Citrus Sinensis ID: 029348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG
Secondary Structure (PSIPRED)
ccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEccHHHHHHHHHcc
Coil and Loop (DISEMBL)
migvgkikqysnvldkplskgkqeVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHrdkgnrreTRLLGILSFVHSTVWKVLFGKVADslekgtehedeYMISEKELLVNRFisipkdmgtfncgAFVAGIVRGvldsagfpavvtahfvpvegqqrprtTILIKFAEEVLRREARLG
Flexible Loop (DISEMBL)
migvgkikqysnvldkplskGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLchrdkgnrreTRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAhfvpvegqqrprttiLIKFAEEVLRREARLG
Low Complexity Region (SEG)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG
Disordered region (IsUnstruct)
************************VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV********
Disordered Region (DISOPRED)
*****************************FAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARL*
Disordered Region (DISEMBL)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG
Disordered Region (DISPRO)
****************PLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q54YG5	186	Trafficking protein parti	yes	no	0.927	0.967	0.611	2e-63
Q9P7N9	209	Transport protein particl	yes	no	0.876	0.813	0.532	1e-47
Q8IUR0	188	Trafficking protein parti	yes	no	0.891	0.920	0.505	1e-43
Q2NL13	188	Trafficking protein parti	yes	no	0.891	0.920	0.505	2e-43
Q5F359	188	Trafficking protein parti	yes	no	0.907	0.936	0.480	3e-43
Q9CQA1	188	Trafficking protein parti	yes	no	0.891	0.920	0.505	4e-43
P15847	184	Trafficking protein parti	yes	no	0.896	0.945	0.446	1e-33
Q7KQM2	184	Trafficking protein parti	yes	no	0.896	0.945	0.446	1e-33
Q03337	283	Trafficking protein parti	yes	no	0.592	0.406	0.429	7e-19
Q8SU25	155	Putative trafficking prot	yes	no	0.706	0.883	0.289	5e-09

>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 146/180 (81%)

Query: 12  NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
           N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC
Sbjct: 7   NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query: 72  HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
            R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+
Sbjct: 67  VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query: 132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREA 191
           PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  EV+ R A
Sbjct: 127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVIERNA 186

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRL 83
           +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+  R++  +RETR+
Sbjct: 40  DVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRI 99

Query: 84  LGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAF 143
           LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS+PK+M   NC A+
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 144 VAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG 194
           +AGI+ G LDSA FP   +AH VP+  Q   RT ILIK    V+ RE  LG
Sbjct: 160 LAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVILIKLDPSVIAREEVLG 209

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 122/180 (67%), Gaps = 7/180 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+ R+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVIARD 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 7/180 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+ R+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVIARD 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 7/183 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L
Sbjct: 10  SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS
Sbjct: 70  VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           +P++  T NC AF AG+V  VL ++GFPA VTAH+          TT++IKF E V+ R+
Sbjct: 130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHW-------HKGTTLMIKFEEGVIARD 182

Query: 191 ARL 193
             L
Sbjct: 183 KSL 185

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Gallus gallus (taxid: 9031)

>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 7/180 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+ R+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVIARD 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 3/177 (1%)

Query: 14  LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
           ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L ++
Sbjct: 8   IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67

Query: 74  DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
           +K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PK
Sbjct: 68  NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125

Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           D G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV+ RE
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVVERE 181

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (taxid: 5833)

>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 3/177 (1%)

Query: 14  LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
           ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L ++
Sbjct: 8   IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67

Query: 74  DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
           +K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PK
Sbjct: 68  NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125

Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           D G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV+ RE
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVVERE 181

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)

Query: 75  KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
           K  RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +F  IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225

Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREA-RL 193
               +C  FV GI++G L +AGFP  VTAH +P +G    RT  LI+F  +VL RE  R 
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQFDRQVLDREGLRF 282

Query: 194 G 194
           G
Sbjct: 283 G 283

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 15/152 (9%)

Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K+EV +S  ++L   +++Y   Q  +I   E  L+  GY VG ++LEL C+ +    RE 
Sbjct: 2   KREVPVSTMSYLVCGMIEYLMEQRSDI---EADLKSIGYEVGIKLLEL-CNFE----REV 53

Query: 82  RLLGILSFVHSTVWKVLFGKVADS---LEKGTEHEDEYMISEKELLVNRFISIPKDMGTF 138
           R   I + ++   + +L   V+DS   +EK  + +  Y++++ + L +RFIS+P +    
Sbjct: 54  R---ISTLLYRATFDLL-SLVSDSDRRVEKARDVDRTYLLTDSDGLFSRFISVPDEWNGL 109

Query: 139 NCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEG 170
           +  + V G+++  L ++G+ + VTA   P E 
Sbjct: 110 SADSIVCGMIQAALMASGYDSEVTAFPEPSEN 141

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224088250	194	predicted protein [Populus trichocarpa]	1.0	1.0	0.989	1e-107
225445877	194	PREDICTED: trafficking protein particle	1.0	1.0	0.989	1e-107
255565009	194	Transport protein particle subunit trs31	1.0	1.0	0.984	1e-107
388508112	194	unknown [Lotus japonicus]	1.0	1.0	0.969	1e-106
224143977	194	predicted protein [Populus trichocarpa]	1.0	1.0	0.974	1e-105
388496864	194	unknown [Lotus japonicus]	1.0	1.0	0.958	1e-105
351722761	194	uncharacterized protein LOC100500147 [Gl	1.0	1.0	0.963	1e-105
449445664	194	PREDICTED: trafficking protein particle	1.0	1.0	0.963	1e-105
351721839	194	uncharacterized protein LOC100527008 [Gl	1.0	1.0	0.963	1e-105
297796721	195	transport protein particle component Bet	0.994	0.989	0.953	1e-104

>gi|224088250|ref|XP_002308390.1| predicted protein [Populus trichocarpa] gi|118483059|gb|ABK93439.1| unknown [Populus trichocarpa] gi|222854366|gb|EEE91913.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/194 (98%), Positives = 194/194 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVL+KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLEKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVLRREARLG
Sbjct: 181 KFAEEVLRREARLG 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445877|ref|XP_002279200.1| PREDICTED: trafficking protein particle complex subunit 5 [Vitis vinifera] gi|297743638|emb|CBI36521.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/194 (98%), Positives = 193/194 (99%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQ QVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQAQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVLRREARLG
Sbjct: 181 KFAEEVLRREARLG 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565009|ref|XP_002523497.1| Transport protein particle subunit trs31, putative [Ricinus communis] gi|223537204|gb|EEF38836.1| Transport protein particle subunit trs31, putative [Ricinus communis]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/194 (98%), Positives = 194/194 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVH+TVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHTTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVLRREARLG
Sbjct: 181 KFAEEVLRREARLG 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508112|gb|AFK42122.1| unknown [Lotus japonicus]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/194 (96%), Positives = 193/194 (99%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSNVLDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVLRREARLG
Sbjct: 181 KFAEEVLRREARLG 194

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143977|ref|XP_002325144.1| predicted protein [Populus trichocarpa] gi|118489123|gb|ABK96368.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866578|gb|EEF03709.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/194 (97%), Positives = 190/194 (97%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVS SAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSSSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQ RPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQHRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KF EEVLRREARLG
Sbjct: 181 KFGEEVLRREARLG 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496864|gb|AFK36498.1| unknown [Lotus japonicus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/194 (95%), Positives = 192/194 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSN+LDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNILDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPR TILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVLRREARLG
Sbjct: 181 KFAEEVLRREARLG 194

