   MASLR----NCGSFYKYGANSFDGVSALPLLLH--------MRG-VISKSLYKKEASLFP 47
           MASL     NC  F + G+ S  GVSALPLL          MRG +IS+S Y KE S FP
Sbjct: 9   MASLPLKSPNCSIFCERGSISIMGVSALPLLQQRVRAVGGLMRGHIISQSAYTKETSTFP 68

Query: 48  RKGSKKLISDRARFIIPRSSGSSNSNG--SDSSDQTETPFGYTRKDVLLIGVGVTVIGYG 105
           RKGS  +I  +  F  PRSSGSSNS+G   DS++Q + PFGY RKDVLLIGVGVTV+G G
Sbjct: 69  RKGSNSMIPKKLVFT-PRSSGSSNSDGSKDDSTNQDKVPFGYNRKDVLLIGVGVTVLGIG 127

Query: 106 LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQK 165
           LKSGLE  GVDPLQAGNVV++++VLGLT+GW+STYIFRVSNKEMTYAQQLRDYE+KVMQK
Sbjct: 128 LKSGLEFVGVDPLQAGNVVQLVLVLGLTIGWISTYIFRVSNKEMTYAQQLRDYENKVMQK 187

Query: 166 RLEGLTEAELEALIEQVEEEKRRLASGEQVN 196
           RLEGLTEAELE L+EQVEEEKRRL SGEQVN
Sbjct: 188 RLEGLTEAELEVLLEQVEEEKRRLVSGEQVN 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734347|emb|CBI15594.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/211 (69%), Positives = 165/211 (78%), Gaps = 16/211 (7%)

Query: 1   MASLR----NCGSFYKYGANSFDGVSALPLLLH--------MRG-VISKSLYKKEASLFP 47
           MASL     NC  F + G+ S  GVSALPLL          MRG +IS+S Y KE S FP
Sbjct: 1   MASLPLKSPNCSIFCERGSISIMGVSALPLLQQRVRAVGGLMRGSIISQSAYTKETSTFP 60

Query: 48  RKGSKKLISDRARFIIPRSSGSSNSNG--SDSSDQTETPFGYTRKDVLLIGVGVTVIGYG 105
           RKGS  +I  +  F  PRSSGSSNS+G   DS++Q + PFGY RKDVLLIGVGVTV+G G
Sbjct: 61  RKGSNSMIPKKLVFT-PRSSGSSNSDGSKDDSTNQDKVPFGYNRKDVLLIGVGVTVLGIG 119

Query: 106 LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQK 165
           LKSGLE  GVDPLQAGNVV++++VLGLT+GW+STYIFRVSNKEMTYAQQLRDYE+KVMQK
Sbjct: 120 LKSGLEFVGVDPLQAGNVVQLVLVLGLTIGWISTYIFRVSNKEMTYAQQLRDYENKVMQK 179

Query: 166 RLEGLTEAELEALIEQVEEEKRRLASGEQVN 196
           RLEGLTEAELE L+EQVEEEKRRL SGEQVN
Sbjct: 180 RLEGLTEAELEVLLEQVEEEKRRLVSGEQVN 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488661|gb|ABK96142.1| unknown [Populus trichocarpa]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 155/197 (78%), Gaps = 12/197 (6%)

Query: 6   NCGSFYKYGANSFDGVSALPLL-----LHMRG-VISKSLYKKEASLFPRKGSKKLISDRA 59
           NC      GA SF G SALP +       MRG +I +SLY+KE   FPRKG   ++S + 
Sbjct: 14  NCSILRNNGATSFVGFSALPFMQLRAGAFMRGRLIPQSLYRKEKFCFPRKGLGSMMSKKV 73

Query: 60  RFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQ 119
            F    ++ SS+ +GS  SDQ +TPFGY RKDVLLIG+GVT++G GL+SGLE  GVDPLQ
Sbjct: 74  TF----TTRSSSEDGS--SDQGKTPFGYNRKDVLLIGLGVTLLGIGLESGLEYAGVDPLQ 127

Query: 120 AGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALI 179
           AGNVV++++VLGLT+GW+STYIFRVSNKEMTYAQQLRDYE+KVM+KRLEGL+EAELEAL+
Sbjct: 128 AGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYENKVMEKRLEGLSEAELEALL 187

Query: 180 EQVEEEKRRLASGEQVN 196
           E+VEEEKRR ASGE++N
Sbjct: 188 ERVEEEKRRQASGEKIN 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528076|gb|EAY76190.1| hypothetical protein OsI_04123 [Oryza sativa Indica Group]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 112/121 (92%)

