Citrus Sinensis ID: 029295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHcccccccEEEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEEcccEEEEEEEEEcccccccccccccHHHHcHHHccHHHHcccHHHHHHccccccccccccccccccHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
MGAYKYVSELWRKKQSDVMRFLQRVRcweyrqhpsivrvtrptrpdkarrlgykakqgYVVYRVRVrrggrkrpvpkgivygkptnqgvtqlkfqrsKRSVAEERAgrklgglkdstYKYFEVILVDAAhnairndprinwickpvhkhrelrgltsagkkyrglrgkghlhhkarpsrratwkrnqtlslrryr
Flexible Loop (DISEMBL)
mgaykyvselwrkkqsdVMRFLQRVrcweyrqhpsivrvtrptrpdkarrlgykakqgyvvyrvrvrrggrkrpvpkgivygkptnqgvtqlkfqrskrsvaeeragrklgglkdstyKYFEVILVDAAhnairndprinwickpvhkhrelrgltsagkkyrglrgkghlhhkarpsrratwkrnqtlslrryr
Low Complexity Region (SEG)
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQgyvvyrvrvrrggrkrpvpkgIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR
Disordered region (IsUnstruct)
***YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPT***KARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGK***************************GGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLT***************************************
Disordered Region (DISOPRED)
*GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRG************************FQRSKRSVAEERAGRKLGGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGL*S*****************ARPSRRATWKRNQTLS*RRYR
Disordered Region (DISEMBL)
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQ**************AGRKLGGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRG******************WKRNQTLSLRRYR
Disordered Region (DISPRO)
*GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRP*P*GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKK********************TWK*NQTLS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
O82528	204	60S ribosomal protein L15	N/A	no	1.0	0.955	0.892	3e-99
O23515	204	60S ribosomal protein L15	yes	no	1.0	0.955	0.867	4e-89
Q8VYF1	204	60S ribosomal protein L15	yes	no	1.0	0.955	0.862	8e-89
O65082	204	60S ribosomal protein L15	N/A	no	1.0	0.955	0.848	1e-86
O65050	204	60S ribosomal protein L15	N/A	no	1.0	0.955	0.848	2e-86
P61314	204	60S ribosomal protein L15	yes	no	0.994	0.950	0.697	5e-74
Q5NVE0	204	60S ribosomal protein L15	yes	no	0.994	0.950	0.697	5e-74
Q9CZM2	204	60S ribosomal protein L15	yes	no	0.994	0.950	0.697	5e-74
Q4R5B2	204	60S ribosomal protein L15	N/A	no	0.994	0.950	0.697	5e-74
P61313	204	60S ribosomal protein L15	yes	no	0.994	0.950	0.697	5e-74

>sp|O82528|RL15_PETHY 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1

 Score =  360 bits (925), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 182/204 (89%), Positives = 187/204 (91%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY YVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVD AH AIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           H+KA PSRRA WKRNQTLSL RYR
Sbjct: 181 HNKAPPSRRANWKRNQTLSLPRYR 204

Petunia hybrida (taxid: 4102)

>sp|O23515|RL151_ARATH 60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1

 Score =  327 bits (837), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 186/204 (91%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL------- 113
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL       
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 114 --KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
             +DSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           +HK RPSRRATWK+N +LSLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSLSLRRYR 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYF1|RL152_ARATH 60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1

 Score =  325 bits (834), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 176/204 (86%), Positives = 186/204 (91%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL------- 113
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL       
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 114 --KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
             +DSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           +HK RPSRRATWK+N ++SLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSISLRRYR 204

Arabidopsis thaliana (taxid: 3702)

>sp|O65082|RL15B_PICMA 60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1

 Score =  318 bits (815), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/204 (84%), Positives = 183/204 (89%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL------- 113
           VYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL       
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 114 --KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
             +DSTYKY+EV+LVD AH  IRNDPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           +HKARPS+RATWKRN TLSLRRYR
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

Picea mariana (taxid: 3335)

>sp|O65050|RL15A_PICMA 60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1

 Score =  318 bits (815), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/204 (84%), Positives = 185/204 (90%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL------- 113
           VYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL       
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 114 --KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
             +DSTYKY+E+ILVD AH+AIR DPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           +HKARPS+RATWKRN TLSLRRYR
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

Picea mariana (taxid: 3335)

>sp|P61314|RL15_RAT 60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 158/205 (77%), Gaps = 11/205 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
              DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 171 LHHKARPSRRATWKRNQTLSLRRYR 195
            HH    SRRA W+R  TL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Rattus norvegicus (taxid: 10116)

>sp|Q5NVE0|RL15_PONAB 60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 158/205 (77%), Gaps = 11/205 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
              DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 171 LHHKARPSRRATWKRNQTLSLRRYR 195
            HH    SRRA W+R  TL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Pongo abelii (taxid: 9601)

>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 158/205 (77%), Gaps = 11/205 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
              DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 171 LHHKARPSRRATWKRNQTLSLRRYR 195
            HH    SRRA W+R  TL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Mus musculus (taxid: 10090)

>sp|Q4R5B2|RL15_MACFA 60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 158/205 (77%), Gaps = 11/205 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
              DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 171 LHHKARPSRRATWKRNQTLSLRRYR 195
            HH    SRRA W+R  TL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Macaca fascicularis (taxid: 9541)

>sp|P61313|RL15_HUMAN 60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 158/205 (77%), Gaps = 11/205 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
              DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query: 171 LHHKARPSRRATWKRNQTLSLRRYR 195
            HH    SRRA W+R  TL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
224063657	204	predicted protein [Populus trichocarpa]	1.0	0.955	0.936	1e-104
224074171	204	predicted protein [Populus trichocarpa]	1.0	0.955	0.911	1e-101
192913004	204	ribosomal protein L15 [Elaeis guineensis	1.0	0.955	0.911	1e-101
255539825	204	ribosomal protein L15, putative [Ricinus	1.0	0.955	0.941	7e-98
6094014	204	RecName: Full=60S ribosomal protein L15	1.0	0.955	0.892	1e-97
194707842	204	unknown [Zea mays] gi|414886708|tpg|DAA6	1.0	0.955	0.862	7e-97
147780003	204	hypothetical protein VITISV_004609 [Viti	1.0	0.955	0.926	2e-96
226528613	204	60S ribosomal protein L15 [Zea mays] gi|	1.0	0.955	0.862	2e-96
226496391	204	60S ribosomal protein L15 [Zea mays] gi|	1.0	0.955	0.857	4e-96
225466041	204	PREDICTED: 60S ribosomal protein L15-lik	1.0	0.955	0.926	5e-96

>gi|224063657|ref|XP_002301250.1| predicted protein [Populus trichocarpa] gi|224137010|ref|XP_002327000.1| predicted protein [Populus trichocarpa] gi|222835315|gb|EEE73750.1| predicted protein [Populus trichocarpa] gi|222842976|gb|EEE80523.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/204 (93%), Positives = 193/204 (94%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYR+RVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK      
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVDAAHNAIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDAAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHKARPSRRATWKRNQTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNQTLSLRRYR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074171|ref|XP_002304285.1| predicted protein [Populus trichocarpa] gi|224138624|ref|XP_002326649.1| predicted protein [Populus trichocarpa] gi|118484142|gb|ABK93954.1| unknown [Populus trichocarpa] gi|222833971|gb|EEE72448.1| predicted protein [Populus trichocarpa] gi|222841717|gb|EEE79264.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/204 (91%), Positives = 190/204 (93%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYR+RVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+      
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVD AHNAIRNDPRINW+C PVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHKARPSRRA WKRN TLSLRRYR
Sbjct: 181 HHKARPSRRANWKRNNTLSLRRYR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192913004|gb|ACF06610.1| ribosomal protein L15 [Elaeis guineensis]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/204 (91%), Positives = 191/204 (93%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YR+RVRRGGRKRPVPKGIVYGKP NQG+TQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVDAAHNAIRNDPRINWICK VHKHRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 VNEDSTYKYFEVILVDAAHNAIRNDPRINWICKGVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHK RPSRRATWKRNQTLSLRRYR
Sbjct: 181 HHKVRPSRRATWKRNQTLSLRRYR 204

