Citrus Sinensis ID: 029364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Secondary Structure (PSIPRED)
cccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHcHHHHcccccccccccHHHccccccEEEHHccccEEEEEEcccccEEEEEEEEEEccccEEEEEEEEcccccccccEEEEcccccccEEEEEEEccccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccccccccEEEcccccccccccccEEEEccccccEEEEEEEccccccccccEEEEEccccccEEEcccccccccHHccEEEccccccccHHcccccccEEEEccHHHHEEEEEHHHHHHcccEEEEEEEcccEEEEEEEEccccccccHHHHHHHHHHEcccEEEEEEccEEEEEccc
Coil and Loop (DISEMBL)
MGLEVRVSRMSEcissiplsnsvpvtkirtlsgskwrpkngsvrngnlqyamctfkppsknqelfdelgfkdkfsvnsaEENSREIAEVKEEkreeekdgsdgssekvkLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVrpnllsgepeRLLLEDICQVFFFICVVyfpvhdmvckd
Flexible Loop (DISEMBL)
MGLEVRVSRMSEcissiplsnsvpvtkirtlsgskwrpkngsvrnGNLQYAMCTFKPPSKNQELFDELGFKDkfsvnsaeensreiaevkeekreeekdgsdgssekvklrrgrqvmrrsNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Low Complexity Region (SEG)
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSReiaevkeekreeekdgsdgssekVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Disordered region (IsUnstruct)
*********************************************GNLQYAMCTF*****************************************************************NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVC**
Disordered Region (DISOPRED)
****VRVSRMSECISSIPLSNSVP****************************************FDEL******************************************************LAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Disordered Region (DISEMBL)
**********SECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSV**************************************QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Disordered Region (DISPRO)
*GLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKD**DGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSxxxxxxxxxxxxxxxxxxxxxxxxGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVHDMVCKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
359481313	332	PREDICTED: uncharacterized protein LOC10	0.835	0.487	0.399	6e-27
225439715	377	PREDICTED: uncharacterized protein LOC10	0.835	0.429	0.399	6e-27
147840953	377	hypothetical protein VITISV_011642 [Viti	0.835	0.429	0.399	1e-26
224091128	347	predicted protein [Populus trichocarpa]	0.505	0.282	0.621	3e-24
118487679	257	unknown [Populus trichocarpa]	0.474	0.357	0.649	3e-24
356568220	382	PREDICTED: uncharacterized protein LOC10	0.417	0.212	0.674	5e-24
449449956	473	PREDICTED: uncharacterized protein LOC10	0.587	0.241	0.515	2e-23
449502678	473	PREDICTED: uncharacterized LOC101206450	0.587	0.241	0.515	2e-23
255575602	149	hypothetical protein RCOM_1058350 [Ricin	0.345	0.449	0.805	1e-22
297827441	331	hypothetical protein ARALYDRAFT_482866 [	0.860	0.504	0.387	3e-20

>gi|359481313|ref|XP_003632606.1| PREDICTED: uncharacterized protein LOC100261869 isoform 2 [Vitis vinifera]

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 114/218 (52%), Gaps = 56/218 (25%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGS------------VRNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSTLLLNSTVRIRNLGFTTRDWNPRNHAKLSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSTSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQV 176
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +V
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRV 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439715|ref|XP_002268101.1| PREDICTED: uncharacterized protein LOC100261869 isoform 1 [Vitis vinifera] gi|297735530|emb|CBI18024.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 114/218 (52%), Gaps = 56/218 (25%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGS------------VRNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSTLLLNSTVRIRNLGFTTRDWNPRNHAKLSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSTSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQV 176
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +V
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRV 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840953|emb|CAN71020.1| hypothetical protein VITISV_011642 [Vitis vinifera]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 114/218 (52%), Gaps = 56/218 (25%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGS------------VRNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSXLLLNSTVRIRNLGFTTRDWNPRNHAKPSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSXSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQV 176
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +V
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRV 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091128|ref|XP_002309189.1| predicted protein [Populus trichocarpa] gi|222855165|gb|EEE92712.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 81/103 (78%), Gaps = 5/103 (4%)

