Citrus Sinensis ID: 029356

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAMLAAKQLS
Secondary Structure (PSIPRED)
cccccEEEEEccccHHHHHHHHHHHHHccccccccccEEEccEEEEcccccccEEEEEcHHHHcccccHHHHHHHHHHccEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccHHHHHHHHHHHHHHHcccccccccEEEEEccEEEEEcccccEEEEcHHHHccccccHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHccccccHHHHHHHHHHccccccccccHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTSAQQGFYFVGKGSSEVMKQKFRDLigeheagpqEVEVVMGRklqvplgangcayfefeelcdkplgaadyFGLFKIFHTLAlegipifglhnrTAAYRFVTLVDVMYENRARLLctaegspfqlfnkivtisdaqqmaprtssrsmrndeadlcvdnelgfakdRTISRLTEMNSKEYLEQHAAMLAAKQLS
Flexible Loop (DISEMBL)
mtsaqqgfyfvgkgsseVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQqmaprtssrsmrndeadlcvdnelgfakdrtISRLTEMNSKEYLEQHAAMLAAKQLS
Low Complexity Region (SEG)
MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAMLAAKQLS
Disordered region (IsUnstruct)
*******FYFVG**********FRDLIG******QEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTIS*********************CVDNELGF*******************************
Disordered Region (DISOPRED)
*TSAQQGFYFVGKGSSEVMKQKFRDLIGE*E**PQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTI**********************CVDNELGFAKDRTISRLTEMNSKEYLE************
Disordered Region (DISEMBL)
MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDA*************NDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAA********
Disordered Region (DISPRO)
**SAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIV********************EAD*CVDNELGFAKDRTISRLTEMNSKEYLEQHAAML******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAMLAAKQLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q3V384	480	Lactation elevated protei	yes	no	0.922	0.372	0.335	6e-20
Q8WV93	481	Lactation elevated protei	yes	no	0.943	0.380	0.324	2e-19
P46441	464	Putative ATPase N2B OS=Ha	N/A	no	0.654	0.273	0.4	2e-19
Q32PX9	480	Lactation elevated protei	yes	no	0.922	0.372	0.318	6e-18
O42895	454	Uncharacterized protein C	yes	no	0.886	0.378	0.257	9e-14
Q5TYS0	503	Lactation elevated protei	no	no	0.695	0.268	0.306	8e-12
P32317	509	Protein AFG1 OS=Saccharom	yes	no	0.726	0.277	0.261	1e-09
P64612	375	Uncharacterized protein Y	N/A	no	0.530	0.274	0.265	7e-07
P64613	375	Uncharacterized protein Y	N/A	no	0.530	0.274	0.265	7e-07

>sp|Q3V384|LACE1_MOUSE Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHE---AGPQEVEVVMGRKLQVPLGANGCAYF 57
           +  A + +Y   +   E +  K  D + + +     P+ ++V  GR+L++       A  
Sbjct: 288 LAPAGKLYYLTSEADVEAVVDKLFDELAQKQNDLTSPRILKV-QGRELRLNKACGSVADC 346

Query: 58  EFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLC 117
            FEELC++PLGA+DY  L K F T+ +  IP F L  RT A RF+TL+D  Y+ + R++C
Sbjct: 347 TFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITLIDNFYDFKVRIIC 406

Query: 118 TAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV--DNELGFAKDRTISRLTEM 175
           +A      LF      S++ Q         +  D A L +    E  FA  RTISRLTEM
Sbjct: 407 SASAPISSLFLHQHQDSESDQSRILMDDLGLSQDSAGLSMFTGEEEIFAFQRTISRLTEM 466

Query: 176 NSKEY 180
            +++Y
Sbjct: 467 QTEQY 471

Mus musculus (taxid: 10090)

>sp|Q8WV93|LACE1_HUMAN Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 5/188 (2%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFE 58
           + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A   
Sbjct: 288 LPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCT 347

Query: 59  FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
           FEELC++PLGA+DY  L K F T+ L  IP F L NRT   RF+TL+D  Y+ + R++C+
Sbjct: 348 FEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICS 407

Query: 119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFAKDRTISRLTEM 175
           A      LF      S+ +Q         +  D A+   +    E  FA  RTISRLTEM
Sbjct: 408 ASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFAFQRTISRLTEM 467

Query: 176 NSKEYLEQ 183
            +++Y  +
Sbjct: 468 QTEQYWNE 475

Homo sapiens (taxid: 9606)

>sp|P46441|N2B_HAEIR Putative ATPase N2B OS=Haematobia irritans PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 3/130 (2%)

Query: 59  FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
           FEELC++PLG +DY  + + FHT+ +  +P   L  ++   RF+TL+D +Y+NR R++ +
Sbjct: 332 FEELCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDTLYDNRVRVVIS 391

Query: 119 AEGSPFQLF---NKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEM 175
           AE    QLF   +K   ++D Q+M          +  A +    E  FA DRTISRL EM
Sbjct: 392 AEVPLDQLFSFTDKPKDLADEQRMLMDDLKLGDTDTSASVFTGEEEMFAFDRTISRLYEM 451

Query: 176 NSKEYLEQHA 185
             KEY EQ A
Sbjct: 452 QKKEYWEQWA 461

Haematobia irritans (taxid: 7368)

>sp|Q32PX9|LACE1_RAT Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 6/185 (3%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHE---AGPQEVEVVMGRKLQVPLGANGCAYF 57
           +T A + +Y   +     +  K  D + + +     P+ ++V  GR+L++       A  
Sbjct: 288 LTPAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILKV-QGRELRLNKACGTVADC 346

Query: 58  EFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLC 117
            FEELC++PLGA+DY  L K F T+ +  IP F L  RT   RF+TL+D  Y+ + R++C
Sbjct: 347 TFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITLIDNFYDFKVRIIC 406

Query: 118 TAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV--DNELGFAKDRTISRLTEM 175
           +A      LF      S++ Q         +  D A L +    E  F+  RT+SRLTEM
Sbjct: 407 SASVPISSLFVYQHQDSESDQSRVLMDDLGLSQDSAGLSMFTGEEEIFSFQRTLSRLTEM 466

Query: 176 NSKEY 180
            +++Y
Sbjct: 467 QTEQY 471

Rattus norvegicus (taxid: 10116)

>sp|O42895|YBQ2_SCHPO Uncharacterized protein C115.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.02c PE=3 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 22/194 (11%)

Query: 1   MTSAQQGFYFVGKGSSEVMK---QKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYF 57
           + S  +  Y     S EV K     F     E +   Q+   V GRK+ VP  +   A+F
Sbjct: 269 LKSKTEDTYLYPANSPEVKKALENWFLCYADEKDPAHQDEVEVFGRKIIVPKASGNVAWF 328

Query: 58  EFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLC 117
            FE+LC +P  AADY  L   +H   +  IP   + ++   +RF+T +D +Y+   +L+ 
Sbjct: 329 TFEQLCGEPKSAADYLSLASRYHVFIVSDIPKLSIESKDLIHRFITFIDALYDTHGKLIL 388

Query: 118 TAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDN---------ELGFAKDRT 168
           ++E          V + +    AP     S  +  A   +++         E  F   R 
Sbjct: 389 SSE----------VPVQEIYPTAPSEVLSSTADPAAKGKIESHYHGAFGGIEEVFTFTRC 438

Query: 169 ISRLTEMNSKEYLE 182
           +SRL+EM  + ++ 
Sbjct: 439 LSRLSEMKKQSWIH 452

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5TYS0|LCE1B_DANRE Lactation elevated protein 1 homolog B OS=Danio rerio GN=lace1b PE=2 SV=1

 Score = 70.1 bits (170), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 15/150 (10%)

Query: 40  VMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAY 99
           V GR++ +       A   F+ELC++PLGA DY  + + F T+ +  +P   L  +  A 
Sbjct: 351 VQGREVTLSRTCGTIADCSFQELCEQPLGAGDYLEIARCFDTVIIRNVPYLQLGMKDQAR 410

Query: 100 RFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRN-----DEAD 154
           RF TL+D  Y+ + R++  A+    +L ++       Q        R M +     DEA 
Sbjct: 411 RFTTLIDNFYDQKVRVVMLADAPLDRLLDQ------GQMTGEEARDRLMLDELGLTDEAS 464

Query: 155 ----LCVDNELGFAKDRTISRLTEMNSKEY 180
               L   +E  FA  RT+SRL EM +++Y
Sbjct: 465 KRITLFTADEEIFAFQRTVSRLAEMQTEQY 494

Danio rerio (taxid: 7955)

>sp|P32317|AFG1_YEAST Protein AFG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AFG1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 27/168 (16%)

Query: 39  VVMGRKLQVP-LGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTA 97
            + GR+ +VP       A F F++LC +PL A DY  L K F    +  IP   ++ R  
Sbjct: 343 TIWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKNFEAFIVTDIPYLSIYVRDE 402

Query: 98  AYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV 157
             RF+T +D +Y++  +L  T       LF +   I +  ++ P T       D  D  +
Sbjct: 403 VRRFITFLDAVYDSGGKLATTGAADFSSLFVEPEQILNDFELRPTTKE----PDSVDTGM 458

Query: 158 DNEL----GFAKD------------------RTISRLTEMNSKEYLEQ 183
            +E+    GF+K+                  R +SRL++M+S +++ +
Sbjct: 459 VDEMVEKHGFSKEIAKKSQMFALDEERFAFARALSRLSQMSSTDWVTK 506