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539825|ref|XP_002510977.1| ribosomal protein L15, putative [Ricinus communis] gi|223550092|gb|EEF51579.1| ribosomal protein L15, putative [Ricinus communis]

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/204 (94%), Positives = 194/204 (95%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARR+GYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRMGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK      
Sbjct: 61  IYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHKARPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6094014|sp|O82528.1|RL15_PETHY RecName: Full=60S ribosomal protein L15 gi|3608479|gb|AAD13389.1| ribosomal protein L15 [Petunia x hybrida]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/204 (89%), Positives = 187/204 (91%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY YVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVD AH AIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           H+KA PSRRA WKRNQTLSL RYR
Sbjct: 181 HNKAPPSRRANWKRNQTLSLPRYR 204

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194707842|gb|ACF88005.1| unknown [Zea mays] gi|414886708|tpg|DAA62722.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  358 bits (918), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 176/204 (86%), Positives = 188/204 (92%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFE+ILVD AH AIRNDPRINW+C PVHKHRELRGLTSAGKK+RGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHTAIRNDPRINWLCNPVHKHRELRGLTSAGKKFRGLRGKGHT 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHK RPSRRATWKRNQTLSLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTLSLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780003|emb|CAN68893.1| hypothetical protein VITISV_004609 [Vitis vinifera]

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/204 (92%), Positives = 192/204 (94%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIV  TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVXATRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS+AEERAGRKLGGLK      
Sbjct: 61  IYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSIAEERAGRKLGGLKVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKY+EVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHKARPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528613|ref|NP_001148602.1| 60S ribosomal protein L15 [Zea mays] gi|194698344|gb|ACF83256.1| unknown [Zea mays] gi|195620698|gb|ACG32179.1| 60S ribosomal protein L15 [Zea mays] gi|195637452|gb|ACG38194.1| 60S ribosomal protein L15 [Zea mays] gi|414883699|tpg|DAA59713.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 176/204 (86%), Positives = 187/204 (91%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWR+KQSDVMRF+QRVRCWEYRQ PSIVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFE+ILVD AH AI+ DPRINW+C PVHKHRELRGLTSAGKKYRGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHKAIKTDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHT 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHK RPSRRATWKRNQTLSLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTLSLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496391|ref|NP_001150386.1| 60S ribosomal protein L15 [Zea mays] gi|195638814|gb|ACG38875.1| 60S ribosomal protein L15 [Zea mays]

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 175/204 (85%), Positives = 187/204 (91%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFE+ILVD AH AIR DPRINW+C PVHKHRELRGLTSAGKK+RGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHTAIRKDPRINWLCNPVHKHRELRGLTSAGKKFRGLRGKGHT 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHK RPSRRATWKRNQTLSLRRYR
Sbjct: 181 HHKNRPSRRATWKRNQTLSLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466041|ref|XP_002268465.1| PREDICTED: 60S ribosomal protein L15-like [Vitis vinifera]

 Score =  355 bits (911), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/204 (92%), Positives = 192/204 (94%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIV  TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVCATRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS+AEERAGRKLGGLK      
Sbjct: 61  IYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSIAEERAGRKLGGLKVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKY+EVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHKARPSRRATWKRN TLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2129081	204	AT4G16720 [Arabidopsis thalian	1.0	0.955	0.769	7.6e-80
TAIR|locus:2130923	204	AT4G17390 [Arabidopsis thalian	1.0	0.955	0.764	1.2e-79
CGD|CAL0005866	204	RPL15A [Candida albicans (taxi	0.994	0.950	0.617	2.2e-59
UNIPROTKB|G5E686	204	G5E686 "Ribosomal protein L15"	0.994	0.950	0.604	7.3e-59
UNIPROTKB|F1NQG5	206	RPL15 "Ribosomal protein L15"	0.994	0.941	0.604	9.3e-59
UNIPROTKB|E1BK63	204	E1BK63 "Ribosomal protein L15"	0.994	0.950	0.604	9.3e-59
UNIPROTKB|Q5EAD6	204	RPL15 "60S ribosomal protein L	0.994	0.950	0.604	9.3e-59
UNIPROTKB|E2QXF3	204	RPL15 "60S ribosomal protein L	0.994	0.950	0.604	9.3e-59
UNIPROTKB|P61313	204	RPL15 "60S ribosomal protein L	0.994	0.950	0.604	9.3e-59
UNIPROTKB|I3LK33	204	LOC100620439 "Ribosomal protei	0.994	0.950	0.604	9.3e-59

TAIR|locus:2129081 AT4G16720 [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/204 (76%), Positives = 165/204 (80%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                               IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+      
Sbjct:    61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
                DSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH 
Sbjct:   121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query:   172 HHKARPSRRATWKRNQTLSLRRYR 195
             +HK RPSRRATWK+N +LSLRRYR
Sbjct:   181 NHKNRPSRRATWKKNNSLSLRRYR 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2130923 AT4G17390 [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 156/204 (76%), Positives = 165/204 (80%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                               IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+      
Sbjct:    61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
                DSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH 
Sbjct:   121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query:   172 HHKARPSRRATWKRNQTLSLRRYR 195
             +HK RPSRRATWK+N ++SLRRYR
Sbjct:   181 NHKNRPSRRATWKKNNSISLRRYR 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

CGD|CAL0005866 RPL15A [Candida albicans (taxid:5476)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 126/204 (61%), Positives = 139/204 (68%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ EL RKKQSDVMRFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYLEELQRKKQSDVMRFLYRVRCWEYRQKNVIHRASRPSRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKPTNQGV QLK+Q+S RS AEER GR+   L+      
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPTNQGVNQLKYQKSLRSTAEERVGRRASNLRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
                DSTYKYFEVILVD +H AIR D R NWI  PVHKHRE RGLTSAGKK RG+  KGHL
Sbjct:   121 VNQDSTYKYFEVILVDPSHKAIRRDARYNWIVNPVHKHREARGLTSAGKKSRGIN-KGHL 179

Query:   172 HHKARPSRRATWKRNQTLSLRRYR 195
              +K +  RR TWK++ TLSL RYR
Sbjct:   180 FNKTKAGRRHTWKKHNTLSLWRYR 203

GO:0005730 "nucleolus" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

UNIPROTKB|G5E686 G5E686 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   180 FHHTVGGSRRAAWRRRNTLQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1NQG5 RPL15 "Ribosomal protein L15" [Gallus gallus (taxid:9031)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     3 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 62

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    63 IYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 122

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   123 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 181

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   182 FHHTIGGSRRAAWRRRNTLQLHRYR 206

