Citrus Sinensis ID: 029361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSKSAAKGSKKKR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcHHcccccccEEEEEEEEEEEcccccEEEEEEEcccccccccEEEEccEEEEEEEEcccccEEEEEEEEEccEEEEEEccEEEEEEccccccEEEEEEccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEHHHHccccccccEEEEEEEEEEcccccEEEEEEEcccccHHHcEEEcccccEEEEEccccccEEEEEEEEEcccEEEEcccEEEEEEccccccHEEEccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccc
Coil and Loop (DISEMBL)
MASPISKSLISVLIALFLISssfassdvpfIVAHKKASLKRLKSGAERISVSIDIhnqgtstaydvsltddswpqdkfdviSGNISQSWerldaggilshsfeldakvkgmfhgspalitfriptKAALQeaystpmlpldvlaekpteNKLELAKRLLAKYGSQISVISIIVLFVYLItspsksaakgskkkr
Flexible Loop (DISEMBL)
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVsidihnqgtstaYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLItspsksaakgskkkr
Low Complexity Region (SEG)
MASPISKslisvlialflisssfassDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITspsksaakgskkkR
Disordered region (IsUnstruct)
********LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT**************
Disordered Region (DISOPRED)
*****SK*LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKA******STPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLI***************
Disordered Region (DISEMBL)
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSP************
Disordered Region (DISPRO)
*ASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITS*************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSKSAAKGSKKKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
P23438	183	Translocon-associated pro	yes	no	0.561	0.595	0.309	5e-09
P43308	183	Translocon-associated pro	yes	no	0.546	0.579	0.290	5e-08
Q5E9E4	183	Translocon-associated pro	yes	no	0.443	0.469	0.313	9e-08
Q9CPW5	183	Translocon-associated pro	yes	no	0.443	0.469	0.325	1e-07
Q54VI6	184	Translocon-associated pro	yes	no	0.546	0.576	0.229	0.0005

>sp|P23438|SSRB_CANFA Translocon-associated protein subunit beta OS=Canis familiaris GN=SSR2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 9   LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSL 68
           L SVL+ALF +S +   + +       K+ L R       +++  +I+N G+S A DV L
Sbjct: 4   LASVLLALFAVSHAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59

Query: 69  TDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
           +DDS+P + F ++SG ++  W+R+     +SH+  L     G F+ + A +T+
Sbjct: 60  SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.
Canis familiaris (taxid: 9615)

>sp|P43308|SSRB_HUMAN Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 12  VLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDD 71
           V++ALF ++ +   + +       K+ L R       +++  +I+N G+S A DV L+DD
Sbjct: 7   VVLALFAVTQAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 62

Query: 72  SWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
           S+P + F ++SG ++  W+R+     +SH+  L     G F+ + A IT+
Sbjct: 63  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Homo sapiens (taxid: 9606)

>sp|Q5E9E4|SSRB_BOVIN Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 36  KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
           K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GILSHSFELDAKVKGMFHGSPALITF 121
             +SH+  L     G F+ + A +T+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Bos taurus (taxid: 9913)

>sp|Q9CPW5|SSRB_MOUSE Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 36  KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
           K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GILSHSFELDAKVKGMFHGSPALITF 121
             +SH+  L     G F+ + A IT+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Mus musculus (taxid: 10090)

>sp|Q54VI6|SSRB_DICDI Translocon-associated protein subunit beta OS=Dictyostelium discoideum GN=ssr2 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 7   KSLISVLIALFLISSSFASSDVPFIVAHKKASL---KRLKSG---AERISVSIDIHNQGT 60
           K++IS+ + LF          V F+     A L   K++  G    + + +   I+N G+
Sbjct: 4   KTVISLFLVLF----------VSFVYCENGAELLFHKKIVEGPVVGKELPIQFIIYNVGS 53

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
             AYD+S  D+ +   +F+ +SG+    WE L     +  +  +  K  G++  +  ++ 
Sbjct: 54  EPAYDISFIDNDFSNAEFEFVSGSSEGKWETLAPNSQVQTNLTVIPKKSGIYSLTSTVLN 113

Query: 121 FR 122
           +R
Sbjct: 114 YR 115

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
225451561	191	PREDICTED: translocon-associated protein	0.979	0.994	0.759	2e-80
255543619	208	translocon-associated protein, beta subu	0.927	0.865	0.803	2e-78
359488447	189	PREDICTED: translocon-associated protein	0.969	0.994	0.748	7e-78
118484599	196	unknown [Populus trichocarpa]	0.865	0.857	0.792	1e-73
297807427	195	translocon-associated protein beta famil	1.0	0.994	0.664	2e-73
351725945	194	uncharacterized protein LOC100500066 pre	0.922	0.922	0.748	6e-72
18417271	195	translocon-associated protein subunit be	1.0	0.994	0.644	6e-72
388500708	198	unknown [Lotus japonicus]	0.938	0.919	0.722	1e-71
224055805	196	predicted protein [Populus trichocarpa]	0.865	0.857	0.779	3e-71
224129228	183	predicted protein [Populus trichocarpa]	0.855	0.907	0.781	4e-71

>gi|225451561|ref|XP_002274525.1| PREDICTED: translocon-associated protein subunit beta isoform 1 [Vitis vinifera]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 173/191 (90%), Gaps = 1/191 (0%)

Query: 5   ISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY 64
           ++K+LISV++AL L+SS+  SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQG++TAY
Sbjct: 1   MAKTLISVVVALILVSSTLGSSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSTTAY 60

Query: 65  DVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIP 124
           DVSLTDDSW QD F+++SGN S SWERLDAGG+LSH+FEL++KV+GMF+G+PA+ITFRIP
Sbjct: 61  DVSLTDDSWSQDVFNIVSGNTSTSWERLDAGGLLSHAFELESKVEGMFYGAPAVITFRIP 120

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSK 184
           T AALQEAYSTP+LPLD+LA +P E K E AKRLLAKYGSQISVISI+ +FVYL+ SPSK
Sbjct: 121 TTAALQEAYSTPILPLDILAVRPPEKKFEWAKRLLAKYGSQISVISIVSVFVYLVASPSK 180

Query: 185 S-AAKGSKKKR 194
           S A KGSKKKR
Sbjct: 181 SGAGKGSKKKR 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543619|ref|XP_002512872.1| translocon-associated protein, beta subunit precursor, putative [Ricinus communis] gi|223547883|gb|EEF49375.1| translocon-associated protein, beta subunit precursor, putative [Ricinus communis]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/183 (80%), Positives = 166/183 (90%), Gaps = 3/183 (1%)

Query: 12  VLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDD 71
           +L+ALFLISS+ ASSDVPFIVAHKKA+L RLKSGAER+SVSIDI+NQG+STAYDVSL DD
Sbjct: 9   LLVALFLISSTSASSDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGSSTAYDVSLLDD 68

Query: 72  SWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQE 131
            WPQD FDVISGN SQSWERLD GGILSH+FEL+ KVKG+F+GSPA++TFRIPTKAALQE
Sbjct: 69  HWPQDIFDVISGNTSQSWERLDVGGILSHTFELEGKVKGLFYGSPAVVTFRIPTKAALQE 128

Query: 132 AYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSK-SAAKGS 190
           A+STP+LPLDVLAE+P E K E   RLLAKYGS ISVISI+VLFVYL+ SPSK SAAKGS
Sbjct: 129 AFSTPILPLDVLAERPPEKKFEW--RLLAKYGSLISVISIVVLFVYLVASPSKSSAAKGS 186

Query: 191 KKK 193
           KK+
Sbjct: 187 KKR 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488447|ref|XP_002274610.2| PREDICTED: translocon-associated protein subunit beta isoform 2 [Vitis vinifera]

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 171/191 (89%), Gaps = 3/191 (1%)

Query: 5   ISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY 64
           ++K+LISV++AL L+SS+  SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQG++TAY
Sbjct: 1   MAKTLISVVVALILVSSTLGSSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSTTAY 60

Query: 65  DVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIP 124
           DVSLTDDSW QD F+++SGN S SWERLDAGG+LSH+FEL++KV+GMF+G+PA+ITFRIP
Sbjct: 61  DVSLTDDSWSQDVFNIVSGNTSTSWERLDAGGLLSHAFELESKVEGMFYGAPAVITFRIP 120

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSK 184
           T AALQEAYSTP+LPLD+LA +P E K E   RLLAKYGSQISVISI+ +FVYL+ SPSK
Sbjct: 121 TTAALQEAYSTPILPLDILAVRPPEKKFEW--RLLAKYGSQISVISIVSVFVYLVASPSK 178

Query: 185 S-AAKGSKKKR 194
           S A KGSKKKR
Sbjct: 179 SGAGKGSKKKR 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484599|gb|ABK94173.1| unknown [Populus trichocarpa]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 156/169 (92%), Gaps = 1/169 (0%)

Query: 27  DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNIS 86
           DVPFIVAHKKA+ + LKSGAER+SVSIDI+NQG+STAYD++LTDD WP+D FDV+SGN S
Sbjct: 28  DVPFIVAHKKATPRGLKSGAERVSVSIDIYNQGSSTAYDITLTDDHWPKDIFDVVSGNTS 87

Query: 87  QSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEK 146
           QSW+RLDAGG+LSH+FEL+ KVKGMFHGSPA+ITFRIPTKAALQEAYSTP+LPLDVLAEK
Sbjct: 88  QSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTKAALQEAYSTPILPLDVLAEK 147

Query: 147 PTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSKS-AAKGSKKKR 194
           P   KLELAK+LLAKYGS ISVISI+VLF+YL+ +PSKS AAK +KK+R
Sbjct: 148 PPVQKLELAKKLLAKYGSLISVISIVVLFIYLLVTPSKSGAAKANKKRR 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807427|ref|XP_002871597.1| translocon-associated protein beta family protein [Arabidopsis lyrata subsp. lyrata] gi|297317434|gb|EFH47856.1| translocon-associated protein beta family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 167/194 (86%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA  +SK LIS +    L+S+SFA+S+VPF+V HKKA+L RLKSGAER+SVS DI+NQG+
Sbjct: 1   MAIALSKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           STAYDV+LTD+SW +  F+V++GN S+SWERLDAGGILSHSFEL+AKVKG+F+G+PA++T
Sbjct: 61  STAYDVTLTDNSWDKATFEVVNGNTSKSWERLDAGGILSHSFELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT 180
           FRIPTK ALQEAYSTP+LPLD+LA+KP    L++AKRLLAKYGS +SVIS++VLF+YL+ 
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKILDVAKRLLAKYGSLVSVISMVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 194
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725945|ref|NP_001236342.1| uncharacterized protein LOC100500066 precursor [Glycine max] gi|255628939|gb|ACU14814.1| unknown [Glycine max]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 156/179 (87%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA PI+K+LI+  +   L+  S ASSDVPFIVAHKKASL RLKSGAER+SV+IDI NQGT
Sbjct: 1   MADPIAKALIAFALLTSLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGT 60

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           STAYDVSL+DDSWP D FDVISG+ S+SWERLDAGGILSH+FEL+AK KG+F G PA+I 
Sbjct: 61  STAYDVSLSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIK 120

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLI 179
           FR+PTK+ALQEAYSTP+LPLDVL+++P E K E AKRLLAKYGS ISVISI+VLFVYL+
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLSDRPPEKKFEWAKRLLAKYGSLISVISIMVLFVYLV 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417271|ref|NP_568293.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|186522719|ref|NP_001119221.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|186522723|ref|NP_001119222.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|186522727|ref|NP_001119223.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|14517446|gb|AAK62613.1| AT5g14030/MUA22_2 [Arabidopsis thaliana] gi|21553748|gb|AAM62841.1| unknown [Arabidopsis thaliana] gi|22136544|gb|AAM91058.1| AT5g14030/MUA22_2 [Arabidopsis thaliana] gi|332004593|gb|AED91976.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|332004594|gb|AED91977.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|332004595|gb|AED91978.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|332004596|gb|AED91979.1| translocon-associated protein subunit beta [Arabidopsis thaliana]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 165/194 (85%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA  ++K LIS +    L+S+SFA+S+VPF+V HKKA+L RLKSGAER+SVS DI+NQG+
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           S+AYDV+LTD+SW +  F+V++GN S+SWERLDAGGILSHS EL+AKVKG+F+G+PA++T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT 180
           FRIPTK ALQEAYSTP+LPLD+LA+KP    L++AKRLLAKYGS +SVIS++V F+YL+ 
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 194
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500708|gb|AFK38420.1| unknown [Lotus japonicus]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 160/184 (86%), Gaps = 2/184 (1%)