Query: 85  EIAEVKEEKRE--EEKDGSDGSSEKVKLR---RGRQVMRRSNLLAKQVISIQSAMSLGFV 139
           +I E+K+ +++  EE+D      E+ K+R   RG+QV+RRS++LAKQVISIQSA+SLGFV
Sbjct: 88  DILELKDGEKDGKEEQDLVAVEKERNKIRNGRRGKQVIRRSSILAKQVISIQSALSLGFV 147

Query: 140 SQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICV 182
           SQ+WVDT SWVVLVVEVRPNLLSGE ER LLED+ QV   + V
Sbjct: 148 SQIWVDTKSWVVLVVEVRPNLLSGESERFLLEDVSQVGDVVLV 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487679|gb|ABK95664.1| unknown [Populus trichocarpa]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 79/97 (81%), Gaps = 5/97 (5%)

Query: 85  EIAEVKEEKRE--EEKDGSDGSSEKVKLR---RGRQVMRRSNLLAKQVISIQSAMSLGFV 139
           +I E+K+ +++  EE+D      E+ K+R   RG+QV+RRS++LAKQVISIQSA+SLGFV
Sbjct: 88  DILELKDGEKDGKEEQDLVAVEKERNKIRNGRRGKQVIRRSSILAKQVISIQSALSLGFV 147

Query: 140 SQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQV 176
           SQ+WVDT SWVVLVVEVRPNLLSGE ER LLED+ QV
Sbjct: 148 SQIWVDTKSWVVLVVEVRPNLLSGESERFLLEDVSQV 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568220|ref|XP_003552311.1| PREDICTED: uncharacterized protein LOC100806448 [Glycine max]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%), Gaps = 5/86 (5%)

Query: 91  EEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWV 150
           +E+ E EK G      K+++RRG++V+RRSNLLAKQVISI SA+SLGFVSQLWVDT+SW+
Sbjct: 140 DEEGENEKFGG-----KLRVRRGKEVIRRSNLLAKQVISIHSALSLGFVSQLWVDTSSWM 194

Query: 151 VLVVEVRPNLLSGEPERLLLEDICQV 176
           VL VEVRPNLLSG+ E+ LL+DI QV
Sbjct: 195 VLFVEVRPNLLSGDSEKFLLDDISQV 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449956|ref|XP_004142730.1| PREDICTED: uncharacterized protein LOC101206450 [Cucumis sativus]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 12/126 (9%)

Query: 69  GFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVI 128
           G K + +   + E  R +  +++E  E E       + KV LR+ RQVMRRSN+LAKQVI
Sbjct: 210 GKKKRLNSERSSEGERNLVPIEDEDAEIE-------NGKVALRKRRQVMRRSNMLAKQVI 262

Query: 129 SIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVH 188
           SIQSA+SLGFVSQLWVDT++W+V  +EV+PNLLSGE E  LLEDI QV   +      VH
Sbjct: 263 SIQSALSLGFVSQLWVDTSAWMVKFLEVKPNLLSGESEWFLLEDISQVGDVVL-----VH 317

Query: 189 DMVCKD 194
           D    D
Sbjct: 318 DETVMD 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502678|ref|XP_004161711.1| PREDICTED: uncharacterized LOC101206450 [Cucumis sativus]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 12/126 (9%)

Query: 69  GFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVI 128
           G K + +   + E  R +  +++E  E E       + KV LR+ RQVMRRSN+LAKQVI
Sbjct: 210 GKKKRLNSERSSEGERNLVPIEDEDAEIE-------NGKVALRKRRQVMRRSNMLAKQVI 262

Query: 129 SIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVFFFICVVYFPVH 188
           SIQSA+SLGFVSQLWVDT++W+V  +EV+PNLLSGE E  LLEDI QV   +      VH
Sbjct: 263 SIQSALSLGFVSQLWVDTSAWMVKFLEVKPNLLSGESEWFLLEDISQVGDVVL-----VH 317

Query: 189 DMVCKD 194
           D    D
Sbjct: 318 DETVMD 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575602|ref|XP_002528701.1| hypothetical protein RCOM_1058350 [Ricinus communis] gi|223531873|gb|EEF33690.1| hypothetical protein RCOM_1058350 [Ricinus communis]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 62/67 (92%)