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E1BK63 E1BK63 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    61 IYRIRVRRGGRKHPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5EAD6 RPL15 "60S ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QXF3 RPL15 "60S ribosomal protein L15" [Canis lupus familiaris (taxid:9615)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61313 RPL15 "60S ribosomal protein L15" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003723 "RNA binding" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|I3LK33 LOC100620439 "Ribosomal protein L15" [Sus scrofa (taxid:9823)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/205 (60%), Positives = 137/205 (66%)

Query:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
                DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct:   121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179

Query:   171 LHHKARPSRRATWKRNQTLSLRRYR 195
              HH    SRRA W+R  TL L RYR
Sbjct:   180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91374	RL15_CAEEL	No assigned EC number	0.6	0.9948	0.9509	yes	no
P30736	RL15_CHITE	No assigned EC number	0.6243	0.9948	0.9509	N/A	no
P54780	RL15B_YEAST	No assigned EC number	0.6911	0.9948	0.9509	yes	no
Q7T3M9	RL15_SINKN	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
O74895	RL15A_SCHPO	No assigned EC number	0.6666	0.9846	0.9552	yes	no
Q4R5B2	RL15_MACFA	No assigned EC number	0.6975	0.9948	0.9509	N/A	no
Q7T2N5	RL15_TACFU	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
Q8X034	RL15_NEUCR	No assigned EC number	0.6960	0.9948	0.9556	N/A	no
Q7T3P0	RL15_HYPNO	No assigned EC number	0.6975	0.9948	0.9509	N/A	no
P61368	RL15_HYDVU	No assigned EC number	0.6975	0.9948	0.9509	N/A	no
P61369	RL15_SILAS	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
Q9US22	RL15B_SCHPO	No assigned EC number	0.6666	0.9846	0.9552	yes	no
P61367	RL15_EPICO	No assigned EC number	0.6975	0.9948	0.9509	N/A	no
E2QXF3	RL15_CANFA	No assigned EC number	0.6975	0.9948	0.9509	yes	no
Q8U2F9	RL15E_PYRFU	No assigned EC number	0.4869	0.9230	0.9278	yes	no
A3DMU2	RL15E_STAMF	No assigned EC number	0.4489	0.9179	0.8136	yes	no
O13418	RL15_ASPNG	No assigned EC number	0.6617	0.9948	0.9556	yes	no
O65082	RL15B_PICMA	No assigned EC number	0.8480	1.0	0.9558	N/A	no
P61313	RL15_HUMAN	No assigned EC number	0.6975	0.9948	0.9509	yes	no
O82528	RL15_PETHY	No assigned EC number	0.8921	1.0	0.9558	N/A	no
O82712	RL15_QUESU	No assigned EC number	0.5294	0.9846	0.9552	N/A	no
Q90YV2	RL15_ICTPU	No assigned EC number	0.7073	0.9948	0.9509	N/A	no
Q7T3N1	RL15_MYLPI	No assigned EC number	0.7024	0.9948	0.9509	N/A	no
Q7T3N9	RL15_CARAU	No assigned EC number	0.6975	0.9948	0.9509	N/A	no
Q7T3N8	RL15_CTEID	No assigned EC number	0.7024	0.9948	0.9509	N/A	no
Q7T3N3	RL15_PARDA	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
Q7T3N2	RL15_MONAL	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
Q9CZM2	RL15_MOUSE	No assigned EC number	0.6975	0.9948	0.9509	yes	no
Q86K01	RL15_DICDI	No assigned EC number	0.6634	1.0	0.9512	yes	no
Q7T3N7	RL15_CYPCA	No assigned EC number	0.6975	0.9948	0.9509	N/A	no
Q7T3N6	RL15_HYPMO	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
P61314	RL15_RAT	No assigned EC number	0.6975	0.9948	0.9509	yes	no
Q9XYC2	RL15_ORCLI	No assigned EC number	0.6225	1.0	0.9558	N/A	no
Q22A30	RL15_TETTS	No assigned EC number	0.6372	1.0	0.9558	N/A	no
O23515	RL151_ARATH	No assigned EC number	0.8676	1.0	0.9558	yes	no
A9A7T0	RL15E_METM6	No assigned EC number	0.4690	0.9384	0.9432	yes	no
P05748	RL15A_YEAST	No assigned EC number	0.6911	0.9948	0.9509	yes	no
Q7T3N4	RL15_MEGAM	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
Q8VYF1	RL152_ARATH	No assigned EC number	0.8627	1.0	0.9558	yes	no
Q5EAD6	RL15_BOVIN	No assigned EC number	0.6975	0.9948	0.9509	yes	no
P54060	RL15E_METJA	No assigned EC number	0.4789	0.9179	0.9226	yes	no
P52818	RL15_ANOGA	No assigned EC number	0.6759	0.8666	0.8284	yes	no
Q7T2N4	RL15_SILME	No assigned EC number	0.6926	0.9948	0.9509	N/A	no
O17445	RL15_DROME	No assigned EC number	0.6341	0.9948	0.9509	yes	no
Q7T3P1	RL15_ANGJA	No assigned EC number	0.6829	0.9948	0.9509	N/A	no
Q5NVE0	RL15_PONAB	No assigned EC number	0.6975	0.9948	0.9509	yes	no
O65050	RL15A_PICMA	No assigned EC number	0.8480	1.0	0.9558	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_400015	hypothetical protein (204 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_X1707	RecName- Full=60S acidic ribosomal protein P0; (321 aa)			•	•	•		•		0.646
	estExt_fgenesh4_pm.C_LG_VIII0253	RecName- Full=60S acidic ribosomal protein P0; (323 aa)			•	•	•		•		0.644
	fgenesh4_pg.C_LG_VI001257	SubName- Full=Putative uncharacterized protein; (180 aa)			•	•	•		•		0.626
	grail3.0071003601	SubName- Full=Putative uncharacterized protein; (181 aa)			•	•	•		•		0.625
	estExt_fgenesh4_pg.C_LG_VI1248	SubName- Full=Putative uncharacterized protein; (181 aa)			•	•	•		•		0.625
	estExt_Genewise1_v1.C_LG_XI3222	SubName- Full=Putative uncharacterized protein; (181 aa)			•	•	•		•		0.625
	estExt_Genewise1_v1.C_LG_VI2460	RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (94 aa)				•			•		0.623
	estExt_Genewise1_v1.C_LG_III1727	RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (96 aa)				•			•		0.622
	estExt_Genewise1_v1.C_LG_I0199	RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (96 aa)				•			•		0.622
	grail3.0007017402	RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (113 aa)				•			•		0.587

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam00827	192	pfam00827, Ribosomal_L15e, Ribosomal L15	1e-105
PTZ00026	204	PTZ00026, PTZ00026, 60S ribosomal protein L15; Pro	1e-104
COG1632	195	COG1632, RPL15A, Ribosomal protein L15E [Translati	3e-63
PRK04243	196	PRK04243, PRK04243, 50S ribosomal protein L15e; Va	5e-58

>gnl|CDD|144426 pfam00827, Ribosomal_L15e, Ribosomal L15

 Score =  301 bits (772), Expect = e-105
 Identities = 143/192 (74%), Positives = 155/192 (80%), Gaps = 9/192 (4%)

Query: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
           GAYKY+ ELW+KKQSDVMRFL RVRCWEYRQ P+IVRV RPTRPDKARRLGYKAKQGYV+
Sbjct: 1   GAYKYIRELWKKKQSDVMRFLLRVRCWEYRQLPAIVRVERPTRPDKARRLGYKAKQGYVI 60

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------- 114
           YRVRVRRGGRKRP PKG  YGKP   GV +LK  +S +S+AEERAGRK   L+       
Sbjct: 61  YRVRVRRGGRKRPRPKGGRYGKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWV 120