Query: 1   MASPISKSLI--SVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQ 58
           MA PISK+LI  S++ +L L S + +SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQ
Sbjct: 3   MADPISKALILLSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQ 62

Query: 59  GTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL 118
           G+STAYD+SL DD+WP D F +ISG+ S+SWERLDAGGILSH+FEL+AK KG+F G PA+
Sbjct: 63  GSSTAYDISLADDTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAV 122

Query: 119 ITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYL 178
           I FRIPTK+ALQEA+STP+LPLD+LA++P E KLE AKRLLAKYGS  SVISI+VLFVYL
Sbjct: 123 IKFRIPTKSALQEAFSTPILPLDILADRPPEKKLEWAKRLLAKYGSLFSVISIMVLFVYL 182

Query: 179 ITSP 182
           + +P
Sbjct: 183 VATP 186

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055805|ref|XP_002298662.1| predicted protein [Populus trichocarpa] gi|222845920|gb|EEE83467.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 148/168 (88%)

Query: 27  DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNIS 86
           DVPFIVAHKKA+L  LKSGAER+SVSIDI+NQG+STAYD++L DD WPQD F+V+SGN S
Sbjct: 28  DVPFIVAHKKATLSSLKSGAERVSVSIDIYNQGSSTAYDITLVDDHWPQDMFNVVSGNTS 87

Query: 87  QSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEK 146
           QSWERL AGG+LSHSFELD KVKG+F GSPA+ITFRIPTKAALQEAYSTP+LPLDVLA+K
Sbjct: 88  QSWERLHAGGLLSHSFELDGKVKGLFLGSPAVITFRIPTKAALQEAYSTPILPLDVLADK 147

Query: 147 PTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSKSAAKGSKKKR 194
           P   KLE AK+LL KYGS ISVISI+VLFVYL+ +PSKS A  S KKR
Sbjct: 148 PPVQKLEWAKKLLVKYGSLISVISIVVLFVYLLVTPSKSGAAKSGKKR 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129228|ref|XP_002328922.1| predicted protein [Populus trichocarpa] gi|222839352|gb|EEE77689.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 154/169 (91%), Gaps = 3/169 (1%)

Query: 27  DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNIS 86
           DVPFIVAHKKA+ + LKSGAER+SVSIDI+NQG+STAYD++LTDD WP+D FDV+SGN S
Sbjct: 17  DVPFIVAHKKATPRGLKSGAERVSVSIDIYNQGSSTAYDITLTDDHWPKDIFDVVSGNTS 76

Query: 87  QSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEK 146
           QSW+RLDAGG+LSH+FEL+ KVKGMFHGSPA+ITFRIPTKAALQEAYSTP+LPLDVLAEK
Sbjct: 77  QSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTKAALQEAYSTPILPLDVLAEK 136

Query: 147 PTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSKS-AAKGSKKKR 194
           P   KLEL  +LLAKYGS ISVISI+VLF+YL+ +PSKS AAK +KK+R
Sbjct: 137 PPVQKLEL--KLLAKYGSLISVISIVVLFIYLLVTPSKSGAAKANKKRR 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2174678	195	AT5G14030 "AT5G14030" [Arabido	0.922	0.917	0.620	6.6e-58
UNIPROTKB|Q5ZLW9	183	SSR2 "Uncharacterized protein"	0.443	0.469	0.325	1.8e-09
UNIPROTKB|E9PJ35	133	SSR2 "Translocon-associated pr	0.443	0.646	0.325	2.2e-09
UNIPROTKB|E9PQI4	147	SSR2 "Translocon-associated pr	0.443	0.585	0.325	2.2e-09
UNIPROTKB|P43308	183	SSR2 "Translocon-associated pr	0.443	0.469	0.325	2.2e-09
UNIPROTKB|F1RLP7	203	SSR2 "Uncharacterized protein"	0.443	0.423	0.325	2.2e-09
MGI|MGI:1913506	183	Ssr2 "signal sequence receptor	0.443	0.469	0.325	2.2e-09
RGD|1308365	183	Ssr2 "signal sequence receptor	0.443	0.469	0.325	2.2e-09
UNIPROTKB|F1MW25	212	SSR2 "Translocon-associated pr	0.443	0.405	0.313	2.9e-09
UNIPROTKB|Q5E9E4	183	SSR2 "Translocon-associated pr	0.443	0.469	0.313	2.9e-09

TAIR|locus:2174678 AT5G14030 "AT5G14030" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 111/179 (62%), Positives = 143/179 (79%)

Query:     1 MASPISKXXXXXXXXXXXXXXXXXXXDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
             MA  ++K                   +VPF+V HKKA+L RLKSGAER+SVS DI+NQG+
Sbjct:     1 MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query:    61 STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
             S+AYDV+LTD+SW +  F+V++GN S+SWERLDAGGILSHS EL+AKVKG+F+G+PA++T
Sbjct:    61 SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query:   121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLI 179
             FRIPTK ALQEAYSTP+LPLD+LA+KP    L++AKRLLAKYGS +SVIS++V F+YL+
Sbjct:   121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLV 179

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q5ZLW9 SSR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R     + +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGKDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PJ35 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PQI4 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P43308 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RLP7 SSR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    47 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 106

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:   107 SNVSHTVVLRPLKAGYFNFTSATITY 132

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

MGI|MGI:1913506 Ssr2 "signal sequence receptor, beta" [Mus musculus (taxid:10090)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1308365 Ssr2 "signal sequence receptor, beta" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MW25 SSR2 "Translocon-associated protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A +T+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATVTY 112

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q5E9E4 SSR2 "Translocon-associated protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A +T+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATVTY 112

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_601416.1 annotation not avaliable (195 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam05753	181	pfam05753, TRAP_beta, Translocon-associated protei	8e-56

>gnl|CDD|218732 pfam05753, TRAP_beta, Translocon-associated protein beta (TRAPB)

 Score =  174 bits (442), Expect = 8e-56
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 4/184 (2%)

Query: 10  ISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLT 69
           +++++   L S+S A  D P  +   K+ L R       ++V+  I+N G+S AYDVSL 
Sbjct: 1   LALVVLALLASASLAQEDSPARLLVSKSILNRYLVEGRDLTVTYTIYNVGSSPAYDVSLV 60

Query: 70  DDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPT-KAA 128
           D+S+P+D F+V+SG++S SWERL  G  +SH+F +  K  G F+ +PA +T+R     A 
Sbjct: 61  DNSFPEDAFEVVSGSLSASWERLAPGENVSHTFVVRPKKSGYFNFTPAEVTYRASEDGAE 120

Query: 129 LQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITSPSKSAAK 188
           LQ AYS+P     +LAE+  + K       L  + +   +    V    L+   SKS  +
Sbjct: 121 LQVAYSSPPGEGGILAERDYDKKFSPH---LLDWVAFAVMTLPSVGIPLLLWWVSKSKYE 177

Query: 189 GSKK 192
             KK
Sbjct: 178 KLKK 181

This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	100.0
KOG3317	188	consensus Translocon-associated complex TRAP, beta	100.0
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	97.84
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	97.53
PF01345	76	DUF11: Domain of unknown function DUF11; InterPro:	97.42
TIGR01451	53	B_ant_repeat conserved repeat domain. This model r	97.2
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	96.42
PF13584	484	BatD: Oxygen tolerance	95.49
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	95.41
COG1361	500	S-layer domain [Cell envelope biogenesis, outer me	93.71
COG1721	416	Uncharacterized conserved protein (some members co	93.15
PF07919	554	Gryzun: Gryzun, putative trafficking through Golgi	93.12
COG1470	513	Predicted membrane protein [Function unknown]	92.54
PF03896	285	TRAP_alpha: Translocon-associated protein (TRAP),	92.43
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	91.92
PF12584	147	TRAPPC10: Trafficking protein particle complex sub	89.35
PF14874	102	PapD-like: Flagellar-associated PapD-like	89.08
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	88.41
TIGR03079	399	CH4_NH3mon_ox_B methane monooxygenase/ammonia mono	85.68
PF13584	484	BatD: Oxygen tolerance	85.64
COG1361	500	S-layer domain [Cell envelope biogenesis, outer me	84.63
PF04744	381	Monooxygenase_B: Monooxygenase subunit B protein;	83.6
PF03345	423	DDOST_48kD: Oligosaccharyltransferase 48 kDa subun	80.85
PF09478	80	CBM49: Carbohydrate binding domain CBM49; InterPro	80.39

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=100.00  E-value=3.9e-55  Score=364.55  Aligned_cols=176  Identities=36%  Similarity=0.512  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHhhhcccCCCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEE
Q 029361           10 ISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW   89 (194)
Q Consensus        10 ~~~lla~~~v~~~~~~~~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~   89 (194)
                      +++++++++++.+++.+++|+|+++|+++++++++| +|++|+|+|||+|+++|+||+|+||+||+|+|++++|+++++|
T Consensus         2 ~~~~~~~l~~~~~~~~~~~a~llv~K~il~~~~v~g-~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~   80 (181)
T PF05753_consen    2 ALFLLALLALASVAQEDSPARLLVSKQILNKYLVEG-EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASW   80 (181)
T ss_pred             hhhhHHHHHHHHhccCCCCcEEEEEEeeccccccCC-cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEE
Confidence            455666666666788899999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             EEecCCCceEEEEEEEecceeeEeeecEEEEEEcCCC-cceeeEeecCCCcceeeecCchhhhhHHHHHHHhhhchhhhh
Q 029361           90 ERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTK-AALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISV  168 (194)
Q Consensus        90 erI~pg~nvsH~vvv~Pk~~G~fn~t~A~VtY~~se~-~~~q~a~Ss~pg~~~I~~~~~ydrkfewa~~l~~~y~~~~~v  168 (194)
                      ||||||+|++|+|+|+|++.|+||+++|+|+|+.+++ .++|+++||+||+++|+++|+|||+|      ..|+.+|..+
T Consensus        81 ~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f------~~~~~~w~~f  154 (181)
T PF05753_consen   81 ERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEGAKELQVAYSSPPGEGDILAERDYDKKF------SSHVMDWGAF  154 (181)
T ss_pred             EEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCCCceeEEEEecCCCcceEEeccccchhh------hhhHHHHHhH
Confidence            9999999999999999999999999999999999999 77999999999999999999999999      4456777665


Q ss_pred             HH---HheeeeEEEeCcCccccccccc
Q 029361          169 IS---IIVLFVYLITSPSKSAAKGSKK  192 (194)
Q Consensus       169 ~s---~~~~~v~~~~~~~~s~~~~~~~  192 (194)
                      .+   .++++.|++..+|||+....||
T Consensus       155 ~~~~~~~~~~p~ll~~~sKsky~~~k~  181 (181)
T PF05753_consen  155 AIMTLPVLLIPYLLWYSSKSKYEKSKK  181 (181)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccccCC
Confidence            44   4558999999999999433354

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-53  Score=353.18  Aligned_cols=169  Identities=38%  Similarity=0.643  Sum_probs=152.7

Q ss_pred             hcccCCCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEE
Q 029361           22 SFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHS  101 (194)
Q Consensus        22 ~~~~~~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~  101 (194)
                      ++++...++||.+|+.+|+|.|++ +|++++|+|||+|+++|+||+|+|+|||++.||||+|+++++|||||||+|++|+
T Consensus        18 a~~at~~a~ll~kk~~lnry~v~~-rd~~leY~IyNvGsspAldVtLsD~Sfpt~~FeIvkG~~~~swerIpags~vsHs   96 (188)
T KOG3317|consen   18 ASFATSEAMLLAKKATLNRYAVEA-RDVSLEYDIYNVGSSPALDVTLSDNSFPTKTFEIVKGNLSVSWERIPAGSNVSHS   96 (188)
T ss_pred             hhhcccceEEEeeccchhhccccc-eeeEEEEeeEEcCCCcceeEEecCCCCCccceeeeccccccceeecCCCCceEEE
Confidence            355566699999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecceeeEeeecEEEEEEcCCCcceeeEeecCCCcceeeecCchhhhhHHHHHHHhhhchhhhhHHHheeeeEEEeC
Q 029361          102 FELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLITS  181 (194)
Q Consensus       102 vvv~Pk~~G~fn~t~A~VtY~~se~~~~q~a~Ss~pg~~~I~~~~~ydrkfewa~~l~~~y~~~~~v~s~~~~~v~~~~~  181 (194)
                      +||||++.|.||+++|+|||+.+|+..+|++++|+||+|+|+++|||||+|  ..|+...||..++++..+++++||+++
T Consensus        97 ivl~prv~g~f~~t~atVty~~~e~g~~~~~~ts~~~~gyila~re~~rr~--~~~~l~flgfgviv~p~t~ip~lL~~~  174 (188)
T KOG3317|consen   97 IVLRPRVKGVFNGTPATVTYRIPEKGALQEAYTSPPGPGYILAQREPDRRF--DPRLLAFLGFGVIVIPMTVIPILLVAT  174 (188)
T ss_pred             EEEeecccceeccCceEEEEEcCCCCceeEEeecCCCCcceeeecCccccc--ChhHHHHHhhhhhhhhhhheeeeEEEe
Confidence            999999999999999999999999988899999999999999999999999  225566666666777778899999998


