Citrus Sinensis ID: 029339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKGVPHRAPFGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHcccccEEEcccccEEEEccccEEEEEccEEEEEcccccccccccccccccccccccccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccHHccccccccccEEEEEcccccccHHccccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHccccccccEEEEEEEEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
Coil and Loop (DISEMBL)
MLRTAFFTVCRthgdaarsecnmycldcndqafcfycrsskhkdhqvIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFlnerpqprsgkgvaHICEICgrslldpfrfcslgcklagikrdgnasfTLEIKNEAFMERKEGISRQVSSRKQEELredsqhdiypptthkppssarrrkgvphrapfgs
Flexible Loop (DISEMBL)
MLRTAFFTVcrthgdaarsECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNerpqprsgkgvAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEafmerkegisrqvssrkqeelredsqhdiypptthkppssarrrkgvphrapfgs
Low Complexity Region (SEG)
MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKGVPHRAPFGS
Disordered region (IsUnstruct)
***TAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNER****SGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIK*********************************************************
Disordered Region (DISOPRED)
MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVF****************CEICGRSLLDPFRFCSLGCKLAG****************************************************************HRAPF**
Disordered Region (DISEMBL)
MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKE******************QHDIYPPT**********************
Disordered Region (DISPRO)
MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPR****VAHICEICGRSLLDPFRFCSLGCKLAGIKRDGN*****************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKGVPHRAPFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
P0CB19	110	Uncharacterized protein A	no	no	0.512	0.909	0.312	2e-05

>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana GN=At3g50808 PE=4 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 31/131 (23%)

Query: 68  MDISGVQTYVINSARVVFLNER---PQPRSGKGVAHICEICGRSL--LDPFRFCSLGCKL 122
           MDISG+  Y IN   +V++N+R      RS   V H C+IC   +       FCS+ CK 
Sbjct: 5   MDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSMECKF 64

Query: 123 AGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSAR 182
             +         L  + +  ME    ++         E+ E    +I  P   K      
Sbjct: 65  RSV---------LGSQLDELMENSSEVT---------EISE----EIDEPVMKK----RH 98

Query: 183 RRKGVPHRAPF 193
           RRKG PHRAPF
Sbjct: 99  RRKGSPHRAPF 109

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
356533371	208	PREDICTED: uncharacterized protein LOC10	0.989	0.927	0.792	3e-86
297740001	204	unnamed protein product [Vitis vinifera]	1.0	0.955	0.794	5e-85
356548377	209	PREDICTED: uncharacterized protein LOC10	0.989	0.923	0.788	1e-84
224069697	202	predicted protein [Populus trichocarpa]	0.974	0.940	0.8	5e-84
255556796	208	protein with unknown function [Ricinus c	1.0	0.937	0.778	1e-82
224138806	201	predicted protein [Populus trichocarpa]	0.974	0.945	0.791	6e-82
357440323	203	hypothetical protein MTR_1g062160 [Medic	0.974	0.935	0.731	6e-79
224054246	209	predicted protein [Populus trichocarpa]	1.0	0.933	0.700	6e-78
356570794	213	PREDICTED: uncharacterized protein LOC10	0.984	0.901	0.720	4e-77
357510907	206	hypothetical protein MTR_7g102790 [Medic	0.974	0.922	0.746	3e-76

>gi|356533371|ref|XP_003535238.1| PREDICTED: uncharacterized protein LOC100809455 [Glycine max]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 175/198 (88%), Gaps = 5/198 (2%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T+FF VCR HGDAARSECNM+CLDCN+ AFCFYCRSSKHKDHQVIQIRRSSYHDVVR
Sbjct: 13  LLNTSFFNVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 72

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRSLLDPFRFCSLGC
Sbjct: 73  VAEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGC 132

Query: 121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQ-VSSR--KQEELREDSQHDIYPPTTHKP 177
           KL GIKR+G+ASFTL+ KNEA     EG+SR+ VSSR  ++EELRE SQ D+YP T   P
Sbjct: 133 KLVGIKRNGDASFTLDAKNEA--STMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPP 190

Query: 178 PSSARRRKGVPHRAPFGS 195
            S+ARRRKG+PHRAPFGS
Sbjct: 191 ASNARRRKGIPHRAPFGS 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740001|emb|CBI30183.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 174/195 (89%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T FF++CRTHGDAARSECNMYCLDC+  +FCFYCRSS+HKDHQVIQIRRSSYHDVVR
Sbjct: 10  LLTTPFFSICRTHGDAARSECNMYCLDCSGDSFCFYCRSSRHKDHQVIQIRRSSYHDVVR 69

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FLNERPQP++GKGV+HICE CGRSLLDPFRFCSLGC
Sbjct: 70  VAEIQKVLDISGVQTYVINSARVLFLNERPQPKTGKGVSHICETCGRSLLDPFRFCSLGC 129

Query: 121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSS 180
           KL GIKR+G+ASF+LE KNE  MER EGISR+ SSR ++ELRE  Q DIYPPT   PPSS
Sbjct: 130 KLVGIKRNGDASFSLEAKNEMAMERGEGISRRESSRDEDELREGLQQDIYPPTPPPPPSS 189