Query: 115 --DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLH 172
             D TYKY+EVILVD +H AIRNDPRINWICKPVHKHRE RGLTSAG+K RGLRGKGH  
Sbjct: 121 GQDGTYKYYEVILVDPSHPAIRNDPRINWICKPVHKHREFRGLTSAGRKSRGLRGKGHGT 180

Query: 173 HKARPSRRATWK 184
            K RPS RA WK
Sbjct: 181 EKTRPSIRANWK 192

Length = 192

>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional

 Score =  296 bits (760), Expect = e-104
 Identities = 150/204 (73%), Positives = 166/204 (81%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY++ELW+KKQSDVMRFL RVR WEYRQ P I RV+RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           +YRVRVRRGGRKRPV KGIVYGKP  QGV +LK  R+ R+VAEER G++ G L+      
Sbjct: 61  IYRVRVRRGGRKRPVRKGIVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYK++EVILVD  HNAIRNDPRINWIC PVHKHRELRGLTSAG+K RGLR KGH 
Sbjct: 121 VGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRELRGLTSAGRKSRGLRVKGHR 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
             K RPSRRA WKR   + LRRYR
Sbjct: 181 ASKLRPSRRANWKRRNRIVLRRYR 204

Length = 204

>gnl|CDD|224547 COG1632, RPL15A, Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

 Score =  193 bits (493), Expect = 3e-63
 Identities = 112/204 (54%), Positives = 134/204 (65%), Gaps = 20/204 (9%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
             AYKY+ E W+K +  V+R L R R  E+R+ PSIVR+ RPTR D+AR LGYKAKQGYV
Sbjct: 2   RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYV 61

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL------- 113
           V RVRVRRGGR R  PK     +PT  GV ++K ++S + +AEERAGRK   L       
Sbjct: 62  VVRVRVRRGGRNRKRPKK--GRRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYW 119

Query: 114 --KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
             +D  YKYFEVILVD  H AI+NDP +NWIC+PVHK R  RGLTSAGKK RGLR  G  
Sbjct: 120 VGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRVFRGLTSAGKKSRGLRKGG-- 177

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
                  + A  KR  T +L+RYR
Sbjct: 178 -------KGAEKKRPSTRALQRYR 194

Length = 195

>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated

 Score =  180 bits (459), Expect = 5e-58
 Identities = 96/194 (49%), Positives = 122/194 (62%), Gaps = 11/194 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           M  Y Y+ E W++ +   +  L   R  E+R+ P++VR+ RPTR D+AR LGYKAKQG V
Sbjct: 3   MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIV 62

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           V RVRVRRGG ++P PKG    +P   GV ++   +S + +AEERA RK   L+      
Sbjct: 63  VVRVRVRRGGLRKPRPKG--GRRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              D  YK++EVILVD  H AI+NDP +NWIC   H+ R  RGLTSAGKK RGLR KG  
Sbjct: 121 VGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRVFRGLTSAGKKGRGLRKKGKG 180

Query: 172 HHKARPSRRATWKR 185
             K RPS RA  +R
Sbjct: 181 TEKVRPSIRANERR 194

Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PTZ00026	204	60S ribosomal protein L15; Provisional	100.0
KOG1678	204	consensus 60s ribosomal protein L15 [Translation,	100.0
PF00827	192	Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439	100.0
PRK04243	196	50S ribosomal protein L15e; Validated	100.0
COG1632	195	RPL15A Ribosomal protein L15E [Translation, riboso	100.0

>PTZ00026 60S ribosomal protein L15; Provisional

Probab=100.00  E-value=4e-110  Score=706.74  Aligned_cols=195  Identities=77%  Similarity=1.275  Sum_probs=194.4

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||++||+++|+|+|+|
T Consensus         1 Mg~Y~yi~e~wkkkqsd~~r~l~r~R~we~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~~   80 (204)
T PTZ00026          1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV   80 (204)
T ss_pred             CcHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEcCCCCChhHHHHcCCcccceEEEEEEEEeeCCCCCCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                      ||||++||||+||+++|||+|||||||++||||         |||+|||||||||||+||||++||+|||||+|+|||||
T Consensus        81 ~gkpk~~Gv~~lk~~kslq~iAEeRv~rk~~nLrVLNSYWV~qDg~yK~yEVILvDp~H~aIr~Dp~~nWI~~~~hk~Re  160 (204)
T PTZ00026         81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRE  160 (204)
T ss_pred             CCCccccCccccCcchhHHHHHHHHhhccCCCcEEecceeEcCCCCcccEEEEEecCCCccceeCcccceecccccchhh
Confidence            999999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhccCeeEEeecC
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR  195 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~nt~~l~r~r  195 (195)
                      ||||||||+|+|||++|||+++|++||++|+|+++|||+|+|||
T Consensus       161 ~RGLTsAGkK~RGL~~kG~~~~k~r~s~ra~~~r~n~~~l~r~r  204 (204)
T PTZ00026        161 LRGLTSAGRKSRGLRVKGHRASKLRPSRRANWKRRNRIVLRRYR  204 (204)
T ss_pred             hccccccccccCCcCCCCCCcccCCcchhhhhhhccceeeEecC
Confidence            99999999999999999999999999999999999999999997

>KOG1678 consensus 60s ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.7e-109  Score=691.10  Aligned_cols=194  Identities=82%  Similarity=1.325  Sum_probs=193.1

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+++|||||||+++|||+++||||||||+||||||||||||||||++||+|+|+|||.|
T Consensus         1 MgAykY~~El~rkKQSDvmrfLlRvr~weYrQ~~~~hr~~rPtrpdkARrLGYkAKQG~viYrirVrrG~rKrpvpkG~t   80 (204)
T KOG1678|consen    1 MGAYKYLQELWRKKQSDVMRFLLRVRCWEYRQLSAIHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT   80 (204)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHhccccccceeEEEEEEEecCCccCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                      ||||+++|||||||++|+|++||||||++|+||         ||++|||||||||||+|.||++||+|||||+|||||||
T Consensus        81 yGKp~~~GvnqlK~~rs~qs~AEer~Gr~~g~LrVlNSYWv~qDstYk~fEVIlvDp~h~aIRrdp~~nwI~kpvhKhRE  160 (204)
T KOG1678|consen   81 YGKPVNQGVNQLKFQRSLQSVAEERAGRRCGNLRVLNSYWVNQDSTYKYFEVILVDPFHKAIRRDPRINWICKPVHKHRE  160 (204)
T ss_pred             cCCccccchhhhhhhHHHHHHHHHHhhccccceeeeehhhccCccceeeEEEEEECcHHHHHhcCCCcccccchhhhhHH
Confidence            999999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccC-CCchhhhhccCeeEEeecC
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKAR-PSRRATWKRNQTLSLRRYR  195 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r-~S~ra~w~r~nt~~l~r~r  195 (195)
                      +|||||||+||||| ||||+|++|+ +|++|+|+++|||+|+|||
T Consensus       161 ~rGLTsagkksrGl-gKg~kf~~t~~gs~ra~Wkr~ntl~l~ryr  204 (204)
T KOG1678|consen  161 LRGLTSAGKKSRGL-GKGHKFNKTIGGSRRATWKRRNTLSLHRYR  204 (204)
T ss_pred             hcccccccccccCc-ccccccccCCCchhHHHHhhcccceeeecC
Confidence            99999999999999 9999999999 8899999999999999997

