Citrus Sinensis ID: 029281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPRKRGFEPHISYIYSRDFDN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEcccccEEEEEEEEcEEcccccccccccccEEEEEEccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHccccEEEEEccccccccccccccccHHcccccEEEccccccEEccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mekqnnyvvngglklpigyrfrptdEELVVHYLKRKvfglplpasiipeldvfqshplglpgdmkekKRYFFSnirnesaidndgkckiaagsgywkpvgknrqilASGTKQVVGIRKTLIfcegkrghetKTQWVMHQYHLVAIAtntnltqpvspffFFWENLCDHiviksrlyprkrgfephisyiysrdfdn
Flexible Loop (DISEMBL)
mekqnnyvvngglklpigyrfRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIrnesaidndgkCKIAAGSGYWKPVGKNRQIlasgtkqvvgIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKsrlyprkrgfephisyiysrdfdn
Low Complexity Region (SEG)
MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPRKRGFEPHISYIYSRDFDN
Disordered region (IsUnstruct)
******YVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPRKRGFEPHISYIYS*****
Disordered Region (DISOPRED)
****************IGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAI****************WENLCDHIVIKSRLY********************
Disordered Region (DISEMBL)
MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPRKRGFEPHISYIYSRDFDN
Disordered Region (DISPRO)
************LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAI*******************LCDHIVIKSRLYPRK*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPRKRGFEPHISYIYSRDFDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
A0SPJ3	405	NAC transcription factor	N/A	no	0.724	0.350	0.423	3e-27
A2YMR0	425	NAC transcription factor	N/A	no	0.719	0.331	0.424	1e-26
Q8H4S4	425	NAC transcription factor	yes	no	0.719	0.331	0.418	2e-26
A0SPJ6	396	NAC transcription factor	N/A	no	0.709	0.351	0.430	3e-26
A0SPJ8	406	NAC transcription factor	N/A	no	0.709	0.342	0.448	1e-25
A0SPJ9	402	NAC transcription factor	N/A	no	0.709	0.345	0.423	1e-25
A0SPJ4	405	NAC transcription factor	N/A	no	0.698	0.338	0.431	2e-25
D2SMN4	406	NAC transcription factor	N/A	no	0.709	0.342	0.442	2e-25
Q52QH4	318	NAC domain-containing pro	no	no	0.658	0.405	0.443	1e-24
Q53NF7	329	NAC domain-containing pro	no	no	0.673	0.401	0.417	3e-23

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 92/151 (60%), Gaps = 9/151 (5%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K   +PLP +II E+D+++  P  LP      E++ YF
Sbjct: 32  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 91

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-----KQVVGIRKTLIFCEGK 126
           FS    +    N  +   AA SGYWK  G ++ ILASGT     ++ +G++K L+F  GK
Sbjct: 92  FSP--RDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGK 149

Query: 127 RGHETKTQWVMHQYHLVAIATNTNLTQPVSP 157
                KT W+MH+Y L  ++ +T  ++P  P
Sbjct: 150 PPKGLKTNWIMHEYRLTDVSGSTTTSRPPPP 180

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).
Triticum durum (taxid: 4567)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 12/153 (7%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K   +PLP +II E+D+++  P  LP   +  E++ YF
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYF 87

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASG-TKQVVGIRKTLIFCEGKRGHE 130
           FS    +    N  +   AA SGYWK  G ++ I+ASG T++ VG++K L+F  GK    
Sbjct: 88  FSP--RDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKG 145

Query: 131 TKTQWVMHQYHL-------VAIATNTNLTQPVS 156
            KT W+MH+Y L        A+AT      P++
Sbjct: 146 VKTNWIMHEYRLTDTSSSAAAVATTRQPPPPIT 178

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 92/153 (60%), Gaps = 12/153 (7%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K   +PLP +II E+D+++  P  LP   +  E++ YF
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYF 87

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASG-TKQVVGIRKTLIFCEGKRGHE 130
           FS    +    N  +   AA SGYWK  G ++ I++SG T++ VG++K L+F  GK    
Sbjct: 88  FSP--RDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKG 145

Query: 131 TKTQWVMHQYHL-------VAIATNTNLTQPVS 156
            KT W+MH+Y L        A+AT      P++
Sbjct: 146 VKTNWIMHEYRLTDTSSSAAAVATTRRPPPPIT 178

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 5/144 (3%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K   +PLP +II E+D+++  P  LP      E++ YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-KQVVGIRKTLIFCEGKRGHE 130
           FS    +    N  +   AA SGYWK  G ++ ILASG  ++ VG++K L+F  GK    
Sbjct: 87  FS--PRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKG 144

Query: 131 TKTQWVMHQYHLVAIATNTNLTQP 154
            KT W+MH+Y L   +++   ++P
Sbjct: 145 LKTNWIMHEYRLTDASSSATTSRP 168

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 89/147 (60%), Gaps = 8/147 (5%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K    PLP +II E+D+++  P  LP      E + YF
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT---KQVVGIRKTLIFCEGKRG 128
           FS    + A  N  +   AA SGYWK  G ++ ILAS T   ++ VG++K L+F  GK  
Sbjct: 94  FSPRDRKYA--NGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPP 151