Query: 181 ARRRKGVPHRAPFGS 195
           ARRRKG+PHRAPF S
Sbjct: 190 ARRRKGIPHRAPFAS 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548377|ref|XP_003542579.1| PREDICTED: uncharacterized protein LOC100779070 [Glycine max]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/199 (78%), Positives = 174/199 (87%), Gaps = 6/199 (3%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T+FF VCR HGDAARSECNM+CLDCN+ AFCFYCRSSKHKDHQVIQIRRSSYHDVVR
Sbjct: 13  LLNTSFFDVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 72

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRSLLDPFRFCSLGC
Sbjct: 73  VAEIQTVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGC 132

Query: 121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQ-VSSR--KQEELREDSQHDIYPPTTHKP 177
           KL GIKR+G+ASF L+ KNEA     EG+SR+ VSSR  ++EELRE SQ D+YP T   P
Sbjct: 133 KLVGIKRNGDASFALDAKNEA--STMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPP 190

Query: 178 PSS-ARRRKGVPHRAPFGS 195
            SS ARRRKG+PHRAPFGS
Sbjct: 191 ASSNARRRKGIPHRAPFGS 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069697|ref|XP_002326397.1| predicted protein [Populus trichocarpa] gi|222833590|gb|EEE72067.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 156/195 (80%), Positives = 171/195 (87%), Gaps = 5/195 (2%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T FFTVCRTH DAARSECNMYCLDC   AFCFYCRSS+HKDHQV+QIRRSSYHDVVR
Sbjct: 13  LLSTQFFTVCRTHEDAARSECNMYCLDCEGDAFCFYCRSSRHKDHQVVQIRRSSYHDVVR 72

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++D SGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRSLLDPFRFCSLGC
Sbjct: 73  VSEIQKVLDTSGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGC 132

Query: 121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSS 180
           KL G+KR+G+ASFTLE KNEA M R+EGIS +     +E+LRE SQ DIYPPT   PPSS
Sbjct: 133 KLEGVKRNGDASFTLEAKNEALMGRREGISGE-----EEDLREGSQQDIYPPTPPPPPSS 187

Query: 181 ARRRKGVPHRAPFGS 195
           ARRRKG+PHRAPFGS
Sbjct: 188 ARRRKGIPHRAPFGS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556796|ref|XP_002519431.1| protein with unknown function [Ricinus communis] gi|223541294|gb|EEF42845.1| protein with unknown function [Ricinus communis]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/199 (77%), Positives = 172/199 (86%), Gaps = 4/199 (2%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L TAFF++CRTHGDAARSECNMYCLDC   AFCFYCRSS+HKDHQVIQIRRSSYHDVVR
Sbjct: 10  LLSTAFFSICRTHGDAARSECNMYCLDCRGDAFCFYCRSSRHKDHQVIQIRRSSYHDVVR 69

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRSLLD FRFCSLGC
Sbjct: 70  VAEIQKVIDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDTFRFCSLGC 129

Query: 121 KLAGIKRDGNASFTLEIKN-EAFMERKEGISRQ--VSSRKQEELREDSQHDIY-PPTTHK 176
           K+ GIKR+G+ASF+LE KN E  MER+EGI+ +  VS R+ EELRE SQ DIY P     
Sbjct: 130 KVVGIKRNGDASFSLEAKNEEELMERREGITSRIVVSRREDEELREGSQQDIYPPTPPPP 189

Query: 177 PPSSARRRKGVPHRAPFGS 195
           P SSARRRKG+PHRAPF S
Sbjct: 190 PTSSARRRKGIPHRAPFKS 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138806|ref|XP_002322906.1| predicted protein [Populus trichocarpa] gi|222867536|gb|EEF04667.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 170/197 (86%), Gaps = 7/197 (3%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T+FFTVCRTHGDAAR+ECNMYCLDC   AFCFYCRSS+HKDHQVIQIRRSSYHDVVR
Sbjct: 10  LLSTSFFTVCRTHGDAARNECNMYCLDCEGGAFCFYCRSSRHKDHQVIQIRRSSYHDVVR 69

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FL ERPQP+ GKGVAHIC ICGRSLLDPFRFCSLGC
Sbjct: 70  VTEIQKVLDISGVQTYVINSARVLFLKERPQPKYGKGVAHICVICGRSLLDPFRFCSLGC 129

Query: 121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDS--QHDIYPPTTHKPP 178
           KL G+KR+G ASFT+E KNEA MER+EGI     SR +EELRE S  Q DIYPPT   P 
Sbjct: 130 KLVGVKRNGEASFTIEAKNEALMERREGI-----SRGEEELREGSQQQQDIYPPTPPPPS 184

Query: 179 SSARRRKGVPHRAPFGS 195
           SSARRRKG+PHRAPFGS
Sbjct: 185 SSARRRKGIPHRAPFGS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440323|ref|XP_003590439.1| hypothetical protein MTR_1g062160 [Medicago truncatula] gi|355479487|gb|AES60690.1| hypothetical protein MTR_1g062160 [Medicago truncatula]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 142/194 (73%), Positives = 158/194 (81%), Gaps = 4/194 (2%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T FF  CR H DAARSECNM+CLDCN  AFCFYCRSSKHKDHQVIQIRRSSYHDVVR
Sbjct: 13  LLSTPFFNECRIHADAARSECNMFCLDCNVDAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 72