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722761|ref|NP_001237511.1| uncharacterized protein LOC100500147 [Glycine max] gi|255629460|gb|ACU15076.1| unknown [Glycine max]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/194 (96%), Positives = 191/194 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPL++GKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLTRGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLL ILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLNILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVLRREARLG
Sbjct: 181 KFAEEVLRREARLG 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445664|ref|XP_004140592.1| PREDICTED: trafficking protein particle complex subunit 5-like [Cucumis sativus] gi|449521790|ref|XP_004167912.1| PREDICTED: trafficking protein particle complex subunit 5-like [Cucumis sativus]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/194 (96%), Positives = 191/194 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVL+KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLEKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLEL CHR+KGNRRETRLLGILSFVHST+WKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELFCHREKGNRRETRLLGILSFVHSTIWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMG FNCGAFVAGIVRGVLD+AGFPAVVTAHFVPVEGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPVEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVL REARLG
Sbjct: 181 KFAEEVLAREARLG 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721839|ref|NP_001237223.1| uncharacterized protein LOC100527008 [Glycine max] gi|255631356|gb|ACU16045.1| unknown [Glycine max]

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/194 (96%), Positives = 191/194 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLC RDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCRRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVL+REARLG
Sbjct: 181 KFAEEVLQREARLG 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796721|ref|XP_002866245.1| transport protein particle component Bet3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312080|gb|EFH42504.1| transport protein particle component Bet3 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/193 (95%), Positives = 193/193 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARL 193
           KFAEEVL+REARL
Sbjct: 181 KFAEEVLKREARL 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2147770	195	AT5G58030 "AT5G58030" [Arabido	0.994	0.989	0.948	1.8e-94
DICTYBASE|DDB_G0278643	186	trappc5 "trafficking protein p	0.927	0.967	0.611	3.6e-57
POMBASE|SPBC1718.05	209	trs31 "TRAPP complex subunit T	0.938	0.870	0.510	1.3e-43
UNIPROTKB|Q5F359	188	TRAPPC5 "Trafficking protein p	0.907	0.936	0.486	2.6e-40
UNIPROTKB|F1MSD6	188	TRAPPC5 "Trafficking protein p	0.907	0.936	0.508	3.3e-40
UNIPROTKB|Q8IUR0	188	TRAPPC5 "Trafficking protein p	0.907	0.936	0.508	3.3e-40
UNIPROTKB|F1SCJ1	188	TRAPPC5 "Uncharacterized prote	0.907	0.936	0.508	3.3e-40
UNIPROTKB|Q2NL13	188	TRAPPC5 "Trafficking protein p	0.907	0.936	0.508	4.2e-40
ZFIN|ZDB-GENE-040718-185	188	trappc5 "trafficking protein p	0.907	0.936	0.480	4.2e-40
UNIPROTKB|E2RBU4	188	TRAPPC5 "Uncharacterized prote	0.907	0.936	0.508	6.8e-40

TAIR|locus:2147770 AT5G58030 "AT5G58030" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 183/193 (94%), Positives = 193/193 (100%)

Query:     1 MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
             MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct:     1 MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query:    61 AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
             AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct:    61 AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query:   121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
             KELLVNRFISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct:   121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query:   181 KFAEEVLRREARL 193
             KFA+EVL+REARL
Sbjct:   181 KFADEVLKREARL 193

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0278643 trappc5 "trafficking protein particle complex subunit 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 110/180 (61%), Positives = 146/180 (81%)

Query:    12 NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
             N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC
Sbjct:     7 NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query:    72 HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
              R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+
Sbjct:    67 VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query:   132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREA 191
             PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  EV+ R A
Sbjct:   127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVIERNA 186

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC1718.05 trs31 "TRAPP complex subunit Trs31 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 94/184 (51%), Positives = 129/184 (70%)

Query:    12 NVLDKPLSKGKQ-EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             +V ++ L+K +  +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+
Sbjct:    27 SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELV 86

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R++  +RETR+LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS
Sbjct:    87 VWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFIS 146

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+M   NC A++AGI+ G LDSA FP   +AH VP+  Q   RT ILIK    V+ RE
Sbjct:   147 VPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPLS-QYPYRTVILIKLDPSVIARE 205

Query:   191 ARLG 194
               LG
Sbjct:   206 EVLG 209

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0032313 "regulation of Rab GTPase activity" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

UNIPROTKB|Q5F359 TRAPPC5 "Trafficking protein particle complex subunit 5" [Gallus gallus (taxid:9031)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 89/183 (48%), Positives = 125/183 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L
Sbjct:    10 SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS
Sbjct:    70 VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +P++  T NC AF AG+V  VL ++GFPA VTAH+   +G     TT++IKF E V+ R+
Sbjct:   130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWH--KG-----TTLMIKFEEGVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 KSL 185

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1MSD6 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 93/183 (50%), Positives = 125/183 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+ R+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 RAL 185

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q8IUR0 TRAPPC5 "Trafficking protein particle complex subunit 5" [Homo sapiens (taxid:9606)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 93/183 (50%), Positives = 125/183 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+ R+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 RAL 185

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SCJ1 TRAPPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 93/183 (50%), Positives = 125/183 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+ R+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 RAL 185

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q2NL13 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 93/183 (50%), Positives = 124/183 (67%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+ R+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 RAL 185

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

ZFIN|ZDB-GENE-040718-185 trappc5 "trafficking protein particle complex 5" [Danio rerio (taxid:7955)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 88/183 (48%), Positives = 124/183 (67%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L
Sbjct:    10 SAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS
Sbjct:    70 VMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+  T NC AF  GIV  +L  +GFPA VT H+   +G     TT++IKF E V+ R+
Sbjct:   130 VPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH--KG-----TTLMIKFDESVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 KAL 185

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RBU4 TRAPPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 93/183 (50%), Positives = 124/183 (67%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINAYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+ R+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVIARD 182

Query:   191 ARL 193
               L
Sbjct:   183 RAL 185

GO:0030008 "TRAPP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54YG5	TPPC5_DICDI	No assigned EC number	0.6111	0.9278	0.9677	yes	no
Q2NL13	TPPC5_BOVIN	No assigned EC number	0.5055	0.8917	0.9202	yes	no
Q8IUR0	TPPC5_HUMAN	No assigned EC number	0.5055	0.8917	0.9202	yes	no
Q7KQM2	TPPC5_PLAF7	No assigned EC number	0.4463	0.8969	0.9456	yes	no
Q9CQA1	TPPC5_MOUSE	No assigned EC number	0.5055	0.8917	0.9202	yes	no
Q9P7N9	TRS31_SCHPO	No assigned EC number	0.5321	0.8762	0.8133	yes	no
Q5F359	TPPC5_CHICK	No assigned EC number	0.4808	0.9072	0.9361	yes	no
P15847	TPPC5_PLAFA	No assigned EC number	0.4463	0.8969	0.9456	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VI0519	SubName- Full=Putative uncharacterized protein; (194 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_XIII0363	SubName- Full=Putative uncharacterized protein; (186 aa)				•	•		•		0.649
	estExt_Genewise1_v1.C_2080046	hypothetical protein (136 aa)					•		•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
PTZ00391	168	PTZ00391, PTZ00391, transport protein particle com	3e-73
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	2e-60
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	4e-52

>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional

 Score =  218 bits (556), Expect = 3e-73
 Identities = 88/170 (51%), Positives = 116/170 (68%), Gaps = 2/170 (1%)

Query: 25  VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLL 84
           VSLS+FAFLFSE+VQY  ++      LE +L + G  VG ++ ELL +R+K  +RET++L
Sbjct: 1   VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60

Query: 85  GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFV 144
            IL+F+   VWK LFG  +D L K  + +DEYMI++K LL+N+FIS+PKD+G  NC AF 
Sbjct: 61  SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119

Query: 145 AGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG 194
           AGIV G+L SA FPA VTAH V     +   TTILIKF  EV+ RE  + 
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTP-KNFSTTILIKFYPEVIEREKSIQ 168

Length = 168

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score =  186 bits (474), Expect = 2e-60
 Identities = 76/184 (41%), Positives = 108/184 (58%), Gaps = 1/184 (0%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
            +V ++ L   K+EV LS  AFLF E+++Y   Q   I + E +L+  GY VG ++LEL 
Sbjct: 26  KSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELC 85