Query: 110 LRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLL 169
           LRRG+QV+RRSNLLAKQVISI SA++LGFVSQ+WVD  SW+VLVVEVRPNLLSGE ERLL
Sbjct: 3   LRRGKQVIRRSNLLAKQVISIHSALNLGFVSQIWVDIASWMVLVVEVRPNLLSGESERLL 62

Query: 170 LEDICQV 176
           LED+ +V
Sbjct: 63  LEDVRRV 69

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827441|ref|XP_002881603.1| hypothetical protein ARALYDRAFT_482866 [Arabidopsis lyrata subsp. lyrata] gi|297327442|gb|EFH57862.1| hypothetical protein ARALYDRAFT_482866 [Arabidopsis lyrata subsp. lyrata]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 108/191 (56%), Gaps = 24/191 (12%)

Query: 10  MSECISSIPLSNSVPVTKIRTLS----GSKWRPK--NGSVRNGNLQYAMCTFKPPSKNQE 63
           M  C SS  +S ++PV   R +       +WR +    S+ N + + A C F   S N  
Sbjct: 1   MCNCSSSF-VSLALPVLNARLVKPNSVNCRWRLRRIQHSILNCSWRRAQCYFD--SNNSA 57

Query: 64  LFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKL-----------RR 112
              +   +  F ++S+   + E  +V  +  E +     G S  ++L           + 
Sbjct: 58  FLGQSSNRIVFCLSSSSLPNEE--DVVHQTVESDSAELPGESYLIRLVGDNDLTNTGSKG 115

Query: 113 GRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLED 172
            +Q M RSNL+AKQVISIQSA+SLGF+SQLWVDT+SW+VLVV+V+P+LLSGE ER LL+D
Sbjct: 116 FKQTMTRSNLVAKQVISIQSALSLGFISQLWVDTSSWLVLVVDVKPSLLSGEYERFLLKD 175

Query: 173 ICQVFFFICVV 183
           I +V   +C+V
Sbjct: 176 IVRV--LLCLV 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2064184	328	AT2G38570 "AT2G38570" [Arabido	0.335	0.198	0.727	5.7e-20

TAIR|locus:2064184 AT2G38570 "AT2G38570" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/66 (72%), Positives = 58/66 (87%)

Query:   112 RG-RQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
             RG +Q   RSNL+AKQV+SIQSA+SLGF+SQLWVDTTSW+VLVV+V+P+LLSGE ER LL
Sbjct:   112 RGFKQSTTRSNLVAKQVVSIQSALSLGFISQLWVDTTSWLVLVVDVKPSLLSGESERFLL 171

Query:   171 EDICQV 176
              DI +V
Sbjct:   172 TDIVRV 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       171   0.00090  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  160 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.37u 0.18s 13.55t   Elapsed:  00:00:00
  Total cpu time:  13.37u 0.18s 13.55t   Elapsed:  00:00:00
  Start:  Fri May 10 17:13:06 2013   End:  Fri May 10 17:13:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037506001	SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (393 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035621001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (96 aa)			•						0.501
	GSVIVG00033655001	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (159 aa)			•						0.501
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•						0.501
	GSVIVG00026057001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (168 aa)			•						0.500
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•						0.498
	GSVIVG00013203001	SubName- Full=Chromosome undetermined scaffold_3599, whole genome shotgun sequence; (288 aa)			•						0.498
	GSVIVG00026487001	Chromosome chr12 scaffold_38, whole genome shotgun sequence (154 aa)			•						0.497
	GSVIVG00024757001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (109 aa)			•						0.496
	GSVIVG00022743001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (276 aa)			•						0.496
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•						0.496

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
TIGR02888	76	spore_YlmC_YmxH sporulation protein, YlmC/YmxH fam	99.86
COG1873	87	Protein implicated in RNA metabolism, contains PRC	99.47
PF05239	79	PRC: PRC-barrel domain; InterPro: IPR007903 The PR	99.29
COG3881	176	PRC-barrel domain containing protein [General func	98.19
COG3881	176	PRC-barrel domain containing protein [General func	97.67
cd00226	246	PRCH Photosynthetic reaction center (RC) complex,	94.24