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FLNERPQP+SGK V +ICEICGR LLD  RFCSLGC
Sbjct: 73  VAEIQKMLDISGVQTYVINSARVLFLNERPQPKSGKAVPYICEICGRGLLDQVRFCSLGC 132

Query: 121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSS 180
           KL GIKR+GNASF L+  N      +EG+SRQ    ++EELRE SQ  +YP T   PPS+
Sbjct: 133 KLVGIKRNGNASFVLDANNNEVSTMEEGMSRQ----QEEELREGSQQGMYPATPPTPPSN 188

Query: 181 ARRRKGVPHRAPFG 194
           ARRRKG+PHRAPFG
Sbjct: 189 ARRRKGIPHRAPFG 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054246|ref|XP_002298164.1| predicted protein [Populus trichocarpa] gi|222845422|gb|EEE82969.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 138/197 (70%), Positives = 164/197 (83%), Gaps = 2/197 (1%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L TAFFTVC  H DA RSECNM+CLDCN +AFCFYCRS++HKDH VIQIRRSSYHDVVR
Sbjct: 13  LLSTAFFTVCPRHRDAPRSECNMFCLDCNTEAFCFYCRSTRHKDHSVIQIRRSSYHDVVR 72

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRS--GKGVAHICEICGRSLLDPFRFCSL 118
           V EIQ ++DI+GVQTYVINSARV+FLNERPQP+S   KGV H+CEICGRSLLDPFRFCSL
Sbjct: 73  VAEIQKVLDITGVQTYVINSARVLFLNERPQPKSSTSKGVPHLCEICGRSLLDPFRFCSL 132

Query: 119 GCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPP 178
           GCKL  IK +G+A+F L  K+E   E +EG+ R++ S+++EELRE SQ D+Y  T   P 
Sbjct: 133 GCKLVRIKNNGDATFNLSTKDEEVGEMREGMGRRLPSKEEEELREGSQQDMYTSTLTPPH 192

Query: 179 SSARRRKGVPHRAPFGS 195
           S++RRRKG+PHRAPFGS
Sbjct: 193 SNSRRRKGIPHRAPFGS 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570794|ref|XP_003553569.1| PREDICTED: uncharacterized protein LOC100803083 [Glycine max]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 163/197 (82%), Gaps = 5/197 (2%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
           +L T FF VCR H +AARSECNM+CL CN +AFCFYC SS+HKDHQVIQIRRSSYHDVVR
Sbjct: 20  LLHTPFFNVCRIHAEAARSECNMFCLHCNGEAFCFYCSSSRHKDHQVIQIRRSSYHDVVR 79

Query: 61  VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
           V EIQ ++DISGVQTYVINSARV+FLN RPQP+SGKGVAHICEICGRSLLDPFRFCSLGC
Sbjct: 80  VSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGC 139

Query: 121 KLAGIKRDGNASFTLEIKNEAF-MERKEGISRQVSSRKQ-EELREDSQHDIYPPTTHKPP 178
           KL GI+++G+ASF L+ +NE   M+   G    VSSR+Q EELRE S  D+YP T     
Sbjct: 140 KLEGIRKNGDASFALDGRNEELTMDTSRG---SVSSRQQEEELREGSTQDMYPATPSPSA 196

Query: 179 SSARRRKGVPHRAPFGS 195
           S++RRRKG+PHRAPFGS
Sbjct: 197 SNSRRRKGIPHRAPFGS 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510907|ref|XP_003625742.1| hypothetical protein MTR_7g102790 [Medicago truncatula] gi|355500757|gb|AES81960.1| hypothetical protein MTR_7g102790 [Medicago truncatula]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/197 (74%), Positives = 164/197 (83%), Gaps = 7/197 (3%)

Query: 1   MLRTAFFTVCRTHGDAARSECNMYCLDCN--DQAFCFYCRSSKHKDHQVIQIRRSSYHDV 58
           +L+T FF +CR H DAAR+ECNMYCLDCN  D AFCFYCRSS+HKDHQVIQIRRSSYHDV
Sbjct: 13  LLKTPFFNICRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHQVIQIRRSSYHDV 72

Query: 59  VRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSL 118
           VRV EIQ ++DISGVQTYVINSARV+FLN RPQP+SGKGVAHICEICGRSLLD FRFCSL
Sbjct: 73  VRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDSFRFCSL 132

Query: 119 GCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPP 178
           GCKL  IK++G+ASF LE KNE      EG+S   SSR +EELRE S  D+YP T   PP
Sbjct: 133 GCKLERIKKNGDASFALEGKNEGLT--MEGVS---SSRSEEELREGSTQDMYPLTPPPPP 187

Query: 179 SSARRRKGVPHRAPFGS 195
            +ARRRKG+PHRAPFGS
Sbjct: 188 LNARRRKGIPHRAPFGS 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.974	0.892	0.536	2.7e-52
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.707	0.563	0.647	7.7e-52
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.707	0.560	0.635	2e-51
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.876	0.904	0.529	7.4e-50
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.953	0.819	0.525	3.7e-48
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.984	0.888	0.467	1.9e-42
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.964	0.831	0.456	5.2e-42
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.589	0.449	0.478	3.7e-29
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.702	0.559	0.428	1.2e-28
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.933	0.748	0.336	4.2e-24