Query: 129 HETKTQWVMHQYHLV-AIATNTNLTQP 154
              KT W+MH+Y L  A A +T  ++P
Sbjct: 152 RGLKTNWIMHEYRLTGASAGSTTTSRP 178

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 5/144 (3%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K   +PLP +II E+D+++  P  LP      E++ YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-KQVVGIRKTLIFCEGKRGHE 130
           FS    +    N  +   AA SGYWK  G ++ ILASG  ++ VG++  L+F  GK    
Sbjct: 87  FS--PRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKG 144

Query: 131 TKTQWVMHQYHLVAIATNTNLTQP 154
            KT W+MH+Y L   +++   ++P
Sbjct: 145 LKTNWIMHEYRLTDASSSAATSRP 168

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 88/146 (60%), Gaps = 9/146 (6%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K    PLP +II E+D+++  P  LP    + E++ YF
Sbjct: 33  ELPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYF 92

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-----KQVVGIRKTLIFCEGK 126
           FS    +    N  +   AA SGYWK  G ++ ILASGT     ++ +G++K L+F  GK
Sbjct: 93  FS--PRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGK 150

Query: 127 RGHETKTQWVMHQYHLVAIATNTNLT 152
                KT W+MH+Y L   + +T  T
Sbjct: 151 PPKGLKTNWIMHEYRLTDASGSTTAT 176

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 88/147 (59%), Gaps = 8/147 (5%)

Query: 14  KLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRYF 71
           +LP G+RF PTDEELVVHYLK+K    PLP +II E+D+++  P  LP      E + YF
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 72  FSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT---KQVVGIRKTLIFCEGKRG 128
           FS    +    N  +   AA SGYWK  G ++ ILAS T   ++ VG++K L+F  GK  
Sbjct: 94  FS--PRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPP 151

Query: 129 HETKTQWVMHQYHLV-AIATNTNLTQP 154
              KT W+MH+Y L  A A +T  ++P
Sbjct: 152 RGLKTNWIMHEYRLTGASAGSTTTSRP 178

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 77/133 (57%), Gaps = 4/133 (3%)

Query: 13  LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRY 70
           L LP G+RF PTDEELVVHYL RKV   PLP  II E+D+++  P  LP       K+ Y
Sbjct: 19  LNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWY 78

Query: 71  FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
           FF+    +    N  +   AAG GYWK  G ++ +   G+ + VGI+K L+F  GK    
Sbjct: 79  FFTP--RDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRG 136

Query: 131 TKTQWVMHQYHLV 143
            KT W+MH+Y L 
Sbjct: 137 VKTDWIMHEYRLA 149

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53NF7|NAC71_ORYSJ NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 7/139 (5%)

Query: 9   VNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDM--KE 66
             G L+LP G+RF PTD+ELV++YL RK  GLPL A +I E+D+++ +P  LP      E
Sbjct: 3   CGGALQLPPGFRFHPTDDELVMYYLCRKCGGLPLAAPVIAEVDLYKFNPWDLPERAMGGE 62

Query: 67  KKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGK 126
           K+ YFFS    +    N  +   AAG+GYWK  G ++ +   G+ + V I+K L+F  GK
Sbjct: 63  KEWYFFSP--RDRKYPNGQRPNRAAGTGYWKATGADKPV---GSPRAVAIKKALVFYAGK 117

Query: 127 RGHETKTQWVMHQYHLVAI 145
                KT W+MH+Y L  +
Sbjct: 118 PPKGVKTNWIMHEYRLADV 136

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255543647	242	transcription factor, putative [Ricinus	0.852	0.690	0.577	3e-49
224055785	244	NAC domain protein, IPR003441 [Populus t	0.734	0.590	0.635	2e-46
224129252	247	NAC domain protein, IPR003441 [Populus t	0.734	0.582	0.609	6e-43
302399029	263	NAC domain class transcription factor [M	0.719	0.536	0.556	8e-41
225451537	241	PREDICTED: NAC domain-containing protein	0.75	0.609	0.555	2e-40
296082304	162	unnamed protein product [Vitis vinifera]	0.688	0.833	0.574	5e-39
358248440	217	uncharacterized protein LOC100815663 [Gl	0.683	0.617	0.562	9e-38
224053533	257	NAC domain protein, IPR003441 [Populus t	0.857	0.653	0.5	1e-37
224075517	255	NAC domain protein, IPR003441 [Populus t	0.729	0.560	0.551	1e-37
357501337	256	NAC domain protein [Medicago truncatula]	0.765	0.585	0.516	7e-37