Q ss_pred             cCccc-c-cccccCC
Q 029361          182 PSKSA-A-KGSKKKR  194 (194)
Q Consensus       182 ~~~s~-~-~~~~~~~  194 (194)
                      | |++ . +.+||||
T Consensus       175 s-Krrysn~~kkkk~  188 (188)
T KOG3317|consen  175 S-KRRYSNASKKKKR  188 (188)
T ss_pred             c-ccccccccccccC
Confidence            7 777 4 5555554

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=97.84  E-value=0.00022  Score=51.17  Aligned_cols=78  Identities=19%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             ceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCce--eeEEEEecCCCceEEEEEEEe
Q 029361           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFELDA  106 (194)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~--s~~~erI~pg~nvsH~vvv~P  106 (194)
                      |-|.+.-......+..| ++++|+++|.|.|..+|.++.+.        | ..+|..  +.....|+||+..+..+.+.+
T Consensus         2 pDL~v~~~~~~~~~~~g-~~~~i~~~V~N~G~~~~~~~~v~--------~-~~~~~~~~~~~i~~L~~g~~~~v~~~~~~   71 (101)
T PF07705_consen    2 PDLTVSITVSPSNVVPG-EPVTITVTVKNNGTADAENVTVR--------L-YLDGNSVSTVTIPSLAPGESETVTFTWTP   71 (101)
T ss_dssp             --EEE-EEEC-SEEETT-SEEEEEEEEEE-SSS-BEEEEEE--------E-EETTEEEEEEEESEB-TTEEEEEEEEEE-
T ss_pred             CCEEEEEeeCCCcccCC-CEEEEEEEEEECCCCCCCCEEEE--------E-EECCceeccEEECCcCCCcEEEEEEEEEe
Confidence            34555555566777888 99999999999999998888776        3 233433  445679999999999999999


Q ss_pred             cceeeEeeec
Q 029361          107 KVKGMFHGSP  116 (194)
Q Consensus       107 k~~G~fn~t~  116 (194)
                      ...|.|.+..
T Consensus        72 ~~~G~~~i~~   81 (101)
T PF07705_consen   72 PSPGSYTIRV   81 (101)
T ss_dssp             SS-CEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999988653

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=97.53  E-value=0.00058  Score=48.82  Aligned_cols=68  Identities=22%  Similarity=0.378  Sum_probs=44.2

Q ss_pred             ccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecc---eeeEeeec
Q 029361           44 SGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKV---KGMFHGSP  116 (194)
Q Consensus        44 ~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~---~G~fn~t~  116 (194)
                      .| +.++++.++-|.|+.++.++++.=+.  |+.|+ +. .-..+...|+||++++.++.|+|-.   .|.|+++.
T Consensus         3 ~G-~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~~-~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~   73 (78)
T PF10633_consen    3 PG-ETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-VS-ASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTV   73 (78)
T ss_dssp             TT-EEEEEEEEEE--SSS-BSS-EEEEE----TTSE-----EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred             CC-CEEEEEEEEEECCCCceeeEEEEEeC--CCCcc-cc-CCccccccCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence            46 99999999999999999999987432  56666 22 2234555999999999999999643   58888763

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes

Probab=97.42  E-value=0.00075  Score=47.83  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=48.4

Q ss_pred             CCCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCc
Q 029361           26 SDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGN   84 (194)
Q Consensus        26 ~~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~   84 (194)
                      ...+.+.+.|......+..| +.+++++++-|.|+.+|.+|.|.|. + +..+++++|+
T Consensus        21 ~~~~~~~~~k~~~~~~~~~G-d~v~ytitvtN~G~~~a~nv~v~D~-l-p~g~~~v~~S   76 (76)
T PF01345_consen   21 VAIPDLSITKTVNPSTANPG-DTVTYTITVTNTGPAPATNVVVTDT-L-PAGLTFVSGS   76 (76)
T ss_pred             cCCCCEEEEEecCCCcccCC-CEEEEEEEEEECCCCeeEeEEEEEc-C-CCCCEEeCCC
Confidence            34466999999999999999 9999999999999999999999996 5 5567777774

Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA

>TIGR01451 B_ant_repeat conserved repeat domain

Probab=97.20  E-value=0.0013  Score=44.71  Aligned_cols=50  Identities=24%  Similarity=0.359  Sum_probs=40.6

Q ss_pred             eecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceee
Q 029361           35 KKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQ   87 (194)
Q Consensus        35 K~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~   87 (194)
                      |......+..| ..++.++++-|.|..+|.+|.|+|. .| +.++.++|+++.
T Consensus         1 Kt~d~~~~~~G-d~v~Yti~v~N~g~~~a~~v~v~D~-lP-~g~~~v~~S~~~   50 (53)
T TIGR01451         1 KTVDKTVATIG-DTITYTITVTNNGNVPATNVVVTDI-LP-SGTTFVSNSVTV   50 (53)
T ss_pred             CccCccccCCC-CEEEEEEEEEECCCCceEeEEEEEc-CC-CCCEEEeCcEEE
Confidence            44555667788 9999999999999999999999985 44 557788887653

This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=96.42  E-value=0.012  Score=44.00  Aligned_cols=48  Identities=15%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             EEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEeee
Q 029361           50 SVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        50 tV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t  115 (194)
                      .|+.++-|.|+.+ .++.+.|              +.. ...|+||++.+.+|  +|.+.|.|.|.
T Consensus        44 ~v~l~~~N~~~~~-h~~~i~~--------------~~~-~~~l~~g~~~~~~f--~~~~~G~y~~~   91 (104)
T PF13473_consen   44 PVTLTFTNNDSRP-HEFVIPD--------------LGI-SKVLPPGETATVTF--TPLKPGEYEFY   91 (104)
T ss_dssp             EEEEEEEE-SSS--EEEEEGG--------------GTE-EEEE-TT-EEEEEE--EE-S-EEEEEB
T ss_pred             eEEEEEEECCCCc-EEEEECC--------------Cce-EEEECCCCEEEEEE--cCCCCEEEEEE
Confidence            3445677998876 6666655              222 27899999986665  79999999875

>PF13584 BatD: Oxygen tolerance

Probab=95.49  E-value=0.093  Score=48.79  Aligned_cols=77  Identities=22%  Similarity=0.366  Sum_probs=53.7

Q ss_pred             cccccccccceeEEEEEEEEecCCcceeeeEEecCCCCC-CCeeeecCceeeEEEEecCC--CceEEEEEEEecceeeEe
Q 029361           37 ASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQ-DKFDVISGNISQSWERLDAG--GILSHSFELDAKVKGMFH  113 (194)
Q Consensus        37 i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~-e~Felv~G~~s~~~erI~pg--~nvsH~vvv~Pk~~G~fn  113 (194)
                      +..+.+..| +.+++++++.+-|+         +..+|+ ++|++.+.+.+.+..-+.-.  ...+..|++.|++.|.|.
T Consensus        19 vd~~~v~~g-e~~~l~i~~~~~~~---------~~~~p~l~~f~v~~~~~s~~~~~inG~~~~~~~~~~~l~p~~~G~~~   88 (484)
T PF13584_consen   19 VDRNEVGLG-ETFQLTITINGDGD---------DPDLPELDGFEVLGPSQSSSTSIINGKVSSSTTYTYTLQPKKTGTFT   88 (484)
T ss_pred             ECCcEEcCC-CEEEEEEEEecCcc---------cCCCCCCCCeEEcceEEEEEEEEecCceEEEEEEEEEEEecccceEE
Confidence            455677788 99999999976332         233444 88998444455555444322  236778899999999999


Q ss_pred             eecEEEEEEc
Q 029361          114 GSPALITFRI  123 (194)
Q Consensus       114 ~t~A~VtY~~  123 (194)
                      +.++.|++..
T Consensus        89 IP~~~v~v~G   98 (484)
T PF13584_consen   89 IPPFTVEVDG   98 (484)
T ss_pred             EceEEEEECC
Confidence            9999997643

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=95.41  E-value=0.41  Score=38.51  Aligned_cols=86  Identities=16%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhhhcccCCCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecC-----
Q 029361            9 LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISG-----   83 (194)
Q Consensus         9 ~~~~lla~~~v~~~~~~~~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G-----   83 (194)
                      ++.+++++++--..++.+..|.|.+...= ..+-+.  ...-|.++|-|-|+.+|-.|++.-.        +-.|     
T Consensus        14 ill~viglv~y~~l~~~~~pp~l~v~~~~-~~r~~~--gqyyVpF~V~N~gg~TAasV~V~ge--------L~~~~~v~E   82 (122)
T TIGR02588        14 ILAAMFGLVAYDWLRYSNKAAVLEVAPAE-VERMQT--GQYYVPFAIHNLGGTTAAAVNIRGE--------LRQAGAVVE   82 (122)
T ss_pred             HHHHHHHHHHHHhhccCCCCCeEEEeehh-eeEEeC--CEEEEEEEEEeCCCcEEEEEEEEEE--------EccCCceeE
Confidence            44444444444446788888988777622 233333  4799999999999999999998753        2222     


Q ss_pred             ceeeEEEEecCCCceEEEEEEE
Q 029361           84 NISQSWERLDAGGILSHSFELD  105 (194)
Q Consensus        84 ~~s~~~erI~pg~nvsH~vvv~  105 (194)
                      +-..++|=||-|+..+-.++-+
T Consensus        83 ~~e~tiDfl~g~e~~~G~~IF~  104 (122)
T TIGR02588        83 NAEVTIDYLASGSKENGTLIFR  104 (122)
T ss_pred             EeeEEEEEcCCCCeEeEEEEEc
Confidence            3466777777776655444443

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]

Probab=93.71  E-value=0.87  Score=42.71  Aligned_cols=85  Identities=22%  Similarity=0.289  Sum_probs=67.9

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCce-eeEEEEecCCCceEEEEEEEec---ceeeEee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI-SQSWERLDAGGILSHSFELDAK---VKGMFHG  114 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~-s~~~erI~pg~nvsH~vvv~Pk---~~G~fn~  114 (194)
                      ...+..| +..+++++|.|.|+.+|.++.|...+ |...+.-+.+.. ...++-|.||+++.-++.+...   ..|.|..
T Consensus       160 ~~~i~~G-~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i  237 (500)
T COG1361         160 PEAIIPG-ETNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAGSNAEPGTYTI  237 (500)
T ss_pred             ccccCCC-CccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEeecCCCCccEEE
Confidence            4455677 77799999999999999999999864 555566666666 6889999999999999999987   5777776


Q ss_pred             ecEEEEEEcCCC
Q 029361          115 SPALITFRIPTK  126 (194)
Q Consensus       115 t~A~VtY~~se~  126 (194)
                      . ..++|+..+.
T Consensus       238 ~-i~i~~~~~~~  248 (500)
T COG1361         238 N-LEITYKDEEG  248 (500)
T ss_pred             E-EEEEEecCCc
Confidence            4 6788888443

>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]

Probab=93.15  E-value=0.66  Score=42.88  Aligned_cols=92  Identities=20%  Similarity=0.298  Sum_probs=65.2

Q ss_pred             CCCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEE
Q 029361           26 SDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELD  105 (194)
Q Consensus        26 ~~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~  105 (194)
                      ...+.+-+.+.+....+.+| +++++++.+-|   .+.-.+.+.|+ +|++.+ .+.|.-. ..-.+.+|+.  ..+.+.
T Consensus        48 ~~~~~~~v~r~~~~~~~~~g-~~~~v~~~v~~---r~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~  118 (416)
T COG1721          48 RSLPGARVERSLEKRRLFAG-EEVEVTLRVRN---RGRPRLLLVDD-IPPSFL-GVEGTEE-VSLRLGPGER--VAYKVT  118 (416)
T ss_pred             hcccceEeeccccccccccC-ccceeEEEEEe---cCccceEeeec-cCCccc-ccccCcc-eeeccCCCce--EEEEEe
Confidence            44456777887765558888 99999999999   33444556653 666644 4444322 2234555555  999999