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 104/194 (53%), Positives = 130/194 (67%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             +LR  FF  C+ H D+ +SECNMYCLDC +   C  C S  HKDH  IQIRRSSYHDV+R
Sbjct:    18 LLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSF-HKDHHAIQIRRSSYHDVIR 76

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
             V EIQ  +DI+GVQTYVINSA+VVFLNERPQPR GKGV + CE+C RSL+D FRFCSLGC
Sbjct:    77 VSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRFCSLGC 136

Query:   121 KLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSS 180
             K++GI +     +T  + +         I R    +K +++  +S     PP +      
Sbjct:   137 KISGISKKKRKEWTNNLSDSDDSYSSTSIGRL---KKNDDIMNNSFTPSTPPLSAVNRRI 193

Query:   181 ARRRKGVPHRAPFG 194
             A+RRKG+PHRAPFG
Sbjct:   194 AKRRKGIPHRAPFG 207

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 90/139 (64%), Positives = 111/139 (79%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             MLR  +F  C  H  + +SECNM+CLDC+ +AFC YC  + H++H+V+QIRRSSYH+VVR
Sbjct:    24 MLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLN-HRNHRVLQIRRSSYHNVVR 82

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
             V EIQ  +DIS VQTY+INSAR+VFLNERPQPR GKGV + CEIC RSLLD FRFCSLGC
Sbjct:    83 VNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRFCSLGC 142

Query:   121 KLAGIKRDGNASFTLEIKN 139
             KL G+KRD + +F+L  K+
Sbjct:   143 KLGGMKRDPSLTFSLRGKH 161

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 89/140 (63%), Positives = 110/140 (78%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             MLR ++F  C  H D+ ++ECN++CLDC   AFC YC   KHKDH+V+QIRRSSYH+VVR
Sbjct:    22 MLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLV-KHKDHRVVQIRRSSYHNVVR 80

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
             V EIQ  +DI+ VQTY+INSA++VFLNERPQPR GKGV + CEIC RSLLD FRFCSLGC
Sbjct:    81 VNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRFCSLGC 140

Query:   121 KLAGIKRDGNASFTLEIKNE 140
             KL G++R G+ S T  +K +
Sbjct:   141 KLGGMRR-GDLSLTFSLKGK 159

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 108/204 (52%), Positives = 140/204 (68%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             +LRT FF++C  H +  R+ECNM+CL C + AFCFYCRSS H DH V+QIRRSSYHDVVR
Sbjct:    10 LLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSSYHDVVR 69

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSG---------KGVAHICEICGRSLLD 111
             V EI+N +DI GVQTYVINSARV+FLNERPQP++          K +++ CE C R+LLD
Sbjct:    70 VSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETCCRTLLD 129

Query:   112 PFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYP 171
             PFRFCSLGCK+ G++           KN+   E +E        R ++E ++++    +P
Sbjct:   130 PFRFCSLGCKVEGMR-----------KNK---EEEE-------ERLRKERQQETHKGTHP 168

Query:   172 PTTHKPPSSARRRKGVPHRAPFGS 195
             PT H   S++RRRKG+PHRAPF S
Sbjct:   169 PT-HT--SNSRRRKGIPHRAPFAS 189

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 103/196 (52%), Positives = 128/196 (65%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             +L+  FF  C+ HGD+ +SECNMYCLDC +   C  C +  HKDH+ IQIRRSSYHDV+R
Sbjct:    40 LLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAH-HKDHRTIQIRRSSYHDVIR 98

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP-FRFCSLG 119
             V EIQ  +DI G+QTYVINSA+VVFLNERPQPR GKGV + C++C RSL+D  FRFCSLG
Sbjct:    99 VNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSLVDDSFRFCSLG 158

Query:   120 CKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPP-TTHKPP 178
             CK+AG  R     F    +N   ME ++  S     +    L+  S     PP TT    
Sbjct:   159 CKIAGTSR----GFEKGREN-LLMETEDSSSSIAIGKNITNLQSFSPST--PPLTTSSNC 211

Query:   179 SSARRRKGVPHRAPFG 194
                +RRKG+PHR+P G
Sbjct:   212 RIVKRRKGIPHRSPMG 227

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 95/203 (46%), Positives = 128/203 (63%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             MLR  +F  C  H  +++SECN++CLDC+  AFC  C +  H+ H+VIQIRRSSYH+VVR
Sbjct:    15 MLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAH-HRTHRVIQIRRSSYHNVVR 73

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
             V EIQ  +DIS +QTYVINSA++ FLN RPQ R+GK +   C+IC R+LLD F FCSL C
Sbjct:    74 VSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDSFLFCSLAC 133

Query:   121 KLAGIKRDGNASFTLEIKNEAFMERK---EGI-SRQVS--SRKQEELREDSQHDIYPPT- 173
             KL G+K   + + TL    ++    K    GI SR +   S   ++ R ++   + P T 
Sbjct:   134 KLEGVKNGEDPNLTLFHSGKSDDSSKIINTGICSRLIDGISIAVDDQRSETAGVLSPETP 193