>gi|255543647|ref|XP_002512886.1| transcription factor, putative [Ricinus communis] gi|223547897|gb|EEF49389.1| transcription factor, putative [Ricinus communis]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/180 (57%), Positives = 127/180 (70%), Gaps = 13/180 (7%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           MEK +N V NGG+KLPIGYRF PTDEELVVHYL+RKVFG PLPAS+IPELDVFQ+ P  L
Sbjct: 1   MEK-SNLVANGGMKLPIGYRFHPTDEELVVHYLRRKVFGFPLPASVIPELDVFQTDPWNL 59

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           PGD+KEK+ +F   + NES   N    + AAGSGYWKP GK R I+AS    +VG+RKT 
Sbjct: 60  PGDLKEKRYFFSRKLGNESENRN----RRAAGSGYWKPTGKGRPIIASFGNHIVGLRKTF 115

Query: 121 IFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPRKR 180
           +FCEGK  +E+KTQW+MH+Y LV   T  N +Q       F  NL D +V   R++ +KR
Sbjct: 116 LFCEGKNPNESKTQWIMHEYRLVGSGTLLNTSQ------VFKLNLGDWVVY--RVFQKKR 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055785|ref|XP_002298652.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845910|gb|EEE83457.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 114/151 (75%), Gaps = 7/151 (4%)

Query: 6   NYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMK 65
           N+V NGGL+LPIGYRF PTDEELVVHYLKRKV GLPLPA++IPE DVFQ+ P  LPG++K
Sbjct: 5   NFVENGGLRLPIGYRFHPTDEELVVHYLKRKVLGLPLPAAVIPEFDVFQTDPWSLPGNLK 64

Query: 66  EKKRYFFSNIRNESAIDNDGKCKIAAG---SGYWKPVGKNRQILASGTKQVVGIRKTLIF 122
           E KRYFFS    +   D   KCK +AG   SGYWKPVGK +QI+ASG+ Q VGIRKTL+F
Sbjct: 65  E-KRYFFS---QKKLNDFGTKCKRSAGYIPSGYWKPVGKGKQIVASGSNQAVGIRKTLVF 120

Query: 123 CEGKRGHETKTQWVMHQYHLVAIATNTNLTQ 153
            E     +T+TQWVMH+Y LV + T+   TQ
Sbjct: 121 RERNHSSKTRTQWVMHEYCLVGLPTDPKTTQ 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129252|ref|XP_002328928.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222839358|gb|EEE77695.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 108/151 (71%), Gaps = 7/151 (4%)

Query: 6   NYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMK 65
           N+V NGG KLPIGYRF PTDEELVVHYLKRKV GLP+PAS+IPE DVFQ+ P  LPG++K
Sbjct: 5   NFVENGGFKLPIGYRFHPTDEELVVHYLKRKVLGLPMPASVIPEFDVFQNDPSSLPGNLK 64

Query: 66  EKKRYFFSNIRNESAIDNDGKCKIAAG---SGYWKPVGKNRQILASGTKQVVGIRKTLIF 122
           E KRYFFS  +     D   KCK  AG   SGYWKP+GK +QI+AS + + VG RKTL+F
Sbjct: 65  E-KRYFFSQKKWN---DFGTKCKRTAGSGPSGYWKPIGKGKQIVASDSNKAVGTRKTLVF 120

Query: 123 CEGKRGHETKTQWVMHQYHLVAIATNTNLTQ 153
            E K   +T++QWVMH Y L   AT    TQ
Sbjct: 121 KERKHSIKTRSQWVMHGYCLAGSATGPKTTQ 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399029|gb|ADL36809.1| NAC domain class transcription factor [Malus x domestica]

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 110/158 (69%), Gaps = 17/158 (10%)

Query: 4   QNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD 63
           + NYV+NGG+K+P+GYRFRPTDEELV+HYL RKV   PLPASIIPE DVF++HP GLPGD
Sbjct: 5   KENYVINGGVKMPVGYRFRPTDEELVLHYLMRKVHAAPLPASIIPEFDVFETHPWGLPGD 64

Query: 64  MKEKKRYFFSNIRNESAIDNDG-KCKIAAGSGYWKPVGKNRQIL-ASGTKQVVGIRKTLI 121
           ++  KRYFF    NE+   N G   K AAG GYWKP+GK +QI+  S + + VGIRKTL+
Sbjct: 65  VR-GKRYFF---HNENMNKNVGINSKRAAGCGYWKPIGKKKQIVNNSESNEAVGIRKTLV 120

Query: 122 FCE-----------GKRGHETKTQWVMHQYHLVAIATN 148
           FCE           G     T+T+W+MH+Y L+A   N
Sbjct: 121 FCERKRRRCHHHHHGSTNTTTQTRWLMHEYRLLASQAN 158

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451537|ref|XP_002273649.1| PREDICTED: NAC domain-containing protein 68 [Vitis vinifera] gi|147820260|emb|CAN71479.1| hypothetical protein VITISV_038623 [Vitis vinifera]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 107/153 (69%), Gaps = 6/153 (3%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           MEK +     G +KLPIG+RF PTDEELVVHYLKRK    PLPAS+IPE DVF ++P  L
Sbjct: 1   MEKPSFVRSGGMVKLPIGFRFHPTDEELVVHYLKRKALSFPLPASVIPEFDVFLTNPWDL 60