>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.3e-105  Score=670.17  Aligned_cols=183  Identities=77%  Similarity=1.258  Sum_probs=170.4

Q ss_pred             chHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCccc
Q 029295            2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (195)
Q Consensus         2 g~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~~   81 (195)
                      |||+||+|+|++||||+|+||+++|||||||+|+|+||++||||||||+||||||||||||||+|++||+++|+|+|++|
T Consensus         1 g~Ykyi~e~wk~k~~d~~~~l~r~R~~e~R~~~av~Ri~rPtR~dkAR~LGYKAKQG~vv~RvrVrrGgrkr~~~kg~~~   80 (192)
T PF00827_consen    1 GAYKYIRELWKKKQSDVMRFLLRIRLWEWRQLPAVHRIERPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPRPKGGRY   80 (192)
T ss_dssp             -SHHHHHHHHHTTTSHHHHHHHHHHHHHHHHS-SEEEESS-SSHHHHHHTT-SSSTTEEEEEEEEESSS---SSSSSSST
T ss_pred             CHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEECCCCCCccHHHHcCCccCCeEEEEEEEEecCCCCCcccCCccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCcccccc
Q 029295           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHREL  152 (195)
Q Consensus        82 ~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re~  152 (195)
                      |||++||||+||+++|||+|||||||++||||         |||+|||||||||||+||+|+|||+|||||+|+||||||
T Consensus        81 gKPk~~Gv~~~k~~kslq~iAEeRagrk~~nLrVLnSYwV~eDg~yK~fEVIlVDp~h~~Ir~D~~~nWI~~~~hk~R~~  160 (192)
T PF00827_consen   81 GKPKHQGVNQLKPAKSLQSIAEERAGRKYPNLRVLNSYWVGEDGTYKWFEVILVDPNHPAIRNDPDINWICNPVHKHREF  160 (192)
T ss_dssp             SSCGGSSSTSS--SS-HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHTTTTTGGGGSGGGTTTTT
T ss_pred             cccccceeeccCccccHHHHhhhhhccccCCceEEeeEEeCCCCcceeEEEEEecCCcHHHhcCCccceecccccCcccc
Confidence            99999999999999999999999999999999         999999999999999999999999999999999999999


Q ss_pred             cCCccccccccCCCCCCCcccccCCCchhhhh
Q 029295          153 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWK  184 (195)
Q Consensus       153 RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~  184 (195)
                      |||||||+|+|||++|||+++|++||++|||+
T Consensus       161 RGLTsAgkk~RGL~~kG~~~~k~rpS~ra~wk  192 (192)
T PF00827_consen  161 RGLTSAGKKSRGLRGKGHGAEKTRPSRRANWK  192 (192)
T ss_dssp             TTTSHHHHHHTTTT-SSTTCGGTSSTTTTTCC
T ss_pred             ccccchhhhhcccccCccccccCCcccccccC
Confidence            99999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....

>PRK04243 50S ribosomal protein L15e; Validated

Probab=100.00  E-value=2.1e-102  Score=656.44  Aligned_cols=183  Identities=52%  Similarity=0.867  Sum_probs=181.1

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+||||++|||||+||+|||||||||||||||||+||+++|+|+|+ 
T Consensus         3 m~~Y~yi~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Rv~rPTR~DrAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~-   81 (196)
T PRK04243          3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGG-   81 (196)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHHHHHhccCceEEcCCCCChhHHHHcCccccceEEEEEEEeccCCCCCCCcCCC-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                       +||++||||+|||++|||+|||||||++||||         |||+|||||||||||+||+|++||+|||||+|+|||||
T Consensus        82 -~kPk~~Gv~~lk~~kslq~iAEERa~rk~~nlrVLNSYwV~qDg~yK~fEVIlVDp~H~aIr~Dp~~nWI~~~~~k~R~  160 (196)
T PRK04243         82 -RRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRV  160 (196)
T ss_pred             -CCccccCccccchhhhHHHHHHHHhhccCCCcEeeeeeEeccCCCcccEEEEEecCCCcchhcCcccceecccccchhh
Confidence             99999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhc
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR  185 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r  185 (195)
                      ||||||||+|+|||++|||+++|++||.+|+-++
T Consensus       161 ~RGLTSAGkK~RGl~~kg~~~~k~rps~ra~~~~  194 (196)
T PRK04243        161 FRGLTSAGKKGRGLRKKGKGTEKVRPSIRANERR  194 (196)
T ss_pred             hhcccccccccccccccCCCceecCccccccccc
Confidence            9999999999999999999999999999998764

>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.2e-83  Score=537.43  Aligned_cols=184  Identities=60%  Similarity=0.939  Sum_probs=180.3

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||.|+|++++++++.+|+++|+|+||++|+|+||++|||+|+||.||||||||||||||+|++||+.+++|+++ 
T Consensus         2 ~~~y~yv~e~wkk~~~~~~~~l~~~r~~~wR~~~~i~R~erPTrldrAR~LGykaKqG~vvvrvrVrrG~~~~~r~~~g-   80 (195)
T COG1632           2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKKG-   80 (195)
T ss_pred             ccHHHHHHHHHhCchHHHHhHHHhHHHHhhccCCceEEecCCCHHHHHHhcCCcccCceEEEEEeeecccccCcCccCC-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                       ++|++||||++++++|+|.|||||||++||||         |||.|||||||||||+||||+|||+|||||+++|+||+
T Consensus        81 -rrp~~mgvnki~~~ks~~~iAEerA~RK~pNL~vLnSYwVgeDg~yK~fEvIlvDp~H~aIk~Dp~l~wI~~~~~kgR~  159 (195)
T COG1632          81 -RRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRV  159 (195)
T ss_pred             -CCcCcccccccChhhhHHHHHHHHhhccCCCcEeeeeEEeccccceeeEEEEEecCCChhhcCCCceeeecccccCCce
Confidence             89999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhcc
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN  186 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~  186 (195)
                      ||||||||+|+|||+.+|.++++.+||.+|+++.+
T Consensus       160 ~RgltsagkK~rgl~k~~k~~~~~R~~~~~~~~~~  194 (195)
T COG1632         160 FRGLTSAGKKSRGLRKGGKGAEKKRPSTRALQRYR  194 (195)
T ss_pred             eccccccchhhhhhhccCCcccccCcchhhhhhhc
Confidence            99999999999999888899999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
3izr_P	204	Localization Of The Large Subunit Ribosomal Protein		4e-87
2zkr_m	204	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-60
3izs_P	204	Localization Of The Large Subunit Ribosomal Protein		4e-60
1s1i_L	203	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-59
4a17_L	204	T.Thermophila 60s Ribosomal Subunit In Complex With		6e-58
3jyw_L	192	Structure Of The 60s Proteins For Eukaryotic Riboso		4e-56
3zf7_Q	221	High-resolution Cryo-electron Microscopy Structure		3e-48
3j21_M	194	Promiscuous Behavior Of Proteins In Archaeal Riboso		9e-29
1jj2_L	194	Fully Refined Crystal Structure Of The Haloarcula M		6e-25
3cc2_M	196	The Refined Crystal Structure Of The Haloarcula Mar		6e-24
3g4s_M	194	Co-Crystal Structure Of Tiamulin Bound To The Large		7e-24
1vq9_M	195	The Structure Of Cca-Phe-Cap-Bio And The Antibiotic		8e-24
1yi2_M	195	Crystal Structure Of Erythromycin Bound To The G209		9e-24
1s72_M	194	Refined Crystal Structure Of The Haloarcula Marismo		9e-24
1yhq_M	194	Crystal Structure Of Azithromycin Bound To The G209		9e-24
2qa4_M	196	A More Complete Structure Of The The L7L12 STALK OF		1e-23
1ffk_I	194	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-22