Query:   174 ---THKPPSSARRRKGVPHRAPF 193
                +H+      RRKG+P RAPF
Sbjct:   194 SIESHRNYPMKSRRKGIPQRAPF 216

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 90/197 (45%), Positives = 120/197 (60%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             +L   FF  C+ HG   R+EC MYCLDC + +FC  C S +H++H+ IQIR SSYH+V +
Sbjct:    34 LLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLS-EHENHRTIQIRISSYHNVTK 92

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP-FRFCSLG 119
             V EIQ  +DIS +QTYVINS++V+FLNERPQ + GKG  + C +C R L +  FRFCS+G
Sbjct:    93 VDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFRFCSIG 152

Query:   120 CKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQ-EELREDSQHDIYPPTTHKPP 178
             CK+AG     +  F   +K+          S  V +     E    +   + PPT   PP
Sbjct:   153 CKVAGT----SGVFQKRVKHTTNDSDNSNNSSGVENNSSGAENGNSNLQSLSPPTPQFPP 208

Query:   179 SSARRR--KGVPHRAPF 193
              S R+R  KG+PHRAPF
Sbjct:   209 RSLRKRLRKGIPHRAPF 225

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 56/117 (47%), Positives = 78/117 (66%)

Query:     6 FFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQ 65
             FF  C  H  A ++E N+ CLDC   + C +C  S H+ H+++Q+RR  YHDVVR+ ++Q
Sbjct:    17 FFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPS-HRFHRLLQVRRYVYHDVVRLEDLQ 74

Query:    66 NIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKL 122
              ++D S VQ Y INSA+VVF+ +RPQ R  KG  + C  C RSL +P+  CSLGCK+
Sbjct:    75 KLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIHCSLGCKV 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 60/140 (42%), Positives = 83/140 (59%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             +L+  FF  C  H D  ++E N+ C+DC     C +C SS H  H+++QIRR  Y DV+R
Sbjct:    13 LLKDKFFNACLDHEDDKKNEKNILCIDCC-LTICPHCLSS-HTSHRLLQIRRYVYRDVLR 70

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
             V +   +MD S +Q Y  NS++VVF+NERPQ R  +G  +IC  C RSL  P+ FC L C
Sbjct:    71 VEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQSPYLFCCLSC 130

Query:   121 KLAG-IKRDGNASFTLEIKN 139
             K++  I R    S  L + N
Sbjct:   131 KISDVIMRQRGLSGFLRVCN 150

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 65/193 (33%), Positives = 106/193 (54%)

Query:     1 MLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVR 60
             ++   FF+ C  H    +SE N++CL C   + C +C  S H+ H ++Q+RR  YHDVVR
Sbjct:    25 LMAETFFSSCGIHETRRKSEKNVFCLLCC-LSVCPHCLPS-HRSHPLLQVRRYVYHDVVR 82

Query:    61 VGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGC 120
             + +++ ++D S VQ Y IN A+V+FLN+R Q R+ K  +++C  C R L +PF FCSL C
Sbjct:    83 LSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRA-KVSSNVCFTCDRILQEPFHFCSLSC 141

Query:   121 KLAGIKRDGN--ASFTLEIKNEAF-ME--RKEGISR--QVSSRKQ-EELREDSQHDIYPP 172
             K+  +   G+  +S    I    F  E  R +G  +  ++S+ +  E++   S       
Sbjct:   142 KVDYLSYQGDDLSSILYRIDESDFTFEGLRMDGHDQLGEISTMEDGEDILVISDESEQGN 201

Query:   173 TTHKPPSSARRRK 185
              +HK      ++K
Sbjct:   202 NSHKKEKKKSKKK 214

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280263 hypothetical protein (202 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	4e-42
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	0.002

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  136 bits (343), Expect = 4e-42
 Identities = 58/72 (80%), Positives = 64/72 (88%)

Query: 51  RRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLL 110
           RRSSYHDVVRV +IQ ++DISGVQTYVINSA+VVFLNERPQ R GKG  +ICE C RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 111 DPFRFCSLGCKL 122
           DPFRFCSLGCK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 8  TVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 50
            C +HGD        +C +C     C  C  ++H+ H V+ +
Sbjct: 4  PKCDSHGDE---PAEFFCEEC-GALLCRTCDEAEHRGHTVVLL 42

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	97.01
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.91
PRK01343	57	zinc-binding protein; Provisional	96.83
PRK00418	62	DNA gyrase inhibitor; Reviewed	96.68
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	96.52
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	96.11
smart00336	42	BBOX B-Box-type zinc finger.	95.39
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	90.2
PF10013	42	DUF2256: Uncharacterized protein conserved in bact	83.49

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=1.2e-41  Score=248.66  Aligned_cols=72  Identities=69%  Similarity=1.204  Sum_probs=71.1

Q ss_pred             EeecccceeeechhhhhhcccceeEEEECCceEEEecCCCCCCCCCCCCccccccccccCCCCeeeccccee
Q 029339           51 RRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKL  122 (195)
Q Consensus        51 RRssYhdVVrv~diqkllDiS~IQtYvINsakVVFLn~RPq~~~~~~~~~~C~~C~R~L~d~~rFCSl~CKv  122 (195)
                      |||||||||||+|||||||||+||||+||++||||||+|||+++++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999996