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R +  +RE R+L IL  +H  +W  LFG   D LEK  E + EYMI + + L++RFIS
Sbjct: 86  NFRRRNPKREVRILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFIS 145

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           +P +    +C + V GI++G L +AGFP  VTAH  P E     RT  LI+  + V+ RE
Sbjct: 146 VPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSENLPN-RTVFLIRIDDLVIARE 204

Query: 191 ARLG 194
             LG
Sbjct: 205 EVLG 208

Length = 208

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  163 bits (415), Expect = 4e-52
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 29  AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILS 88
            FA L+ ELV Y    V+   ++  RLE  GY +G R++E L  R    +R T LL +L 
Sbjct: 1   LFALLYGELVSYLLRDVE---DVNARLEKMGYNIGQRLIERLLARSGS-KRCTDLLEVLK 56

Query: 89  FVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIV 148
           F+   +WK+LFGK AD LE  T H+ EY++ + +  +++F+ +P D    N   F+ GI+
Sbjct: 57  FICKDLWKMLFGKQADVLE--TSHDGEYVLIDNDNPLSQFVELPPDYSGLNYLNFLCGII 114

Query: 149 RGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           RG L S GFPA VTAH  P+ G   P T   IKF + 
Sbjct: 115 RGALSSLGFPAKVTAHSDPLRG---PGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
KOG3315	191	consensus Transport protein particle (TRAPP) compl	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
KOG3316	163	consensus Transport protein particle (TRAPP) compl	100.0
KOG3330	183	consensus Transport protein particle (TRAPP) compl	100.0
COG1719	158	Predicted hydrocarbon binding protein (contains V4	95.47
TIGR02019	188	BchJ bacteriochlorophyll 4-vinyl reductase. This m	88.68
PF02830	62	V4R: V4R domain; InterPro: IPR004096 Central cellu	84.62

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=6e-61  Score=387.95  Aligned_cols=167  Identities=52%  Similarity=0.825  Sum_probs=159.9

Q ss_pred             hcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccc
Q 029348           25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVAD  104 (194)
Q Consensus        25 Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D  104 (194)
                      ||+|+|+|||+|||+|+++++++..|++++|+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus         1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD   80 (168)
T PTZ00391          1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD   80 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence            79999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             cccccc-CCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029348          105 SLEKGT-EHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA  183 (194)
Q Consensus       105 ~Le~~t-n~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~  183 (194)
                      +|  +| ||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+||||+++++..+. +|+|+|||+
T Consensus        81 ~L--kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~-~t~~likf~  157 (168)
T PTZ00391         81 LL--KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNF-STTILIKFY  157 (168)
T ss_pred             hh--cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCC-ceEEEEEec
Confidence            99  56 588999999999999999999999999999999999999999999999999999998776533 999999999


Q ss_pred             hHHHHHhhhcC
Q 029348          184 EEVLRREARLG  194 (194)
Q Consensus       184 ~~v~~re~~~~  194 (194)
                      ++|++||++++
T Consensus       158 ~~v~~Re~~~~  168 (168)
T PTZ00391        158 PEVIEREKSIQ  168 (168)
T ss_pred             HHHHHHHhhcC
Confidence            99999999875

>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-58  Score=366.58  Aligned_cols=187  Identities=60%  Similarity=0.957  Sum_probs=179.0

Q ss_pred             CccCCCCCCCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCcc
Q 029348            2 IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET   81 (194)
Q Consensus         2 ~~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~   81 (194)
                      +..+....+.+|+|+||+++|.|||+|+|+|||+|||+|+++++.++.|++.+|.+.||+||.||+|++..|+|.++|++
T Consensus         4 ~~~s~~~~~s~il~~~L~~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREt   83 (191)
T KOG3315|consen    4 IKASTMRIPSNILDKSLSKGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRET   83 (191)
T ss_pred             ccccccccccchhhhhhhccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHH
Confidence            33455566889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEE
Q 029348           82 RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVV  161 (194)
Q Consensus        82 ~~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~V  161 (194)
                      +++++|.||+.++|+++|||.+|.|||.+++..+|+|+|++|++++|||+|++++.+||++|+||||+|+|++.||||.|
T Consensus        84 kilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckV  163 (191)
T KOG3315|consen   84 KILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKV  163 (191)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCceEEEEEechHHHHHhhhcC
Q 029348          162 TAHFVPVEGQQRPRTTILIKFAEEVLRREARLG  194 (194)
Q Consensus       162 ta~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~  194 (194)
                      |||+.|      .+|++.|||+++|++||+.++
T Consensus       164 TAh~~P------~gt~~~IkF~~~Viare~~l~  190 (191)
T KOG3315|consen  164 TAHWHP------EGTTYLIKFDESVIAREGLLE  190 (191)
T ss_pred             eeeecC------CCCeEEEEecHHHHhhhhhhc
Confidence            999985      269999999999999999874

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=3.4e-50  Score=320.61  Aligned_cols=151  Identities=46%  Similarity=0.785  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029348           29 AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (194)
Q Consensus        29 ~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~  108 (194)
                      +|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.+.+..+|+++++|+++||||++|+++||||+|+|  
T Consensus         1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l--   77 (152)
T PF04051_consen    1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNL--   77 (152)
T ss_dssp             HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEE--
T ss_pred             CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccc--
Confidence            69999999999999944 899999999999999999999999998667899999999999999999999999999999  


Q ss_pred             ccCC-CCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechH
Q 029348          109 GTEH-EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE  185 (194)
Q Consensus       109 ~tn~-~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~  185 (194)
                      +||| +|+|+|+|++|+|++|+++|++++.++|++|+||||||||+++||+|+|||+..+.   ..|+|+|+|||++.
T Consensus        78 ~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~---~~~~~~f~Ik~~~~  152 (152)
T PF04051_consen   78 KTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL---NGPQTTFQIKFEKQ  152 (152)
T ss_dssp             EEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC---GTTEEEEEEEEEHH
T ss_pred             cccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc---CCCCeEEEEEEecC
Confidence            7898 99999999999999999999988899999999999999999999999999999854   34799999999863

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.2e-50  Score=322.85  Aligned_cols=184  Identities=41%  Similarity=0.709  Sum_probs=176.4

Q ss_pred             CCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHH
Q 029348           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSF   89 (194)
Q Consensus        10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkf   89 (194)
                      +..||+++|.-.+.+|++|+|+|||.||++|+++..+...+++.+|.++||+||.||+|++..|.++.+|+.+++++|+|
T Consensus        25 ~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~  104 (208)
T COG5128          25 GKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQR  104 (208)
T ss_pred             chhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHH
Confidence            56789999966679999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             HHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCC
Q 029348           90 VHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVE  169 (194)
Q Consensus        90 I~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~  169 (194)
                      |+.++|+++||+..|.|||..+...+|+|+||+|++++|||+|+++++++|.+|+||||+|+|.+.||+|.||||..|.+
T Consensus       105 ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~  184 (208)
T COG5128         105 IHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSE  184 (208)
T ss_pred             HHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCceEEEEEechHHHHHhhhcC
Q 029348          170 GQQRPRTTILIKFAEEVLRREARLG  194 (194)
Q Consensus       170 ~~~~p~~~f~Ik~~~~v~~re~~~~  194 (194)
                      ..++ +|+|+|+|++.|++||..++
T Consensus       185 ~~p~-Rtv~lI~~d~~vi~re~v~g  208 (208)
T COG5128         185 NLPN-RTVFLIRIDDLVIAREEVLG  208 (208)
T ss_pred             CCCc-ceEEEEEecHHHHhhhhhcC
Confidence            7666 99999999999999998775