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P64612|YHCM_ECOLI Uncharacterized protein YhcM OS=Escherichia coli (strain K12) GN=yhcM PE=1 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 29/132 (21%)

Query: 52  NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYEN 111
           N      F  LC       DY  L ++FHT+ L  +P+      + A RF+ LVD  YE 
Sbjct: 268 NQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYER 327

Query: 112 RARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISR 171
             +L+ +AE   ++++                               + L F   R +SR
Sbjct: 328 HVKLVVSAEVPLYEIYQ-----------------------------GDRLKFEFQRCLSR 358

Query: 172 LTEMNSKEYLEQ 183
           L EM S+EYL++
Sbjct: 359 LQEMQSEEYLKR 370

Escherichia coli (strain K12) (taxid: 83333)

>sp|P64613|YHCM_ECO57 Uncharacterized protein YhcM OS=Escherichia coli O157:H7 GN=yhcM PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 29/132 (21%)

Query: 52  NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYEN 111
           N      F  LC       DY  L ++FHT+ L  +P+      + A RF+ LVD  YE 
Sbjct: 268 NQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYER 327

Query: 112 RARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISR 171
             +L+ +AE   ++++                               + L F   R +SR
Sbjct: 328 HVKLVVSAEVPLYEIYQ-----------------------------GDRLKFEFQRCLSR 358

Query: 172 LTEMNSKEYLEQ 183
           L EM S+EYL++
Sbjct: 359 LQEMQSEEYLKR 370

Escherichia coli O157:H7 (taxid: 83334)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224143875	507	predicted protein [Populus trichocarpa]	1.0	0.382	0.850	3e-94
147798963	504	hypothetical protein VITISV_002904 [Viti	1.0	0.384	0.845	5e-94
297743712	504	unnamed protein product [Vitis vinifera]	1.0	0.384	0.845	9e-94
225445752	502	PREDICTED: lactation elevated protein 1	1.0	0.386	0.845	1e-93
255585477	379	atpase n2b, putative [Ricinus communis]	0.989	0.506	0.833	2e-92
449518075	502	PREDICTED: lactation elevated protein 1-	0.989	0.382	0.822	7e-90
449457857	497	PREDICTED: lactation elevated protein 1-	0.989	0.386	0.822	1e-89
79325316	473	AFG1-like protein [Arabidopsis thaliana]	1.0	0.410	0.788	3e-87
297803274	474	ATPase [Arabidopsis lyrata subsp. lyrata	1.0	0.409	0.783	1e-86
297798920	497	hypothetical protein ARALYDRAFT_491701 [	0.953	0.372	0.817	2e-86

>gi|224143875|ref|XP_002325105.1| predicted protein [Populus trichocarpa] gi|118487180|gb|ABK95418.1| unknown [Populus trichocarpa] gi|222866539|gb|EEF03670.1| predicted protein [Populus trichocarpa]

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/194 (85%), Positives = 179/194 (92%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           MTSAQ GFYFVGK SS ++KQKF+ LIGE +A PQEVEVVMGR LQVPLGANGCAYF FE
Sbjct: 294 MTSAQHGFYFVGKESSSLLKQKFQQLIGEEKACPQEVEVVMGRTLQVPLGANGCAYFPFE 353

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           ELCDKPLGAADYFGLF  FHTLALEG+PIFGLHNRTAAYRFVTLVDV+YENRA LLCTAE
Sbjct: 354 ELCDKPLGAADYFGLFNNFHTLALEGVPIFGLHNRTAAYRFVTLVDVIYENRAILLCTAE 413

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP +LF++IVTI+DAQQMAPRTS+RS +ND++DLCVDNELGF KDRTISRLTEMNSKEY
Sbjct: 414 GSPLELFDRIVTIADAQQMAPRTSTRSRKNDDSDLCVDNELGFTKDRTISRLTEMNSKEY 473

Query: 181 LEQHAAMLAAKQLS 194
           LEQHAAMLA KQLS
Sbjct: 474 LEQHAAMLAEKQLS 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798963|emb|CAN65875.1| hypothetical protein VITISV_002904 [Vitis vinifera]

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 164/194 (84%), Positives = 179/194 (92%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           MTSA+QGF+F+ K +S ++KQKF+ LIGEH A PQEVEVVMGRKLQ+PLGANGCAYF FE
Sbjct: 300 MTSAEQGFFFIEKDASGLVKQKFQHLIGEHTAVPQEVEVVMGRKLQIPLGANGCAYFPFE 359

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           +LCDKPLGAADYFGLF  FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct: 360 DLCDKPLGAADYFGLFXKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 419

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP QLF +IVTI+DAQ MAPRTSSRS +ND+ DLCVDNELGFAKDRTISRLTEMNSKEY
Sbjct: 420 GSPLQLFERIVTIADAQNMAPRTSSRSRKNDDFDLCVDNELGFAKDRTISRLTEMNSKEY 479

Query: 181 LEQHAAMLAAKQLS 194
           LEQHAAMLA KQLS
Sbjct: 480 LEQHAAMLAEKQLS 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743712|emb|CBI36595.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 164/194 (84%), Positives = 179/194 (92%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           MTSA+QGF+F+ K +S ++KQKF+ LIGEH A PQEVEVVMGRKLQ+ LGANGCAYF FE
Sbjct: 300 MTSAEQGFFFIEKDASGLVKQKFQHLIGEHTAVPQEVEVVMGRKLQISLGANGCAYFPFE 359

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           +LCDKPLGAADYFGLFK FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct: 360 DLCDKPLGAADYFGLFKKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 419

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP QLF +IVTI+DAQ MAPRTSSRS +ND+ DLCVDNELGFAKDRTISRLTEMNSKEY
Sbjct: 420 GSPLQLFERIVTIADAQNMAPRTSSRSRKNDDFDLCVDNELGFAKDRTISRLTEMNSKEY 479

Query: 181 LEQHAAMLAAKQLS 194
           LEQHAAMLA KQLS
Sbjct: 480 LEQHAAMLAEKQLS 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445752|ref|XP_002271848.1| PREDICTED: lactation elevated protein 1 [Vitis vinifera]

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/194 (84%), Positives = 179/194 (92%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           MTSA+QGF+F+ K +S ++KQKF+ LIGEH A PQEVEVVMGRKLQ+ LGANGCAYF FE
Sbjct: 298 MTSAEQGFFFIEKDASGLVKQKFQHLIGEHTAVPQEVEVVMGRKLQISLGANGCAYFPFE 357

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           +LCDKPLGAADYFGLFK FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct: 358 DLCDKPLGAADYFGLFKKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 417

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP QLF +IVTI+DAQ MAPRTSSRS +ND+ DLCVDNELGFAKDRTISRLTEMNSKEY
Sbjct: 418 GSPLQLFERIVTIADAQNMAPRTSSRSRKNDDFDLCVDNELGFAKDRTISRLTEMNSKEY 477

Query: 181 LEQHAAMLAAKQLS 194
           LEQHAAMLA KQLS
Sbjct: 478 LEQHAAMLAEKQLS 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585477|ref|XP_002533431.1| atpase n2b, putative [Ricinus communis] gi|223526719|gb|EEF28951.1| atpase n2b, putative [Ricinus communis]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/192 (83%), Positives = 177/192 (92%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           MTSAQQGFYF+G+  S+++K+KF++LI E  AGPQEVEVVMGR LQVPLGANGCAYF+FE
Sbjct: 175 MTSAQQGFYFIGENLSDLLKEKFQELIVEQTAGPQEVEVVMGRTLQVPLGANGCAYFDFE 234

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           ELCDKPLGAADYFGLFK FHTLALEGIPIFG HNRTAAYRFVTLVDVMYENRARLLCTAE
Sbjct: 235 ELCDKPLGAADYFGLFKNFHTLALEGIPIFGQHNRTAAYRFVTLVDVMYENRARLLCTAE 294

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP +LF K++T+SDAQQ APRT++RS RNDEADLCVDNELGFAKDRT+SRLTEMNS+EY
Sbjct: 295 GSPLELFAKVITVSDAQQRAPRTATRSRRNDEADLCVDNELGFAKDRTVSRLTEMNSREY 354

Query: 181 LEQHAAMLAAKQ 192
           LEQHA  LA KQ
Sbjct: 355 LEQHATALAEKQ 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518075|ref|XP_004166069.1| PREDICTED: lactation elevated protein 1-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 175/192 (91%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           +TSA+QGFYFVGK SS  +KQKF+ LIG+   GPQEVEVVMGR LQVPLGANGCAYF FE
Sbjct: 298 LTSAEQGFYFVGKDSSIFLKQKFQQLIGKSIPGPQEVEVVMGRVLQVPLGANGCAYFPFE 357

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           ELCDKPLGAADYFGLFK FHTLAL+G+PIFGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct: 358 ELCDKPLGAADYFGLFKKFHTLALDGVPIFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 417

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP +L  KIVTISDAQQ+APRTS+RS +ND +DLCVDNELGFAKDRTISRLTE+NSKEY
Sbjct: 418 GSPQELLEKIVTISDAQQIAPRTSTRSRKNDVSDLCVDNELGFAKDRTISRLTEINSKEY 477