Q ss_pred             ecceeeEeeecEEEEEEcCCC
Q 029361          106 AKVKGMFHGSPALITFRIPTK  126 (194)
Q Consensus       106 Pk~~G~fn~t~A~VtY~~se~  126 (194)
                      |.+-|.|.+.+..+.....-+
T Consensus       119 ~~~rG~~~~~~v~~~~~~~~g  139 (416)
T COG1721         119 PLRRGEYRLPPVRVRAEDPFG  139 (416)
T ss_pred             cccCCcccccceEEEccCccc
Confidence            999999999999999887654

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function

Probab=93.12  E-value=0.93  Score=42.46  Aligned_cols=85  Identities=20%  Similarity=0.206  Sum_probs=65.2

Q ss_pred             CCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEe
Q 029361           27 DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDA  106 (194)
Q Consensus        27 ~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~P  106 (194)
                      ..++++++-   ..+...| ..++++|+|.|- +.-..+.++.=+  ++|+| +.+|.-+.++- |.|++.-+-.|.+.|
T Consensus       469 ~~~~v~~~~---p~~~~~~-~~~~l~~~I~N~-T~~~~~~~~~me--~s~~F-~fsG~k~~~~~-llP~s~~~~~y~l~p  539 (554)
T PF07919_consen  469 SPLRVLASV---PPSAIVG-EPFTLSYTIENP-TNHFQTFELSME--PSDDF-MFSGPKQTTFS-LLPFSRHTVRYNLLP  539 (554)
T ss_pred             CCcEEEEec---CCccccC-cEEEEEEEEECC-CCccEEEEEEEc--cCCCE-EEECCCcCceE-ECCCCcEEEEEEEEE
Confidence            344555554   6777888 999999999994 445555555432  45669 99999888887 999999999999999


Q ss_pred             cceeeEeeecEEEE
Q 029361          107 KVKGMFHGSPALIT  120 (194)
Q Consensus       107 k~~G~fn~t~A~Vt  120 (194)
                      ...|...+..=.|.
T Consensus       540 l~~G~~~lP~l~v~  553 (554)
T PF07919_consen  540 LVAGWWILPRLKVR  553 (554)
T ss_pred             ccCCcEECCcEEEe
Confidence            99999987765553

The region in question is approximately 150 residues long.

>COG1470 Predicted membrane protein [Function unknown]

Probab=92.54  E-value=0.59  Score=45.24  Aligned_cols=92  Identities=18%  Similarity=0.291  Sum_probs=62.6

Q ss_pred             ccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeee-ecCceeeEEEEecCCCceEEEEEEE-ec--ceeeEeeecE
Q 029361           42 LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDV-ISGNISQSWERLDAGGILSHSFELD-AK--VKGMFHGSPA  117 (194)
Q Consensus        42 ~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Fel-v~G~~s~~~erI~pg~nvsH~vvv~-Pk--~~G~fn~t~A  117 (194)
                      +-.| ++.++...|.|.|+.|=.||.|+=+ =|++ |++ |+++   +++.|+||++.+-.++++ |.  ..|-|..+-.
T Consensus       393 ~taG-ee~~i~i~I~NsGna~LtdIkl~v~-~Pqg-Wei~Vd~~---~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~  466 (513)
T COG1470         393 ITAG-EEKTIRISIENSGNAPLTDIKLTVN-GPQG-WEIEVDES---TIPSLEPGESKTVSLTITVPEDAGAGDYRITIT  466 (513)
T ss_pred             ecCC-ccceEEEEEEecCCCccceeeEEec-CCcc-ceEEECcc---cccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence            4567 9999999999999999999999865 3443 654 3332   899999999999999999 43  4566655444


Q ss_pred             EEEEEcCCCcce--eeEeecCCCc
Q 029361          118 LITFRIPTKAAL--QEAYSTPMLP  139 (194)
Q Consensus       118 ~VtY~~se~~~~--q~a~Ss~pg~  139 (194)
                      ..+=..+.++.+  .++-||.-+-
T Consensus       467 ~ksDq~s~e~tlrV~V~~sS~st~  490 (513)
T COG1470         467 AKSDQASSEDTLRVVVGQSSTSTY  490 (513)
T ss_pred             EeeccccccceEEEEEeccccchh
Confidence            433333333322  2444555443

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []

Probab=92.43  E-value=1.2  Score=40.29  Aligned_cols=93  Identities=14%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             EEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCC-CCCeeeecCce-eeEE-EEecCCCceEEEEEEEe-
Q 029361           31 IVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWP-QDKFDVISGNI-SQSW-ERLDAGGILSHSFELDA-  106 (194)
Q Consensus        31 LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp-~e~Felv~G~~-s~~~-erI~pg~nvsH~vvv~P-  106 (194)
                      ++.-|.  ...++.| +...+-+.+-|-|+ ..+.|...+-+|. +++|...==++ ...+ -.|+||+..|-.|...| 
T Consensus        86 ~~F~~~--~~~l~aG-~~~~~LvgftN~g~-~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~  161 (285)
T PF03896_consen   86 ILFPKP--TKKLPAG-EPVKFLVGFTNKGS-EPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPS  161 (285)
T ss_pred             EEeccc--cccccCC-CeEEEEEEEEeCCC-CCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecc
Confidence            444454  4667777 99999999999999 5899999998884 56665543333 2222 36899999999999997 


Q ss_pred             --cceeeEeeecEEEEEEcCCCcc
Q 029361          107 --KVKGMFHGSPALITFRIPTKAA  128 (194)
Q Consensus       107 --k~~G~fn~t~A~VtY~~se~~~  128 (194)
                        -..+.|.+.-. +.|+..++..
T Consensus       162 ~~l~pr~f~L~i~-l~y~d~~g~~  184 (285)
T PF03896_consen  162 EELAPRPFGLVIN-LIYEDSDGNQ  184 (285)
T ss_pred             hhcCCcceEEEEE-EEEEeCCCCE
Confidence              45677887774 5598887754

; GO: 0005783 endoplasmic reticulum

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=91.92  E-value=0.25  Score=36.92  Aligned_cols=70  Identities=17%  Similarity=0.122  Sum_probs=49.4

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeec--Cc------eeeEEEEecCCCceEEEEEEEeccee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVIS--GN------ISQSWERLDAGGILSHSFELDAKVKG  110 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~--G~------~s~~~erI~pg~nvsH~vvv~Pk~~G  110 (194)
                      .+.++.| +|+++..++.|-.+.+-.+|++.=-.+      .+.  |.      .....-.|+||+..++.+.+.|..+|
T Consensus         8 ~~~~~vG-~d~~v~v~~~N~~~~~l~~v~~~l~~~------~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG   80 (107)
T PF00927_consen    8 PGDPVVG-QDFTVSVSFTNPSSEPLRNVSLNLCAF------TVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYG   80 (107)
T ss_dssp             ESEEBTT-SEEEEEEEEEE-SSS-EECEEEEEEEE------EEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHE
T ss_pred             CCCccCC-CCEEEEEEEEeCCcCccccceeEEEEE------EEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeEe
Confidence            5677899 999999999999999878877653100      122  22      24456679999999999999999999


Q ss_pred             eEeee
Q 029361          111 MFHGS  115 (194)
Q Consensus       111 ~fn~t  115 (194)
                      .-..-
T Consensus        81 ~~~~l   85 (107)
T PF00927_consen   81 PKQLL   85 (107)
T ss_dssp             EECCE
T ss_pred             cchhc
Confidence            84443

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=89.35  E-value=4.2  Score=32.51  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             cccccceeEEEEEEEEecC------------CcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecc
Q 029361           41 RLKSGAERISVSIDIHNQG------------TSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKV  108 (194)
Q Consensus        41 ~~v~g~~ditV~ytIYNvG------------~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~  108 (194)
                      -..+| +-+.++..|-|..            ....+-.++.+|   ++.| +|+|--...+.- ..|+..+-.++|.|.+
T Consensus        26 ~~~vG-qpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~---~~~W-lV~Grrrg~f~~-~~~~~~~~~l~LIPL~   99 (147)
T PF12584_consen   26 PCRVG-QPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVAD---SDNW-LVSGRRRGVFSL-SDGSEHEIPLTLIPLR   99 (147)
T ss_pred             ceEeC-CeEEEEEEEEEcccCCccccccccCCCccEEEEEecC---CCcE-EEeccCcceEEe-cCCCeEEEEEEEEecc
Confidence            34688 9999999999972            122333444332   3445 899988777766 8888889999999999


Q ss_pred             eeeEeeecEEEEEEc
Q 029361          109 KGMFHGSPALITFRI  123 (194)
Q Consensus       109 ~G~fn~t~A~VtY~~  123 (194)
                      .|+..+...+|.=..
T Consensus       100 ~G~L~lP~V~i~~~~  114 (147)
T PF12584_consen  100 AGYLPLPKVEIRPYD  114 (147)
T ss_pred             cceecCCEEEEEecc
Confidence            999999999887665

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=89.08  E-value=7  Score=28.44  Aligned_cols=73  Identities=16%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             cccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEE-ecceeeEeee
Q 029361           37 ASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELD-AKVKGMFHGS  115 (194)
Q Consensus        37 i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~-Pk~~G~fn~t  115 (194)
                      +.=.....| +..+...+|-|.|..++ ...+..+.-..+.|.+--.     =..|+||+.++-.+++. +...|.|...
T Consensus        11 ldFG~v~~g-~~~~~~v~l~N~s~~p~-~f~v~~~~~~~~~~~v~~~-----~g~l~PG~~~~~~V~~~~~~~~g~~~~~   83 (102)
T PF14874_consen   11 LDFGNVFVG-QTYSRTVTLTNTSSIPA-RFRVRQPESLSSFFSVEPP-----SGFLAPGESVELEVTFSPTKPLGDYEGS   83 (102)
T ss_pred             EEeeEEccC-CEEEEEEEEEECCCCCE-EEEEEeCCcCCCCEEEECC-----CCEECCCCEEEEEEEEEeCCCCceEEEE
Confidence            333445577 99999999999999875 3333333323455655321     14599999999999999 6777988755


Q ss_pred             c
Q 029361          116 P  116 (194)
Q Consensus       116 ~  116 (194)
                      -
T Consensus        84 l   84 (102)
T PF14874_consen   84 L   84 (102)
T ss_pred             E
Confidence            4

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=88.41  E-value=2.6  Score=31.04  Aligned_cols=66  Identities=18%  Similarity=0.288  Sum_probs=36.2

Q ss_pred             EEEEEEEEecCCcc---------eeeeEEecCCCCCCCeeeecCce---eeEEEEecCCCceEEEEEEEecc--eeeEee
Q 029361           49 ISVSIDIHNQGTST---------AYDVSLTDDSWPQDKFDVISGNI---SQSWERLDAGGILSHSFELDAKV--KGMFHG  114 (194)
Q Consensus        49 itV~ytIYNvG~s~---------A~dV~L~D~sfp~e~Felv~G~~---s~~~erI~pg~nvsH~vvv~Pk~--~G~fn~  114 (194)
                      +.++++|-|.|+.+         -+|+.|.|. =..+.|.--.|.+   -..=..|+||+..++..++....  .|.|..
T Consensus         2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~-~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~   80 (82)
T PF12690_consen    2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK-EGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL   80 (82)
T ss_dssp             EEEEEEEEE-SSS-EEEEESSS--EEEEEE-T-T--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred             EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECC-CCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence            56788888887743         456666652 1222222223332   23557899999999999998777  798876


Q ss_pred             e
Q 029361          115 S  115 (194)
Q Consensus       115 t  115 (194)
                      .
T Consensus        81 ~   81 (82)
T PF12690_consen   81 E   81 (82)
T ss_dssp             E
T ss_pred             e
Confidence            4

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B

Probab=85.68  E-value=4  Score=38.60  Aligned_cols=73  Identities=16%  Similarity=0.324  Sum_probs=51.5

Q ss_pred             ceEEEEeecccccccccceeEEEEEEEEecCCccee-------eeEEe--------cCCCCCCCeeeecCceeeE-EEEe
Q 029361           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLT--------DDSWPQDKFDVISGNISQS-WERL   92 (194)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~-------dV~L~--------D~sfp~e~Felv~G~~s~~-~erI   92 (194)
                      +.-+.-|-..-+|-|.| +.+.++++|-|.|+.+-+       +|.+.        ++.||+|--.  .| ++.+ =+-|
T Consensus       265 ~~~V~~kv~~a~Y~VPG-R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla--~G-L~v~d~~pI  340 (399)
T TIGR03079       265 PNPVSINVTKANYDVPG-RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLA--EG-LEVDDQSAI  340 (399)
T ss_pred             CCceEEEEeccEEecCC-cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhh--cc-ceeCCCCCc
Confidence            34667787888999999 999999999999998754       33333        3455555322  23 3433 3359


Q ss_pred             cCCCceEEEEEEE
Q 029361           93 DAGGILSHSFELD  105 (194)
Q Consensus        93 ~pg~nvsH~vvv~  105 (194)
                      .||++.+-++...
T Consensus       341 ~PGETr~v~v~aq  353 (399)
T TIGR03079       341 APGETVEVKMEAK  353 (399)
T ss_pred             CCCcceEEEEEEe
Confidence            9999998887765

Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.