>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-46  Score=293.88  Aligned_cols=147  Identities=26%  Similarity=0.424  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHh
Q 029348           28 SAFAFLFSELVQYNQTQVDN---------IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVL   98 (194)
Q Consensus        28 s~f~~L~~EiV~y~~~~~~~---------~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~l   98 (194)
                      .+|++|+.|||.++.+..+|         ..+..++||.|||+||++|.|+++   ++++|+.|.+|+|||||||+|+.+
T Consensus         5 v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~---~e~~rf~deLeimKFiCkDfW~~V   81 (163)
T KOG3316|consen    5 VLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT---RERNRFKDELEIMKFICKDFWSIV   81 (163)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            46999999999998886443         234779999999999999999999   578899999999999999999999


Q ss_pred             hcccccccccccCCCCeEEEEeCCcccccccccCCCCCC--cchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348           99 FGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT--FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT  176 (194)
Q Consensus        99 Fgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~--l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~  176 (194)
                      |+||+|||  +|||+|+||++|+.|+|+..+|...++..  ..|++|+||+|||+|.+||++|.|||++.     ..|+|
T Consensus        82 F~KQiDNL--rTNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~-----slPtc  154 (163)
T KOG3316|consen   82 FKKQIDNL--RTNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS-----SLPTC  154 (163)
T ss_pred             Hhhhhhhc--cccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC-----CCCce
Confidence            99999999  99999999999999999999996666532  25999999999999999999999999987     68999


Q ss_pred             EEEEEech
Q 029348          177 TILIKFAE  184 (194)
Q Consensus       177 ~f~Ik~~~  184 (194)
                      .|+|++.+
T Consensus       155 kFhV~v~~  162 (163)
T KOG3316|consen  155 KFHVQVQP  162 (163)
T ss_pred             EEEEEecC
Confidence            99999875

>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=224.25  Aligned_cols=167  Identities=14%  Similarity=0.299  Sum_probs=149.7

Q ss_pred             CcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH
Q 029348           18 LSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV   97 (194)
Q Consensus        18 ~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~   97 (194)
                      +-+.-.++|+++|+++|++||.++.+++++.++++.+|++|||+||.||+|.+++|+ +.+||.|+.++...|||..+|+
T Consensus         9 i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkm   87 (183)
T KOG3330|consen    9 IAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKM   87 (183)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhhe
Confidence            333347899999999999999999999999999999999999999999999999997 6899999999999999999999


Q ss_pred             hhcccccccccccCCCCeEEEEeCCcccccccccCC-CCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348           98 LFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK-DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT  176 (194)
Q Consensus        98 lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~-~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~  176 (194)
                      ++|.++..- .|+.+.++|.|+=.++|+..||+.|+ ..+.++|++++||+|||||+++++.|.|+  |..|-++++..|
T Consensus        88 yLgitpsit-swss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~--f~~d~lrGd~~t  164 (183)
T KOG3330|consen   88 YLGITPSIT-SWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVV--FLSDTLRGDSVT  164 (183)
T ss_pred             eeeccccee-eecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheee--eeeehhcCCCce
Confidence            999998766 37888899988755556689996665 45679999999999999999999999998  888999999899


Q ss_pred             EEEEEechHHHH
Q 029348          177 TILIKFAEEVLR  188 (194)
Q Consensus       177 ~f~Ik~~~~v~~  188 (194)
                      ++.|+|.+.+.+
T Consensus       165 EIrv~f~r~lkd  176 (183)
T KOG3330|consen  165 EIRVRFLRILKD  176 (183)
T ss_pred             eeeeeHHHHHhh
Confidence            999999987754

>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]

Probab=95.47  E-value=0.43  Score=38.33  Aligned_cols=112  Identities=17%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCccccccc
Q 029348           50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI  129 (194)
Q Consensus        50 e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~v  129 (194)
                      .....+.+.|+.+|..++.           .....++..|+.-  |...++.-.+.-   .+...+..+.|..+.    -
T Consensus        46 ~~~~~~y~~G~~~G~~l~~-----------~~~~~~~~~f~~~--~~~~~~~v~~~~---~~~~~~v~v~~c~~c----~  105 (158)
T COG1719          46 GAEPVLYEAGKEIGKALIK-----------EKLIEELENFLEF--WEEVGGGVLEVE---EEEPLVVEVYDCIEC----A  105 (158)
T ss_pred             CcHHHHHHHHHHHHHHhcc-----------hhchHHHHHHHHH--HHhhcceEEEcc---cCCCceEEEEcCchh----h
Confidence            3567788899999998886           1122234444433  887777655433   222455555555543    1


Q ss_pred             ccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029348          130 SIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (194)
Q Consensus       130 s~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~  184 (194)
                      -+|.  .+.+-..|.+|+|.|+|+...=+ .+.++=+.....+.+.|.|.|+..+
T Consensus       106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k-~~~v~Et~C~~~G~~~C~F~i~~~~  157 (158)
T COG1719         106 GLPG--IGEPVCHLEAGFIAGFLEEILGK-KVEVEETECAAEGDDRCVFEIRLKD  157 (158)
T ss_pred             cCCC--CCCcchhHHhhHHHHHHHHHhCC-CeEEEEEEEeecCCCceEEEEEecC
Confidence            2344  23456789999999999986332 2222333444557889999998754

>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase

Probab=88.68  E-value=2.4  Score=35.26  Aligned_cols=133  Identities=14%  Similarity=0.089  Sum_probs=71.8

Q ss_pred             cchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHH-HHHhhhhcCCCCCccchHHHH-------HHHHHH
Q 029348           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV-LELLCHRDKGNRRETRLLGIL-------SFVHST   93 (194)
Q Consensus        22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL-~E~l~~r~k~~~r~~~~ld~l-------kfI~k~   93 (194)
                      ..=|+.+.|.-|+..+=+.+     ..+....-|.+.|.+.|.++ ..++.-   ...+..+.++..       .-|.|+
T Consensus        41 ~~mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp~---~~q~~Lr~lp~~~~~r~l~~aI~k~  112 (188)
T TIGR02019        41 SGMLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIPP---PAQRLIRALPAGLAARVLLTAIAKH  112 (188)
T ss_pred             hhcCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhhH---HHHHHHHHCChHHHHHHHHHHHHHH
Confidence            34477777777766653322     11245566777787777777 444331   122334444443       345889


Q ss_pred             HHHHhhcccccccccccCCCCeEEEEeCCcccccc-c-----ccCCCCCCcchhhhhHHHHHHHhhhC-CCCeEEEEEEc
Q 029348           94 VWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRF-I-----SIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFV  166 (194)
Q Consensus        94 ~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~-v-----s~p~~~~~l~~~~f~~GiIrGaL~~l-g~~~~Vta~~~  166 (194)
                      +|+.-             .-|.|-.....|+..+- -     ..|.   +..-.+|-+|+++|.++.+ +=++.|.  =+
T Consensus       113 aWtf~-------------G~G~fs~~~~~~l~i~I~ds~~a~~~~~---~~P~C~~~aGife~lFs~lv~~~~~v~--Et  174 (188)
T TIGR02019       113 AWTFA-------------GSGKFRYVSGPPLSFEIARNPVVAGESS---DTPVCHWYAAVFERLLRRLVWPHVAVR--ET  174 (188)
T ss_pred             HHhhc-------------ccceEEEeeCCCeEEEEecChhhhcCCC---CCceeeeeHHHHHHHHHHHhCCCceEE--ee
Confidence            99432             11233333333321110 0     1111   2334679999999999876 5556654  33


Q ss_pred             cCCCCCCCceEEEE
Q 029348          167 PVEGQQRPRTTILI  180 (194)
Q Consensus       167 ~~~~~~~p~~~f~I  180 (194)
                      .....+.+.|.|.|
T Consensus       175 ~C~a~G~~~C~F~~  188 (188)
T TIGR02019       175 ACCAKGAPRCRFEL  188 (188)
T ss_pred             hHhhcCCCcceeeC
Confidence            34455778999974

This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.