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=97.01  E-value=0.0001  Score=52.18  Aligned_cols=41  Identities=37%  Similarity=0.727  Sum_probs=26.0

Q ss_pred             CccccccccccCC----CCe-eecccceecccccCCCcccccccch
Q 029339           99 AHICEICGRSLLD----PFR-FCSLGCKLAGIKRDGNASFTLEIKN  139 (195)
Q Consensus        99 ~~~C~~C~R~L~d----~~r-FCSl~CKv~~~~~~~~~~~~l~~~~  139 (195)
                      +..|.+|++...-    +|+ |||-+||+.++.++.+-.+.|....
T Consensus         2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~   47 (57)
T PF03884_consen    2 TVKCPICGKPVEWSPENPFRPFCSERCKLIDLGRWANEEYRIPGEP   47 (57)
T ss_dssp             EEE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-SSSSS----SSS
T ss_pred             cccCCCCCCeecccCCCCcCCcccHhhcccCHHHHhcCCcccCCCC
Confidence            4579999998865    677 9999999999999998888887655

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.91  E-value=0.0002  Score=45.81  Aligned_cols=38  Identities=34%  Similarity=0.884  Sum_probs=30.0

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   50 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   50 (195)
                      .|..|.+   .+.++||.+|.. .+|..|....|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            5888875   338899999985 9999996666999988754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>PRK01343 zinc-binding protein; Provisional

Probab=96.83  E-value=0.00035  Score=49.59  Aligned_cols=40  Identities=23%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CccccccccccCCCCe-eecccceecccccCCCcccccccc
Q 029339           99 AHICEICGRSLLDPFR-FCSLGCKLAGIKRDGNASFTLEIK  138 (195)
Q Consensus        99 ~~~C~~C~R~L~d~~r-FCSl~CKv~~~~~~~~~~~~l~~~  138 (195)
                      ...|.+|++....+|+ |||-+|+..++.+|.+-.+.|...
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~   49 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGSYVIPGA   49 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCCcccCCC
Confidence            5689999999877765 999999999999998888877653

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=96.68  E-value=0.00058  Score=49.17  Aligned_cols=40  Identities=28%  Similarity=0.621  Sum_probs=33.8

Q ss_pred             CccccccccccC----CCCe-eecccceecccccCCCcccccccc
Q 029339           99 AHICEICGRSLL----DPFR-FCSLGCKLAGIKRDGNASFTLEIK  138 (195)
Q Consensus        99 ~~~C~~C~R~L~----d~~r-FCSl~CKv~~~~~~~~~~~~l~~~  138 (195)
                      ...|.+|++...    .+|| |||-+||+.+++++.+-.+.|...
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~   50 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSS   50 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhhHHHHHcCCcccCCC
Confidence            568999999874    3686 999999999999998888888654

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.00083  Score=48.82  Aligned_cols=38  Identities=32%  Similarity=0.756  Sum_probs=32.9

Q ss_pred             CccccccccccCC----CCe-eecccceecccccCCCcccccc
Q 029339           99 AHICEICGRSLLD----PFR-FCSLGCKLAGIKRDGNASFTLE  136 (195)
Q Consensus        99 ~~~C~~C~R~L~d----~~r-FCSl~CKv~~~~~~~~~~~~l~  136 (195)
                      +..|.+|++...-    +|| |||-+||+.+++++.+-.+.+.
T Consensus         7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDLg~Wa~eey~Ip   49 (65)
T COG3024           7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLIDLGEWAAEEYAIP   49 (65)
T ss_pred             cccCCCCCCcccccccCCcCcchhHhhhhcchhhhhccCcccC
Confidence            5679999998854    677 9999999999999988777777

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=96.11  E-value=0.0035  Score=38.76  Aligned_cols=37  Identities=24%  Similarity=0.671  Sum_probs=28.6

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQ   49 (195)
                      .|+.|..   +.-.+||.+|.. .+|..|....|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            4777753   245799999985 899999666699997764

>smart00336 BBOX B-Box-type zinc finger

Probab=95.39  E-value=0.012  Score=36.78  Aligned_cols=36  Identities=31%  Similarity=0.937  Sum_probs=28.1

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCcee
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI   48 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~Hrvl   48 (195)
                      .|+.|..   ..-.+||.+|.. .+|..|....|++|.++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            4777764   335799999985 89999965679999775

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=90.20  E-value=0.066  Score=35.94  Aligned_cols=29  Identities=24%  Similarity=0.665  Sum_probs=24.3

Q ss_pred             Ccccccccccc---CCCCeeecccceeccccc
Q 029339           99 AHICEICGRSL---LDPFRFCSLGCKLAGIKR  127 (195)
Q Consensus        99 ~~~C~~C~R~L---~d~~rFCSl~CKv~~~~~  127 (195)
                      .+.|.+|+|-+   .+...|||..|++.+...
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            46899999999   667889999999877644

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.49  E-value=0.38  Score=32.43  Aligned_cols=23  Identities=39%  Similarity=1.139  Sum_probs=19.9