Query: 181 LEQHAAMLAAKQ 192
           LEQHA ++A K+
Sbjct: 478 LEQHAELVAEKR 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457857|ref|XP_004146664.1| PREDICTED: lactation elevated protein 1-like [Cucumis sativus]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 175/192 (91%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           +TSA+QGFYFVGK SS  +KQKF+ LIG+   GPQEVEVVMGR LQVPLGANGCAYF FE
Sbjct: 293 LTSAEQGFYFVGKDSSIFLKQKFQQLIGKSIPGPQEVEVVMGRVLQVPLGANGCAYFPFE 352

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           ELCDKPLGAADYFGLFK FHTLAL+G+PIFGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct: 353 ELCDKPLGAADYFGLFKKFHTLALDGVPIFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 412

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP +L  KIVTISDAQQ+APRTS+RS +ND +DLCVDNELGFAKDRTISRLTE+NSKEY
Sbjct: 413 GSPQELLEKIVTISDAQQIAPRTSTRSRKNDVSDLCVDNELGFAKDRTISRLTEINSKEY 472

Query: 181 LEQHAAMLAAKQ 192
           LEQHA ++A K+
Sbjct: 473 LEQHAELVAEKR 484

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325316|ref|NP_001031737.1| AFG1-like protein [Arabidopsis thaliana] gi|53850477|gb|AAU95415.1| At4g28070 [Arabidopsis thaliana] gi|56790192|gb|AAW30013.1| At4g28070 [Arabidopsis thaliana] gi|332660035|gb|AEE85435.1| AFG1-like protein [Arabidopsis thaliana]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 173/194 (89%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           +TSA++GFYF+GK  S ++KQKF+ L+G+  AGPQ VEVVMGRKLQVPL A+GCAYF FE
Sbjct: 279 LTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLAADGCAYFLFE 338

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           ELCD+PLGAADY GLFK FHTLALEG+P FGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct: 339 ELCDRPLGAADYLGLFKKFHTLALEGVPFFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 398

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           GSP +L  +IVTISDAQQ+APRTSSRS ++D+ DLCVDNELGFAKDRTISRLTEMNSKEY
Sbjct: 399 GSPLELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTISRLTEMNSKEY 458

Query: 181 LEQHAAMLAAKQLS 194
           LEQH+ ML  KQ S
Sbjct: 459 LEQHSRMLQEKQPS 472

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803274|ref|XP_002869521.1| ATPase [Arabidopsis lyrata subsp. lyrata] gi|297315357|gb|EFH45780.1| ATPase [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/194 (78%), Positives = 172/194 (88%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           +TSA++GFYF+GK  S ++KQKF+ L+G+  AGPQ VEVVMGRKLQVPL A+GCAYF FE
Sbjct: 280 LTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLAADGCAYFLFE 339

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           ELCD+PLGAADY GLFK FHTLALEG+PIFGLHNRTAAYRFVTLVDVMYE +ARLLCTAE
Sbjct: 340 ELCDRPLGAADYLGLFKKFHTLALEGVPIFGLHNRTAAYRFVTLVDVMYETKARLLCTAE 399

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
           G P +L  +IVTISDAQQ+APRTSSRS ++D+ DLCVDNELGFAKDRTISRLTEMNSKEY
Sbjct: 400 GGPIELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTISRLTEMNSKEY 459

Query: 181 LEQHAAMLAAKQLS 194
           LEQH+ ML  KQ S
Sbjct: 460 LEQHSRMLQEKQPS 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798920|ref|XP_002867344.1| hypothetical protein ARALYDRAFT_491701 [Arabidopsis lyrata subsp. lyrata] gi|297313180|gb|EFH43603.1| hypothetical protein ARALYDRAFT_491701 [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 169/186 (90%), Gaps = 1/186 (0%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHE-AGPQEVEVVMGRKLQVPLGANGCAYFEF 59
           +TSA+QGFYF+GK  S ++KQKF+ LIG++  A PQ VEVVMGRKLQ+PLGANGCAYF F
Sbjct: 307 LTSAEQGFYFIGKDLSTLLKQKFQQLIGDNVVARPQVVEVVMGRKLQIPLGANGCAYFPF 366

Query: 60  EELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTA 119
           E+LCD+PLGAADYFGLFK FHTLALEGIP+FGLHNRTAAYRFVTLVDVMYENRARLLCTA
Sbjct: 367 EDLCDRPLGAADYFGLFKKFHTLALEGIPVFGLHNRTAAYRFVTLVDVMYENRARLLCTA 426

Query: 120 EGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKE 179
           E SPF+L  KIVTIS+A+ MAPRTSSRS +ND  +LCVDNELGFAKDRTISRLTEMNSKE
Sbjct: 427 EASPFELLEKIVTISEAKSMAPRTSSRSRKNDVTELCVDNELGFAKDRTISRLTEMNSKE 486

Query: 180 YLEQHA 185
           YLEQHA
Sbjct: 487 YLEQHA 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2133007	473	AT4G28070 [Arabidopsis thalian	1.0	0.410	0.788	3.7e-80
TAIR|locus:2118786	497	AT4G30490 [Arabidopsis thalian	0.953	0.372	0.790	1.5e-76
DICTYBASE|DDB_G0292852	527	DDB_G0292852 "putative ATPase"	0.927	0.341	0.349	1.9e-22
MGI|MGI:2148801	480	Lace1 "lactation elevated 1" [	0.881	0.356	0.340	3.5e-20
UNIPROTKB|H0Y5F4	349	LACE1 "Lactation elevated prot	0.927	0.515	0.329	4.4e-20
UNIPROTKB|Q8WV93	481	LACE1 "Lactation elevated prot	0.927	0.374	0.329	2.1e-19
UNIPROTKB|E1C0S7	493	LACE1 "Uncharacterized protein	0.922	0.363	0.322	2.9e-19
UNIPROTKB|E1BQ18	480	LACE1 "Uncharacterized protein	0.927	0.375	0.329	3.5e-19
RGD|1561501	480	Lace1 "lactation elevated 1" [	0.922	0.372	0.324	9.5e-19
UNIPROTKB|F1PD84	480	LACE1 "Uncharacterized protein	0.927	0.375	0.318	3.4e-18

TAIR|locus:2133007 AT4G28070 [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 153/194 (78%), Positives = 173/194 (89%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
             +TSA++GFYF+GK  S ++KQKF+ L+G+  AGPQ VEVVMGRKLQVPL A+GCAYF FE
Sbjct:   279 LTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLAADGCAYFLFE 338

Query:    61 ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
             ELCD+PLGAADY GLFK FHTLALEG+P FGLHNRTAAYRFVTLVDVMYEN+ARLLCTAE
Sbjct:   339 ELCDRPLGAADYLGLFKKFHTLALEGVPFFGLHNRTAAYRFVTLVDVMYENKARLLCTAE 398

Query:   121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
             GSP +L  +IVTISDAQQ+APRTSSRS ++D+ DLCVDNELGFAKDRTISRLTEMNSKEY
Sbjct:   399 GSPLELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTISRLTEMNSKEY 458

Query:   181 LEQHAAMLAAKQLS 194
             LEQH+ ML  KQ S
Sbjct:   459 LEQHSRMLQEKQPS 472

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISS

TAIR|locus:2118786 AT4G30490 [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 147/186 (79%), Positives = 165/186 (88%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHE-AGPQEVEVVMGRKLQVPLGANGCAYFEF 59
             +TSA+QGFYF+GK  S ++KQKFR LIG++  A PQ VEVVMGRKLQ+PLGANGCAYF F
Sbjct:   307 LTSAEQGFYFIGKDLSTLLKQKFRQLIGDNVVARPQVVEVVMGRKLQIPLGANGCAYFPF 366

Query:    60 EELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTA 119
             EELCD+PLGAADYFGLFK FHTLAL+ IP+FGLHNRTAAYRFVTLVDVMYENRARLLCTA
Sbjct:   367 EELCDRPLGAADYFGLFKKFHTLALDEIPVFGLHNRTAAYRFVTLVDVMYENRARLLCTA 426

Query:   120 EGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKE 179
             E +P +L  KI+TIS+A+ M PRTSSRS +ND  +LCVDNELGFAKDRTISRLTEMNSKE
Sbjct:   427 EANPQELLEKIITISEAKSMGPRTSSRSRKNDVTELCVDNELGFAKDRTISRLTEMNSKE 486

Query:   180 YLEQHA 185
             YLE HA
Sbjct:   487 YLEHHA 492

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISS

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

DICTYBASE|DDB_G0292852 DDB_G0292852 "putative ATPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 64/183 (34%), Positives = 92/183 (50%)

Query:     2 TSAQQGFYFVGKGSSEV--MKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGA-NGCAYFE 58
             T  ++ FY+    S EV    Q F  L        +++ +  GRK+  P    +  A F+
Sbjct:   341 TRTKKVFYYPSSSSKEVADFNQLFIQLSKGEPMESKQLVLSTGRKVNCPRTVLDSIALFD 400

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             F ELCD  LGA DY  L K FHT+ LE IP+    ++  A RF+ LVDV+YE++ +L+CT
Sbjct:   401 FYELCDNALGADDYIELSKQFHTIFLENIPLMNESSKNQARRFIILVDVLYEHKVKLICT 460

Query:   119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSK 178
             A  SP QLF    + ++   +        +  ++       E  F   R +SRL EM S 
Sbjct:   461 AASSPAQLFMSEGSNTNTSDVLQLADDLKLTPEQLSRFTGEEERFMFSRAVSRLVEMQSD 520