>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains

Probab=84.62  E-value=1.4  Score=29.52  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=27.1

Q ss_pred             chhhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEEEEE
Q 029348          139 NCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTILIK  181 (194)
Q Consensus       139 ~~~~f~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f~Ik  181 (194)
                      .-..|.+|++.|+++.+ |-+..|+  =+.-...+++.|.|.|+
T Consensus        20 p~C~~~~G~~~G~~~~~~~~~~~v~--E~~C~a~G~~~C~F~i~   61 (62)
T PF02830_consen   20 PVCWFTAGYLAGFFSALFGKEVEVE--ETKCQAMGDDHCEFVIR   61 (62)
T ss_dssp             ---HHHHHHHHHHHHHHHSSEEEEE--EEE-GGGT-SSEEEEEE
T ss_pred             ceEHHHHHHHHHHHHHHhCCceEEE--EeEEEcCCCCeeEEEEE
Confidence            34579999999999765 5555544  44455668889999986

The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
2j3w_B	188	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		1e-44
2j3r_B	157	The Crystal Structure Of The Bet3-Trs31 Heterodimer		3e-41
3cue_B	283	Crystal Structure Of A Trapp Subassembly Activating		6e-20
2cfh_C	158	Structure Of The Bet3-Tpc6b Core Of Trapp Length =		5e-04
3kxc_C	158	Mutant Transport Protein Length = 158		5e-04
2bjn_A	160	X-Ray Structure Of Human Tpc6 Length = 160		5e-04

>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 188

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 7/183 (3%)
Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L
Sbjct: 10  SAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVL 69
Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS
Sbjct: 70  VMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 190
           +PK+  T NC AF  GIV  +L  +GFPA VT H+          TT++IKF E V+ R+
Sbjct: 130 VPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDESVIARD 182
Query: 191 ARL 193
             L
Sbjct: 183 KAL 185

>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 109/163 (66%), Gaps = 7/163 (4%)
Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L  R+K  +RET
Sbjct: 2   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 61
Query: 82  RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG 141
           ++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS+PK+  T NC 
Sbjct: 62  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 121
Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           AF  GIV  +L  +GFPA VT H+          TT++IKF E
Sbjct: 122 AFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDE 157

>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 283

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 75  KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
           K  RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +F  IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225
Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREA-RL 193
               +C  FV GI++G L +AGFP  VTAH +P +G    RT  LI+F  +VL RE  R 
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQFDRQVLDREGLRF 282
Query: 194 G 194
           G
Sbjct: 283 G 283

>pdb|2CFH|C Chain C, Structure Of The Bet3-Tpc6b Core Of Trapp Length = 158

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 35  KLENMGFRVGQGLIERFT---KDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 90  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141

>pdb|3KXC|C Chain C, Mutant Transport Protein Length = 158

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 35  KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 90  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141

>pdb|2BJN|A Chain A, X-Ray Structure Of Human Tpc6 Length = 160

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 37  KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 91
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 92  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	3e-79
1sz7_A	200	BET3 homolog, trafficking protein particle complex	3e-57
2bjn_A	160	TPC6, trafficking protein particle complex subunit	3e-54
3cue_B	283	Transport protein particle 31 kDa subunit; membran	4e-54
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	2e-49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3cue_D	193	Transport protein particle 22 kDa subunit; membran	8e-04

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  233 bits (596), Expect = 3e-79
 Identities = 88/193 (45%), Positives = 125/193 (64%), Gaps = 7/193 (3%)

Query: 2   IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYA 61
           + V   +  S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  
Sbjct: 1   MEVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQG 60

Query: 62  VGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEK 121
           VGA +L++L  R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EK
Sbjct: 61  VGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEK 120

Query: 122 ELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK 181
           E L+N +IS+PK+  T NC AF  GIV  +L  +GFPA VT H+          TT++IK
Sbjct: 121 EPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIK 173

Query: 182 FAEEVLRREARLG 194
           F E V+ R+  L 
Sbjct: 174 FDESVIARDKALD 186

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  178 bits (452), Expect = 3e-57
 Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 6/180 (3%)

Query: 9   QYSNVLDKPLSKGKQE--VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV 66
            + +   +  ++G +   +S   F   +  LV       +N  ++ ++L+  G+ +G R+
Sbjct: 5   HHHHGSSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRL 64

Query: 67  LELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVN 126
           +E    R     R          +    +K+  G            ++  +I E   LV+
Sbjct: 65  IEDFLARSNV-GRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD 123

Query: 127 RFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV 186
            F+ +P +  +      + G++RG L+       V A FV    +    T I ++F   +
Sbjct: 124 -FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIRMRFIRRI 180

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score =  169 bits (429), Expect = 3e-54
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNI----AELERRLEDAGYAVGARVLELLCHRDKGNRR 79
               + F  L +E+V       +           +LE+ G+ VG  ++E      K   R
Sbjct: 3   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT---KDTAR 59

Query: 80  ETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 139
               L I+ F+    W  +F K  D+L   T H+  Y++ + +  +   +S  K      
Sbjct: 60  FKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHA 117

Query: 140 CG--AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
               AF  G++RG L + G  ++VTA    +     P     +   +
Sbjct: 118 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM-----PACKFQVMIQK 159

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283

 Score =  172 bits (437), Expect = 4e-54
 Identities = 57/180 (31%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 16  KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK 75
            P S  +    LS            N   +   +               +   L  +  K
Sbjct: 109 SPSSLPRASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITK 168

Query: 76  GNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDM 135
             RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +FI      
Sbjct: 169 MRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE--- 225

Query: 136 GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREA-RLG 194
              +C  FV GI++G L +AGFP  VTAH +P  G    RT  LI+F  +VL RE  R G
Sbjct: 226 -NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLDREGLRFG 283

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score =  156 bits (396), Expect = 2e-49
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNIAELER-----RLEDAGYAVGARVLELLCHRDKGNR 78
                 F FL +E+V        +     +      LE  G+ VG  + E L        
Sbjct: 2   MADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLPRE---TL 58

Query: 79  RETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDM--G 136
                L +L F+   +W  +F K  DSL   T H+  Y++ +    +   ++        
Sbjct: 59  AFREELDVLKFLCKDLWVAVFQKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEE 116

Query: 137 TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
                AF  G++RG L + G  +VVTA          P     +   +
Sbjct: 117 APKFLAFTCGLLRGALYTLGIESVVTASV-----AALPVCKFQVVIPK 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 43/168 (25%)

Query: 1   MIGVGK-------IKQYSNVLDKP-----LSKGKQ---EVSLSAFAFLFSELVQYNQTQV 45
           ++G GK          Y            L+       E  L     L  ++     ++ 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 46  DNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFV-HSTVW-------KV 97
           D+ + ++ R+      + A +  LL  +   N     LL +L  V ++  W       K+
Sbjct: 218 DHSSNIKLRIHS----IQAELRRLLKSKPYEN----CLL-VLLNVQNAKAWNAFNLSCKI 268

Query: 98  LF----GKVADSLEKGT-------EHEDEYMISEKELLVNRFISIPKD 134
           L      +V D L   T        H       E + L+ +++     
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 51  LERRLEDAGYAVGAR--VLELLCH--------RDKGNRRETRLLGILSFVHSTVWKVLFG 100
           LE+++     A  A   +L  L           D   + E  +  IL F+      ++  
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 101 KVADSLEKGTEHEDEYMISEKELLVNR 127
           K  D L      EDE +  E    V R
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 30/188 (15%), Positives = 72/188 (38%), Gaps = 6/188 (3%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELV-QYNQTQVDNIAELERRLEDAG 59
           M+   + +    + ++      ++++   F   +  +V Q  Q    +  ++   L   G
Sbjct: 1   MVSTTQSRSLKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMG 60

Query: 60  YAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMIS 119
           Y +G R++E    R    R E  L+     +    +K+      + +   + ++D + + 
Sbjct: 61  YNIGCRLIEDFLARTALPRCEN-LVKTSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLI 118