Query: 69  SSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIV 128
           SS+S+ ++S+ + +TPFGYTRKDVLLIGVGVT++GYGLK GLEL GVDPLQAGN V++I+
Sbjct: 68  SSSSDETNSTTEEKTPFGYTRKDVLLIGVGVTLLGYGLKYGLELVGVDPLQAGNAVQLII 127

Query: 129 VLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 188
           VLG+T+GW+STY+FRV+NK+MTYAQQLRDYE +VM+KRLE LTEAEL+ L+EQVEEEK+R
Sbjct: 128 VLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVMEKRLESLTEAELQVLLEQVEEEKQR 187

Query: 189 L 189
           L
Sbjct: 188 L 188

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440557|ref|NP_001044558.1| Os01g0805200 [Oryza sativa Japonica Group] gi|20804576|dbj|BAB92268.1| unknown protein [Oryza sativa Japonica Group] gi|113534089|dbj|BAF06472.1| Os01g0805200 [Oryza sativa Japonica Group] gi|125572357|gb|EAZ13872.1| hypothetical protein OsJ_03796 [Oryza sativa Japonica Group]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 112/121 (92%)

Query: 69  SSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIV 128
           SS+S+ ++S+ + +TPFGYTRKDVLLIGVGVT++GYGLK GLEL GVDPLQAGN V++I+
Sbjct: 68  SSSSDETNSTTEEKTPFGYTRKDVLLIGVGVTLLGYGLKYGLELVGVDPLQAGNAVQLII 127

Query: 129 VLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 188
           VLG+T+GW+STY+FRV+NK+MTYAQQLRDYE +VM+KRLE LTEAEL+ L+EQVEEEK+R
Sbjct: 128 VLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVMEKRLESLTEAELQVLLEQVEEEKQR 187

Query: 189 L 189
           L
Sbjct: 188 L 188

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059007|ref|XP_002458649.1| hypothetical protein SORBIDRAFT_03g037410 [Sorghum bicolor] gi|241930624|gb|EES03769.1| hypothetical protein SORBIDRAFT_03g037410 [Sorghum bicolor]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 115/145 (79%)

Query: 45  LFPRKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYTRKDVLLIGVGVTVIGY 104
           L P  G  + +  R RF    S   S+++ S S  Q + PFGYTRKDVLLIG+GVT  G 
Sbjct: 41  LPPPNGLLRSVRQRRRFAARSSISESSTDDSQSPKQEKAPFGYTRKDVLLIGLGVTAFGV 100

Query: 105 GLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQ 164
           GLK GLEL GVDPLQAGNVV+++VVLG+T+GW+STY+FRV+NK+MTYA QLRDYE +VM+
Sbjct: 101 GLKYGLELLGVDPLQAGNVVQLLVVLGMTVGWISTYMFRVANKDMTYAHQLRDYEKQVME 160

Query: 165 KRLEGLTEAELEALIEQVEEEKRRL 189
           KRLE LTEAEL+AL+EQVEEEK+R+
Sbjct: 161 KRLESLTEAELQALLEQVEEEKQRM 185

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401689|ref|NP_566593.1| uncharacterized protein [Arabidopsis thaliana] gi|14517430|gb|AAK62605.1| AT3g17930/MEB5_15 [Arabidopsis thaliana] gi|20147323|gb|AAM10375.1| AT3g17930/MEB5_15 [Arabidopsis thaliana] gi|332642505|gb|AEE76026.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 116/161 (72%), Gaps = 9/161 (5%)

Query: 32  GVISKSLYKKEASLFP---RKGSKKLISDRARFIIPRSSGSSNSNGSDSSDQTETPFGYT 88
           G   K LY+ E         KG K+ +  R       SS S+ +    ++    TPFGYT
Sbjct: 35  GAAKKVLYRFEGHRLSSSVEKGEKQRMRCRV------SSNSTETEDDSATKTKTTPFGYT 88

Query: 89  RKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKE 148
           RKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN V++I+VLGLTLGW+STYIFRV NKE
Sbjct: 89  RKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNAVQLILVLGLTLGWISTYIFRVGNKE 148

Query: 149 MTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRL 189
           MTYAQQLRDYE +VMQKRLE L+EAELEAL+ QV+EEK ++
Sbjct: 149 MTYAQQLRDYESQVMQKRLESLSEAELEALMAQVDEEKTKV 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554118|gb|AAM63198.1| unknown [Arabidopsis thaliana]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 107/126 (84%), Gaps = 1/126 (0%)