Query:   179 EYL 181
             EYL
Sbjct:   521 EYL 523

GO:0005524 "ATP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

MGI|MGI:2148801 Lace1 "lactation elevated 1" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 61/179 (34%), Positives = 94/179 (52%)

Query:     8 FYFVGKGSSEVMKQKFRDLIGEHE---AGPQEVEVVMGRKLQVPLGANGCAYFEFEELCD 64
             +Y   +   E +  K  D + + +     P+ ++V  GR+L++       A   FEELC+
Sbjct:   295 YYLTSEADVEAVVDKLFDELAQKQNDLTSPRILKV-QGRELRLNKACGSVADCTFEELCE 353

Query:    65 KPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPF 124
             +PLGA+DY  L K F T+ +  IP F L  RT A RF+TL+D  Y+ + R++C+A     
Sbjct:   354 RPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITLIDNFYDFKVRIICSASAPIS 413

Query:   125 QLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV---DNELGFAKDRTISRLTEMNSKEY 180
              LF      S++ Q         +  D A L +   + E+ FA  RTISRLTEM +++Y
Sbjct:   414 SLFLHQHQDSESDQSRILMDDLGLSQDSAGLSMFTGEEEI-FAFQRTISRLTEMQTEQY 471

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H0Y5F4 LACE1 "Lactation elevated protein 1" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 61/185 (32%), Positives = 93/185 (50%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFE 58
             + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A   
Sbjct:   156 LPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCT 215

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             FEELC++PLGA+DY  L K F T+ L  IP F L NRT   RF+TL+D  Y+ + R++C+
Sbjct:   216 FEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICS 275

Query:   119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFAKDRTISRLTEM 175
             A      LF      S+ +Q         +  D A+   +    E  FA  RTISRLTEM
Sbjct:   276 ASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFAFQRTISRLTEM 335

Query:   176 NSKEY 180
              +++Y
Sbjct:   336 QTEQY 340

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8WV93 LACE1 "Lactation elevated protein 1" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 61/185 (32%), Positives = 93/185 (50%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFE 58
             + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A   
Sbjct:   288 LPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCT 347

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             FEELC++PLGA+DY  L K F T+ L  IP F L NRT   RF+TL+D  Y+ + R++C+
Sbjct:   348 FEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICS 407

Query:   119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFAKDRTISRLTEM 175
             A      LF      S+ +Q         +  D A+   +    E  FA  RTISRLTEM
Sbjct:   408 ASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFAFQRTISRLTEM 467

Query:   176 NSKEY 180
              +++Y
Sbjct:   468 QTEQY 472

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C0S7 LACE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 60/186 (32%), Positives = 94/186 (50%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFE 58
             + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A F 
Sbjct:   298 LPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADFT 357

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             FEELCD+PLGA+DY  + K F T+ +  IP   +  RT A RF+TL+D  YE++ R++C+
Sbjct:   358 FEELCDRPLGASDYLEISKHFDTVFVRDIPPLTMAKRTQARRFITLIDTFYEHKVRIICS 417

Query:   119 AEGSPFQ-LFNKIVTISDAQQMAPRTSSRSMRNDEA---DLCVDNELGFAKDRTISRLTE 174
             A  +P Q LF       + +          +  D A    +    E  FA  RTISRLTE
Sbjct:   418 A-ATPLQSLFVVEAGSIELEDSRVLMDDLDLSQDSAKGLSMFTGEEEIFAFQRTISRLTE 476

Query:   175 MNSKEY 180
             M +++Y
Sbjct:   477 MQTEQY 482

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BQ18 LACE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 61/185 (32%), Positives = 93/185 (50%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFE 58
             + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A   
Sbjct:   287 LPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCT 346

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             FEELC++PLGA+DY  L K F T+ L  IP F L  RT A RF+TL+D  Y+ + R++C+
Sbjct:   347 FEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTQARRFITLIDNFYDFKVRIICS 406

Query:   119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFAKDRTISRLTEM 175
             A      LF      S+ +Q         +  D A+   +    E  FA  RTISRLTEM
Sbjct:   407 ASAPVSSLFLCDHHDSELEQSRILMDDLGLSQDSAEGLAMFTGEEEIFAFQRTISRLTEM 466

Query:   176 NSKEY 180
              +++Y
Sbjct:   467 QTEQY 471

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1561501 Lace1 "lactation elevated 1" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 9.5e-19, P = 9.5e-19
 Identities = 60/185 (32%), Positives = 96/185 (51%)

Query:     1 MTSAQQGFYFVGKGS-SEVMKQKFRDLIG-EHEAGPQEVEVVMGRKLQVPLGANGCAYFE 58
             +T A + +Y   +     VM + F +L   +++     +  V GR+L++       A   
Sbjct:   288 LTPAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGTVADCT 347

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             FEELC++PLGA+DY  L K F T+ +  IP F L  RT   RF+TL+D  Y+ + R++C+
Sbjct:   348 FEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITLIDNFYDFKVRIICS 407

Query:   119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCV---DNELGFAKDRTISRLTEM 175
             A      LF      S++ Q         +  D A L +   + E+ F+  RT+SRLTEM
Sbjct:   408 ASVPISSLFVYQHQDSESDQSRVLMDDLGLSQDSAGLSMFTGEEEI-FSFQRTLSRLTEM 466

Query:   176 NSKEY 180
              +++Y
Sbjct:   467 QTEQY 471

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|F1PD84 LACE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 59/185 (31%), Positives = 92/185 (49%)

Query:     1 MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFE 58
             + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A   
Sbjct:   287 LPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCT 346

Query:    59 FEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCT 118
             FEELC++PLGA+DY  L K F T+ L  IP F L  RT A RF+TL+D  Y+ + R++C+
Sbjct:   347 FEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTQARRFITLIDNFYDFKVRVICS 406

Query:   119 AEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEAD---LCVDNELGFAKDRTISRLTEM 175
             A      LF      S+ +          +  D A+   +    E  FA  RT+SRLTEM
Sbjct:   407 ASTPIASLFLHQHHDSELEHSRILMDDLGLSQDSAEGLSMFTGEEEIFAFQRTLSRLTEM 466

Query:   176 NSKEY 180
              +++Y
Sbjct:   467 QTEQY 471

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017116001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (502 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020593001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (276 aa)	•		•						0.600
	GSVIVG00024946001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (528 aa)	•		•						0.594
	GSVIVG00018534001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (973 aa)	•								0.544
	GSVIVG00004046001	SubName- Full=Chromosome undetermined scaffold_588, whole genome shotgun sequence; (302 aa)	•		•						0.531

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
COG1485	367	COG1485, COG1485, Predicted ATPase [General functi	6e-33
pfam03969	361	pfam03969, AFG1_ATPase, AFG1-like ATPase	2e-22

>gnl|CDD|224402 COG1485, COG1485, Predicted ATPase [General function prediction only]

 Score =  120 bits (303), Expect = 6e-33
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 30/183 (16%)

Query: 1   MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFE 60
           +  A      +   +   + + +  L          +E+  GR+++VP  A G  +F+F 
Sbjct: 212 LEQAPVYLTPLDAEAEAALDKLWAALSDGAPEAAANLEI-KGREIRVPAVAGGLLWFDFA 270

Query: 61  ELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAE 120
           +LC+ P  A+DY  L + FHT+ L  +P     +R  A RF+ LVD +Y+   +L+ +AE
Sbjct: 271 QLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELYDRGVKLVASAE 330

Query: 121 GSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEY 180
               +L+                                 L F   RT+SRL EM S+EY
Sbjct: 331 VPLNELY-----------------------------QGGRLAFEFQRTLSRLQEMQSEEY 361

Query: 181 LEQ 183
           L  
Sbjct: 362 LGI 364

Length = 367

>gnl|CDD|217821 pfam03969, AFG1_ATPase, AFG1-like ATPase

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 30/174 (17%)

Query: 9   YFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLG 68
           Y +   +   + + +  L    E  P     V  R  +         +F F +LC  P  
Sbjct: 216 YPLDGAAWAALDRLWDALTLG-EPQPLSTLEVAARLARARAAGGDLVWFSFADLCLAPRH 274

Query: 69  AADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN 128
            +DY  L + F T+ L  +P     ++  A RF+ LVD +Y+   +L+ +AE +      
Sbjct: 275 PSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIALVDELYDRHVKLVASAE-AALD--- 330

Query: 129 KIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLE 182
                                    DL     L F   RT+SRL EM S++YL 
Sbjct: 331 -------------------------DLYRGGRLAFEFQRTLSRLLEMQSEDYLA 359

This family of proteins contains a P-loop motif and are predicted to be ATPases. Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG2383	467	consensus Predicted ATPase [General function predi	100.0
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	100.0
COG1485	367	Predicted ATPase [General function prediction only	100.0
PRK08116	268	hypothetical protein; Validated	97.34
PRK06921	266	hypothetical protein; Provisional	96.17
PRK07952	244	DNA replication protein DnaC; Validated	95.55
PRK06835	329	DNA replication protein DnaC; Validated	95.54
PRK08181	269	transposase; Validated	95.25
PRK12377	248	putative replication protein; Provisional	95.2
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.79
PRK05642	234	DNA replication initiation factor; Validated	94.25
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	93.83
PRK08727	233	hypothetical protein; Validated	93.57
PRK06526	254	transposase; Provisional	93.14
PRK09183	259	transposase/IS protein; Provisional	92.75
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	92.31
COG1484	254	DnaC DNA replication protein [DNA replication, rec	91.37
PRK08939	306	primosomal protein DnaI; Reviewed	90.5
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	89.82
PRK14086	617	dnaA chromosomal replication initiation protein; P	89.11
PRK08084	235	DNA replication initiation factor; Provisional	89.0
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	86.49
PRK12422	445	chromosomal replication initiation protein; Provis	86.2
COG1485	367	Predicted ATPase [General function prediction only	85.85
PRK00149	450	dnaA chromosomal replication initiation protein; R	81.93
PRK09087	226	hypothetical protein; Validated	81.81