Query: 120 EKELLVNRFISIPKD-MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTI 178
             E  +  F+ +P D M +      + G+++G L+           FV    +   +T I
Sbjct: 119 LDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLD--CDVWFVSDILRGDSQTEI 176

Query: 179 LIKFAEEV 186
            +K    +
Sbjct: 177 KVKLNRIL 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	96.35
3tfg_A	189	ALR2278 protein; heme-based sensor domain, GAS bin	84.47
2kii_A	181	Putative uncharacterized protein; H-NOX, unknown f	83.9

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=6.1e-65  Score=417.56  Aligned_cols=185  Identities=48%  Similarity=0.802  Sum_probs=160.3

Q ss_pred             ccCCCCCCCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 029348            3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR   82 (194)
Q Consensus         3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~   82 (194)
                      +++.+++.++|+||||++++.+||+|+|+|||+|||+|++++.++.+|++++|++|||+||.||+|++++|++..+||++
T Consensus         2 ~~~~~~~~~~i~~~~l~~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d   81 (188)
T 2j3w_B            2 EVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK   81 (188)
T ss_dssp             -------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred             CcccCCCCCccccCccccchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCC
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999876699999


Q ss_pred             hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEE
Q 029348           83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT  162 (194)
Q Consensus        83 ~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vt  162 (194)
                      ++|+++||||++|+++||||+|+|++.|||+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||
T Consensus        82 ~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vt  161 (188)
T 2j3w_B           82 VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVT  161 (188)
T ss_dssp             HHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEE
Confidence            99999999999999999999999975599999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCceEEEEEechHHHHHhhhcC
Q 029348          163 AHFVPVEGQQRPRTTILIKFAEEVLRREARLG  194 (194)
Q Consensus       163 a~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~  194 (194)
                      ||+       +|+|+|+|||+++|++||++|+
T Consensus       162 a~~-------~~~t~f~Ikf~~~v~~re~~~~  186 (188)
T 2j3w_B          162 VHW-------HKGTTLMIKFDESVIARDKALD  186 (188)
T ss_dssp             EEE-------SSSEEEEEEECHHHHHHHHHTC
T ss_pred             EEe-------CCCEEEEEEecHHHHHHHHhhc
Confidence            999       3699999999999999999885

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-56  Score=383.41  Aligned_cols=178  Identities=40%  Similarity=0.670  Sum_probs=149.5

Q ss_pred             CCccccccCcCCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcC--------------
Q 029348           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK--------------   75 (194)
Q Consensus        10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k--------------   75 (194)
                      +.+||||||++.+.+||+|+|+|||+|||+|+++++++.+|++++|+.|||+||.||+|++.+|++              
T Consensus        42 ~~~i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~  121 (283)
T 3cue_B           42 PSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS  121 (283)
T ss_dssp             -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred             CCcccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence            589999999999999999999999999999999999999999999999999999999999998864              


Q ss_pred             -----------------------------------------------CCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029348           76 -----------------------------------------------GNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (194)
Q Consensus        76 -----------------------------------------------~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~  108 (194)
                                                                     +++||.+++|+++||||++|+++||||+|+||+
T Consensus       122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek  201 (283)
T 3cue_B          122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK  201 (283)
T ss_dssp             -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence                                                           258999999999999999999999999999985


Q ss_pred             ccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHHHH
Q 029348          109 GTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLR  188 (194)
Q Consensus       109 ~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v~~  188 (194)
                      .++++|+|+|+|+++++++|++++    +++|++|+||||||||+++||+|+||||+.+... ..++|+|+|||+++|++
T Consensus       202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~-~~~~T~~~IkF~~~v~~  276 (283)
T 3cue_B          202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLD  276 (283)
T ss_dssp             CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSS-CTTCEEEECCCCHHHHH
T ss_pred             ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEccccc-CCCceEEEEEecHHHHh
Confidence            555669999999999999999984    5899999999999999999999999999876543 33699999999999999


Q ss_pred             Hhhh
Q 029348          189 REAR  192 (194)
Q Consensus       189 re~~  192 (194)
                      ||+.
T Consensus       277 Re~~  280 (283)
T 3cue_B          277 REGL  280 (283)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9986

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=2.6e-54  Score=346.54  Aligned_cols=150  Identities=25%  Similarity=0.329  Sum_probs=133.7

Q ss_pred             hcHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029348           25 VSLSAFAFLFSELVQYNQTQVDN-----IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (194)
Q Consensus        25 Vs~s~f~~L~~EiV~y~~~~~~~-----~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lF   99 (194)
                      ||.|+|+|||+|||+|++++.++     .++++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r--~~~r~~d~ld~l~fI~k~~Wk~~f   79 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R--ETLAFREELDVLKFLCKDLWVAVF   79 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G--GGGTTCCHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            79999999999999999998774     456799999999999999999999 5  579999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029348          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (194)
Q Consensus       100 gk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~--~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (194)
                      |||+|+|  +|||+|+|+|+|++|+|++|||+|+++.  .++|++|+||||||||+++||+|+||||++     +.|+|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~-----~~p~~~  152 (160)
T 2c0j_B           80 QKQMDSL--RTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVA-----ALPVCK  152 (160)
T ss_dssp             SSCCSEE--EECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEES-----STTCEE
T ss_pred             CCcCccc--eeCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeec-----CCCceE
Confidence            9999999  6999999999999999999999999988  789999999999999999999999999997     678999


Q ss_pred             EEEEech
Q 029348          178 ILIKFAE  184 (194)
Q Consensus       178 f~Ik~~~  184 (194)
                      |+|||.+
T Consensus       153 f~i~~~~  159 (160)
T 2c0j_B          153 FQVVIPK  159 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999976

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=1.5e-53  Score=352.54  Aligned_cols=163  Identities=20%  Similarity=0.373  Sum_probs=151.2

Q ss_pred             CcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhc
Q 029348           21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFG  100 (194)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFg  100 (194)
                      ...+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+ ..+||++++|+++||||++|+++||
T Consensus        19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~d~le~l~fI~k~~Wk~lFg   97 (200)
T 1sz7_A           19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLG   97 (200)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCSCCCHHHHHHHHHHTHHHHHHS
T ss_pred             ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhC
Confidence            458899999999999999999999999999999999999999999999999987 5799999999999999999999999


Q ss_pred             ccccccccccCCCCeEEE-EeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 029348          101 KVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL  179 (194)
Q Consensus       101 k~~D~Le~~tn~~~~y~i-~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~  179 (194)
                      ||+|+|+ +||++|+|+| +|++|+.. |+++|++++.++|++|+||||||||+++||+  ||||+++++.+++++|+|+
T Consensus        98 k~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~~  173 (200)
T 1sz7_A           98 ITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIR  173 (200)
T ss_dssp             CCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEEE
T ss_pred             CCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEEE
Confidence            9999995 5999999999 79998766 9999999999999999999999999999999  8999999998888899999


Q ss_pred             EEechHHHH
Q 029348          180 IKFAEEVLR  188 (194)
Q Consensus       180 Ik~~~~v~~  188 (194)
                      |||.++|.+
T Consensus       174 Ikf~~~v~~  182 (200)
T 1sz7_A          174 MRFIRRIED  182 (200)
T ss_dssp             EEEEEEC--
T ss_pred             EEEhhhhhh
Confidence            999998765

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=5.5e-53  Score=338.85  Aligned_cols=152  Identities=23%  Similarity=0.387  Sum_probs=128.5

Q ss_pred             chhcHHHHHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHh
Q 029348           23 QEVSLSAFAFLFSELVQYNQTQVDNIA----ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVL   98 (194)
Q Consensus        23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~----e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~l   98 (194)
                      +-||.++|+|||+|||+|++++.++.+    +++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++
T Consensus         2 ~m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r--~~~r~~~~ld~lkfI~k~~Wk~~   78 (160)
T 2bjn_A            2 SMADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K--DTARFKDELDIMKFICKDFWTTV   78 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h--ccCccCCHHHHHHHHHHHHHHHH
Confidence            358999999999999999999987654    6899999999999999999999 4  47999999999999999999999