>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family

Probab=99.86  E-value=3.3e-22  Score=146.66  Aligned_cols=67  Identities=24%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             EecccccceeEeccCCceeeee--eeEEEECCCCEEEEEEECCC-----CCCCCCe-EEeccCcceec-eEEEEec
Q 029364          118 RRSNLLAKQVISIQSAMSLGFV--SQLWVDTTSWVVLVVEVRPN-----LLSGEPE-RLLLEDICQVF-FFICVVY  184 (194)
Q Consensus       118 KrSdL~~KEVINi~dG~RLG~I--sDL~VD~~sG~V~AIiV~~~-----~f~ge~e-~IpWe~I~KIG-DVILVe~  184 (194)
                      |+|||++|||||++||+|||+|  .|+++|+++|+|.||++|++     ||+++.+ .|||++|+||| |+|||+.
T Consensus         1 r~seL~~keVIni~~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~~~~~~~~~~~~~~~Ipw~~I~kIG~DvIlV~~   76 (76)
T TIGR02888         1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGKGKKFGLFSKGEEIEIPWDAIKKIGSDVILVDV   76 (76)
T ss_pred             CHHHccCCCEEECCCCcEeeccccceEEEECCCCEEEEEEEeCCCcEEEeecCCcEEEEEhhhccEECCCEEEEeC
Confidence            5799999999999999999999  89999999999999999873     5555555 49999999999 9999984

Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.

>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]

Probab=99.47  E-value=1e-13  Score=103.98  Aligned_cols=69  Identities=26%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             ceEEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC---CC--CCCCe-EEeccCcceeceEEEEec
Q 029364          115 QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN---LL--SGEPE-RLLLEDICQVFFFICVVY  184 (194)
Q Consensus       115 qmmKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~---~f--~ge~e-~IpWe~I~KIGDVILVe~  184 (194)
                      .||++|+|.+|+|+|. +|++||.|.|+.+|.++|+|.++.|.++   +|  +++.. .|||+.|++|||.|++..
T Consensus         4 ~~~~~s~l~gk~V~~~-~G~~vG~V~dv~ld~~~g~i~~l~v~~~~~~l~~~~k~~~v~IP~~~V~aIGd~III~~   78 (87)
T COG1873           4 EMMRLSELLGKEVITN-DGKYVGTVSDVVLDIKEGKITGLLVIPTNKGLFLFGKGKEVIVPYEYVKAIGDIIIIKD   78 (87)
T ss_pred             hhheHHHhcCcEEEcC-CCeEEEEEEeEEEEccCCcEEEEEEecCCccccccCCCcEEEEehhHeEEecCEEEEec
Confidence            4789999999999999 9999999999999999999999999754   44  33324 499999999996666653

>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria

Probab=99.29  E-value=4.6e-12  Score=88.33  Aligned_cols=71  Identities=20%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             ceEEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC-CCC--CCCeEEeccCcceec-eEEEEecCC
Q 029364          115 QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLS--GEPERLLLEDICQVF-FFICVVYFP  186 (194)
Q Consensus       115 qmmKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~-~f~--ge~e~IpWe~I~KIG-DVILVe~~~  186 (194)
                      .+++.|||.+++|+|.+ |+++|.|.|+.+|+.+|+|.++++..+ +|+  ++...+||+++.++| |.|+|+...
T Consensus         2 ~~~~~s~l~g~~V~~~~-G~~iG~V~di~id~~~~~i~~i~v~~~~~~~~~~~~~~iP~~~~v~~~~~~i~v~~~~   76 (79)
T PF05239_consen    2 DEFRLSELIGKEVIDRD-GEKIGKVKDIVIDPKTGKIVGIVVSSGGFFGIGGKKVLIPWDQIVDIGGDRIIVDPPK   76 (79)
T ss_dssp             CHGCHHHHTTSEEEETT-SCEEEEEEEEEEETTTTEEEEEEEEETTSTCSSSEEEEEEGGEEEEECTTEEEESSST
T ss_pred             CeEEhHHccCCEEEcCC-CCEEEEEEEEEEeCCCCCEEEEEEcCCCccCcCCcEEEEcCeEeEEecCCEEEEcCCC
Confidence            46889999999999998 999999999999999999999999876 333  344569999888888 999998754

PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....