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=100.00  E-value=4.4e-49  Score=354.72  Aligned_cols=183  Identities=43%  Similarity=0.694  Sum_probs=158.4

Q ss_pred             CCCCcceeeCCc-chHHHHHHHHHHhhCCCCC-CCceeEEecCeeeEeccccCCEEEeeHHHHhCCCCChhhHHHHhhcc
Q 029356            2 TSAQQGFYFVGK-GSSEVMKQKFRDLIGEHEA-GPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIF   79 (194)
Q Consensus         2 ~~~~~~~y~~~~-~~~~~l~~~f~~l~~~~~~-~~~~i~vv~gR~i~v~~~~~~~a~f~F~eLC~~p~~a~DYl~La~~f   79 (194)
                      ++.++++|+.++ +.+..|+++|+.+.+++.. .+..+.+|+||++.||+++++||||+|++||++|+||+|||.||++|
T Consensus       275 ~~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~~~~~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~f  354 (467)
T KOG2383|consen  275 KSAGENYYFISETDVETVLKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNF  354 (467)
T ss_pred             CCCCceeEecChhhHHHHHHHHHHHHhccCCCCCCCcceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhc
Confidence            356678999998 7788999999988887643 34445557999999999999999999999999999999999999999


Q ss_pred             CeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhcccccchhhhhhccccccccc--cccccc---
Q 029356           80 HTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSM--RNDEAD---  154 (194)
Q Consensus        80 ~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~~~~~~~d~~~~~~~~~~~~~--~~~~~~---  154 (194)
                      |||+|+|||+|+.+++|++||||+|||++||++++|+++|++|+++||..... +++...++|+++...  .++..+   
T Consensus       355 hti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv~sa~~p~~~Lf~~~~~-~e~ls~s~r~~mddl~iks~~~~~~~  433 (467)
T KOG2383|consen  355 HTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEELFQFTGH-SEALSDSPRTLMDDLGIKSDSAGGSP  433 (467)
T ss_pred             ceeEeeccchhhhHHHHHHhhHhHHHHHHhhccceEEecCCCCHHHHhcccCc-ccccccCcccchhhhcccccCccccc
Confidence            99999999999999999999999999999999999999999999999985432 345555666665554  344445   


Q ss_pred             cccCcchhhhhhhhhhHHhhhCchHHHHHHH
Q 029356          155 LCVDNELGFAKDRTISRLTEMNSKEYLEQHA  185 (194)
Q Consensus       155 ~~~~~~~~Faf~Rt~SRL~EM~s~~Y~~~~~  185 (194)
                      +++|+||.|||+||+|||.|||+..||+++.
T Consensus       434 mf~g~EE~FAf~RtlSRL~eMqt~~y~~~~~  464 (467)
T KOG2383|consen  434 MFSGEEEGFAFDRTLSRLYEMQTELYWEQPY  464 (467)
T ss_pred             cccchHHHHHHHHHHHHHHHhhcchhccccc
Confidence            8999999999999999999999999998653

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=100.00  E-value=6.3e-45  Score=327.38  Aligned_cols=146  Identities=40%  Similarity=0.791  Sum_probs=135.8

Q ss_pred             eeeCCcchHHHHHHHHHHhhCCCCCCCceeEEecCeeeEeccccCCEEEeeHHHHhCCCCChhhHHHHhhccCeEEEcCC
Q 029356            8 FYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGI   87 (194)
Q Consensus         8 ~y~~~~~~~~~l~~~f~~l~~~~~~~~~~i~vv~gR~i~v~~~~~~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~~V   87 (194)
                      +||.+.++.+.++++|..++++....+..+. |.||+|.||.++++++||+|+|||++|+|++||++||++|++|+|+||
T Consensus       216 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-v~gR~i~v~~~~~~va~F~F~eLC~~plg~aDYlaLA~~F~ti~I~~V  294 (362)
T PF03969_consen  216 FYPLDEEADAALERLFQRLTGGEPEEPRTLE-VGGREIPVPRACGGVAWFDFDELCERPLGAADYLALAERFHTIFISDV  294 (362)
T ss_pred             cCcchHHHHHHHHHHHHHhccccCCCCceeE-EeeeEEeeecccCCEEEecHHHhhccCCCHHHHHHHHHhCCEEEEcCC
Confidence            5566777788999999999997766777777 589999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhcccccchhhhhhccccccccccccccccccCcchhhhhhh
Q 029356           88 PIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDR  167 (194)
Q Consensus        88 P~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Faf~R  167 (194)
                      |.|+..+.|+|||||+|||+|||++|+|+|+|++||++||.                             ++...|+|+|
T Consensus       295 P~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~-----------------------------~~~~~~~f~R  345 (362)
T PF03969_consen  295 PVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQ-----------------------------GGRLAFEFQR  345 (362)
T ss_pred             CCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHh-----------------------------CCCchhhhhH
Confidence            99999999999999999999999999999999999999997                             3455899999


Q ss_pred             hhhHHhhhCchHHHHH
Q 029356          168 TISRLTEMNSKEYLEQ  183 (194)
Q Consensus       168 t~SRL~EM~s~~Y~~~  183 (194)
                      |+|||.||||.+|+++
T Consensus       346 T~SRL~Em~~~~y~~~  361 (362)
T PF03969_consen  346 TASRLSEMQSEEYLAR  361 (362)
T ss_pred             HHHHHHHHhhHHHHhc
Confidence            9999999999999974

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1485 Predicted ATPase [General function prediction only]

Probab=100.00  E-value=3.6e-44  Score=319.00  Aligned_cols=148  Identities=32%  Similarity=0.561  Sum_probs=139.1

Q ss_pred             cceeeCCcchHHHHHHHHHHhhCCCCCCCceeEEecCeeeEeccccCCEEEeeHHHHhCCCCChhhHHHHhhccCeEEEc
Q 029356            6 QGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALE   85 (194)
Q Consensus         6 ~~~y~~~~~~~~~l~~~f~~l~~~~~~~~~~i~vv~gR~i~v~~~~~~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~   85 (194)
                      --+||++.++++.|+++|..+++++...+..|. ++||+|.++..+++++||+|.+||+.|+|+.|||+||++|++|+|+
T Consensus       217 ~y~~Pl~~~~~~~l~~~~~~ls~~~~~~~~~l~-i~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~  295 (367)
T COG1485         217 VYLTPLDAEAEAALDKLWAALSDGAPEAAANLE-IKGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLT  295 (367)
T ss_pred             eeecCCcHHHHHHHHHHHHHhccCCccCCchhh-ccCceeecccccCcchhccHHHHhhCcCCHHHHHHHHhhccEEEEc
Confidence            346778888899999999999997667777788 5999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhcccccchhhhhhccccccccccccccccccCcchhhhh
Q 029356           86 GIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAK  165 (194)
Q Consensus        86 ~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Faf  165 (194)
                      |||+|+..+.|+|||||+|||+|||+++||++||++||++||.                             |+...|+|
T Consensus       296 ~vp~m~~~~~~~arRFI~lVD~lYD~~vkL~~Sae~~~~~Ly~-----------------------------~~~~afeF  346 (367)
T COG1485         296 DVPQMDPLDRDEARRFIALVDELYDRGVKLVASAEVPLNELYQ-----------------------------GGRLAFEF  346 (367)
T ss_pred             CCCCCChhhhHHHHHHHHHHHHHHhcCCcEEEEccCCHHHhcc-----------------------------CchhhhHH
Confidence            9999999999999999999999999999999999999999998                             56779999


Q ss_pred             hhhhhHHhhhCchHHHHH
Q 029356          166 DRTISRLTEMNSKEYLEQ  183 (194)
Q Consensus       166 ~Rt~SRL~EM~s~~Y~~~  183 (194)
                      +||+|||.||||.+|+..
T Consensus       347 ~Rt~SRL~EMqS~~yl~~  364 (367)
T COG1485         347 QRTLSRLQEMQSEEYLGI  364 (367)
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            999999999999999973

>PRK08116 hypothetical protein; Validated

Probab=97.34  E-value=0.00094  Score=58.07  Aligned_cols=76  Identities=14%  Similarity=0.103  Sum_probs=57.6

Q ss_pred             CCEEEeeHHHHhCCC---------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCC
Q 029356           52 NGCAYFEFEELCDKP---------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGS  122 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p---------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~  122 (194)
                      ..+++.++.+|...-         .+..+++......+.++|+|+-.-.. .......+..+||..|+++.++++++..+
T Consensus       143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~-t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD-TEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            456788998887642         23346788788899999999943322 22344567889999999999999999999


Q ss_pred             hhhhhc
Q 029356          123 PFQLFN  128 (194)
Q Consensus       123 ~~~Lf~  128 (194)
                      |++|-.
T Consensus       222 ~~eL~~  227 (268)
T PRK08116        222 LEELKN  227 (268)
T ss_pred             HHHHHH
Confidence            998764