Q ss_pred             hcccccccccccCCCCeEEEEeCCcccccccccCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348           99 FGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT  176 (194)
Q Consensus        99 Fgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~--~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~  176 (194)
                      ||||+|+|  +|||+|+|+|+|++|+|++|||+|+++.  .++|++|+||||||||+++||+|+||||++     ++|.|
T Consensus        79 fgk~~d~L--~t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~-----~~p~~  151 (160)
T 2bjn_A           79 FKKQIDNL--RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVS-----SMPAC  151 (160)
T ss_dssp             HSSCCSEE--EEEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEES-----STTCE
T ss_pred             hCCCCccc--ccCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEec-----CCCce
Confidence            99999999  6999999999999999999999999884  789999999999999999999999999986     67999


Q ss_pred             EEEEEech
Q 029348          177 TILIKFAE  184 (194)
Q Consensus       177 ~f~Ik~~~  184 (194)
                      +|+|++.+
T Consensus       152 ~F~i~~~~  159 (160)
T 2bjn_A          152 KFQVMIQK  159 (160)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEecc
Confidence            99999986

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-52  Score=342.65  Aligned_cols=163  Identities=16%  Similarity=0.327  Sum_probs=151.2

Q ss_pred             CcchhcHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029348           21 GKQEVSLSAFAFLFSELVQ-YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (194)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~-y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lF   99 (194)
                      ...+||+|+|+|||+|||+ |+++..++.++++++|++|||+||.||+|++++|+ +.+||.+++++++||||++|+++|
T Consensus        21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf   99 (193)
T 3cue_D           21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL   99 (193)
T ss_dssp             SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999 67766677899999999999999999999999997 589999999999999999999999


Q ss_pred             cccccccccccCCCCeEEE-EeCCcccccccccCCCC-CCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029348          100 GKVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDM-GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (194)
Q Consensus       100 gk~~D~Le~~tn~~~~y~i-~D~~~~~~~~vs~p~~~-~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (194)
                      |||+|+|+ +|||+|+|+| +|++|+.. |+++|+++ ..++|++|+||||||||+++||  .||||+++++.+++++|+
T Consensus       100 gk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~  175 (193)
T 3cue_D          100 NITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE  175 (193)
T ss_dssp             SCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred             CCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence            99999995 5999999999 89998766 99999998 7899999999999999999999  788889999998888999


Q ss_pred             EEEEechHHHH
Q 029348          178 ILIKFAEEVLR  188 (194)
Q Consensus       178 f~Ik~~~~v~~  188 (194)
                      |+|||.++|.+
T Consensus       176 ~~Ikf~~~v~d  186 (193)
T 3cue_D          176 IKVKLNRILKD  186 (193)
T ss_dssp             EEEECCCCCSC
T ss_pred             EEEEEhhhhhc
Confidence            99999998754

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=96.35  E-value=0.0041  Score=48.97  Aligned_cols=131  Identities=16%  Similarity=0.209  Sum_probs=78.0

Q ss_pred             cchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH-hhc
Q 029348           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV-LFG  100 (194)
Q Consensus        22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~-lFg  100 (194)
                      ...|+.+.|.+|+..+-..+.....+..     |.+.||..|..+.+.+.             +.+    +++|+. =+|
T Consensus        25 ~~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G   82 (163)
T 2oso_A           25 SKKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFG   82 (163)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCC
T ss_pred             cCcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCce
Confidence            3789999999999988766544332222     99999999998865422             222    456654 222


Q ss_pred             cccccccccc---CCCCeEEEE-eCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 029348          101 KVADSLEKGT---EHEDEYMIS-EKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT  176 (194)
Q Consensus       101 k~~D~Le~~t---n~~~~y~i~-D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~  176 (194)
                      . .+..  ..   ..++.+.|. .+++. -.   .   ..+-.-..|.+|++.|+|+.+ +.-.|.+.=+.....+++.|
T Consensus        83 ~-l~i~--~~~~~~~~~~~~i~v~~s~e-~~---~---~~~~pvC~~~~G~~aG~~s~~-~g~~~~~~E~~C~a~G~~~C  151 (163)
T 2oso_A           83 D-LEID--ENKILLKNPPYKIKLSNPPY-QW---V---SKEEPIHDFIAGILAGCLEEI-FYYYFVVNEVECVSQGKDKC  151 (163)
T ss_dssp             E-EECC--HHHHHHSCSCEEEEEESCSC-TT---C---CCSSCCCHHHHHHHHHHHHHH-HCSEEEEEEEECGGGTCSSE
T ss_pred             E-EEEE--eccccccCCcEEEEEEeCce-ee---c---CCCCceeHHHHHHHHHHHHHH-hCCCeEEEEeEeEcCCCCeE
Confidence            2 1111  11   233556555 33332 11   1   122356788899999998886 22344444555566688999


Q ss_pred             EEEEEechH
Q 029348          177 TILIKFAEE  185 (194)
Q Consensus       177 ~f~Ik~~~~  185 (194)
                      .|.++..+.
T Consensus       152 ~F~~~~~~~  160 (163)
T 2oso_A          152 VFEVKEVDE  160 (163)
T ss_dssp             EEEEEEEC-
T ss_pred             EEEEEEHHH
Confidence            999998653

>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*

Probab=84.47  E-value=1.4  Score=34.80  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=32.5

Q ss_pred             hhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHH
Q 029348          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV  186 (194)
Q Consensus       140 ~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v  186 (194)
                      +..|+.|+|+|+-+..|-+.+|+  ..+....+.+.|+|.|++.++-
T Consensus       141 l~~~~~Gli~~~A~~f~~~v~i~--~~~~~~~~~~h~~f~i~~~~~~  185 (189)
T 3tfg_A          141 LAPMVLGLLHGLGKRFQTKVEVT--QTAFRETGEDHDIFSIKYEDSN  185 (189)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEE--EEECTTTTSSSEEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEE--EEeccCCCCCeEEEEEEECCCC
Confidence            67899999999999866555554  5554444556899999998653

>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*

Probab=83.90  E-value=4.9  Score=31.43  Aligned_cols=43  Identities=7%  Similarity=0.084  Sum_probs=33.0

Q ss_pred             hhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029348          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (194)
Q Consensus       140 ~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~  184 (194)
                      ...|+.|+|+|+-+.+|-+.+|+-.  +...++...+.|.|+++.
T Consensus       138 l~~~~~Gli~~~A~~f~~~v~i~~~--~~~~~~~~h~~f~i~~~~  180 (181)
T 2kii_A          138 LCFCAEGLLFGAAQHFQQKIQISHD--TCMHTGADHCMLIIELQN  180 (181)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEEE--ECGGGTCSSEEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEE--eeccCCCCEEEEEEEecC
Confidence            6789999999999999888888732  222224568999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	3e-72
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	2e-48

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  213 bits (545), Expect = 3e-72
 Identities = 84/172 (48%), Positives = 114/172 (66%), Gaps = 7/172 (4%)

Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L  R+K  +RET
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 82  RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG 141
           ++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS+PK+  T NC 
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARL 193
           AF  GIV  +L  +GFPA VT H+          TT++IKF E V+ R+  L
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDESVIARDKAL 165

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  153 bits (387), Expect = 2e-48
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 4/164 (2%)

Query: 23  QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82
           +++S   F   +  LV       +N  ++ ++L+  GY +G R++E    R     R   
Sbjct: 1   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARS-NVGRCHD 59

Query: 83  LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGA 142
                  +    +K+  G             DE+ +  +   +  F+ +P +        
Sbjct: 60  FRETADVIAKVAFKMYLGITPSITNWSPAG-DEFSLILENNPLVDFVELPDNHSALIYSN 118

Query: 143 FVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV 186
            + G++RG L+       V A FV    +    T I ++F   +
Sbjct: 119 LLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIRMRFIRRI 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	95.74
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	89.98