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           PGD+KE +RYFFS     S      KC+   G GYWK +GK+ QI+ASG+ + VG+++TL
Sbjct: 61  PGDVKE-RRYFFS-----SGKGFGNKCRRVTGCGYWKAIGKDIQIVASGSSRAVGMKRTL 114

Query: 121 IFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQ 153
           +F EGK G  T+TQWVMH+Y LV + T  + TQ
Sbjct: 115 VFYEGKLGAGTRTQWVMHEYRLVGLGTAPSSTQ 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082304|emb|CBI21309.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 102/141 (72%), Gaps = 6/141 (4%)

Query: 13  LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEKKRYFF 72
           +KLPIG+RF PTDEELVVHYLKRK    PLPAS+IPE DVF ++P  LPGD+KE +RYFF
Sbjct: 2   VKLPIGFRFHPTDEELVVHYLKRKALSFPLPASVIPEFDVFLTNPWDLPGDVKE-RRYFF 60

Query: 73  SNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETK 132
           S     S      KC+   G GYWK +GK+ QI+ASG+ + VG+++TL+F EGK G  T+
Sbjct: 61  S-----SGKGFGNKCRRVTGCGYWKAIGKDIQIVASGSSRAVGMKRTLVFYEGKLGAGTR 115

Query: 133 TQWVMHQYHLVAIATNTNLTQ 153
           TQWVMH+Y LV + T  + TQ
Sbjct: 116 TQWVMHEYRLVGLGTAPSSTQ 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248440|ref|NP_001239882.1| uncharacterized protein LOC100815663 [Glycine max] gi|255642301|gb|ACU21415.1| unknown [Glycine max]

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 103/144 (71%), Gaps = 10/144 (6%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           M +  N+VV GG+KLPIG+RF PTDEEL++HYLK+K F   LPAS+I E DVFQ+ P  L
Sbjct: 1   MGRFENHVVKGGIKLPIGFRFCPTDEELLLHYLKKKAFAQQLPASVISEFDVFQTEPWKL 60

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           PG+++E  RYFFSN  N       G  K  AGSG WK VGK +QI+ S + QV+G+++TL
Sbjct: 61  PGELRE-NRYFFSNRSN-------GNIKRPAGSGCWKSVGKEKQIIHSESNQVIGMKETL 112

Query: 121 IFCEGKRGHETKTQWVMHQYHLVA 144
            FC+G   HET+TQWVMH+  LVA
Sbjct: 113 FFCKG--SHETRTQWVMHELRLVA 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053533|ref|XP_002297860.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845118|gb|EEE82665.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 119/190 (62%), Gaps = 22/190 (11%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           MEK + +V NG L+LP G+RF PTDEELVV YLKRKVF  PLPASIIPE+DV +S P  L
Sbjct: 1   MEKLS-FVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDL 59

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           PGD+ E++RYFFS    E+   N  +   A GSGYWK  G ++QI+ S   QVVG++KTL
Sbjct: 60  PGDL-EQERYFFST--REAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGHQVVGMKKTL 116

Query: 121 IFCEGKRGHETKTQWVMHQYHLVAIAT-------NTNLTQPVSPFFFFWEN--LCDHIVI 171
           +F  GK  H T+T W+MH+Y L +  T       N N TQ   P     EN  LC     
Sbjct: 117 VFYRGKPPHGTRTDWIMHEYRLASTETTACNTLKNKNSTQ--GPVVVPMENWVLC----- 169

Query: 172 KSRLYPRKRG 181
             R++ +KRG
Sbjct: 170 --RIFLKKRG 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075517|ref|XP_002304662.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222842094|gb|EEE79641.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 102/147 (69%), Gaps = 4/147 (2%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           MEK N +V NG ++LP G+RF PTDEELVV YLKRKVF  PLPASIIPE+DV +S P  L
Sbjct: 1   MEKLN-FVKNGAVRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDL 59

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           PGD+ E++RYFFS    E+   N  +   A GSGYWK  G ++QI+ S   Q VG++KTL
Sbjct: 60  PGDL-EQERYFFST--REAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGNQAVGMKKTL 116

Query: 121 IFCEGKRGHETKTQWVMHQYHLVAIAT 147
           +F  GK  H T+T W+MH+Y L +  T
Sbjct: 117 VFYRGKPPHGTRTDWIMHEYRLASTET 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501337|ref|XP_003620957.1| NAC domain protein [Medicago truncatula] gi|355495972|gb|AES77175.1| NAC domain protein [Medicago truncatula]

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 3/153 (1%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           MEK N    NG ++LP G+RF PTDEELVV YLKRKVF  PLPASIIPE+D+ +S P  L
Sbjct: 1   MEKMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDL 60

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           PGDM E++RYFFS    E+   N  +   A  SGYWK  G ++QI+ S T +V G++KTL
Sbjct: 61  PGDM-EQERYFFST--KEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKTHEVAGMKKTL 117