Query: 65  RSSGSSNSNGSDSSDQTET-PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNV 123
           R S +S     DS+ +T+T PFGYTRKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN 
Sbjct: 64  RVSSNSTETEDDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNA 123

Query: 124 VEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183
           V++I+VLGLTLGW+STYIFRV NKEMTYAQQLRDYE +VMQKRLE L+EAELEAL+ QV+
Sbjct: 124 VQLILVLGLTLGWISTYIFRVGNKEMTYAQQLRDYESQVMQKRLESLSEAELEALMAQVD 183

Query: 184 EEKRRL 189
           EEK ++
Sbjct: 184 EEKTKV 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834704|ref|XP_002885234.1| hypothetical protein ARALYDRAFT_898147 [Arabidopsis lyrata subsp. lyrata] gi|297331074|gb|EFH61493.1| hypothetical protein ARALYDRAFT_898147 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 107/126 (84%), Gaps = 1/126 (0%)

Query: 65  RSSGSSNSNGSDSSDQTET-PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNV 123
           R S +S     DS+ +T+T PFGYTRKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN 
Sbjct: 64  RVSSNSTETEDDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNA 123

Query: 124 VEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183
           V++I+VLGLTLGW+STYIFRV NKEMTYAQQLRDYE +VMQKRLE L+EAELEAL+ QV+
Sbjct: 124 VQLILVLGLTLGWISTYIFRVGNKEMTYAQQLRDYESQVMQKRLESLSEAELEALMAQVD 183

Query: 184 EEKRRL 189
           EEK ++
Sbjct: 184 EEKTKV 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294497|dbj|BAB02716.1| unnamed protein product [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 107/126 (84%), Gaps = 1/126 (0%)

Query: 65  RSSGSSNSNGSDSSDQTET-PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNV 123
           R S +S     DS+ +T+T PFGYTRKDV+LIGVGVT +G GL+SGLE  GVDPLQAGN 
Sbjct: 4   RVSSNSTETEDDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNA 63

Query: 124 VEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 183
           V++I+VLGLTLGW+STYIFRV NKEMTYAQQLRDYE +VMQKRLE L+EAELEAL+ QV+
Sbjct: 64  VQLILVLGLTLGWISTYIFRVGNKEMTYAQQLRDYESQVMQKRLESLSEAELEALMAQVD 123

Query: 184 EEKRRL 189
           EEK ++
Sbjct: 124 EEKTKV 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2088540	190	DAC "AT3G17930" [Arabidopsis t	0.653	0.673	0.510	1.5e-26

TAIR|locus:2088540 DAC "AT3G17930" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 71/139 (51%), Positives = 81/139 (58%)

Query:    32 GVISKSLYKKEA---SLFPRKGSKKLISDRARFIIPRXXXXXXXXXXXXXXQTET-PFGY 87
             G   K LY+ E    S    KG K+    R R    R              +T+T PFGY
Sbjct:    35 GAAKKVLYRFEGHRLSSSVEKGEKQ----RMRC---RVSSNSTETEDDSATKTKTTPFGY 87

Query:    88 TRKDXXXXXXXXXXXXXXXKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK 147
             TRKD               +SGLE  GVDPLQAGN V++I+VLGLTLGW+STYIFRV NK
Sbjct:    88 TRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNAVQLILVLGLTLGWISTYIFRVGNK 147

Query:   148 EMTYAQQLRDYEDKVMQKR 166
             EMTYAQQLRDYE +VMQKR
Sbjct:   148 EMTYAQQLRDYESQVMQKR 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       148   0.00068  104 3  11 22  0.45    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  121 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.90u 0.12s 11.02t   Elapsed:  00:00:01
  Total cpu time:  10.90u 0.12s 11.02t   Elapsed:  00:00:01
  Start:  Fri May 10 12:02:35 2013   End:  Fri May 10 12:02:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.592
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.588
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.587
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•					0.586
	gw1.70.142.1	hypothetical protein (191 aa)			•	•					0.565
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.564
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.558
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.552
	gw1.IV.4064.1	hypothetical protein (225 aa)			•	•					0.551
	gw1.123.192.1	SubName- Full=Putative uncharacterized protein; (218 aa)			•	•					0.549

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam11460	104	pfam11460, DUF3007, Protein of unknown function (D	9e-38

>gnl|CDD|221117 pfam11460, DUF3007, Protein of unknown function (DUF3007)