>PF13584 BatD: Oxygen tolerance

Probab=85.64  E-value=13  Score=34.68  Aligned_cols=114  Identities=14%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             CceEEEEeecccccccccceeEEEEEEEEecCCcceee-eEEecCCCCCCCeeeecCceeeEEEEe-cCCC---ceE-EE
Q 029361           28 VPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYD-VSLTDDSWPQDKFDVISGNISQSWERL-DAGG---ILS-HS  101 (194)
Q Consensus        28 ~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~d-V~L~D~sfp~e~Felv~G~~s~~~erI-~pg~---nvs-H~  101 (194)
                      ...+.+.=.+..+.+-+| +.+.++|.+|=...-...+ ..+..+.++  +|.+..=.-..++.+- --|.   .+. +.
T Consensus       125 ~~~~~l~~~v~~~~~Yvg-e~v~lt~~ly~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~i~G~~y~~~~~~~  201 (484)
T PF13584_consen  125 DDDVFLEAEVSKKSVYVG-EPVILTLRLYTRNNFRQLGIEELPPPDFE--GFWVEQLGDDRQYEEERINGRRYRVIELRR  201 (484)
T ss_pred             cccEEEEEEeCCCceecC-CcEEEEEEEEEecCchhccccccCCCCCC--CcEEEECCCCCceeEEEECCEEEEEEEEEE
Confidence            344677777778889999 9999999999877765333 233333333  3432222223344432 2222   233 56


Q ss_pred             EEEEecceeeEeeecEEEEEEcCCC------------cceeeEeecCCCcceeee
Q 029361          102 FELDAKVKGMFHGSPALITFRIPTK------------AALQEAYSTPMLPLDVLA  144 (194)
Q Consensus       102 vvv~Pk~~G~fn~t~A~VtY~~se~------------~~~q~a~Ss~pg~~~I~~  144 (194)
                      +.|.|.+.|.+...++.++......            ...+.-+++++....|.+
T Consensus       202 ~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~s~~~~i~V~p  256 (484)
T PF13584_consen  202 YALFPQKSGTLTIPPATFEVTVSDPSGRRDFFGGNFGRSRPVSISSEPLTITVKP  256 (484)
T ss_pred             EEEEeCCceeEEecCEEEEEEEecccCccCccccccccceeEEecCCCeEEEecc
Confidence            8999999999999999998876532            123466777777776654

>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]

Probab=84.63  E-value=3.1  Score=39.02  Aligned_cols=80  Identities=23%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             cccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCce-eeEEEEecC--CCceEEEEEEE---eccee
Q 029361           37 ASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI-SQSWERLDA--GGILSHSFELD---AKVKG  110 (194)
Q Consensus        37 i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~-s~~~erI~p--g~nvsH~vvv~---Pk~~G  110 (194)
                      .....+-.| .+..+..+++|.|...+.|+.+....-.+  |....+.. ......+..  |+-.++.+.+.   ..+.|
T Consensus        38 ~~p~~~~~~-~~~~l~v~~~n~~~~~~~~v~v~i~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~V~~~a~~g  114 (500)
T COG1361          38 YSPNVARPG-EDVDLTVTIENVGELLAEDVKVEITPEYP--FSLVSGETLLLSIGTLNFLGGEPATVKFKLTVDENAKSG  114 (500)
T ss_pred             ccCcccCcc-cceEEEEEeccccccccccEEEEEEeccc--ceeeEEEeecCCCceeeecCCCcceEEEEEEEcCCCCCC
Confidence            334445555 99999999999999988888877632222  88888875 333444444  55555555443   67788


Q ss_pred             eEeeecEEE
Q 029361          111 MFHGSPALI  119 (194)
Q Consensus       111 ~fn~t~A~V  119 (194)
                      .|++.-..-
T Consensus       115 ~y~i~v~~~  123 (500)
T COG1361         115 DYEIDVYVS  123 (500)
T ss_pred             cEEEeEEEE
Confidence            888887774

>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []

Probab=83.60  E-value=12  Score=35.46  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             EEEeecccccccccceeEEEEEEEEecCCccee-------eeEEecCCCCCC------CeeeecCceeeEEE-EecCCCc
Q 029361           32 VAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLTDDSWPQD------KFDVISGNISQSWE-RLDAGGI   97 (194)
Q Consensus        32 lvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~-------dV~L~D~sfp~e------~Felv~G~~s~~~e-rI~pg~n   97 (194)
                      +.-|-..-+|-|.| +.++++.+|-|.|+++..       +|.+.|+..+.+      +. +-.+-++++=+ -|+||++
T Consensus       249 V~~~v~~A~Y~vpg-R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l-~A~~gL~vs~~~pI~PGET  326 (381)
T PF04744_consen  249 VKVKVTDATYRVPG-RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDEL-LAERGLSVSDNSPIAPGET  326 (381)
T ss_dssp             EEEEEEEEEEESSS-SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTT-EETT-EEES--S-B-TT-E
T ss_pred             eEEEEeccEEecCC-cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhh-hccCcceeCCCCCcCCCce
Confidence            56666778899999 999999999999999875       477777555422      22 33323555544 7999999


Q ss_pred             eEEEEEEE
Q 029361           98 LSHSFELD  105 (194)
Q Consensus        98 vsH~vvv~  105 (194)
                      .+-++.+.
T Consensus       327 rtl~V~a~  334 (381)
T PF04744_consen  327 RTLTVEAQ  334 (381)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99988875

These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.

>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose

Probab=80.85  E-value=20  Score=34.14  Aligned_cols=79  Identities=22%  Similarity=0.326  Sum_probs=42.6

Q ss_pred             CCceEEEEEEE-ecceeeEeeecEEEEEEcCCCcceeeEeecCCCcceeeecCchhhhhHHHHHHHhhhchhhhhHHHhe
Q 029361           95 GGILSHSFELD-AKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIV  173 (194)
Q Consensus        95 g~nvsH~vvv~-Pk~~G~fn~t~A~VtY~~se~~~~q~a~Ss~pg~~~I~~~~~ydrkfewa~~l~~~y~~~~~v~s~~~  173 (194)
                      +.+-.++...+ |-..|.|+|   .|.|+-.-=.-+.....-+.++   ++-.+|+|.+    +|...|--..+++|+++
T Consensus       329 ~~~~~Y~~~FklPD~hGVF~F---~vdY~R~G~t~l~~~~~v~VRp---l~Hdey~Rs~----fI~~A~PYyas~~s~m~  398 (423)
T PF03345_consen  329 DDNGTYSTTFKLPDVHGVFTF---KVDYKRPGYTFLEEKTQVSVRP---LAHDEYPRSW----FITNAYPYYASAFSMMI  398 (423)
T ss_pred             CCCCEEEEEEECCCccceEEE---EEEEecCceeeEEEEEEEeccC---CccccCcccc----ccccccHHHHHHHHHHH
Confidence            34444555555 999999999   5888853211111122222222   2346788855    55555555555555444


Q ss_pred             -----eeeEEEeCcC
Q 029361          174 -----LFVYLITSPS  183 (194)
Q Consensus       174 -----~~v~~~~~~~  183 (194)
                           .++||.-.|.
T Consensus       399 gf~lF~~~fL~~~~~  413 (423)
T PF03345_consen  399 GFFLFVFVFLYHKPV  413 (423)
T ss_pred             HHHhheeeEEEecCc
Confidence                 3445555554

These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane

>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=80.39  E-value=8.6  Score=27.71  Aligned_cols=65  Identities=9%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             cccccccee-EEEEEEEEecCCcceeeeEEecCCCCCCCeeeec---Cceee-EEE-EecCCCceEEEEEE
Q 029361           40 KRLKSGAER-ISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVIS---GNISQ-SWE-RLDAGGILSHSFEL  104 (194)
Q Consensus        40 ~~~v~g~~d-itV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~---G~~s~-~~e-rI~pg~nvsH~vvv  104 (194)
                      +.-.+|+.. .-+..+|.|.|..+-.++.|.=+.+..+-+++..   |.... +|- .|+||++.+--|+.
T Consensus         9 ~sW~~~g~~y~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FGYI~   79 (80)
T PF09478_consen    9 NSWTENGQTYTQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFGYIS   79 (80)
T ss_pred             eEEEeCCEEEEEEEEEEEECCCCeEEEEEEEECccchhheeEEeccCCEEECCccccccCCCCEEEEEEEe
Confidence            333444333 3467889999999999999988777777777766   22333 564 89999988766653

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
3idu_A	127	Uncharacterized protein; all beta-protein, structu	97.72
2l0d_A	114	Cell surface protein; structural genomics, northea	96.67
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	94.63
3hrz_B	252	Cobra venom factor; serine protease, glycosilated,	94.24
2x3c_A	343	Toxic extracellular endopeptidase; hydrolase; 1.99	93.65
2kut_A	122	Uncharacterized protein; structural genomics, PSI-	93.45
1vjj_A	692	Protein-glutamine glutamyltransferase E; transglut	90.24
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	88.1
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	87.73
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	86.78
1ex0_A	731	Coagulation factor XIII A chain; transglutaminase,	86.02
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	85.28
2q3z_A	687	Transglutaminase 2; transglutaminase 2, tissue tra	84.88
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	84.85
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	82.79
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	82.43
1g0d_A	695	Protein-glutamine gamma-glutamyltransferase; tissu	81.43
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	80.98

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=97.72  E-value=0.00039  Score=54.18  Aligned_cols=86  Identities=10%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             hcccCCCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCce-eeEEEEecCCCceEE
Q 029361           22 SFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI-SQSWERLDAGGILSH  100 (194)
Q Consensus        22 ~~~~~~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~-s~~~erI~pg~nvsH  100 (194)
                      .++....|-|.++. .....+..| +.++++.++-|.|+.+|.+.++.-         .+.|.. ....-.|+||++.+-
T Consensus        10 ~~~~~~~pDL~V~i-s~P~~v~~G-~~~ti~vtV~N~G~~~a~~~~V~l---------yvng~~v~t~~v~La~G~s~tv   78 (127)
T 3idu_A           10 LATTFEFPDLTVEI-KGPDVVGVN-KLAEYEVHVKNLGGIGVPSTKVRV---------YINGTLYKNWTVSLGPKEEKVL   78 (127)
T ss_dssp             C--CCSSCCEEEEE-ESCSEECTT-CCEEEEEEEEECSSSCEEEEEEEE---------EETTEEEEEEEEEECTTCEEEE
T ss_pred             EeeeccCCCeEEEe-cCCCcccCC-CEEEEEEEEEECCCCccCCcEEEE---------EECCEEEeeEEeccCCCCeEEE
Confidence            34556778899955 467788889 999999999999998765555542         223443 111225999999999


Q ss_pred             EEEEEecceeeEeeecEE
Q 029361          101 SFELDAKVKGMFHGSPAL  118 (194)
Q Consensus       101 ~vvv~Pk~~G~fn~t~A~  118 (194)
                      .|...|...|.|++.+-+
T Consensus        79 ~f~~~~~~~G~~~v~AvV   96 (127)
T 3idu_A           79 TFNWTPTQEGMYRINATV   96 (127)
T ss_dssp             EEEECCSSCEEEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEEEE
Confidence            999999999999887543

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=96.67  E-value=0.016  Score=44.34  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=57.9