Query: 121 IFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQ 153
           +F  GK  H ++T W+MH+Y L +  +N  L +
Sbjct: 118 VFYRGKPPHGSRTDWIMHEYRLTSSHSNPPLNE 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2159073	206	NAC084 "NAC domain containing	0.729	0.694	0.523	6.3e-37
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.673	0.523	0.533	2.2e-34
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.698	0.511	0.527	2.5e-33
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.647	0.348	0.458	2.5e-26
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.765	0.464	0.406	2.6e-24
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.642	0.350	0.428	3.3e-24
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.642	0.393	0.416	5.3e-24
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.647	0.501	0.448	1.1e-23
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.642	0.199	0.395	5.3e-23
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.642	0.263	0.395	7.9e-23

TAIR|locus:2159073 NAC084 "NAC domain containing protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/149 (52%), Positives = 100/149 (67%)

Query:     1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
             ME +   VVNGG+KLPIGYRF PT++EL++HYL  K F  PLP+SIIP  D+F SHPL  
Sbjct:     1 MEVEKRIVVNGGMKLPIGYRFHPTEQELILHYLLPKAFASPLPSSIIPVFDLFFSHPLSF 60

Query:    61 PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
             PGD KEK+RYFF   R  S+  N+ + KI++G GYWKP+GK R I+A G  +  GIR+TL
Sbjct:    61 PGDQKEKQRYFFCKKREVSS--NEHRIKISSGDGYWKPIGKERPIIACG--KTFGIRRTL 116

Query:   121 IFCEGKRGHE--TKTQWVMHQYHLVAIAT 147
              F E  +      KT+W M +Y L   A+
Sbjct:   117 AFYETNKSSSYCNKTRWSMTEYCLAGFAS 145

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 72/135 (53%), Positives = 95/135 (70%)

Query:     8 VVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMKEK 67
             V NG L+LP G+RF PTDEELVV YLKRKV   PLPASIIPE DV ++ P  LPG++ EK
Sbjct:     7 VKNGVLRLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLPGNL-EK 65

Query:    68 KRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKR 127
             +RYFFS    E+   N  +   A GSGYWK  G +++++ S   Q+VG++KTL+F +GK 
Sbjct:    66 ERYFFST--REAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYKGKP 123

Query:   128 GHETKTQWVMHQYHL 142
              H ++T W+MH+Y L
Sbjct:   124 PHGSRTDWIMHEYRL 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 76/144 (52%), Positives = 99/144 (68%)

Query:     1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
             MEK+++    G L+LP G+RF PTDEELVV YL+RKV GLPLPAS+IPE DV +S P  L
Sbjct:     1 MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDL 60

Query:    61 PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQ-VVGIRKT 119
             PGD  E + YFFS    E+   N  +   + GSGYWK  G ++QI   G K+ VVG++KT
Sbjct:    61 PGDC-ESEMYFFST--REAKYPNGNRSNRSTGSGYWKATGLDKQI---GKKKLVVGMKKT 114

Query:   120 LIFCEGKRGHETKTQWVMHQYHLV 143
             L+F +GK  + T+T WV+H+Y LV
Sbjct:   115 LVFYKGKPPNGTRTNWVLHEYRLV 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 60/131 (45%), Positives = 80/131 (61%)

Query:    15 LPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMK--EKKRYFF 72
             LP G+RF PTDEELVVHYLKRK    PLP +II E+D+++  P  LP      E++ YFF
Sbjct:    17 LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    73 SNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETK 132
             S    +    N  +   AA SGYWK  G ++ +LAS   Q VG++K L+F  GK     K
Sbjct:    77 SP--RDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVK 134

Query:   133 TQWVMHQYHLV 143
             + W+MH+Y L+
Sbjct:   135 SDWIMHEYRLI 145

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 65/160 (40%), Positives = 88/160 (55%)

Query:     1 MEKQNNYVVNGGLK-LPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLG 59
             ME   +  +  G   LP G+RF PTDEELVVHYLK+K   +PLP SII E+D+++  P  
Sbjct:     1 MENMGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWE 60

Query:    60 LPGDMK--EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIR 117
             LP      E + YFFS    +    N  +   AA SGYWK  G ++ I    + +V G++
Sbjct:    61 LPSKASFGEHEWYFFSP--RDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKV-GVK 117

Query:   118 KTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSP 157
             K L+F  GK     KT W+MH+Y L    T+ NL+    P
Sbjct:   118 KALVFYGGKPPKGIKTDWIMHEYRL----TDGNLSTAAKP 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/133 (42%), Positives = 79/133 (59%)

Query:    15 LPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMK--EKKRYFF 72
             LP G+RF PTDEEL++HYL++KV   P+P SII ++D+++S P  LP      EK+ YFF
Sbjct:    10 LPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYFF 69

Query:    73 SNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILA---SGTKQVVGIRKTLIFCEGKRGH 129
             S    +    N  +   AA SGYWK  G ++ I      G  + +GI+K L+F  GK   
Sbjct:    70 SP--RDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPK 127