>PRK06921 hypothetical protein; Provisional

Probab=96.17  E-value=0.017  Score=50.14  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             CCEEEeeHHHHhCCCCCh----hhHHHHhhccCeEEEcCCCCC---CCCCch--HHHHHHHHHHHHHhcCceEEEEccCC
Q 029356           52 NGCAYFEFEELCDKPLGA----ADYFGLFKIFHTLALEGIPIF---GLHNRT--AAYRFVTLVDVMYENRARLLCTAEGS  122 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p~~a----~DYl~La~~f~ti~I~~VP~l---~~~~~d--~arRFI~LID~lYd~~v~L~~~a~~~  122 (194)
                      ..|+.+++.+|...-..+    .+.+.-....+.++|+|+ .+   +....+  ...-|-.+||.-|+++.++++++..+
T Consensus       147 ~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl-~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~  225 (266)
T PRK06921        147 VPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDL-FKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT  225 (266)
T ss_pred             ceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc-ccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            456788877775542111    234555667899999999 33   222222  33458899999999999999999999


Q ss_pred             hhhhhc
Q 029356          123 PFQLFN  128 (194)
Q Consensus       123 ~~~Lf~  128 (194)
                      |++|..
T Consensus       226 ~~el~~  231 (266)
T PRK06921        226 IDELLD  231 (266)
T ss_pred             HHHHhh
Confidence            999875

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.55  E-value=0.1  Score=44.97  Aligned_cols=76  Identities=7%  Similarity=0.048  Sum_probs=58.1

Q ss_pred             CCEEEeeHHHHhCC--------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCCh
Q 029356           52 NGCAYFEFEELCDK--------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSP  123 (194)
Q Consensus        52 ~~~a~f~F~eLC~~--------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~  123 (194)
                      ..++.++..+|...        ..+..+.+.-...++.++|+|+.... ....+..-|-.+||.=|+++.+.++++..++
T Consensus       128 ~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~  206 (244)
T PRK07952        128 KSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNM  206 (244)
T ss_pred             CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence            45677888888742        22344666667789999999998875 2333445667799999999999999999999


Q ss_pred             hhhhc
Q 029356          124 FQLFN  128 (194)
Q Consensus       124 ~~Lf~  128 (194)
                      ++|-.
T Consensus       207 ~~l~~  211 (244)
T PRK07952        207 EEMTK  211 (244)
T ss_pred             HHHHH
Confidence            99875

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.54  E-value=0.04  Score=49.51  Aligned_cols=76  Identities=11%  Similarity=0.132  Sum_probs=56.7

Q ss_pred             CCEEEeeHHHHhCCCCC--------hhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCCh
Q 029356           52 NGCAYFEFEELCDKPLG--------AADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSP  123 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p~~--------a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~  123 (194)
                      ..|..++..+|...-..        ..+.+.....++.++|+|+-... .+.....-|-.+|+..|+++.++++++..+|
T Consensus       212 ~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~-~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~  290 (329)
T PRK06835        212 KSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK-ITEFSKSELFNLINKRLLRQKKMIISTNLSL  290 (329)
T ss_pred             CeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence            46788888888764211        11225667789999999996553 2334456788999999999999999999999


Q ss_pred             hhhhc
Q 029356          124 FQLFN  128 (194)
Q Consensus       124 ~~Lf~  128 (194)
                      ++|-.
T Consensus       291 ~el~~  295 (329)
T PRK06835        291 EELLK  295 (329)
T ss_pred             HHHHH
Confidence            99764

>PRK08181 transposase; Validated

Probab=95.25  E-value=0.1  Score=45.71  Aligned_cols=74  Identities=16%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CEEEeeHHHHhCCC------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           53 GCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        53 ~~a~f~F~eLC~~p------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      .|.+++..+|+..-      ......+.-..+++.++|+|+-.... +...+.-+..+|+..|++ .++++++..|+.++
T Consensus       136 ~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~-~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w  213 (269)
T PRK08181        136 RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK-DQAETSVLFELISARYER-RSILITANQPFGEW  213 (269)
T ss_pred             ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC-CHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHH
Confidence            47788888888742      23345666677899999999977654 345667899999999997 59999999999998


Q ss_pred             hc
Q 029356          127 FN  128 (194)
Q Consensus       127 f~  128 (194)
                      ..
T Consensus       214 ~~  215 (269)
T PRK08181        214 NR  215 (269)
T ss_pred             HH
Confidence            85

>PRK12377 putative replication protein; Provisional

Probab=95.20  E-value=0.14  Score=44.30  Aligned_cols=76  Identities=7%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             CCEEEeeHHHHhCCC-------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChh
Q 029356           52 NGCAYFEFEELCDKP-------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPF  124 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p-------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~  124 (194)
                      -.|..++..+|...-       ....+++.-....+.++|+||-... .+.....-|-.+||.-|+++.++++++..+++
T Consensus       130 ~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~-~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~  208 (248)
T PRK12377        130 RSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR-ETKNEQVVLNQIIDRRTASMRSVGMLTNLNHE  208 (248)
T ss_pred             CCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH
Confidence            346788888887731       1234678778999999999995443 23457778999999999999999999999998


Q ss_pred             hhhc
Q 029356          125 QLFN  128 (194)
Q Consensus       125 ~Lf~  128 (194)
                      +|-.
T Consensus       209 ~l~~  212 (248)
T PRK12377        209 AMST  212 (248)
T ss_pred             HHHH
Confidence            8764

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.79  E-value=0.089  Score=44.24  Aligned_cols=75  Identities=15%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             CCEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356           52 NGCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  125 (194)
Q Consensus        52 ~~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~  125 (194)
                      ..|.+++-.+++..      .-...+|+.--+.++.++|+||-.+.. ......-|..++|.+++++.++++++..+|.+
T Consensus        65 ~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~-~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~  143 (219)
T PF00308_consen   65 KRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG-KQRTQEELFHLFNRLIESGKQLILTSDRPPSE  143 (219)
T ss_dssp             S-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT-HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred             ccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC-chHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence            45788876666543      244567888888999999999998873 23456889999999999999999999999998


Q ss_pred             hh
Q 029356          126 LF  127 (194)
Q Consensus       126 Lf  127 (194)
                      |-
T Consensus       144 l~  145 (219)
T PF00308_consen  144 LS  145 (219)
T ss_dssp             TT
T ss_pred             cc
Confidence            74

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK05642 DNA replication initiation factor; Validated

Probab=94.25  E-value=0.19  Score=42.51  Aligned_cols=73  Identities=18%  Similarity=0.301  Sum_probs=57.9

Q ss_pred             CCEEEeeHHHHhCCCCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhc
Q 029356           52 NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN  128 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~  128 (194)
                      ..+++++..++...   ..+++.-.+.++.++|+||-.+.... ....-|-++++.+|+++..+++++..+|.++-.
T Consensus        74 ~~v~y~~~~~~~~~---~~~~~~~~~~~d~LiiDDi~~~~~~~-~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~  146 (234)
T PRK05642         74 EPAVYLPLAELLDR---GPELLDNLEQYELVCLDDLDVIAGKA-DWEEALFHLFNRLRDSGRRLLLAASKSPRELPI  146 (234)
T ss_pred             CcEEEeeHHHHHhh---hHHHHHhhhhCCEEEEechhhhcCCh-HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence            56889999998753   34666667778999999998775432 334569999999999999999999999987653

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=93.83  E-value=0.19  Score=41.05  Aligned_cols=75  Identities=19%  Similarity=0.208  Sum_probs=56.7

Q ss_pred             CCEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356           52 NGCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  125 (194)
Q Consensus        52 ~~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~  125 (194)
                      ..+.++++.+|+..      .-...+++.-..+.+.++|+|+-.... +...+.-|-.+||.-|+++ +.++++..++++
T Consensus        76 ~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~-~tIiTSN~~~~~  153 (178)
T PF01695_consen   76 YSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERK-PTIITSNLSPSE  153 (178)
T ss_dssp             --EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT--EEEEEESS-HHH
T ss_pred             cceeEeecCceeccccccccccchhhhcCccccccEecccccceeee-cccccccchhhhhHhhccc-CeEeeCCCchhh
Confidence            45789999999874      233456788888999999999976543 4567778899999999975 899999999999


Q ss_pred             hhc
Q 029356          126 LFN  128 (194)
Q Consensus       126 Lf~  128 (194)
                      |..
T Consensus       154 l~~  156 (178)
T PF01695_consen  154 LEE  156 (178)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            886

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08727 hypothetical protein; Validated

Probab=93.57  E-value=0.21  Score=42.20  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             CEEEeeHHHHhCCCCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhc
Q 029356           53 GCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN  128 (194)
Q Consensus        53 ~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~  128 (194)
                      .+.+++..+++...   .+.+.-..+.+.++|+|+-.+...... ..-+..+++.+|+++..|++++..+|.++-.
T Consensus        71 ~~~y~~~~~~~~~~---~~~~~~l~~~dlLiIDDi~~l~~~~~~-~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~  142 (233)
T PRK08727         71 SSAYLPLQAAAGRL---RDALEALEGRSLVALDGLESIAGQRED-EVALFDFHNRARAAGITLLYTARQMPDGLAL  142 (233)
T ss_pred             cEEEEeHHHhhhhH---HHHHHHHhcCCEEEEeCcccccCChHH-HHHHHHHHHHHHHcCCeEEEECCCChhhhhh
Confidence            56788888876542   244444567889999999877754433 3455689999999999999999999998853