Q ss_pred             CccccccccccC---------CCCeeecccce
Q 029339           99 AHICEICGRSLL---------DPFRFCSLGCK  121 (195)
Q Consensus        99 ~~~C~~C~R~L~---------d~~rFCSl~CK  121 (195)
                      ...|.+|+|...         |...|||-+|.
T Consensus         8 ~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR   39 (42)
T PF10013_consen    8 SKICPVCGRPFTWRKKWARCWDEVKYCSDRCR   39 (42)
T ss_pred             CCcCcccCCcchHHHHHHHhchhhccHHHHhc
Confidence            569999999984         56899999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
1lv3_A	68	Hypothetical protein YACG; zinc finger, rubredoxin	96.1
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	95.82
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	95.8
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.57
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.49
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	95.24
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	94.16
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	94.13
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	93.48
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.09
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	91.93
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	88.74
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	85.09

>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9

Probab=96.10  E-value=0.00075  Score=48.36  Aligned_cols=42  Identities=24%  Similarity=0.620  Sum_probs=34.4

Q ss_pred             CCccccccccccC----CCC-eeecccceecccccCCCcccccccch
Q 029339           98 VAHICEICGRSLL----DPF-RFCSLGCKLAGIKRDGNASFTLEIKN  139 (195)
Q Consensus        98 ~~~~C~~C~R~L~----d~~-rFCSl~CKv~~~~~~~~~~~~l~~~~  139 (195)
                      ....|.+|++...    .+| .|||-+||..++.++.+-.+.|....
T Consensus         8 ~~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~Wa~e~y~Ip~~~   54 (68)
T 1lv3_A            8 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSG   54 (68)
T ss_dssp             CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSS
T ss_pred             CcCcCCCCCCcccccccCCCCcccCHHHHhhhHHHHhcCCccccCCC
Confidence            3568999999985    355 59999999999999998888886543

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=95.82  E-value=0.0056  Score=37.97  Aligned_cols=36  Identities=31%  Similarity=0.742  Sum_probs=28.8

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   49 (195)
                      .|+.|..    .-.+||.+|.. .+|..|.. ..|++|+++-
T Consensus         5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence            5888852    47799999985 89999965 6899998763

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=95.80  E-value=0.0019  Score=41.63  Aligned_cols=38  Identities=29%  Similarity=0.668  Sum_probs=30.1

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   50 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   50 (195)
                      .|+.|.+   ..-++||.+|.. .+|..|....|++|+++-|
T Consensus         8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence            5888854   247799999985 8999997678999987643

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.57  E-value=0.0036  Score=41.93  Aligned_cols=38  Identities=34%  Similarity=0.832  Sum_probs=29.5

Q ss_pred             ccccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339            8 TVCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   49 (195)
Q Consensus         8 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   49 (195)
                      ..|+.|.+   ..-++||.+|.. .+|..|.. ..|++|+++-
T Consensus         9 ~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   47 (64)
T 2d8u_A            9 PMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAP   47 (64)
T ss_dssp             CCCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEEC
T ss_pred             CcCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeC
Confidence            35888854   247799999985 89999953 5899997664

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.49  E-value=0.0036  Score=40.10  Aligned_cols=40  Identities=33%  Similarity=0.798  Sum_probs=30.9

Q ss_pred             cccccccCCCCCCCCceecccCCCCcCCcccC-CCCCCCCceeEE
Q 029339            7 FTVCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQI   50 (195)
Q Consensus         7 F~~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI   50 (195)
                      ...|+.|.+   .+-++||.+|.. .+|..|. ...|++|+++.|
T Consensus         6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence            356888873   236799999984 8999994 468999988754

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=95.24  E-value=0.0066  Score=39.54  Aligned_cols=37  Identities=24%  Similarity=0.781  Sum_probs=29.8

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI   50 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   50 (195)
                      .|+.|.    ....+||.+|.. .+|..|.. ..|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            588885    247799999985 89999964 78999987754

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.16  E-value=0.017  Score=38.77  Aligned_cols=37  Identities=22%  Similarity=0.760  Sum_probs=30.1

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI   50 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   50 (195)
                      .|+.|..    ...+||.+|.. .+|..|.. ..|++|+++-|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            5888863    47799999985 89999954 78999988765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.13  E-value=0.011  Score=40.67  Aligned_cols=37  Identities=24%  Similarity=0.784  Sum_probs=29.6

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   50 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   50 (195)
                      .|+.|.    ..-++||.+|.. .+|..|....|++|+++-|
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence            688884    247799999985 8999996688999977643

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=93.48  E-value=0.014  Score=40.95  Aligned_cols=39  Identities=33%  Similarity=0.853  Sum_probs=30.4

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeEEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQIR   51 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQIR   51 (195)
                      .|+.|..   ..-++||.+|.. .+|..|.. ..|++|+++-|-
T Consensus        20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l~   59 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN   59 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCHH
Confidence            5888853   137799999985 89999965 789999877553

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.09  E-value=0.027  Score=40.40  Aligned_cols=37  Identities=38%  Similarity=0.899  Sum_probs=29.1

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   49 (195)
                      .|+.|.+   ...++||.+|.. .+|..|.. ..|++|+++-
T Consensus        61 ~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           61 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCC
T ss_pred             cCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeec
Confidence            5888854   237799999985 89999964 7899998764