>COG3881 PRC-barrel domain containing protein [General function prediction only]

Probab=98.19  E-value=4.9e-06  Score=70.35  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             ccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCC---CCCeEEeccCcceec-eEEEEecCCccccc
Q 029364          121 NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLS---GEPERLLLEDICQVF-FFICVVYFPVHDMV  191 (194)
Q Consensus       121 dL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~---ge~e~IpWe~I~KIG-DVILVe~~~v~~~~  191 (194)
                      ++++.++++-++|.+||.|.|+.+|.++|+|+|.++..+||+   +....|+=.+-+++| |.++|..+..+.|+
T Consensus        85 e~m~mk~~lt~dG~iLGmveDVyFdek~gkIvgyevS~GffADlt~gRkiira~~~v~vgKD~~ivs~~~~~~~~  159 (176)
T COG3881          85 EIMNMKVILTYDGTILGMVEDVYFDEKTGKIVGYEVSRGFFADLTSGRKIIRAGNYVLVGKDLFIVSNDKNLSFV  159 (176)
T ss_pred             HhhcCceEeccCCcEeeeeeEEEEeccCCcEEEEEecCchhhhccCCceEEECCCcEEecccEEEecCCcchhhh
Confidence            466778888999999999999999999999999999999995   345678899999999 99999998887765

>COG3881 PRC-barrel domain containing protein [General function prediction only]

Probab=97.67  E-value=0.0001  Score=62.51  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             eEEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC-CCCCCCeEEeccCcceec-eEEEEecCC
Q 029364          116 VMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLSGEPERLLLEDICQVF-FFICVVYFP  186 (194)
Q Consensus       116 mmKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~-~f~ge~e~IpWe~I~KIG-DVILVe~~~  186 (194)
                      |++--+|.+.+|++..||.+||.|.|+-+|.+.++|.++.+..+ +| ..-.++|..+|.-|| |.|+...+.
T Consensus         1 Mit~~EleG~pVys~~tg~~lg~V~Dvif~~~gdrvl~flvnkggwf-h~h~~lp~~~i~Sig~k~Imi~vp~   72 (176)
T COG3881           1 MITSRELEGAPVYSTKTGEKLGAVDDVIFNFSGDRVLGFLVNKGGWF-HKHCCLPVKNIVSIGSKMIMIYVPY   72 (176)
T ss_pred             CccchhhcCCceEEecccccccceeeEEEecCCCeEEEEEEecCcEE-eeeeeeeecceeeeccceEEEeccc
Confidence            56677999999999999999999999999999999999999665 54 456679999999999 999987654

>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase

Probab=94.24  E-value=0.18  Score=45.01  Aligned_cols=61  Identities=21%  Similarity=0.186  Sum_probs=49.5

Q ss_pred             cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCcceec-eEEEEe
Q 029364          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVF-FFICVV  183 (194)
Q Consensus       120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I~KIG-DVILVe  183 (194)
                      .|+++..|+.. ||+.+|.|+|+|+|-.+|.|.-++|..+. ++++-.|| -.+.+|- +.|.|+
T Consensus       146 ~DprGl~V~g~-DGevvGtV~Dv~vD~~e~~iRYLeVdtg~-~gkkVLLP-i~~~rId~~~V~V~  207 (246)
T cd00226         146 VDPRGLPVVGA-DGEVAGKVTDLWVDRPEQLFRYLEVELAG-GGRTVLLP-MGFAKVKSDRVKVT  207 (246)
T ss_pred             CCCCCCEeEcC-CCcEeEEEEEEEEcCCcceEEEEEEEcCC-CCCEEEEE-eEEEEecCCEEEEe
Confidence            58999999998 99999999999999999999999997654 35555677 4445666 777776

Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1pm3_A	97	MTH1895; unknown function, structural genomics, PS	99.73
3htr_A	120	Uncharacterized PRC-barrel domain protein; beta-ba	99.11
1eys_H	259	Photosynthetic reaction center; membrane protein c	96.84
1rzh_H	260	Reaction center protein H chain; bacterial photosy	96.02
2wjn_H	258	Reaction center protein H chain; bacteriochlorophy	95.76