 Score =  125 bits (317), Expect = 9e-38
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 8/105 (7%)

Query: 87  YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSN 146
            TR DVLLIG+GV ++G     GL+  G+D L AG   + ++VLG+ +GW  +Y+FRV  
Sbjct: 1   MTRIDVLLIGLGVFLLGGLGYGGLQAAGLDGLSAGIASQALLVLGV-VGWTGSYLFRVVT 59

Query: 147 KEMTYAQQLRDYEDKV-------MQKRLEGLTEAELEALIEQVEE 184
            +MTY QQ RDY +         +QKR + L+  ELEAL  ++EE
Sbjct: 60  GKMTYMQQRRDYREAYDALTNEELQKRFDSLSPEELEALQAELEE 104

This is a family of uncharacterized proteins found in bacteria and eukaryotes. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF11460	104	DUF3007: Protein of unknown function (DUF3007); In	100.0
PF14163	151	SieB: Superinfection exclusion protein B	94.75
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.92
PF12576	141	DUF3754: Protein of unknown function (DUF3754); In	89.16
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	86.54
PF06518	93	DUF1104: Protein of unknown function (DUF1104); In	86.27
PF03250	147	Tropomodulin: Tropomodulin; InterPro: IPR004934 Ac	85.91
PF08621	49	RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR0139	83.69
PF04120	132	Iron_permease: Low affinity iron permease ; InterP	82.49

>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=100.00  E-value=1.8e-51  Score=318.75  Aligned_cols=97  Identities=55%  Similarity=0.856  Sum_probs=95.5

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHH----
Q 029243           87 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV----  162 (196)
Q Consensus        87 MtR~DVI~IGlgvfllGg~ly~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~av----  162 (196)
                      |||+|||+||+++|++|+++|++|+++|+|+++||||||++||+|+ |+|++||+|||+||+|||||||||||+++    
T Consensus         1 MtR~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~gl-vgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~   79 (104)
T PF11460_consen    1 MTRIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGL-VGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLT   79 (104)
T ss_pred             CcccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHH-HHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999986 99999999999999999999999999999    


Q ss_pred             ---HHHHHhcCCHHHHHHHHHHHHH
Q 029243          163 ---MQKRLEGLTEAELEALIEQVEE  184 (196)
Q Consensus       163 ---LQKRleeLtpEEle~L~aEIE~  184 (196)
                         ||||||||||||+|+||+||||
T Consensus        80 ~~~lqkRle~l~~eE~~~L~~eiee  104 (104)
T PF11460_consen   80 NEELQKRLEELSPEELEALQAEIEE  104 (104)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHhcC
Confidence               9999999999999999999985

>PF14163 SieB: Superinfection exclusion protein B

Probab=94.75  E-value=0.079  Score=41.75  Aligned_cols=74  Identities=20%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             hhHHhCCCcc--cchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 029243          109 GLELFGVDPL--QAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE  185 (196)
Q Consensus       109 gLq~~GlD~~--~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E  185 (196)
                      .++.+|+|.+  .-+.|.-.++++  +++.+.+.++...-+.-... +.+.-+.+.++|+++.|||+|++-|-+=+.+.
T Consensus        19 ~~~~l~l~~~~~~y~~~i~~~fl~--s~s~li~~~~~~~~~~~~~~-~~~k~~~~~~~~~l~~Lt~~EkavL~~~~~~~   94 (151)
T PF14163_consen   19 LLEWLNLDKFEIKYQPWIGLIFLF--SVSYLIAQLLSFIYKEAKDR-YQRKRKKKKIEKKLNSLTPEEKAVLREFYIQG   94 (151)
T ss_pred             HHHHhCcchHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHCC
Confidence            3678888874  455666666665  34555555544442222222 33333466788889999999999887766654

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.92  E-value=0.12  Score=41.22  Aligned_cols=75  Identities=20%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             HhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Q 029243          108 SGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDY-----EDKVMQKRLEGLTEAELEALIEQV  182 (196)
Q Consensus       108 ~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdY-----E~avLQKRleeLtpEEle~L~aEI  182 (196)
                      ..+-..|+-+.-++...=+++.+|+++.=.+.|.+-.-...=.+..+.-+.     +....++++.+++ +|++.+++.+
T Consensus        26 Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~-~el~~l~~~~  104 (191)
T PF04156_consen   26 LVLFISGLGALISFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQ-EELDQLQERI  104 (191)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHH-HHHHHHHHHH
Confidence            344444555555555555555555533333333333322223333333333     4455555665554 4555554444