>PRK06526 transposase; Provisional

Probab=93.14  E-value=0.21  Score=43.15  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             CEEEeeHHHHhCCCC------ChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           53 GCAYFEFEELCDKPL------GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        53 ~~a~f~F~eLC~~p~------~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      .|.+++..+|+..-.      ...+.+.-..+++.++|+++..+.. +...+.-|-.+||.-|+++ .+++++..|+.++
T Consensus       128 ~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~-~~~~~~~L~~li~~r~~~~-s~IitSn~~~~~w  205 (254)
T PRK06526        128 RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPF-EPEAANLFFQLVSSRYERA-SLIVTSNKPFGRW  205 (254)
T ss_pred             chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCC-CHHHHHHHHHHHHHHHhcC-CEEEEcCCCHHHH
Confidence            455667777765321      1234444456789999999987753 3455567999999999986 6999999999988


Q ss_pred             hc
Q 029356          127 FN  128 (194)
Q Consensus       127 f~  128 (194)
                      ..
T Consensus       206 ~~  207 (254)
T PRK06526        206 GE  207 (254)
T ss_pred             HH
Confidence            75

>PRK09183 transposase/IS protein; Provisional

Probab=92.75  E-value=0.45  Score=41.07  Aligned_cols=74  Identities=12%  Similarity=0.018  Sum_probs=51.5

Q ss_pred             CEEEeeHHHHhCCC------CChhhHH-HHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356           53 GCAYFEFEELCDKP------LGAADYF-GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  125 (194)
Q Consensus        53 ~~a~f~F~eLC~~p------~~a~DYl-~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~  125 (194)
                      .+..++..+|...-      .+....+ ......+.++|+++-... .+...+.-|..+||..|+++ .+++++..|+.+
T Consensus       132 ~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~-~~~~~~~~lf~li~~r~~~~-s~iiTsn~~~~~  209 (259)
T PRK09183        132 KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLP-FSQEEANLFFQVIAKRYEKG-SMILTSNLPFGQ  209 (259)
T ss_pred             eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCC-CChHHHHHHHHHHHHHHhcC-cEEEecCCCHHH
Confidence            45666777776321      1122222 224567899999996544 33466778999999999987 589999999999


Q ss_pred             hhc
Q 029356          126 LFN  128 (194)
Q Consensus       126 Lf~  128 (194)
                      +..
T Consensus       210 w~~  212 (259)
T PRK09183        210 WDQ  212 (259)
T ss_pred             HHH
Confidence            875

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=92.31  E-value=0.43  Score=43.50  Aligned_cols=54  Identities=17%  Similarity=0.263  Sum_probs=45.1

Q ss_pred             HHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhccc
Q 029356           74 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKI  130 (194)
Q Consensus        74 ~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~~~  130 (194)
                      .|++..+.++++.+-.-   +...|.-.-.|...|+++||.|+++|..||++||.+.
T Consensus       123 ~l~~~~~lLcfDEF~V~---DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~g  176 (362)
T PF03969_consen  123 ELAKESRLLCFDEFQVT---DIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNG  176 (362)
T ss_pred             HHHhcCCEEEEeeeecc---chhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCc
Confidence            67888889999876643   4445777778889999999999999999999999853

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=91.37  E-value=0.29  Score=42.31  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             cCCEEEeeHHHHhCCCCChhh-------HHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCCh
Q 029356           51 ANGCAYFEFEELCDKPLGAAD-------YFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSP  123 (194)
Q Consensus        51 ~~~~a~f~F~eLC~~p~~a~D-------Yl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~  123 (194)
                      .-.|..++..||-..-..+-+       .+..-.+++.++|+|+=..... ...+-=|..+|+..|+++.. ++++..|+
T Consensus       133 g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~-~~~~~~~~q~I~~r~~~~~~-~~tsN~~~  210 (254)
T COG1484         133 GISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFS-QEEADLLFQLISRRYESRSL-IITSNLSF  210 (254)
T ss_pred             CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCC-HHHHHHHHHHHHHHHhhccc-eeecCCCh
Confidence            456788888888876444333       3556789999999998765532 23445566699999999988 99999998


Q ss_pred             hhhhcccccchhhhhhccccccccccccccccccCcchhhhhhhhhhHHhhhCchHHHHHHHHHH
Q 029356          124 FQLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSKEYLEQHAAML  188 (194)
Q Consensus       124 ~~Lf~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Faf~Rt~SRL~EM~s~~Y~~~~~~~~  188 (194)
                      +++-..-                           +.. . --+|.++||.+|...-++.....++
T Consensus       211 ~~~~~~~---------------------------~~~-~-~~e~~~dRi~~~~~~~~~~g~s~rl  246 (254)
T COG1484         211 GEWDELF---------------------------GDD-A-LTEALLDRILHHSHVIVIKGESYRL  246 (254)
T ss_pred             HHHHhhc---------------------------cCc-h-hHHHHHHHHHhcceeeEecchHhhh
Confidence            8866410                           100 0 1369999999999877755444433

>PRK08939 primosomal protein DnaI; Reviewed

Probab=90.50  E-value=1.1  Score=39.91  Aligned_cols=102  Identities=10%  Similarity=0.079  Sum_probs=67.6

Q ss_pred             CEEEeeHHHHhCCC------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHH-HHH-HHHHHHHhcCceEEEEccCChh
Q 029356           53 GCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAY-RFV-TLVDVMYENRARLLCTAEGSPF  124 (194)
Q Consensus        53 ~~a~f~F~eLC~~p------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~ar-RFI-~LID~lYd~~v~L~~~a~~~~~  124 (194)
                      .+..+++.+|...-      -+..+.+.-..+.+.++|+|+=.-.  ..+..+ -++ .+||.-|..+.+.++++..+++
T Consensus       186 ~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~--~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~  263 (306)
T PRK08939        186 SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ--MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFD  263 (306)
T ss_pred             CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc--ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence            46677777665431      2345778888999999999995433  333444 243 4568889899999999999999


Q ss_pred             hhhcccccchhhhhhccccccccccccccccccCcchhhhhhhhhhHHhhhCch
Q 029356          125 QLFNKIVTISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISRLTEMNSK  178 (194)
Q Consensus       125 ~Lf~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Faf~Rt~SRL~EM~s~  178 (194)
                      +|..--.              ..        ..|+.+.-.-+|.++||.++...
T Consensus       264 el~~~~~--------------~~--------~~g~~e~~~a~ri~dRI~~~~~~  295 (306)
T PRK08939        264 ELEHHLA--------------YT--------QRGEDETWKAARIMERIRYLAKE  295 (306)
T ss_pred             HHHHHHh--------------hh--------ccCcchhhHHHHHHHHHHHhcEE
Confidence            9875210              00        00221233457999999988643

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=89.82  E-value=1.4  Score=35.98  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=53.3

Q ss_pred             CCEEEeeHHHHhCCCCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           52 NGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      ..+.+++..+++..+   .+.+...+...+++|++|..++.. .+....+..++|.+++.+..+++++..++.++
T Consensus        67 ~~~~~i~~~~~~~~~---~~~~~~~~~~~lLvIDdi~~l~~~-~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~  137 (226)
T TIGR03420        67 KSAIYLPLAELAQAD---PEVLEGLEQADLVCLDDVEAIAGQ-PEWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             CcEEEEeHHHHHHhH---HHHHhhcccCCEEEEeChhhhcCC-hHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence            356788888887654   355555567789999999988643 23356777889999999889999998777554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=89.11  E-value=1.1  Score=43.81  Aligned_cols=74  Identities=12%  Similarity=0.237  Sum_probs=56.0

Q ss_pred             CEEEeeHHHHhCCC------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           53 GCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        53 ~~a~f~F~eLC~~p------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      .+.+++..+++..-      -....|.+--+.++.++|+||-.+.... ....-|.++|+.+|+++..+++++..+|.+|
T Consensus       346 ~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke-~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL  424 (617)
T PRK14086        346 RVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE-STQEEFFHTFNTLHNANKQIVLSSDRPPKQL  424 (617)
T ss_pred             eEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH-HHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence            56788888877431      1223455556678999999999886433 2346688999999999999999999999887


Q ss_pred             h
Q 029356          127 F  127 (194)
Q Consensus       127 f  127 (194)
                      =
T Consensus       425 ~  425 (617)
T PRK14086        425 V  425 (617)
T ss_pred             h
Confidence            3

>PRK08084 DNA replication initiation factor; Provisional

Probab=89.00  E-value=1.6  Score=36.81  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             CEEEeeHHHHhCCCCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-ceEEEEccCChhhhh
Q 029356           53 GCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENR-ARLLCTAEGSPFQLF  127 (194)
Q Consensus        53 ~~a~f~F~eLC~~p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~-v~L~~~a~~~~~~Lf  127 (194)
                      .+...++++...   ...+.+.--++++.++|+||-.+... .....-|-++++.+|+.+ +++++++..||.++-
T Consensus        75 ~v~y~~~~~~~~---~~~~~~~~~~~~dlliiDdi~~~~~~-~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~  146 (235)
T PRK08084         75 AVGYVPLDKRAW---FVPEVLEGMEQLSLVCIDNIECIAGD-ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLN  146 (235)
T ss_pred             eEEEEEHHHHhh---hhHHHHHHhhhCCEEEEeChhhhcCC-HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence            366778877543   23455555567789999999888643 334456889999999987 589999999998864