Query:   130 ETKTQWVMHQYHL 142
               KT W+MH+Y L
Sbjct:   128 GVKTNWIMHEYRL 140

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/132 (41%), Positives = 81/132 (61%)

Query:    15 LPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMK--EKKRYFF 72
             LP G+RF PTDEELV+HYLKRK   +PLP +II ++D+++  P  LP      E++ YFF
Sbjct:    17 LPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    73 SNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT--KQVVGIRKTLIFCEGKRGHE 130
             S    +    N  +   AA SGYWK  G ++ ++++G    + VG++K L+F  GK    
Sbjct:    77 SP--RDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKG 134

Query:   131 TKTQWVMHQYHL 142
              K+ W+MH+Y L
Sbjct:   135 VKSDWIMHEYRL 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 61/136 (44%), Positives = 81/136 (59%)

Query:    13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDMK---EKKR 69
             L+ P G+RF PTDEELV+ YL RK    P+PA II ELD+++  P  LP DM    EK+ 
Sbjct:     8 LQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLP-DMALYGEKEW 66

Query:    70 YFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGH 129
             YFFS    +    N  +   AAG+GYWK  G ++ I   G  + VGI+K L+F  GK  +
Sbjct:    67 YFFSP--RDRKYPNGSRPNRAAGTGYWKATGADKPI---GRPKPVGIKKALVFYSGKPPN 121

Query:   130 ETKTQWVMHQYHLVAI 145
               KT W+MH+Y L  +
Sbjct:   122 GEKTNWIMHEYRLADV 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 5.3e-23, P = 5.3e-23
 Identities = 53/134 (39%), Positives = 83/134 (61%)

Query:    13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDM----KEKK 68
             + +P G+RF PTDEELV++YLKRK+ G  +   IIPE+D+++  P  LPG      K+ +
Sbjct:     4 VSMPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPGKSLLPSKDLE 63

Query:    69 RYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRG 128
              +FFS    +    N  +   A  +GYWK  GK+R++ +    ++VG +KTL++  G+  
Sbjct:    64 WFFFSP--RDRKYPNGSRTNRATKAGYWKATGKDRKVTSHS--RMVGTKKTLVYYRGRAP 119

Query:   129 HETKTQWVMHQYHL 142
             H ++T WVMH+Y L
Sbjct:   120 HGSRTDWVMHEYRL 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 7.9e-23, P = 7.9e-23
 Identities = 53/134 (39%), Positives = 80/134 (59%)

Query:    13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGDM----KEKK 68
             + LP G+RF PTDEEL+ +YLKRK+ GL +   +I E+D+++  P  LPG      K+++
Sbjct:     4 VSLPPGFRFHPTDEELITYYLKRKINGLEIELEVIAEVDLYKCEPWDLPGKSLLPSKDQE 63

Query:    69 RYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRG 128
              YFFS    +    N  +   A   GYWK  GK+R++  S   + +G +KTL++  G+  
Sbjct:    64 WYFFSP--RDRKYPNGSRTNRATKGGYWKATGKDRRV--SWRDRAIGTKKTLVYYRGRAP 119

Query:   129 HETKTQWVMHQYHL 142
             H  +T WVMH+Y L
Sbjct:   120 HGIRTGWVMHEYRL 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC114 NAC domain protein, IPR003441 (244 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	3e-46

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  148 bits (375), Expect = 3e-46
 Identities = 62/132 (46%), Positives = 85/132 (64%), Gaps = 7/132 (5%)

Query: 15  LPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SIIPELDVFQSHPLGLPGDM---KEKKRY 70
           LP G+RF PTDEELVV+YLKRKV G PLP   +IPE+D+++  P  LP       +++ Y
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 71  FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
           FFS    +    N  +   A GSGYWK  GK++ +L+ G  +VVG++KTL+F +G+    
Sbjct: 61  FFSPRDRKYP--NGSRTNRATGSGYWKATGKDKPVLSKG-GEVVGMKKTLVFYKGRAPKG 117

Query: 131 TKTQWVMHQYHL 142
            KT WVMH+Y L
Sbjct: 118 EKTDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=7.2e-45  Score=280.06  Aligned_cols=126  Identities=44%  Similarity=0.891  Sum_probs=96.2

Q ss_pred             CCCCeeeCCChHHHHHHHHHHhhcCCCCCC-CcccccCCCCCCCCCCCCc--CCCCeEEEEeccccccccCCCCcccccc
Q 029281           15 LPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNESAIDNDGKCKIAA   91 (196)
Q Consensus        15 LppG~rF~PTDeELv~~YL~~k~~g~~l~~-~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~~~~~~g~R~~R~~   91 (196)
                      |||||||+|||+|||.+||++|+.|.+++. ++|+++|||++|||+|+..  .++++||||++  ++.++.++.|.+|++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~--~~~~~~~~~r~~R~~   78 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSP--RKKKYPNGGRPNRVT   78 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE------------S-EEE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEe--cccccCCcccccccc
Confidence            899999999999999999999999999888 8999999999999999932  45689999999  666677889999999