Q ss_pred             H
Q 029243          183 E  183 (196)
Q Consensus       183 E  183 (196)
                      .
T Consensus       105 ~  105 (191)
T PF04156_consen  105 Q  105 (191)
T ss_pred             H
Confidence            3

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length

Probab=89.16  E-value=0.36  Score=38.50  Aligned_cols=70  Identities=17%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhHHhCCCc-ccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHH
Q 029243           85 FGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDP-LQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV  162 (196)
Q Consensus        85 fgMtR~DVI~IGlgvfllGg~ly~gLq~~GlD~-~~AGiwsQ~lLVlGlvvgWv~SYlfRV~tk~MTY~qQ~kdYE~av  162 (196)
                      =.||-.|-+.+++.+.+.|+...+-+.....+. .....+.-+.+     ++=+++|.+|+.+   +|.+++.+|...+
T Consensus        57 v~~~~~D~~~l~~~~vvg~v~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~r~~~---~~~~~~~ry~~~l  127 (141)
T PF12576_consen   57 VRMRPFDRVKLGVSAVVGGVAVFVKLVGMSLLLLSDIFLILILSL-----LSALGGYAFRQYT---GYKNNRARYQLLL  127 (141)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            478899999888877555544333322222111 11122222222     3334688999985   8999999998543

There is a single completely conserved residue P that may be functionally important.

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=86.54  E-value=0.62  Score=31.74  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=15.8

Q ss_pred             ccchhHHHHHHHhhhhhheeeeeee
Q 029243          118 LQAGNVVEVIVVLGLTLGWVSTYIF  142 (196)
Q Consensus       118 ~~AGiwsQ~lLVlGlvvgWv~SYlf  142 (196)
                      ...+++.=+.+++|+++||+.+...
T Consensus        18 ~pl~l~il~~f~~G~llg~l~~~~~   42 (68)
T PF06305_consen   18 LPLGLLILIAFLLGALLGWLLSLPS   42 (68)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556677788888876643

>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori

Probab=86.27  E-value=1.5  Score=33.78  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             CCccHHHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 029243          147 KEMTYAQQLRDYE---DKVMQKRLEGLTEAELEALIEQVEEEKR  187 (196)
Q Consensus       147 k~MTY~qQ~kdYE---~avLQKRleeLtpEEle~L~aEIE~Ek~  187 (196)
                      +.|++-++ ++|.   .+.++|.++.||++|-.+.+++|-.+=+
T Consensus        35 ~~m~~~~~-k~f~~~~~~~~~kn~~~ms~~e~~k~~~ev~k~~~   77 (93)
T PF06518_consen   35 KKMKEKEA-KDFKKQFKEAARKNLSKMSVEERKKRREEVRKALE   77 (93)
T ss_dssp             HHS-HHHH-HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            45776544 4665   7789999999999999999999977433

; PDB: 2XRH_A.

>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end

Probab=85.91  E-value=0.63  Score=38.95  Aligned_cols=36  Identities=36%  Similarity=0.562  Sum_probs=31.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243          149 MTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE  184 (196)
Q Consensus       149 MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~  184 (196)
                      |.|.+-+..|++--...=|..|||||++.|..|+++
T Consensus         3 ~~~~kel~~y~DiDeDelL~~LS~EEL~~L~~el~e   38 (147)
T PF03250_consen    3 LSYRKELEKYEDIDEDELLAKLSPEELEELENELEE   38 (147)
T ss_pred             chhhhhhhhcccCCHHHHHHhCCHHHHHHHHHHHHh
Confidence            457788889998888888999999999999988876

To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton

>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []

Probab=83.69  E-value=1.5  Score=30.37  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 029243          163 MQKRLEGLTEAELEALIEQVEE  184 (196)
Q Consensus       163 LQKRleeLtpEEle~L~aEIE~  184 (196)
                      =.+||..|||||.++-++||-+
T Consensus         8 N~~rL~~MS~eEI~~er~eL~~   29 (49)
T PF08621_consen    8 NEARLASMSPEEIEEEREELLE   29 (49)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHH
Confidence            3689999999999999999865

This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.