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=86.49  E-value=1.8  Score=39.29  Aligned_cols=75  Identities=13%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356           52 NGCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  125 (194)
Q Consensus        52 ~~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~  125 (194)
                      ..+.+++..++...      .-...+|....+..+.++|+||-.+.... ....-|..+++.+|+.+..+++++..+|.+
T Consensus       167 ~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~-~~~~~l~~~~n~~~~~~~~iiits~~~p~~  245 (405)
T TIGR00362       167 AKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE-RTQEEFFHTFNALHENGKQIVLTSDRPPKE  245 (405)
T ss_pred             CcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCH-HHHHHHHHHHHHHHHCCCCEEEecCCCHHH
Confidence            34677887776542      12344566666778999999999886322 234569999999999999999999999988


Q ss_pred             hh
Q 029356          126 LF  127 (194)
Q Consensus       126 Lf  127 (194)
                      |-
T Consensus       246 l~  247 (405)
T TIGR00362       246 LP  247 (405)
T ss_pred             Hh
Confidence            74

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=86.20  E-value=2.9  Score=39.09  Aligned_cols=76  Identities=12%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             CCEEEeeHHHHhCCC------CChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356           52 NGCAYFEFEELCDKP------LGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  125 (194)
Q Consensus        52 ~~~a~f~F~eLC~~p------~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~  125 (194)
                      ..+..++..++...-      -....+...-+..+.++|+||-.+.... ....-|..+++.+|+.+..+++++..+|.+
T Consensus       170 ~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~-~~qeelf~l~N~l~~~~k~IIlts~~~p~~  248 (445)
T PRK12422        170 GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKG-ATQEEFFHTFNSLHTEGKLIVISSTCAPQD  248 (445)
T ss_pred             CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCCh-hhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence            456777777665321      1223566666788999999998876322 245678899999999999999999999998


Q ss_pred             hhc
Q 029356          126 LFN  128 (194)
Q Consensus       126 Lf~  128 (194)
                      |..
T Consensus       249 l~~  251 (445)
T PRK12422        249 LKA  251 (445)
T ss_pred             Hhh
Confidence            864

>COG1485 Predicted ATPase [General function prediction only]

Probab=85.85  E-value=2.3  Score=39.00  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=45.6

Q ss_pred             HHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhccc
Q 029356           72 YFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFNKI  130 (194)
Q Consensus        72 Yl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~~~  130 (194)
                      =.+|++++++++++..-   ..+-..|.-.-.|..+|..+||.|++++..+|++||.+.
T Consensus       124 A~~~~~~~~vLCfDEF~---VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dG  179 (367)
T COG1485         124 ADELAAETRVLCFDEFE---VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDG  179 (367)
T ss_pred             HHHHHhcCCEEEeeeee---ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccc
Confidence            45688888888887544   334556777778999999999999999999999999864

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=81.93  E-value=3  Score=38.59  Aligned_cols=74  Identities=12%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             CEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           53 GCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        53 ~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      .+.+++..++...      .....++..--+.++.++|+||-.+... .....-|..++|.+|+.+..+++++..+|.+|
T Consensus       180 ~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l  258 (450)
T PRK00149        180 KVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK-ERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL  258 (450)
T ss_pred             eEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC-HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence            3667777766542      1233456666667899999999988632 22456899999999999999999999999886


Q ss_pred             h
Q 029356          127 F  127 (194)
Q Consensus       127 f  127 (194)
                      -
T Consensus       259 ~  259 (450)
T PRK00149        259 P  259 (450)
T ss_pred             H
Confidence            4

>PRK09087 hypothetical protein; Validated

Probab=81.81  E-value=3.5  Score=34.83  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=36.6

Q ss_pred             CeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhhhc
Q 029356           80 HTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN  128 (194)
Q Consensus        80 ~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~Lf~  128 (194)
                      ..++|+||..+...  .  .-|-++++.+|+++..+++++..+|.++-.
T Consensus        89 ~~l~iDDi~~~~~~--~--~~lf~l~n~~~~~g~~ilits~~~p~~~~~  133 (226)
T PRK09087         89 GPVLIEDIDAGGFD--E--TGLFHLINSVRQAGTSLLMTSRLWPSSWNV  133 (226)
T ss_pred             CeEEEECCCCCCCC--H--HHHHHHHHHHHhCCCeEEEECCCChHHhcc
Confidence            68999999877422  1  339999999999999999999998887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.75
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	93.8
2qgz_A	308	Helicase loader, putative primosome component; str	90.58

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.88  E-value=0.034  Score=43.34  Aligned_cols=77  Identities=12%  Similarity=0.027  Sum_probs=50.6

Q ss_pred             CCEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhh
Q 029356           52 NGCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQ  125 (194)
Q Consensus        52 ~~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~  125 (194)
                      ..+.+++..++...      .-+..+.+.......+++|++|-...........-|-.+++..|..+.++++++..+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~  162 (202)
T 2w58_A           83 VSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQ  162 (202)
T ss_dssp             CCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHH
T ss_pred             CeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHH
Confidence            35667777665431      112345566667788999999955443322222234458899999999999999999999


Q ss_pred             hhc
Q 029356          126 LFN  128 (194)
Q Consensus       126 Lf~  128 (194)
                      +..
T Consensus       163 l~~  165 (202)
T 2w58_A          163 LAH  165 (202)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.75  E-value=0.092  Score=40.22  Aligned_cols=74  Identities=11%  Similarity=0.009  Sum_probs=51.9

Q ss_pred             CEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           53 GCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        53 ~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      .+..++..++-..      .....+.+....+.+.++|+++-... .+......|..+|+..|+.+..+++++..+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~-~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~  147 (180)
T 3ec2_A           69 RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSER-LSDWQRELISYIITYRYNNLKSTIITTNYSLQRE  147 (180)
T ss_dssp             CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSC-CCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC-
T ss_pred             eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCc-CCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHh
Confidence            4566777766532      01122667777889999999965332 2344456777899999999999999999999986


Q ss_pred             h
Q 029356          127 F  127 (194)
Q Consensus       127 f  127 (194)
                      .
T Consensus       148 ~  148 (180)
T 3ec2_A          148 E  148 (180)
T ss_dssp             -
T ss_pred             h
Confidence            5

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.80  E-value=0.12  Score=39.36  Aligned_cols=51  Identities=18%  Similarity=0.176  Sum_probs=40.6

Q ss_pred             HHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCce-EEEEccCChhhhh
Q 029356           74 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRAR-LLCTAEGSPFQLF  127 (194)
Q Consensus        74 ~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~-L~~~a~~~~~~Lf  127 (194)
                      ++..+.+.++|+++-.++   ......+..+|+.+|+.+.. +++++..+|.++.
T Consensus        79 ~~~~~~~lLilDE~~~~~---~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~  130 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEKLG---NEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLV  130 (149)
T ss_dssp             GGGGGCSEEEEESTTCCC---SHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSS
T ss_pred             HHHhCCCEEEEeCccccC---hHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcc
Confidence            446788999999986654   23377799999999999887 8999988887765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.58  E-value=0.16  Score=43.21  Aligned_cols=74  Identities=11%  Similarity=0.052  Sum_probs=46.8

Q ss_pred             CEEEeeHHHHhCC---CC---ChhhHHHHhhccCeEEEcCCCCCCCCCchHHHH-HH-HHHHHHHhcCceEEEEccCChh
Q 029356           53 GCAYFEFEELCDK---PL---GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYR-FV-TLVDVMYENRARLLCTAEGSPF  124 (194)
Q Consensus        53 ~~a~f~F~eLC~~---p~---~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arR-FI-~LID~lYd~~v~L~~~a~~~~~  124 (194)
                      .+..+++.+|...   ..   ...+.+.......+++|++|-.....  +..+. +. .+|+..|..+..+++++..+|+
T Consensus       183 ~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~--~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~  260 (308)
T 2qgz_A          183 STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQAT--SWVRDEVLQVILQYRMLEELPTFFTSNYSFA  260 (308)
T ss_dssp             CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--------CTTTTHHHHHHHHHHHTCCEEEEESSCHH
T ss_pred             cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHHHHHHHCCCcEEEECCCCHH
Confidence            4556666555431   11   12234555667899999999443322  22233 44 4889999899999999999999


Q ss_pred             hhhc
Q 029356          125 QLFN  128 (194)
Q Consensus       125 ~Lf~  128 (194)
                      +|..
T Consensus       261 ~l~~  264 (308)
T 2qgz_A          261 DLER  264 (308)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.31

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.31  E-value=0.041  Score=42.71  Aligned_cols=73  Identities=11%  Similarity=0.296  Sum_probs=56.2

Q ss_pred             CEEEeeHHHHhCC------CCChhhHHHHhhccCeEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCceEEEEccCChhhh
Q 029356           53 GCAYFEFEELCDK------PLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL  126 (194)
Q Consensus        53 ~~a~f~F~eLC~~------p~~a~DYl~La~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~~v~L~~~a~~~~~~L  126 (194)
                      .+..++-.++...      .-...++...-+..+.++|+||..+.. +.....-|.++|+.+++.+.++++++..+|.++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~-~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l  144 (213)
T d1l8qa2          66 RVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG-KERTQIEFFHIFNTLYLLEKQIILASDRHPQKL  144 (213)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT-CHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred             ceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcC-chHHHHHHHHHHHHHhhccceEEEecCCcchhc
Confidence            4555555444332      123557777888999999999998863 355566688999999999999999999999987