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=2.1e-61  Score=388.60  Aligned_cols=166  Identities=51%  Similarity=0.851  Sum_probs=160.4

Q ss_pred             cchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcc
Q 029348           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGK  101 (194)
Q Consensus        22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk  101 (194)
                      |++||+|+|+|||+|||+|+++++++.+|++++|++|||+||.||+|++++|++..+||++++++++||||++|+++|||
T Consensus         1 k~~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk   80 (168)
T d2j3wb1           1 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGK   80 (168)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSS
T ss_pred             CchhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCc
Confidence            57999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             cccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEE
Q 029348          102 VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK  181 (194)
Q Consensus       102 ~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik  181 (194)
                      |+|+|++.++|+|+|+|+|++|+|++|||+|+++++++|++|+||||||||+++||+|+||||+.       |+|+|+||
T Consensus        81 ~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~~-------~~~~f~ik  153 (168)
T d2j3wb1          81 EADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIK  153 (168)
T ss_dssp             CCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEES-------SSEEEEEE
T ss_pred             CcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEeeC-------CCeEEEEE
Confidence            99999766889999999999999999999999999999999999999999999999999999984       58999999


Q ss_pred             echHHHHHhhhcC
Q 029348          182 FAEEVLRREARLG  194 (194)
Q Consensus       182 ~~~~v~~re~~~~  194 (194)
                      |+++|++||++|+
T Consensus       154 f~~~v~~Re~~l~  166 (168)
T d2j3wb1         154 FDESVIARDKALD  166 (168)
T ss_dssp             ECHHHHHHHHHTC
T ss_pred             ccHHHHHHHHhhc
Confidence            9999999999985

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-51  Score=324.35  Aligned_cols=159  Identities=16%  Similarity=0.324  Sum_probs=147.2

Q ss_pred             chhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccc
Q 029348           23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKV  102 (194)
Q Consensus        23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~  102 (194)
                      .+||+|+|++||+|||+|+.++.++.++++++|++|||+||.||+|++++|+ +.+||++++++++|||+++|+++|||+
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~-~~~R~~~~l~~l~fI~~~~wk~~fgk~   79 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLGIT   79 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSCCCHHHHHHHHHHTHHHHHHSCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhc-CCCccccHHHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999999999999999999999999999999987 689999999999999999999999999


Q ss_pred             ccccccccCCCCe-EEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEE
Q 029348          103 ADSLEKGTEHEDE-YMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK  181 (194)
Q Consensus       103 ~D~Le~~tn~~~~-y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik  181 (194)
                      +|+|  .+|++++ |+++++++|+..|+++|++++.++|++|+||||||||+++||+|+||  +.+|.++++|+|++.||
T Consensus        80 ~d~l--~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~--~~~d~l~gd~~~~i~v~  155 (161)
T d1wc9a_          80 PSIT--NWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAK--FVQDTLKGDGVTEIRMR  155 (161)
T ss_dssp             CEEE--CCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEE--EEECGGGTCSSEEEEEE
T ss_pred             cccc--eecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEE--EEecccCCCCceEEEEE
Confidence            9999  6788775 66666666789999999999999999999999999999999999998  66678888999999999


Q ss_pred             echHH
Q 029348          182 FAEEV  186 (194)
Q Consensus       182 ~~~~v  186 (194)
                      |.+.+
T Consensus       156 ~~~~~  160 (161)
T d1wc9a_         156 FIRRI  160 (161)
T ss_dssp             EEEEC
T ss_pred             Eeeec
Confidence            98653

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.74  E-value=0.0033  Score=47.14  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             CCcchhcHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029348           20 KGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (194)
Q Consensus        20 ~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lF   99 (194)
                      +.+..|+.+.|.++..+|..-+.....     ..-|-..||++|.++.++.            .-++.+|..+.-|=.+-
T Consensus        18 ~~~~~ip~~~f~l~~~~l~d~l~~~~~-----~~iLY~aGk~lGr~~~~k~------------~eel~~ff~~~g~G~L~   80 (152)
T d2osoa1          18 KESKKIPMPYFGLFALVIFDKVKELGS-----ETSLYEIGEEFGKMLSPKN------------IEELKKIFKLMNFGDLE   80 (152)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHC--CC-----CCCHHHHHHHHHHHHCCSS------------HHHHHHHHHHHTCCEEE
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHcCCceEE
Confidence            344668999999999887765543222     2346667888888776432            34577777666664331


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCCCcchhhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEE
Q 029348          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTI  178 (194)
Q Consensus       100 gk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs~p~~~~~l~~~~f~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f  178 (194)
                      =...+-.    ..++.+.+.-.+++.....  +    +-+-..|.+|++.|+++.+ |-+..|.  =+.....+.+.|.|
T Consensus        81 I~~~~~~----~~~~~~~~e~~~~~~~~g~--~----~~pvC~~~~G~lag~~~~~~g~~~~v~--E~~C~a~G~~~C~F  148 (152)
T d2osoa1          81 IDENKIL----LKNPPYKIKLSNPPYQWVS--K----EEPIHDFIAGILAGCLEEIFYYYFVVN--EVECVSQGKDKCVF  148 (152)
T ss_dssp             CCHHHHH----HSCSCEEEEEESCSCTTCC--C----SSCCCHHHHHHHHHHHHHHHCSEEEEE--EEECGGGTCSSEEE
T ss_pred             EEecccc----cccceEEEEEccChhhhCC--C----CCCcchhhHHHHHHHHHHHhCCceEEE--EeehhhCCCCceEE
Confidence            1111111    1234455555555422211  1    1234568899999999886 4444432  33344557889999


Q ss_pred             EEE
Q 029348          179 LIK  181 (194)
Q Consensus       179 ~Ik  181 (194)
                      .|+
T Consensus       149 ~v~  151 (152)
T d2osoa1         149 EVK  151 (152)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            986

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=89.98  E-value=0.63  Score=35.14  Aligned_cols=120  Identities=18%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccc
Q 029348           51 LERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS  130 (194)
Q Consensus        51 ~~~~Le~mGy~VG~rL~E~l~~r~k~~~r~~~~ld~lkfI~k~~W~~lFgk~~D~Le~~tn~~~~y~i~D~~~~~~~~vs  130 (194)
                      ..+-|+..|...=.++.+.+...-+ ...+.++|..|..|+..+=+.+=+-..-..+-....++++.        +.+-|
T Consensus        63 ~~~ll~~fG~~~~~~~~~~y~~~~~-g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~~~~~~~~~l~--------l~Y~S  133 (188)
T d1u55a_          63 VNEIWREVGRQNIKTFSEWFPSYFA-GRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIE--------MEYVS  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGGGTT-TCCHHHHHHHHHHHHHHHHTTSTTCCCCBCCEEEEETTEEE--------EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhc-CCCHHHHHHhhhhHHHHHHHhCCCCCCCeEEEEECCCCEEE--------EEEEe
Confidence            4566777887655566664432222 34567777788777777633221211111210111122222        22333


Q ss_pred             cCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHH
Q 029348          131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV  186 (194)
Q Consensus       131 ~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v  186 (194)
                       +.     ....|+.|+|+|+-+..|-+.+|...-. ....+.+.|.|+|+|+..+
T Consensus       134 -~R-----~l~~~~~Gli~g~A~~f~~~i~I~~~~~-~~~~~~~~~~~~i~f~n~~  182 (188)
T d1u55a_         134 -KR-----KMYDYFLGLIEGSSKFFKEEISVEEVER-GEKDGFSRLKVRIKFKNPV  182 (188)
T ss_dssp             -TT-----CCHHHHHHHHHHHHHHHTCCEEEEEEEE-EEETTEEEEEEEEEESSCC
T ss_pred             -CC-----ChHHHHHHHHHHHHHHhCCceEEEEeec-cccCCccEEEEEEEEEchh
Confidence             22     2467999999999999999888874221 2233455899999998643