>pdb|3IZR|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  316 bits (810), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 170/204 (83%), Gaps = 9/204 (4%)
Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAYKYVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                             IVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+      
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFE+ILVD AH+AIRNDPRINW+CKPVHKHRELRGLTSAGKKYRGLRGKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
           HHKARPSRRATWKRNQT+SLRRYR
Sbjct: 181 HHKARPSRRATWKRNQTVSLRRYR 204

>pdb|2ZKR|MM Chain m, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204

Iteration: 1
 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/205 (60%), Positives = 137/205 (66%), Gaps = 11/205 (5%)
Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                               YGKP + GV QLKF RS +SVAEERAGR  G L+      
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH- 170
              DSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH 
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHK 179
Query: 171 LHHKARPSRRATWKRNQTLSLRRYR 195
            HH    SRRA W+R  TL L RYR
Sbjct: 180 FHHTIGGSRRAAWRRRNTLQLHRYR 204

>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  227 bits (578), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 134/204 (65%), Gaps = 10/204 (4%)
Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAYKY+ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                               YGKPTNQGV +LK+QRS R+ AEER GR+   L+      
Sbjct: 61  IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW 120
Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH 
Sbjct: 121 VNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHK 179
Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
            +  +  RR TWKR  TLSL RYR
Sbjct: 180 FNNTKAGRRKTWKRQNTLSLWRYR 203

>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 203

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/203 (60%), Positives = 133/203 (65%), Gaps = 10/203 (4%)
Query: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXX 61
           GAYKY+ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ    
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60
Query: 62  XXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------- 114
                              YGKPTNQGV +LK+QRS R+ AEER GR+   L+       
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120
Query: 115 --DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLH 172
             DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  
Sbjct: 121 NQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKF 179
Query: 173 HKARPSRRATWKRNQTLSLRRYR 195
           +  +  RR TWKR  TLSL RYR
Sbjct: 180 NNTKAGRRKTWKRQNTLSLWRYR 202

>pdb|4A17|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 204

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 136/204 (66%), Gaps = 9/204 (4%)
Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAYKY+ ELWRKKQSD+M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K    
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                             IVYGKP++ G+ QLKF R+ RS AEER G+++  L+      
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120
Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              D TYK++EVIL D +HNAIRNDPRINWIC+  HKHRELRGLTSAG+K RGLR KGH 
Sbjct: 121 VGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHR 180
Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
               R SR+  W+  Q L LRRYR
Sbjct: 181 AKSLRTSRKGNWRARQMLKLRRYR 204

>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 192

Iteration: 1
 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 126/193 (65%), Gaps = 10/193 (5%)
Query: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXX 61
           GAYKY+ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ    
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60
Query: 62  XXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------- 114
                              YGKPTNQGV +LK+QRS R+ AEER GR+   L+       
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120
Query: 115 --DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLH 172
             DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  
Sbjct: 121 NQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKF 179
Query: 173 HKARPSRRATWKR 185
           +  +  RR TWKR
Sbjct: 180 NNTKAGRRKTWKR 192

>pdb|3ZF7|Q Chain Q, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 221

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 119/187 (63%), Gaps = 9/187 (4%)
Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MG++ Y++ELW+KK SDVMRF+QRVR WE+R   +IVR+ RPTRP+KAR +GYK KQ   
Sbjct: 18  MGSFMYLNELWKKKSSDVMRFIQRVRAWEFRHQHTIVRLRRPTRPEKARMVGYKTKQGYV 77
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                             I YGKP   GV   K  ++ R VAE+R G+K G L+      
Sbjct: 78  VFRVRVRRGGRKRPVHKGITYGKPNTAGVLGRKLNKNNRVVAEQRLGKKYGNLRVLNSYW 137
Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              DST+ ++EV+ VD  H AIR DPRINWI   VHKHRE RGLTSAG+K+RGLR KGH 
Sbjct: 138 VNADSTFLWYEVVAVDPMHRAIRRDPRINWIVNAVHKHREQRGLTSAGRKHRGLRQKGHK 197
Query: 172 HHKARPS 178
             K RPS
Sbjct: 198 ASKLRPS 204

>pdb|3J21|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 194

Iteration: 1
 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 102/191 (53%), Gaps = 11/191 (5%)
Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ   
Sbjct: 1   MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
                                 KP+  G  +   ++S + +AEE+A RK   L+      
Sbjct: 61  IVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYW 118
Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              D  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG  
Sbjct: 119 VGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKG 178
Query: 172 HHKARPSRRAT 182
             K RPS RA 
Sbjct: 179 AEKVRPSIRAN 189

>pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ E W++ +   +  L   R  E+R  P++VR+ RPTR D+AR LGYKAKQ     
Sbjct: 4   AYSYIREAWKRPKEGQIAELMWHRMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIVV 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K     V ++  +++ + +AEERA RK   L+        
Sbjct: 64  RVAIRKGSSRRTRFNKGRRSK--RMMVNRITRKKNIQRIAEERANRKFPNLRVLNSYSVG 121
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D  +K+ EVIL+D  H AI++D +++WI +  H+ R  RGLTSAG++ RGLRG+G    
Sbjct: 122 EDGRHKWHEVILIDPDHPAIKSDDQLSWISRTRHRLRTFRGLTSAGRRCRGLRGQGKGSE 181
Query: 174 KARPSRRAT 182
           K RPS R  
Sbjct: 182 KVRPSLRVN 190

>pdb|3CC2|M Chain M, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 196

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|3G4S|M Chain M, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 194

Iteration: 1
 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 122 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 181
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 182 KTRPSLRSN 190

>pdb|1VQ9|M Chain M, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score =  106 bits (264), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|1YI2|M Chain M, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|1S72|M Chain M, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 122 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 181
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 182 KTRPSLRSN 190

>pdb|1YHQ|M Chain M, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 194

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 122 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 181
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 182 KTRPSLRSN 190

>pdb|2QA4|M Chain M, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 196

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 3   AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK-------- 114
                               K   QGVT++  ++  + VAEERA R    L+        
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 115 -DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHH 173
            D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    
Sbjct: 123 QDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSE 182
Query: 174 KARPSRRAT 182
           K RPS R+ 
Sbjct: 183 KTRPSLRSN 191

>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 27/198 (13%)
Query: 4   YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXX 63
           Y Y+ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+      
Sbjct: 5   YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVR 64
Query: 64  XXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRS-------VAEERAGRKLGGLK-- 114
                                 N+G    K   ++R        +AEERA RK   ++  
Sbjct: 65  VRIRRGGRRATR---------PNKGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVL 115
Query: 115 -------DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG 167
                  D  YK+FEVILVD  H AI++DP+++W+ +   + R  RGLTSAG+K RGLR 
Sbjct: 116 NSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRR 173
Query: 168 KGHLHHKARPSRRATWKR 185
           KG    K RPS RA +++
Sbjct: 174 KGRGAEKVRPSLRANFRK 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	4e-86
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	1e-85
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	2e-80
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	3e-79
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	1e-74