Q ss_pred             ceEEEEeecccccccccceeEEEEEEEEecCCc--ceeeeEEecCCCCCCCeeeecCce--eeEEEEecCCCceEEEEEE
Q 029361           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTS--TAYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFEL  104 (194)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s--~A~dV~L~D~sfp~e~Felv~G~~--s~~~erI~pg~nvsH~vvv  104 (194)
                      |-|.+.- +....+++| ..++|+.+|-|+|..  ++..|.|..           .|..  ......|++|++.+-.|..
T Consensus         3 PDL~vt~-itP~~~~~~-~~~ti~atVkN~G~~~a~~~~V~ly~-----------~g~~v~t~~v~~LaaG~s~tv~~~w   69 (114)
T 2l0d_A            3 PDLVPVS-LTPVTVVPN-TVNTMTATIENQGNKDSTSFNVSLLV-----------DGIVVDTQTVTSLESENSTNVDFHW   69 (114)
T ss_dssp             CCEEEEE-EECSEECTT-SEEEEEEEEEECSSSCBCCEEEEEEE-----------TTEEEEEEEESCBCBTCEEEEEEEE
T ss_pred             CCcEEEe-ccCCCcCCC-CeEEEEEEEEECCCCCCCCEEEEEEE-----------CCEEEcceecccccCCCEEEEEEEE
Confidence            4465554 345568999 999999999999987  455566553           3443  3456679999999999999


Q ss_pred             Eec-ceeeEeeecEE
Q 029361          105 DAK-VKGMFHGSPAL  118 (194)
Q Consensus       105 ~Pk-~~G~fn~t~A~  118 (194)
                      .|+ ..|.|.++..+
T Consensus        70 ~~~~~~G~ytl~a~V   84 (114)
T 2l0d_A           70 TLDGTANSYTLTVNV   84 (114)
T ss_dssp             ECCCSCSEEEEEEEE
T ss_pred             eecCcCceEEEEEEE
Confidence            998 58999987643

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=94.63  E-value=0.064  Score=40.06  Aligned_cols=68  Identities=12%  Similarity=0.006  Sum_probs=55.9

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEe-cCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLT-DDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHG  114 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~-D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~  114 (194)
                      ...+++| ++++++.++.|-=.-+-.|..++ +-      =-+..+ .......|+||+.+++.+.++|++.|.-.+
T Consensus        13 ~g~~~v~-~~l~v~vsf~NPL~~~L~~c~~~vEG------~GL~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L   81 (102)
T 2xzz_A           13 LGAAVVG-QECEVQIVFKNPLPVTLTNVVFRLEG------SGLQRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQL   81 (102)
T ss_dssp             SSCCCSS-SCEEEEEEEECCSSSCBCSEEEEEEE------TTTEEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCC
T ss_pred             CCCcccC-CeEEEEEEEECCCCCcccCEEEEEEC------CCCCcc-eEEEcCcCCCCCEEEEEEEEecCcccceEE
Confidence            5677889 99999999999988888888776 31      115555 677888999999999999999999998554

>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*

Probab=94.24  E-value=0.3  Score=41.12  Aligned_cols=75  Identities=12%  Similarity=-0.005  Sum_probs=54.1

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecC--ceeeEEEEecCCCceEEEEEEEecceeeEeeec
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISG--NISQSWERLDAGGILSHSFELDAKVKGMFHGSP  116 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G--~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t~  116 (194)
                      ...++.| +.+.+..++||..+.. .+|++.=.  ..+.|.....  ....+--.|++|+..+..+.|+|++.|..+++-
T Consensus        89 P~sv~rG-E~~~l~~~V~Ny~~~~-~~v~V~l~--~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G~~~i~v  164 (252)
T 3hrz_B           89 PYSVVKN-EQVEIRAILHNYVNED-IYVRVELL--YNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQGLHDVEI  164 (252)
T ss_dssp             CSCEETT-CCEEEEEEEEECSSSC-EEEEEEEC--CCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEECSSEEEEEEE
T ss_pred             CcEEeeC-CEEEEEEEEEcccCce-EEEEEEEE--cCCceEeecCCCCceEEEEEECCCCeEEEEEEEEeccCCcEEEEE
Confidence            4455677 9999999999998854 44444321  2345766542  223455679999999999999999999887764


Q ss_pred             E
Q 029361          117 A  117 (194)
Q Consensus       117 A  117 (194)
                      .
T Consensus       165 ~  165 (252)
T 3hrz_B          165 K  165 (252)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A

Probab=93.65  E-value=0.079  Score=47.17  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             eeEEEEEEEEecCCcceeeeE--EecCCCCCCCeeeecCce---------------eeEEEEecCCCceEEEEEEE
Q 029361           47 ERISVSIDIHNQGTSTAYDVS--LTDDSWPQDKFDVISGNI---------------SQSWERLDAGGILSHSFELD  105 (194)
Q Consensus        47 ~ditV~ytIYNvG~s~A~dV~--L~D~sfp~e~Felv~G~~---------------s~~~erI~pg~nvsH~vvv~  105 (194)
                      .++.|+.+|.|.|+.+..=++  +- |++|.+.|+|-.+..               ...+-.|+||+++++++-|-
T Consensus        36 ~~~~vk~tvtN~g~~~~~lLk~~~l-D~~~~~~~~V~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla  110 (343)
T 2x3c_A           36 DDVRVNLTLTNTGDKPIRLLKWQLP-GSDDAPLFLVERDGQPVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVS  110 (343)
T ss_dssp             SCCEEEEEEEECSSSCEEEEGGGSC-SSSCCCCEEEEETTEECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECT
T ss_pred             CCeEEEEEEEeCCCCceEeeccCCC-CcCccceEEEEeCCcccceeeEEEeccCCChhhcEEeCCCCeEEEEEehh
Confidence            789999999999998743222  23 468889999865421               13588999999999999984

>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}

Probab=93.45  E-value=0.11  Score=40.34  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             cccccccceeEEEEEEEEecCCc--ceeeeEEecCCCCCCCeeeecCce--eeEEEEecCCCceEEEEEEE--ecce---
Q 029361           39 LKRLKSGAERISVSIDIHNQGTS--TAYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFELD--AKVK---  109 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s--~A~dV~L~D~sfp~e~Felv~G~~--s~~~erI~pg~nvsH~vvv~--Pk~~---  109 (194)
                      ...+++| ..++|+.+|-|+|..  +|..|.+.-++ |..     +|.+  +.....|+||++.+-.+.+.  ++..   
T Consensus         9 P~~p~~g-~~vTvsatVkN~Gt~~s~a~~V~~yl~~-p~~-----gg~~vgt~tv~~LaaG~s~t~~v~~~~~~~~~~~a   81 (122)
T 2kut_A            9 KETPFEG-EEITVSARVTNRGAAEAHNVPVAVYLGN-PAQ-----GGVEIGRDTISRIPVGGTGLARVQWKATRKLAGRA   81 (122)
T ss_dssp             TTSCCTT-CEEEEEEEEECCSSSCBCCCCEEECSSC-TTT-----CCCCCBCCCCSCBCTTCEEECCEEEECCCCCSSCC
T ss_pred             CCCCCCC-CeEEEEEEEEeCCCcccCcEEEEEEeCC-Ccc-----CCeEEeeEEccccCCCCeEEEEEEEecCCcccccc
Confidence            4567889 999999999999988  67778877654 321     2232  33457899999999555544  4443   


Q ss_pred             --eeEeeecE
Q 029361          110 --GMFHGSPA  117 (194)
Q Consensus       110 --G~fn~t~A  117 (194)
                        |.|.+.+.
T Consensus        82 ~~Gsy~v~Av   91 (122)
T 2kut_A           82 ANPGVPVYAV   91 (122)
T ss_dssp             SCCCCCCCEE
T ss_pred             cCceEEEEEE
Confidence              88887653

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*

Probab=90.24  E-value=0.77  Score=44.71  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             EEEEeeccccc----------ccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEE
Q 029361           31 IVAHKKASLKR----------LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSH  100 (194)
Q Consensus        31 LlvsK~i~~~~----------~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH  100 (194)
                      +++.|.+....          +++| +++++++++.|-=..+-.|..|+=+     .=-|..|..+.....|+||+.+++
T Consensus       583 ~~~~~di~l~~P~l~I~v~g~~~v~-~~l~v~v~f~NPL~~~L~~c~~~vE-----G~GL~~~~~~~~~~~v~pg~~~~~  656 (692)
T 1vjj_A          583 VVVERDIILDNPTLTLEVLNEARVR-KPVNVQMLFSNPLDEPVRDCVLMVE-----GSGLLLGNLKIDVPTLGPKERSRV  656 (692)
T ss_dssp             EEEEEEEECBCCCEEEEECSCCBTT-SCEEEEEEEECCSSSCBCSEEEEEE-----CTTTSSSCEEEEECCBCTTCEEEE
T ss_pred             EEEEEEEEEcCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEE-----CCCCCCCceEEEcCccCCCCEEEE
Confidence            77888775554          5788 9999999999998888888877621     112566677888899999999999


Q ss_pred             EEEEEecceeeEeee
Q 029361          101 SFELDAKVKGMFHGS  115 (194)
Q Consensus       101 ~vvv~Pk~~G~fn~t  115 (194)
                      .+.++|++.|.-.+.
T Consensus       657 ~~~~~P~~~G~r~L~  671 (692)
T 1vjj_A          657 RFDILPSRSGTKQLL  671 (692)
T ss_dssp             EEEECCCSCEEEEEE
T ss_pred             EEEEEeccccceEEE
Confidence            999999999997764

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.10  E-value=0.81  Score=32.71  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             CceEEEEeecccc-cccccceeEEEEEEEEecCCcceeeeEEecCCC-CCCCeeeecCceeeEEEEecCCCceEEEEEEE
Q 029361           28 VPFIVAHKKASLK-RLKSGAERISVSIDIHNQGTSTAYDVSLTDDSW-PQDKFDVISGNISQSWERLDAGGILSHSFELD  105 (194)
Q Consensus        28 ~a~LlvsK~i~~~-~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sf-p~e~Felv~G~~s~~~erI~pg~nvsH~vvv~  105 (194)
                      +|.+-+++...+= ....| ...+-+++|.|.|+.++. .++.++.= ....|.+     +-.-..|+||+..+-.++..
T Consensus         7 ~P~i~~~~~~ldFG~v~~g-~~~~~~~~l~N~g~~p~~-~~~~~~~~~~~~~f~v-----~p~~g~i~pg~~~~i~V~f~   79 (112)
T 2e6j_A            7 GPKIHFNFELLDIGKVFTG-SAHCYEAILYNKGSIDAL-FNMTPPTSALGACFVF-----SPKEGIIEPSGVQAIQISFS   79 (112)
T ss_dssp             CCSEEESCSEEEEEEEESS-CCEEEEEEEEECCSSCEE-EEECCCSSHHHHHCEE-----ESSEEEECTTBCCEEEEEEC
T ss_pred             CCEEEECcccEecEeEEEC-CEEEEEEEEEECCcceEE-EEEecCCccccCcEEE-----ECCcCEECCCCEEEEEEEEE
Confidence            4555565544333 34456 889999999999997654 33322110 0011322     23446899999999999999


Q ss_pred             ecceeeEeee
Q 029361          106 AKVKGMFHGS  115 (194)
Q Consensus       106 Pk~~G~fn~t  115 (194)
                      |+..|.|+-+
T Consensus        80 ~~~~g~f~~~   89 (112)
T 2e6j_A           80 SIILGNFEEE   89 (112)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCcceEEEE
Confidence            9999999865

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.73  E-value=1.6  Score=32.24  Aligned_cols=83  Identities=12%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEe
Q 029361           27 DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDA  106 (194)
Q Consensus        27 ~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~P  106 (194)
                      ..+.|-+...+.-.....| ..-+-++.|-|.|+.++. .++..    +..|.+--     .-..|+||+..+-++.-.|
T Consensus        22 ~~~~l~~p~~l~fg~~~v~-~~~~~~~~l~N~g~~~~~-f~~~~----~~~F~i~P-----~~g~L~pg~~~~i~V~F~P   90 (122)
T 2ys4_A           22 ARAILDFPDKLNFSTCPVK-YSTQKILLVRNIGNKNAV-FHIKT----CRPFSIEP-----AIGTLNVGESMQLEVEFEP   90 (122)
T ss_dssp             CCCCCCCCSEECCCSEESS-SCEEEEEEEECCSSSCEE-EEEEC----CTTEEEES-----SEEEECTTCEEEEEEEECC
T ss_pred             CCcEECCCCeeecCCeecC-CeEEEEEEEEECCCCCEE-EEEec----CCCeEEEC-----CcCEECCCCEEEEEEEEEc
Confidence            3344555566777777888 999999999999997663 34332    34686632     2388999999999999999