Q ss_pred             CCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeC
Q 029281           92 GSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLV  143 (196)
Q Consensus        92 g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~  143 (196)
                      ++|+||++|+.++|.. .++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        79 ~~G~Wk~~g~~~~i~~-~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   79 GGGYWKSTGKEKPIKD-PGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             TTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cceEEeeccccccccc-ccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999999987 48999999999999998888899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-22
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		4e-22
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-21

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 13  LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRY 70
           L LP G+RF PTDEEL+V YL RK  G      +I E+D+++  P  LP      EK+ Y
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 71  FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
           FFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  GK    
Sbjct: 78  FFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKG 133
Query: 131 TKTQWVMHQYHLVAIATNTNLTQ 153
           TKT W+MH+Y L+  +     T+
Sbjct: 134 TKTNWIMHEYRLIEPSRRNGSTK 156

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 13  LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRY 70
           L LP G+RF PTDEEL+V YL RK  G      +I E+D+++  P  LP      EK+ Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 71  FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
           FFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  GK    
Sbjct: 75  FFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKG 130
Query: 131 TKTQWVMHQYHLVAIATNTNLTQ 153
           TKT W+MH+Y L+  +     T+
Sbjct: 131 TKTNWIMHEYRLIEPSRRNGSTK 153

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 13  LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRY 70
           L LP G+RF PTD+ELV HYL RK  G  LP  II E+D+++  P  LP       ++ Y
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 71  FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
           FF+    +    N  +   AAG+GYWK  G ++ +   G  + +GI+K L+F  GK    
Sbjct: 73  FFTP--RDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAGKAPRG 128
Query: 131 TKTQWVMHQYHL 142
            KT W+MH+Y L
Sbjct: 129 VKTDWIMHEYRL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-51
1ut7_A	171	No apical meristem protein; transcription regulati	3e-50

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  162 bits (413), Expect = 1e-51
 Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 14/185 (7%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           M  +        L LP G+RF PTD+ELV HYL RK  G  LP  II E+D+++  P  L
Sbjct: 1   MGMRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDL 60

Query: 61  PG--DMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRK 118
           P       ++ YFF+    +    N  +   AAG+GYWK  G ++ +   G  + +GI+K
Sbjct: 61  PERALFGAREWYFFT--PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKK 116

Query: 119 TLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCDHIVIKSRLYPR 178
            L+F  GK     KT W+MH+Y L          +  S     W  LC       RLY +
Sbjct: 117 ALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW-VLC-------RLYNK 168

Query: 179 KRGFE 183
           K  +E
Sbjct: 169 KNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  159 bits (404), Expect = 3e-50
 Identities = 59/143 (41%), Positives = 78/143 (54%), Gaps = 6/143 (4%)

Query: 13  LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRY 70
           L LP G+RF PTDEEL+V YL RK  G      +I E+D+++  P  LP      EK+ Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 71  FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
           FFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  GK    
Sbjct: 75  FFS--PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKG 130

Query: 131 TKTQWVMHQYHLVAIATNTNLTQ 153
           TKT W+MH+Y L+  +     T+
Sbjct: 131 TKTNWIMHEYRLIEPSRRNGSTK 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.2e-55  Score=355.11  Aligned_cols=158  Identities=37%  Similarity=0.699  Sum_probs=129.7

Q ss_pred             cCccCCCCCeeeCCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc--CCCCeEEEEeccccccccCCCCcc
Q 029281           10 NGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNESAIDNDGKC   87 (196)
Q Consensus        10 ~~~~~LppG~rF~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~~~~~~g~R~   87 (196)
                      ..++.|||||||+|||||||.|||++|+.|.++|.++|+++|||.+|||+||+.  .++.+|||||+  +.+++++|.|.
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~--r~~ky~~g~R~   87 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP--RDRKYPNGSRP   87 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEE--CCC-----CCS
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEec--cccccCCCCCc
Confidence            456899999999999999999999999999999999999999999999999987  45689999999  77889999999


Q ss_pred             ccccCCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeCCCCCCCCCCCCCCcccccccceec
Q 029281           88 KIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPFFFFWENLCD  167 (196)
Q Consensus        88 ~R~~g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~w~vlC~  167 (196)
                      +|+|++|+||++|++++|..  +|.+||+||+|+||.++++++.+|+|+||||+|.+..........-+.....| ||| 
T Consensus        88 nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w-VlC-  163 (174)
T 3ulx_A           88 NRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW-VLC-  163 (174)
T ss_dssp             CEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE-EEE-
T ss_pred             eeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE-EEE-
Confidence            99999999999999999985  58999999999999999999999999999999998765421111111223478 899 


Q ss_pred             EEEEec
Q 029281          168 HIVIKS  173 (196)
Q Consensus       168 ~v~~k~  173 (196)
                      +||+|+
T Consensus       164 rvf~K~  169 (174)
T 3ulx_A          164 RLYNKK  169 (174)
T ss_dssp             EEEESC
T ss_pred             EEEEcC
Confidence            777654