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L Length = 204

 Score =  250 bits (640), Expect = 1e-85
 Identities = 130/204 (63%), Positives = 155/204 (75%), Gaps = 9/204 (4%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELWRKKQSD+M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K GY 
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           ++RVRVRRGGRKRPV KGIVYGKP++ G+ QLKF R+ RS AEER G+++  L+      
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              D TYK++EVIL D +HNAIRNDPRINWIC+  HKHRELRGLTSAG+K RGLR KGH 
Sbjct: 121 VGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHR 180

Query: 172 HHKARPSRRATWKRNQTLSLRRYR 195
               R SR+  W+  Q L LRRYR
Sbjct: 181 AKSLRTSRKGNWRARQMLKLRRYR 204

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 1s1i_L Length = 192

 Score =  236 bits (603), Expect = 2e-80
 Identities = 133/193 (68%), Positives = 146/193 (75%), Gaps = 10/193 (5%)

Query: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
           GAYKY+ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V+
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL-------- 113
           YRVRVRRG RKRPVPKG  YGKPTNQGV +LK+QRS R+ AEER GR+   L        
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120

Query: 114 -KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLH 172
            +DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  
Sbjct: 121 NQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKF 179

Query: 173 HKARPSRRATWKR 185
           +  +  RR TWKR
Sbjct: 180 NNTKAGRRKTWKR 192

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ... Length = 194

 Score =  234 bits (597), Expect = 3e-79
 Identities = 77/194 (39%), Positives = 104/194 (53%), Gaps = 11/194 (5%)

Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
             AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +
Sbjct: 2   RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVI 61

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------ 114
           V RV VR+G  ++   K     +   QGVT++  ++  + VAEERA R    L+      
Sbjct: 62  VARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYS 119

Query: 115 ---DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 171
              D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG  
Sbjct: 120 VGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKG 179

Query: 172 HHKARPSRRATWKR 185
             K RPS R+   +
Sbjct: 180 SEKTRPSLRSNGGK 193

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2 Length = 194

 Score =  222 bits (566), Expect = 1e-74
 Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 13/195 (6%)

Query: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
             Y Y+ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+G +V
Sbjct: 3   SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIV 62

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL-------- 113
            RVR+RRGGR+   P      K     V +   +++ + +AEERA RK   +        
Sbjct: 63  VRVRIRRGGRRATRPNK--GRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWV 120

Query: 114 -KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLH 172
            +D  YK+FEVILVD  H AI++DP+++W+ +   + R  RGLTSAG+K RGLR KG   
Sbjct: 121 GEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKGRGA 178

Query: 173 HKARPSRRATWKRNQ 187
            K RPS RA +++ +
Sbjct: 179 EKVRPSLRANFRKKR 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	100.0
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	100.0
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	100.0
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	100.0
3j21_M	194	50S ribosomal protein L15E; archaea, archaeal, KIN	100.0
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	100.0

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L

Probab=100.00  E-value=1.1e-113  Score=727.15  Aligned_cols=195  Identities=67%  Similarity=1.172  Sum_probs=193.5

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+|
T Consensus         1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~   80 (204)
T 4a17_L            1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIV   80 (204)
T ss_dssp             -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCC
T ss_pred             CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                      ||||++||||+|||++|||+|||||||++||||         |||+|||||||||||+||||++||+|||||+|+|||||
T Consensus        81 ~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re  160 (204)
T 4a17_L           81 YGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRE  160 (204)
T ss_dssp             CSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTTTT
T ss_pred             ccCcccccccccCcchhHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhcccc
Confidence            999999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhccCeeEEeecC
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR  195 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~nt~~l~r~r  195 (195)
                      ||||||||+|+|||++|||+++|++||++|||+++|||+|+|||
T Consensus       161 ~RGLTsAGkk~RGLr~kG~~~~k~r~s~ra~w~r~ntl~l~r~r  204 (204)
T 4a17_L          161 LRGLTSAGRKGRGLRVKGHRAKSLRTSRKGNWRARQMLKLRRYR  204 (204)
T ss_dssp             TTTCSHHHHHHTTTTCCSTTTGGGTTTHHHHHHHHHCCCCCSCC
T ss_pred             ccCcccccccccccCCCCCCcccCCcchhhhhhccceeeeEecC
Confidence            99999999999999999999999999999999999999999997

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L

Probab=100.00  E-value=2.8e-107  Score=683.15  Aligned_cols=183  Identities=73%  Similarity=1.208  Sum_probs=181.9

Q ss_pred             chHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCccc
Q 029295            2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (195)
Q Consensus         2 g~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~~   81 (195)
                      |||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+||
T Consensus         1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~   80 (192)
T 3jyw_L            1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATY   80 (192)
T ss_dssp             CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSC
T ss_pred             CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeECCCCCCccCCCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCcccccc
Q 029295           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHREL  152 (195)
Q Consensus        82 ~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re~  152 (195)
                      |||++||||+|||++|||+|||||||++||||         |||+|||||||||||+||||+|||+|||||+|+||||||
T Consensus        81 gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~  160 (192)
T 3jyw_L           81 GKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREA  160 (192)
T ss_dssp             SSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSSTTT
T ss_pred             cCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccc
Confidence            99999999999999999999999999999999         999999999999999999999999999999999999999


Q ss_pred             cCCccccccccCCCCCCCcccccCCCchhhhhc
Q 029295          153 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR  185 (195)
Q Consensus       153 RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r  185 (195)
                      |||||||+|+||| +|||+++|++||++|||++
T Consensus       161 RGLTsAGkk~RGL-~kG~~~~k~~~s~ra~w~r  192 (192)
T 3jyw_L          161 RGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR  192 (192)
T ss_dssp             TTCSTTGGGGTCC-CCSSTTSSSSSCHHHHTCC
T ss_pred             cCCcccccccccc-CCCcCcccCCCcccccccC
Confidence            9999999999999 9999999999999999986

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...

Probab=100.00  E-value=4.9e-106  Score=676.24  Aligned_cols=183  Identities=42%  Similarity=0.678  Sum_probs=182.0

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+||||||||||||||||||||+++|+|+|+ 
T Consensus         2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~-   80 (194)
T 1vq8_M            2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG-   80 (194)
T ss_dssp             CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred             ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                       |||++||||+|||++|||+|||||||++||||         |||+|||||||||||+||||+|||+|||||+|+|||||
T Consensus        81 -~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re  159 (194)
T 1vq8_M           81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRV  159 (194)
T ss_dssp             -CCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGG
T ss_pred             -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccCcccccch
Confidence             99999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhc
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR  185 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r  185 (195)
                      ||||||||+|+|||++|||+++|++||++|+|++
T Consensus       160 ~RGLTsaGkk~RGL~~kG~~~~k~~~~~ra~w~~  193 (194)
T 1vq8_M          160 FRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK  193 (194)
T ss_dssp             GGTCSHHHHHHTTCSCSSTTCTTTSSCTTTTTSC
T ss_pred             hccccccccccCccCCCCCCcccCCcccchhhcc
Confidence            9999999999999999999999999999999986

>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.2e-105  Score=674.16  Aligned_cols=184  Identities=51%  Similarity=0.822  Sum_probs=182.5