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.93  E-value=0.011  Score=39.63  Aligned_cols=36  Identities=31%  Similarity=0.789  Sum_probs=28.4

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   49 (195)
                      .|..|.    ....+||.+|.. .+|..|.. ..|++|+++.
T Consensus        20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            488884    247799999984 89999954 6899998764

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=88.74  E-value=0.1  Score=34.25  Aligned_cols=25  Identities=36%  Similarity=0.935  Sum_probs=18.4

Q ss_pred             CCCcccccccc-ccCCC-----Ceeecccce
Q 029339           97 GVAHICEICGR-SLLDP-----FRFCSLGCK  121 (195)
Q Consensus        97 ~~~~~C~~C~R-~L~d~-----~rFCSl~CK  121 (195)
                      +....||.|++ .....     -||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            34568999998 44444     479999994

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=85.09  E-value=0.56  Score=32.93  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=24.1

Q ss_pred             CCCCCCCCccccccccccCC----------CCeeecccce
Q 029339           92 PRSGKGVAHICEICGRSLLD----------PFRFCSLGCK  121 (195)
Q Consensus        92 ~~~~~~~~~~C~~C~R~L~d----------~~rFCSl~CK  121 (195)
                      .++.+.....|+.|.+.|+.          +-.|||..|-
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL   52 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL   52 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence            45667788999999999973          3459999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	96.77
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.61
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.6
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	96.44
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.52

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00013  Score=50.06  Aligned_cols=42  Identities=26%  Similarity=0.665  Sum_probs=34.8

Q ss_pred             CCccccccccccC----CCCe-eecccceecccccCCCcccccccch
Q 029339           98 VAHICEICGRSLL----DPFR-FCSLGCKLAGIKRDGNASFTLEIKN  139 (195)
Q Consensus        98 ~~~~C~~C~R~L~----d~~r-FCSl~CKv~~~~~~~~~~~~l~~~~  139 (195)
                      .+..|.+|++...    .+|+ |||-+||+.+++++.+-.+.|....
T Consensus         5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~~   51 (65)
T d1lv3a_           5 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSG   51 (65)
T ss_dssp             CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSS
T ss_pred             ceeeCCCCCCccccCCCCCcCCchhHhhhhccHHHHhcCCcccCCCC
Confidence            4568999999763    3577 9999999999999999888886543

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00033  Score=44.93  Aligned_cols=37  Identities=35%  Similarity=0.837  Sum_probs=28.9

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccC-CCCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQ   49 (195)
                      .|+.|.+   ..-++||.+|.. ++|..|. ...|++|.+.-
T Consensus         3 ~C~~H~~---e~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~   40 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAP   40 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEEC
T ss_pred             CCcccCc---CcceEEcCCCCc-eECccccCcCCcCcCcCcC
Confidence            5888864   236799999985 9999994 46899997654

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.60  E-value=0.00079  Score=41.28  Aligned_cols=35  Identities=31%  Similarity=0.765  Sum_probs=28.6

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCC-CCCCCCcee
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVI   48 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~Hrvl   48 (195)
                      .|+.|..    .-++||.+|.. .+|..|.. ..|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5888853    47799999985 89999954 479999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00029  Score=46.38  Aligned_cols=37  Identities=24%  Similarity=0.788  Sum_probs=30.5

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccCCCCCCCCceeEE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   50 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   50 (195)
                      .|+.|..    .-.+||.+|.. .+|..|....|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            6999942    57799999985 8999997778999987754

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.00027  Score=44.83  Aligned_cols=37  Identities=38%  Similarity=0.909  Sum_probs=28.9

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccC-CCCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQ   49 (195)
                      .|+.|.+   .+-++||.+|.. ++|..|. ...|++|.+.-
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCCC
T ss_pred             cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEee
Confidence            4888865   236899999985 9999994 45799997653

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.00062  Score=45.54  Aligned_cols=38  Identities=37%  Similarity=0.905  Sum_probs=30.1

Q ss_pred             cccccCCCCCCC-CceecccCCCCcCCcccC-CCCCCCCceeEEE
Q 029339            9 VCRTHGDAARSE-CNMYCLDCNDQAFCFYCR-SSKHKDHQVIQIR   51 (195)
Q Consensus         9 ~C~~H~~~~knE-~N~FCldC~~~~~C~~C~-~~~H~~HrvlQIR   51 (195)
                      .|+.|.+    | -++||.+|.. .+|..|. ...|++|.+.-|.
T Consensus        13 ~C~~H~~----e~l~~fC~~C~~-~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHEN----EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSS----SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCC----ccceeEcCCCCc-eeccccccCCCCCCCcCcCHH
Confidence            4888864    4 6899999984 8999995 3579999877554

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0024  Score=39.13  Aligned_cols=36  Identities=28%  Similarity=0.837  Sum_probs=29.0

Q ss_pred             cccccCCCCCCCCceecccCCCCcCCcccC-CCCCCCCceeE
Q 029339            9 VCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQ   49 (195)
Q Consensus         9 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQ   49 (195)
                      .|+.|..    ..++||.+|.. .+|..|. ...|++|+++=
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~p   39 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVVP   39 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEec
Confidence            5888853    57899999985 8999995 35899998863