Q ss_pred             cceeeEeeecEEEEE
Q 029361          107 KVKGMFHGSPALITF  121 (194)
Q Consensus       107 k~~G~fn~t~A~VtY  121 (194)
                      +..|.|+..- .+.|
T Consensus        91 ~~~g~~~~~l-~v~~  104 (122)
T 2ys4_A           91 QSVGDHSGRL-IVCY  104 (122)
T ss_dssp             SSSBCCCCBC-EEEE
T ss_pred             CCCccEEEEE-EEEE
Confidence            9999998765 5556

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=86.78  E-value=1.5  Score=40.29  Aligned_cols=73  Identities=8%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             EEEEeecccccccccceeEEEEEEEEecCCccee-------eeEEecCCC------CCCCeeeecCceeeEEEEecCCCc
Q 029361           31 IVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLTDDSW------PQDKFDVISGNISQSWERLDAGGI   97 (194)
Q Consensus        31 LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~-------dV~L~D~sf------p~e~Felv~G~~s~~~erI~pg~n   97 (194)
                      -+.-|-..-+|-|.| +.++++++|-|.|+++..       +|.+.|++.      .++....-.|..+-.  -|+||++
T Consensus       283 ~V~~~v~~A~Y~vpg-R~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET  359 (419)
T 3rfr_A          283 QVTTELNGGVYKVPG-RELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES  359 (419)
T ss_dssp             CCEEEEEEEEEESSS-SEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred             ceEEEEeceEEecCC-cEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence            355566667899999 999999999999999865       677776544      344554455644333  8999999


Q ss_pred             eEEEEEEEe
Q 029361           98 LSHSFELDA  106 (194)
Q Consensus        98 vsH~vvv~P  106 (194)
                      .+-++.+.-
T Consensus       360 rt~~V~a~d  368 (419)
T 3rfr_A          360 KEIVVKIQD  368 (419)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEeeh
Confidence            999988773

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A

Probab=86.02  E-value=2.2  Score=41.77  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             ceEEEEeeccccc----------ccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCce
Q 029361           29 PFIVAHKKASLKR----------LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGIL   98 (194)
Q Consensus        29 a~LlvsK~i~~~~----------~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nv   98 (194)
                      -.+++.|.+....          +++| +++++++++.|-=..+-.|..|+=+     .=-|..+ .......|+||+.+
T Consensus       617 ~~~~~~~di~l~~P~l~I~v~g~~~v~-~~l~v~vsf~NPL~~~L~~c~~~vE-----G~GL~~~-~~~~~~~v~pg~~~  689 (731)
T 1ex0_A          617 DVLAKQKSTVLTIPEIIIKVRGTQVVG-SDMTVTVQFTNPLKETLRNVWVHLD-----GPGVTRP-MKKMFREIRPNSTV  689 (731)
T ss_dssp             CEEEEEEEEECBCCCCEEEEEECCBTT-SCEEEEEEEECCSSSCEEEEEEEEE-----ETTTEEE-EEEEEEEECTTCEE
T ss_pred             eEEEEEEEEEEeCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEE-----CCCCCce-eeEecCccCCCCEE
Confidence            3477777775544          5788 9999999999998888888877621     0115555 67888999999999


Q ss_pred             EEEEEEEecceeeEeee
Q 029361           99 SHSFELDAKVKGMFHGS  115 (194)
Q Consensus        99 sH~vvv~Pk~~G~fn~t  115 (194)
                      ++.+.++|++.|.-.+.
T Consensus       690 ~~~~~~~P~~~G~r~L~  706 (731)
T 1ex0_A          690 QWEEVCRPWVSGHRKLI  706 (731)
T ss_dssp             EEEEEECCSSCEEEEEE
T ss_pred             EEEEEEEeccccceEEE
Confidence            99999999999997764

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=85.28  E-value=3.4  Score=33.54  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=54.8

Q ss_pred             CCceEEEEeecccccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEE--EEecCCCceEEEEEE
Q 029361           27 DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW--ERLDAGGILSHSFEL  104 (194)
Q Consensus        27 ~~a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~--erI~pg~nvsH~vvv  104 (194)
                      ..|.+-++ ...+=.-+.| +..+.+++|.|.|+++   +.|.|-       .---|-+...|  +.|+||++.+-.++.
T Consensus       116 ~~~~i~~~-~~~dfG~i~g-~~~~~~f~i~N~G~~p---L~I~~v-------~~scgct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          116 QTGVMELS-TYLDMGQLDG-ETTKAAIEIRNVGAGP---LRLHSV-------TTRNPALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             GCCCEECC-CEEEEEECTT-SCEEEEEEEEECSSSC---EEEEEE-------EECSTTEEEEESCSEECTTCEEEEEEEE
T ss_pred             cCCEEEEE-eEEeeeccCC-CeEEEEEEEEECCCCC---EEEEEE-------EeCCCCEeeecCCccCCCCCEEEEEEEE
Confidence            45667666 4434444555 9999999999999985   334332       12234454444  579999999999999


Q ss_pred             Eecce-ee----EeeecEE
Q 029361          105 DAKVK-GM----FHGSPAL  118 (194)
Q Consensus       105 ~Pk~~-G~----fn~t~A~  118 (194)
                      .|+.. |.    |+-+-.+
T Consensus       184 ~~~~~~g~~~~~~~~~i~v  202 (220)
T 2qsv_A          184 DPQVMKAEGWQSIAADISI  202 (220)
T ss_dssp             CHHHHHHTTCSEEEEEEEE
T ss_pred             ecCCCCCcccceeccEEEE
Confidence            99988 88    7765444

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*

Probab=84.88  E-value=1.5  Score=42.68  Aligned_cols=81  Identities=11%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             ceEEEEeeccccc----------ccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEE-EEecCCCc
Q 029361           29 PFIVAHKKASLKR----------LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW-ERLDAGGI   97 (194)
Q Consensus        29 a~LlvsK~i~~~~----------~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~-erI~pg~n   97 (194)
                      -.+++.|.+....          +++| +++++++++.|-=..+-.|..|+=+     .=-|..++...+. ..|+||+.
T Consensus       574 ~~~~~~~di~l~~P~l~I~v~g~~~v~-~~~~v~v~f~NPL~~~L~~c~~~vE-----G~GL~~~~~~~~~~~~v~pg~~  647 (687)
T 2q3z_A          574 SYLLAERDLYLENPEIKIRILGEPKQK-RKLVAEVSLQNPLPVALEGCTFTVE-----GAGLTEEQKTVEIPDPVEAGEE  647 (687)
T ss_dssp             EEEEEEEEEECBCCCCEEEEESCCSSS-SCEEEEEEEECCSSSCBCSEEEEEE-----CTTTCSSCEEEEECSCBCTTCE
T ss_pred             eEEEEEEEEEEeCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEE-----CCCCCCCceEEecCCCcCCCCE
Confidence            3477777765554          4678 9999999999998888888877621     1125666677888 78999999


Q ss_pred             eEEEEEEEecceeeEeee
Q 029361           98 LSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        98 vsH~vvv~Pk~~G~fn~t  115 (194)
                      +++.+.++|++.|.-.+.
T Consensus       648 ~~~~~~~~P~~~G~~~L~  665 (687)
T 2q3z_A          648 VKVRMDLVPLHMGLHKLV  665 (687)
T ss_dssp             EEEEEEECCCSSSCEEEE
T ss_pred             EEEEEEEEeccccceEEE
Confidence            999999999999987753

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=84.85  E-value=5.1  Score=30.69  Aligned_cols=69  Identities=13%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             ccceeEEEEEEEEecCCcce---------eeeEEec-CCCCCCCeeeecCce---eeEEEEecCCCceEEEEEEE-ecce
Q 029361           44 SGAERISVSIDIHNQGTSTA---------YDVSLTD-DSWPQDKFDVISGNI---SQSWERLDAGGILSHSFELD-AKVK  109 (194)
Q Consensus        44 ~g~~ditV~ytIYNvG~s~A---------~dV~L~D-~sfp~e~Felv~G~~---s~~~erI~pg~nvsH~vvv~-Pk~~  109 (194)
                      .| ..+.+.++|-|.|+.+-         +|+.|.| ++  .+.|.--.|.+   -..-..|+||+..+...+.- +...
T Consensus        16 ~g-~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G--~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~p   92 (120)
T 3isy_A           16 EP-EQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEH--KERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEP   92 (120)
T ss_dssp             CS-SCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTC--CEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCS
T ss_pred             CC-CeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCC--CEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCC
Confidence            56 79999999999998542         3555554 21  22222222221   23457899999999999999 5678


Q ss_pred             eeEeee
Q 029361          110 GMFHGS  115 (194)
Q Consensus       110 G~fn~t  115 (194)
                      |.|...
T Consensus        93 G~Ytl~   98 (120)
T 3isy_A           93 GTYEVK   98 (120)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence            888754

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=82.79  E-value=3.5  Score=37.56  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=54.4

Q ss_pred             ceEEEEeecccccccccceeEEEEEEEEecCCccee-------eeEEecCC-------CCCCCeeeecCceeeEEEE-ec
Q 029361           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLTDDS-------WPQDKFDVISGNISQSWER-LD   93 (194)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~ditV~ytIYNvG~s~A~-------dV~L~D~s-------fp~e~Felv~G~~s~~~er-I~   93 (194)
                      +..+.-|-..-+|-|.| +.++++.+|-|.|+++..       +|.+.|++       +|++ . +-.+-++++=+. |+
T Consensus       247 ~~~V~~~v~~A~Y~vpg-R~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~-l-la~~gL~vsd~~pI~  323 (382)
T 1yew_A          247 APTVSVKVEDATYRVPG-RAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPED-L-LAEDGLSVSDNSPLA  323 (382)
T ss_dssp             CCSEEEEEEEEEEESSC-SEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGG-G-EETTCEEESCCSCBC
T ss_pred             CCceEEEeeccEEecCC-cEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHH-h-hccCCceeCCCCCcC
Confidence            34566777778999999 999999999999999875       66675533       3332 1 334345655555 99


Q ss_pred             CCCceEEEEEEE
Q 029361           94 AGGILSHSFELD  105 (194)
Q Consensus        94 pg~nvsH~vvv~  105 (194)
                      ||++.+-++.+.
T Consensus       324 PGETr~~~v~a~  335 (382)
T 1yew_A          324 PGETRTVDVTAS  335 (382)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceeEEEEEee
Confidence            999999988876

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=82.43  E-value=2.9  Score=39.72  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCc-eeeEEEEecCCCceEEEEEEEecceeeEeeec
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGN-ISQSWERLDAGGILSHSFELDAKVKGMFHGSP  116 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~-~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t~  116 (194)
                      ...++.| +.+++..+|+|..+. ...|++.=.  +.+.|.+..+. ...++ .|+||+..+..|.|+|++.|..+++.
T Consensus       161 P~~v~~G-D~~~i~~~V~N~~~~-~~~v~v~l~--~~~~~~~~~~~~~~~~~-~v~a~~~~~v~f~i~~~~~G~~~i~v  234 (767)
T 4fxk_B          161 PMSVRRF-EQLELRPVLYNYLDK-NLTVSVHVS--PVEGLCLAGGGGLAQQV-LVPAGSARPVAFSVVPTAAAAVSLKV  234 (767)
T ss_dssp             CSCEETT-CEEEECCEEEECSSS-CEEEEEEEC--CCTTEECSSSSCCCEEE-EECSSCEEECCEEEEECSCSEEEEEE
T ss_pred             CCeeccC-CEEEEEEEEEECCCC-CEEEEEEEE--ecCCeEEecCCceeEEE-EEcCCCeEEEEEEEEECccCcEEEEE
Confidence            4556777 999999999999875 344444321  33556555443 33444 59999999999999999999887754

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4

Probab=81.43  E-value=2.9  Score=40.80  Aligned_cols=80  Identities=11%  Similarity=0.037  Sum_probs=60.2