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+ 
T Consensus         1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~-   79 (194)
T 3j21_M            1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG-   79 (194)
T ss_dssp             CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC-
T ss_pred             CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEEeeCCCCCCCcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                       +||++||||+|||++|||+|||||||++||||         |||+|||||||||||+||||+|||+|||||+|+|||||
T Consensus        80 -~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re  158 (194)
T 3j21_M           80 -RKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRV  158 (194)
T ss_dssp             -CCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHH
T ss_pred             -CCcccccccccCccccHHHHHHHHHhccCCCceeeeceeecCCCCceeEEEEEEcCCChhhccCCcccccccccccccc
Confidence             99999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhcc
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN  186 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~  186 (195)
                      ||||||||+|+|||++|||+++|++||++|||++.
T Consensus       159 ~RGLTsAGkk~RGL~~kG~~~~k~rps~ra~~~~~  193 (194)
T 3j21_M          159 FRGLTSAGKKGRGLRNKGKGAEKVRPSIRANEGKG  193 (194)
T ss_dssp             HHCCSHHHHHHHTTTCSSTTCSSSSSCSTTSSSCC
T ss_pred             ccCccccccccccccccCCcccccCcccccccccC
Confidence            99999999999999999999999999999999863

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2

Probab=100.00  E-value=3.9e-104  Score=664.71  Aligned_cols=182  Identities=44%  Similarity=0.752  Sum_probs=180.7

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+ 
T Consensus         2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~-   80 (194)
T 1ffk_I            2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG-   80 (194)
T ss_pred             ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                       |||++||||+|||++|||+|||||||++||||         |||+|||||||||||+||||+|||+|||||+  |||||
T Consensus        81 -~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~Re  157 (194)
T 1ffk_I           81 -RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRV  157 (194)
T ss_pred             -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccc--cccch
Confidence             99999999999999999999999999999999         9999999999999999999999999999999  99999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhcc
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN  186 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~  186 (195)
                      ||||||||+|+|||++|||+++|++||++|+|++.
T Consensus       158 ~RGLTsaGkk~RGL~~kG~~~~k~~~~~ra~w~r~  192 (194)
T 1ffk_I          158 YRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKK  192 (194)
T ss_pred             hccccccccccCccCCCCCCcccCCcchhhhhhhc
Confidence            99999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1vqom1	194	d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeo	6e-87

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 194

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  252 bits (645), Expect = 6e-87
 Identities = 77/193 (39%), Positives = 104/193 (53%), Gaps = 11/193 (5%)

Query: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
            AY Y+ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +V
Sbjct: 3   SAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIV 62

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLK------- 114
            RV VR+G  ++   K     +   QGVT++  ++  + VAEERA R    L+       
Sbjct: 63  ARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSV 120

Query: 115 --DSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLH 172
             D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG   
Sbjct: 121 GQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGS 180

Query: 173 HKARPSRRATWKR 185
            K RPS R+   +
Sbjct: 181 EKTRPSLRSNGGK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1vqom1	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1ffki_	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1e-102  Score=653.88  Aligned_cols=183  Identities=42%  Similarity=0.678  Sum_probs=181.3

Q ss_pred             CchHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCcc
Q 029295            1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (195)
Q Consensus         1 mg~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~   80 (195)
                      +|||+||+|+|++||||+|+||+|+|||||||+|+||||++|||||+||+||||||||||||||||++||+++|+|+|+ 
T Consensus         2 ~saY~Yv~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Ri~rPtR~DrAR~LGYKAKqG~vi~RvRVRrGg~kr~~~kg~-   80 (194)
T d1vqom1           2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG-   80 (194)
T ss_dssp             CCHHHHHHHHTTCTTSHHHHHHHHHHHHHHTTSCSEEEESSCTTHHHHHHTTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCchhHHHhcCcccCCcEEEEEEEEecCCCCCCCCCCC-
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCccccc
Q 029295           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRE  151 (195)
Q Consensus        81 ~~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re  151 (195)
                       ++|++||||+||+++|||+|||||||++||||         |||+|||||||||||+||+|++||+|||||+|+|||||
T Consensus        81 -~kpK~~Gv~~lk~~~~lq~iAEeRvgrk~~nLrVLNSYwV~qDg~yk~yEVILvDp~h~aIr~D~~~nWI~~~~hk~R~  159 (194)
T d1vqom1          81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRV  159 (194)
T ss_dssp             -CCGGGCCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEECSSEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGG
T ss_pred             -CCCCcCcccccCccccHHHHHHHHhcCcCCCcEeecceEecCCCceeEEEEEEecCCCcccccCCccccccCcccccch
Confidence             89999999999999999999999999999999         99999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCCcccccCCCchhhhhc
Q 029295          152 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR  185 (195)
Q Consensus       152 ~RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r  185 (195)
                      ||||||||+|+|||++|||+++|++||.+|||++
T Consensus       160 ~RGlTSAGkk~RGLr~kG~~~~k~rpS~ran~~r  193 (194)
T d1vqom1         160 FRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK  193 (194)
T ss_dssp             GGTCSHHHHHHTTCSCSSTTCTTTSSCTTTTTTC
T ss_pred             hcCCcccccccCCCCCCCCCcCcCCcccccccCC
Confidence            9999999999999999999999999999999986

>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.3e-101  Score=645.20  Aligned_cols=182  Identities=44%  Similarity=0.757  Sum_probs=180.4

Q ss_pred             chHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEeCCCCCchHHHhhccccccceEEEEEEeeecCCCCCccCCccc
Q 029295            2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (195)
Q Consensus         2 g~Y~Yi~e~wkk~~sd~~~~L~r~R~~e~Rq~~~v~Rv~rPTR~dkAR~LGYKAKQG~vv~RvrVRrGgrkrp~~kg~~~   81 (195)
                      |||+||+|+|++||||+|+||+|+|||||||+|+||||++|||||+||+||||||||||||||||++||+++|+|+++  
T Consensus         3 s~Y~yv~e~wkkkqsd~~~~l~r~R~~e~R~~~~i~Ri~rPTR~DrAR~LGYKAKQG~vi~RvRVRrGgrkr~~~~~g--   80 (194)
T d1ffki_           3 SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG--   80 (194)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCCccCceEEEEEEEeccCCCcCCCCCCC--
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCcccccccccccccchhHHHHHHhhhccCCC---------CCCCcceeEEEEeccCccccccCCCCcccccCCcccccc
Q 029295           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL---------KDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHREL  152 (195)
Q Consensus        82 ~kPk~~Gv~~lk~~kslq~iAEER~grk~~nL---------eDg~yK~fEVILVDp~H~aIr~Dp~inWI~~~~hk~Re~  152 (195)
                      ++|++||||+|++++|||+|||||||++||||         |||+|||||||||||+||+|++||+|||||+  ||||||
T Consensus        81 rrpk~~gv~~lk~~kslq~iAEERv~rk~~nLrVLNSYWV~qDg~~k~yEVIlVDp~h~aIr~D~~~nWI~~--~k~R~~  158 (194)
T d1ffki_          81 RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVY  158 (194)
T ss_pred             ccCCCCcccccCccccHHHHHHHHhhccCCCcEeeeeEEEcCCCceeEEEEEEecCCCcceeeCCCcCeeec--CCcchh
Confidence            89999999999999999999999999999999         9999999999999999999999999999997  999999


Q ss_pred             cCCccccccccCCCCCCCcccccCCCchhhhhccC
Q 029295          153 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ  187 (195)
Q Consensus       153 RGLTSAGkK~RGLr~kG~~~~k~r~S~ra~w~r~n  187 (195)
                      |||||||+|+|||+++|++++|++||.+|||+++|
T Consensus       159 RGlTSAGkk~RGL~~kg~~~~k~rpS~ra~~rr~n  193 (194)
T d1ffki_         159 RGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKR  193 (194)
T ss_pred             cCCcccccccCCCCCCCCCcCcCCcchhhhhhhcc
Confidence            99999999999999999999999999999999998