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.6e-55  Score=353.80  Aligned_cols=164  Identities=39%  Similarity=0.653  Sum_probs=130.4

Q ss_pred             CCccccccccCccCCCCCeeeCCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc--CCCCeEEEEeccccc
Q 029281            1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNE   78 (196)
Q Consensus         1 ~~~~~~~~~~~~~~LppG~rF~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~   78 (196)
                      |+.+++- ...++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+.  .++.+|||||+  +.
T Consensus         4 m~~~~~~-~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~--r~   80 (171)
T 1ut7_A            4 MGIQETD-PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP--RD   80 (171)
T ss_dssp             CCCC-----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEE--CC
T ss_pred             cccccCC-cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEec--cc
Confidence            5555443 2557899999999999999999999999999999999999999999999999987  46789999999  77


Q ss_pred             cccCCCCccccccCCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeCCCCCCCCCCCCCCcc
Q 029281           79 SAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPF  158 (196)
Q Consensus        79 ~~~~~g~R~~R~~g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~  158 (196)
                      +++++|.|.+|+|++|+||++|++++|..  ++.+||+|++|+||.++++++.+|+|+||||+|.+.......     ..
T Consensus        81 ~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~-----~~  153 (171)
T 1ut7_A           81 RKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGS-----TK  153 (171)
T ss_dssp             C-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------
T ss_pred             cccCCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCc-----cc
Confidence            88999999999999999999999999986  569999999999999999999999999999999987632111     11


Q ss_pred             cccccceecEEEEeceee
Q 029281          159 FFFWENLCDHIVIKSRLY  176 (196)
Q Consensus       159 ~~~w~vlC~~v~~k~r~~  176 (196)
                      ...| ||| +||+|++..
T Consensus       154 ~~~~-VlC-rv~~k~~~~  169 (171)
T 1ut7_A          154 LDDW-VLC-RIYKKQSSA  169 (171)
T ss_dssp             -CCE-EEE-EEEECC---
T ss_pred             CCCE-EEE-EEEEcCCCC
Confidence            2357 899 888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	7e-43

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  139 bits (351), Expect = 7e-43
 Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 1   MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL 60
           M  Q    +   L LP G+RF PTDEEL+V YL RK  G      +I E+D+++  P  L
Sbjct: 4   MGIQETDPL-TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVL 62

Query: 61  PGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTL 120
           P      ++ ++     +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L
Sbjct: 63  PNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKAL 120

Query: 121 IFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQ 153
           +F  GK    TKT W+MH+Y L+  +     T+
Sbjct: 121 VFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTK 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.9e-53  Score=336.16  Aligned_cols=160  Identities=41%  Similarity=0.687  Sum_probs=127.6

Q ss_pred             CCccccccccCccCCCCCeeeCCChHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCc--CCCCeEEEEeccccc
Q 029281            1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNE   78 (196)
Q Consensus         1 ~~~~~~~~~~~~~~LppG~rF~PTDeELv~~YL~~k~~g~~l~~~~I~~~Dvy~~~Pw~Lp~~--~~~~~~yFFs~~~~~   78 (196)
                      |+.+ +--...+++|||||||+|||+|||.|||++|+.|.|++.++|+++|||++|||+||+.  .++++||||++  +.
T Consensus         4 ~~~~-~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~--~~   80 (166)
T d1ut7a_           4 MGIQ-ETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP--RD   80 (166)
T ss_dssp             CCCC-----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEE--CC
T ss_pred             cccc-ccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEee--ec
Confidence            5555 3355667899999999999999999999999999999999999999999999999976  45688999999  66


Q ss_pred             cccCCCCccccccCCceeeecCCceeeEecCCCeEEEEEEEeeeecccCCCCCccCeEEEEEEeCCCCCCCCCCCCCCcc
Q 029281           79 SAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVSPF  158 (196)
Q Consensus        79 ~~~~~g~R~~R~~g~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~F~~g~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~  158 (196)
                      +++++|.|.+|++++|+||++|+++.|.+  +|.+||+|++|+||+++++++.+|+|+||||+|.+.........     
T Consensus        81 ~k~~~g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~-----  153 (166)
T d1ut7a_          81 RKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTK-----  153 (166)
T ss_dssp             C-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------
T ss_pred             cccCCCCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccc-----
Confidence            78889999999999999999999988875  78999999999999999999999999999999988765432221     


Q ss_pred             cccccceecEEEEe
Q 029281          159 FFFWENLCDHIVIK  172 (196)
Q Consensus       159 ~~~w~vlC~~v~~k  172 (196)
                      ...| ||| +|++|
T Consensus       154 ~~~~-VLC-rI~~K  165 (166)
T d1ut7a_         154 LDDW-VLC-RIYKK  165 (166)
T ss_dssp             -CCE-EEE-EEEEC
T ss_pred             cCCE-EEE-EEEec
Confidence            1246 899 77764