Q ss_pred             ceEEEEeecccc----------cccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEE-EEecCCCc
Q 029361           29 PFIVAHKKASLK----------RLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW-ERLDAGGI   97 (194)
Q Consensus        29 a~LlvsK~i~~~----------~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~-erI~pg~n   97 (194)
                      -.+++.|.+...          .+++| +++++++++.|-=..+-.|..|+=.     .=-|..+ ..... ..|+||+.
T Consensus       572 ~~~~~~~di~l~~P~l~I~v~g~~~v~-~~l~a~vsf~NPL~~~L~~c~~~vE-----G~GL~~~-~~~~~~~~v~Pg~~  644 (695)
T 1g0d_A          572 GPIMTVANIPLSTPELLVQVPGKAVVW-EPLTAYVSFTNPLPVPLKGGVFTLE-----GAGLLSA-TQIHVNGAVAPSGK  644 (695)
T ss_dssp             -EEEEEEEEECBCCCCEEECCSCEETT-CCEEEEEEEECCSSSCEESCEEEEE-----ETTTEEE-EEEECSSEECTTCE
T ss_pred             eEEEEEEEEEEcCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEE-----CCCCCcc-eEEecCCCcCCCCE
Confidence            347777776444          45788 9999999999988877777776511     0114455 56777 78999999


Q ss_pred             eEEEEEEEecceeeEeee
Q 029361           98 LSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        98 vsH~vvv~Pk~~G~fn~t  115 (194)
                      +++.+.++|++.|.-.+.
T Consensus       645 ~~~~~~~~P~~~G~r~L~  662 (695)
T 1g0d_A          645 VSVKLSFSPMRTGVRKLL  662 (695)
T ss_dssp             EEEEEEECCSSCEEEEEE
T ss_pred             EEEEEEEEcCCccceEEE
Confidence            999999999999997753

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=80.98  E-value=5.2  Score=41.47  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEeeecEE
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL  118 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t~A~  118 (194)
                      ...++.| +.+++..+|||..+. +.+|++.=.  .++.|++..+.....=-.|++|+..+..+.|+|++.|..+++..-
T Consensus       776 P~sv~rG-E~~~l~~~V~N~~~~-~~~v~V~l~--~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~v~p~~~G~~~i~v~a  851 (1451)
T 4acq_A          776 PYSVIRG-EAFTLKATVLNYLPK-CIRVSVQLE--ASPAFLAVPVEKEQAPHCICANGRQTVSWAVTPKSLGNVNFTVSA  851 (1451)
T ss_dssp             CSEEESS-SCEEEEEEEEECSSS-CEEEEEEEC--CCTTEEEEESCSCCCCEEECTTEEEEEEEEEEECSCEEEEEEEEE
T ss_pred             CceEecC-CEEEEEEEEEeccCc-cEEEEEEEE--cCCCeEeecCCCCceEEEECCCCeEEEEEEEEECccceEEEEEEE
Confidence            5566777 999999999999774 444444321  234688876532222235999999999999999999998877654


Q ss_pred             EE
Q 029361          119 IT  120 (194)
Q Consensus       119 Vt  120 (194)
                      .+
T Consensus       852 ~~  853 (1451)
T 4acq_A          852 EA  853 (1451)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.43
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	96.02
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	95.58
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	95.18
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	95.09
d3es6b1	118	Prolactin-inducible protein, PIP {Human (Homo sapi	88.83
d2vo8a1	136	Exo-alpha-sialidase {Clostridium perfringens [TaxI	80.01

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.43  E-value=0.0063  Score=43.61  Aligned_cols=73  Identities=21%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             cccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEec---ceeeEeeecEEE
Q 029361           43 KSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAK---VKGMFHGSPALI  119 (194)
Q Consensus        43 v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk---~~G~fn~t~A~V  119 (194)
                      ..| +.++++.++.|.|+.++.++.+.-+  .|+.|.+     +..-..|+||++.+..+.|.|-   ..|.|.++   +
T Consensus        14 ~pG-~~~~~~vtVtN~g~~~~~~~~~~~~--~P~GW~v-----~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~---~   82 (103)
T d1w8oa1          14 EPG-QQVTVPVAVTNQSGIAVPKPSLQLD--ASPDWQV-----QGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVG---A   82 (103)
T ss_dssp             CTT-CEEEEEEEEECCSSSCBSSCEEEEE--CCTTSEE-----EEEECCBCTTCEEEEEEEEECCTTCCCEEEEEE---E
T ss_pred             CCC-CeEEEEEEEEeCCCCceeeeeEEEc--CCCCccc-----cCcceeeCCCCcEEEEEEEECCCCCCCceEEEE---E
Confidence            356 9999999999999999998877763  2456654     3445579999999999999964   45888875   4


Q ss_pred             EEEcCCC
Q 029361          120 TFRIPTK  126 (194)
Q Consensus       120 tY~~se~  126 (194)
                      +++...+
T Consensus        83 ~a~~~~~   89 (103)
T d1w8oa1          83 TLRTSAG   89 (103)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCc
Confidence            4444444

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=96.02  E-value=0.011  Score=42.38  Aligned_cols=71  Identities=14%  Similarity=0.121  Sum_probs=56.8

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEeee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t  115 (194)
                      ...+++| ++++++.++.|-=..+-.|..++=++     =-|..+........|+||+.+++.+.++|++.|.-.+.
T Consensus         8 ~~~~~v~-~~~~v~vsf~NPL~~~L~~c~f~vEG-----~GL~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l~   78 (99)
T d1vjja3           8 LNEARVR-KPVNVQMLFSNPLDEPVRDCVLMVEG-----SGLLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQLL   78 (99)
T ss_dssp             CSCCBTT-SCEEEEEEEECCSSSCBCSEEEEEEC-----TTTSSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred             CCCcCcC-CeEEEEEEEECCCCCchhCEEEEEEe-----CCCCCccEEEecCccCCCCEEEEEEEEEcCCcccEEEE
Confidence            5568899 99999999999988888888776321     11334455667888999999999999999999998764

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=95.58  E-value=0.034  Score=39.69  Aligned_cols=70  Identities=13%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEeee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t  115 (194)
                      ...+++| ++++++.++.|-=..+=.|+.++=++  +.   +.. ..+.....|+||+.+++.+.++|++.|.-.+.
T Consensus        10 ~g~~~v~-~~~~v~v~F~NPL~~~L~nc~~~vEG--~G---L~~-~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l~   79 (100)
T d1ex0a3          10 RGTQVVG-SDMTVTVQFTNPLKETLRNVWVHLDG--PG---VTR-PMKKMFREIRPNSTVQWEEVCRPWVSGHRKLI   79 (100)
T ss_dssp             EECCBTT-SCEEEEEEEECCSSSCEEEEEEEEEE--TT---TEE-EEEEEEEEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             CCCcccC-CeEEEEEEEECCCCCchhCEEEEEEc--CC---Cce-eeEEecCccCCCCEEEEEEEEecCCcccEEEE
Confidence            5678899 99999999999988888888876321  00   222 24678899999999999999999999998764

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=95.18  E-value=0.022  Score=40.52  Aligned_cols=71  Identities=11%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEE-EEecCCCceEEEEEEEecceeeEeee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW-ERLDAGGILSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~-erI~pg~nvsH~vvv~Pk~~G~fn~t  115 (194)
                      ...+++| ++++++.++.|-=..+-.|+.++=++     =.+..+...... +.|+||+.+++.+.++|++.|.-.+.
T Consensus         9 ~g~~~vg-~~~~v~vsF~NPL~~~L~~c~~~vEG-----~GL~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~   80 (98)
T d2q3za3           9 LGEPKQK-RKLVAEVSLQNPLPVALEGCTFTVEG-----AGLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLV   80 (98)
T ss_dssp             ESCCSSS-SCEEEEEEEECCSSSCBCSEEEEEEC-----TTTCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEEE
T ss_pred             CCCcCcC-CeEEEEEEEECCCCCchhCEEEEEEc-----CCcCcCcEEEeCCCccCCCCEEEEEEEEEcCCcccEEEE
Confidence            6778899 99999999999988888888776321     013333444555 35999999999999999999997764

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=95.09  E-value=0.027  Score=40.26  Aligned_cols=71  Identities=10%  Similarity=0.012  Sum_probs=51.9

Q ss_pred             cccccccceeEEEEEEEEecCCcceeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEeee
Q 029361           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGS  115 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNvG~s~A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t  115 (194)
                      ...+++| +++++++++.|-=..+-.|+.++=++     =-|..+........|+||+.+++.+.++|++.|.-.+.
T Consensus         9 ~g~~~v~-~~~~v~vsf~NPL~~~L~~c~~~vEG-----~GL~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~L~   79 (101)
T d1g0da3           9 PGKAVVW-EPLTAYVSFTNPLPVPLKGGVFTLEG-----AGLLSATQIHVNGAVAPSGKVSVKLSFSPMRTGVRKLL   79 (101)
T ss_dssp             CSCEETT-CCEEEEEEEECCSSSCEESCEEEEEE-----TTTEEEEEEECSSEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             CCCcCcC-CeEEEEEEEECCCCCeecCEEEEEEc-----CCCCcccEEEecCCcCCCCEEEEEEEEEcCCcccEEEE
Confidence            5668899 99999999999887777777665210     00122222212357999999999999999999998764

>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: SVA-like
domain: Prolactin-inducible protein, PIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.83  E-value=1.1  Score=31.69  Aligned_cols=71  Identities=4%  Similarity=0.019  Sum_probs=48.1

Q ss_pred             ccccccceeEEEEEEEEecCCcc-eeeeEEecCCCCCCCeeeecCceeeEEEEecCCCceEEEEEEEecceeeEeeecE
Q 029361           40 KRLKSGAERISVSIDIHNQGTST-AYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPA  117 (194)
Q Consensus        40 ~~~v~g~~ditV~ytIYNvG~s~-A~dV~L~D~sfp~e~Felv~G~~s~~~erI~pg~nvsH~vvv~Pk~~G~fn~t~A  117 (194)
                      -.+..| ++++++.++||.-+.. ...|+|.    +.+.|+...+. ..+ .-|++|+..++.+.++|...+.+..++.
T Consensus        16 ~sv~rg-e~~~i~~~V~Nyl~~~~~v~v~L~----~s~~~~~~~~~-~~~-~cv~~~~~~t~~w~i~~~g~v~itv~a~   87 (118)
T d3es6b1          16 KSVRPN-DEVTAVLAVQTELKECMVVKTYLI----SSIPLQGAFNY-KYT-ACLCDDNPKTFYWDFYTNRTVQIAAVVD   87 (118)
T ss_dssp             SEECSS-CCEEEEEEEEECCSSCEEEEEEEE----ESSCCCSGGGC-EEE-EEECSSSCEEEEEEECCSSCEEEEEEEE
T ss_pred             ceEecC-CEEEEEEEEEECccceEEEEEEEe----cCCCEEccCCC-Ccc-eEECCCCceEEEEEEEecCcEEEEEEEE
Confidence            335667 9999999999999863 3344554    33456655432 333 3889999999999999875555444433

>d2vo8a1 b.2.2.2 (A:939-1074) Exo-alpha-sialidase {Clostridium perfringens [TaxId: 1502]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family III
domain: Exo-alpha-sialidase
species: Clostridium perfringens [TaxId: 1502]

Probab=80.01  E-value=2.5  Score=31.59  Aligned_cols=54  Identities=9%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             cccccccceeEEEEEEEEec-CCcc--eeeeEEecCCCCCCCeeeecCc-----eeeEEEEecCCC
Q 029361           39 LKRLKSGAERISVSIDIHNQ-GTST--AYDVSLTDDSWPQDKFDVISGN-----ISQSWERLDAGG   96 (194)
Q Consensus        39 ~~~~v~g~~ditV~ytIYNv-G~s~--A~dV~L~D~sfp~e~Felv~G~-----~s~~~erI~pg~   96 (194)
                      ++...+| +.+.|.|.|-++ |+..  |+|+++.   |.|+.|++++..     .+..--..+||.
T Consensus        11 ~~~V~vG-e~f~v~~gl~~~~~d~~vyA~d~~~~---Ydp~~fe~vs~~S~~dgv~I~~~ev~~Gk   72 (136)
T d2vo8a1          11 NDEVQVG-SAFEAILGIEGLNGDTEVYSAEYLFE---YNAEAFILNEITSFNDSLFVKSKEVEPGK   72 (136)
T ss_dssp             CSEEETT-CCEEEEEEEESCCTTCCEEEEEEEEE---CCTTTEEEEEEEESSTTEEEEEEEEETTE
T ss_pred             cceEeec-ceEEEEEchhhccCccceEeeEEEEE---cChhhEEEEEeeccccceEEEeeecCCcE
Confidence            5667788 999999999999 7866  6677765   889999999875     344555556665