>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []

Probab=82.49  E-value=7.9  Score=31.55  Aligned_cols=48  Identities=23%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             eeecCCccHHHHHHHHHHHHHH---H---HHhcCCHHHHHHHHHHHHHHHhccc
Q 029243          143 RVSNKEMTYAQQLRDYEDKVMQ---K---RLEGLTEAELEALIEQVEEEKRRLA  190 (196)
Q Consensus       143 RV~tk~MTY~qQ~kdYE~avLQ---K---RleeLtpEEle~L~aEIE~Ek~~~~  190 (196)
                      ..-+++..+++.+.|-=-..+.   .   -+|.|+|+|++++.++.|++..+..
T Consensus        62 n~q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~~~  115 (132)
T PF04120_consen   62 NTQNRDTKALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQAR  115 (132)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhh
Confidence            3445666666555554433332   1   1588999999999999998655443

Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
1sf9_A	128	YFHH hypothetical protein; structural genomics, un	90.14
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	88.61
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	83.64

>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1

Probab=90.14  E-value=0.21  Score=39.91  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCC
Q 029243          159 EDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQ  194 (196)
Q Consensus       159 E~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~~  194 (196)
                      ....|+||+.+||++||+.-.+.+.++...+.+...
T Consensus        21 ~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~Gi   56 (128)
T 1sf9_A           21 QSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGI   56 (128)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            355689999999999999888888776655544433

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=88.61  E-value=1.4  Score=32.63  Aligned_cols=39  Identities=23%  Similarity=0.143  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 029243          153 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLAS  191 (196)
Q Consensus       153 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~  191 (196)
                      +++++......++...++-.++.++|.+++++.+++..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~le~~~~~  136 (139)
T 3eff_K           98 QERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDD  136 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444445556656556666778888888875554443

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=83.64  E-value=2.8  Score=29.49  Aligned_cols=100  Identities=14%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 029243           83 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL  155 (196)
Q Consensus        83 ~pfgMtR~DVI~IGlgvfllGg~ly-~gLq~~GlD~~~AGiwsQ~lLVlGlvvgWv~------SYlfRV~tk~MTY~qQ~  155 (196)
                      .++|++..+...+-...-- |+.-. -.-..+|++...+.....-+.=-|+ |-..-      .+.++.--+-..+.++.
T Consensus        31 ~~~~lt~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Gl-v~r~~~~~D~R~~~~~LT~~G~~~~~~~  108 (143)
T 3oop_A           31 ASYDVTPEQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKEL-IVREISTEDRRISLLSLTDKGRKETTEL  108 (143)
T ss_dssp             TTSSSCHHHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred             hhCCCCHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCC-eeccCCCccCceeeeeECHHHHHHHHHH
Confidence            4678877776554433211 32222 2245788887776666666655554 21111      22333444445677778


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029243          156 RDYEDKVMQKRLEGLTEAELEALIEQVEE  184 (196)
Q Consensus       156 kdYE~avLQKRleeLtpEEle~L~aEIE~  184 (196)
                      ....++..++-++.|++||++.+.+-++.
T Consensus       109 ~~~~~~~~~~~~~~l~~~e~~~l~~~L~~  137 (143)
T 3oop_A          109 RDIVEASCEKMFAGVTRTDLEQFTAILKN  137 (143)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            88888899999999999999999887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1sf9a_	118	Hypothetical protein YfhH {Bacillus subtilis [TaxI	90.2
d2fgea3	268	Presequence protease 1, PREP1 {Thale cress (Arabid	88.99

>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Hypothetical protein YfhH
family: Hypothetical protein YfhH
domain: Hypothetical protein YfhH
species: Bacillus subtilis [TaxId: 1423]

Probab=90.20  E-value=0.099  Score=39.46  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCC
Q 029243          158 YEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQ  194 (196)
Q Consensus       158 YE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~~  194 (196)
                      +..-.|+||+.+||+.||+.-.+.+.+....+.+..+
T Consensus        10 ~~~~~m~krySeMs~~EL~~EIa~L~EKaRKAEq~Gi   46 (118)
T d1sf9a_          10 FQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGI   46 (118)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eecchhhHHHHhcCHHHHHHHHHHHHHHHHHHHHccC
Confidence            3466899999999999999888888775555444433

>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.99  E-value=0.34  Score=37.92  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             eeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029243          141 IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK  186 (196)
Q Consensus       141 lfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek  186 (196)
                      +.=++.=+..|.+|+++-+++.|+++-+.|++|++++|.++.++-+
T Consensus       206 v~v~~~Ps~~~~~~~~~eek~~L~~~~~~l~~e~~~~l~~~~~~l~  251 (268)
T d2fgea3         206 VTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELK  251 (268)
T ss_dssp             EEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4444556789999999999999999999999999999988887733