>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2

Probab=99.73  E-value=6.2e-18  Score=126.00  Aligned_cols=78  Identities=18%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             cccccccccceEEe-cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC----CCCC-C-CeEEeccCcceec-
Q 029364          106 EKVKLRRGRQVMRR-SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN----LLSG-E-PERLLLEDICQVF-  177 (194)
Q Consensus       106 ~~~~~~~~~qmmKr-SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~----~f~g-e-~e~IpWe~I~KIG-  177 (194)
                      -+.|+.+...||++ |+|.+|+||| .+|++||.|.|+++|+++|+|.+++++.+    +|+. + ...|||++|++|| 
T Consensus        10 ~~~~~~~~~~~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~g~~~~~~~IPw~~V~~IG~   88 (97)
T 1pm3_A           10 HSSGLVPRGSHMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGD   88 (97)
T ss_dssp             ----------CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESS
T ss_pred             ccCCCCCCCeEEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEEcCCCeeccccCCCeeEEEEhhHheEECC
Confidence            45678888999999 9999999999 99999999999999999999999999765    3553 3 3359999999999 


Q ss_pred             eEEEEec
Q 029364          178 FFICVVY  184 (194)
Q Consensus       178 DVILVe~  184 (194)
                      |+||++.
T Consensus        89 dvIi~~~   95 (97)
T 1pm3_A           89 KILLKGP   95 (97)
T ss_dssp             SEEECCT
T ss_pred             EEEEEec
Confidence            8887764

>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}

Probab=99.11  E-value=8.1e-11  Score=90.11  Aligned_cols=72  Identities=11%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             cccccceEEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCC-CCC-CCCe-EEeccCcceec---eEEEEe
Q 029364          110 LRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLS-GEPE-RLLLEDICQVF---FFICVV  183 (194)
Q Consensus       110 ~~~~~qmmKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~-~f~-ge~e-~IpWe~I~KIG---DVILVe  183 (194)
                      ......||+.|+|.+++|+|. +|++||.|.|++||..+|+|.+++|..+ ||+ ++.. .|||+.|+ +.   +.+.|+
T Consensus         8 ~~~~~~l~~~~~l~G~~V~~~-dG~~iG~V~dv~iD~~~G~i~~~vv~~GgflG~g~~~v~ip~~~l~-~~~~~~~~~v~   85 (120)
T 3htr_A            8 TNETLKLIGSDKVQGTAVYGP-DGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWPALK-YNVELGGYQVM   85 (120)
T ss_dssp             CCBCSSEEEHHHHTTCEEECT-TSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGGGCE-EETTTTEEECC
T ss_pred             ccCCcceEehhhccCCEEEcC-CCCEEEEEEEEEEECCCCcEEEEEEECCCccCcCCEEEEeCHHHeE-EecCCCEEEeC
Confidence            456678999999999999999 9999999999999999999999999754 886 4544 49999995 43   455443

>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1

Probab=96.84  E-value=0.0017  Score=56.59  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEe--ccCcceeceEEEE
Q 029364          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLL--LEDICQVFFFICV  182 (194)
Q Consensus       120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~Ip--We~I~KIGDVILV  182 (194)
                      ++|.+..|.+. ||.++|.|.|++||..+|+|.-++|.-+ |+++...||  |.+|..-.+-|-|
T Consensus       149 ~dl~G~~Vya~-DGekIG~V~Dv~vD~~sG~VrYlVVdtG-~ggkkVLiPi~~~~Id~d~~~V~V  211 (259)
T 1eys_H          149 PDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVA-ANKKKVLLPIGFSRFDKKARKVKV  211 (259)
T ss_dssp             CCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEET-TTCCEEEEEGGGCEEEGGGTEEEC
T ss_pred             CCCcCCEEEeC-CCCeeEEEEEEEEECCCCeEEEEEEEcC-CCCCcEEEecChhhccccCCEEEE
Confidence            67889999998 9999999999999999999999999777 555555566  5555543344555

>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...

Probab=96.02  E-value=0.013  Score=51.25  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             ecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCcceec-eEEEE
Q 029364          119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVF-FFICV  182 (194)
Q Consensus       119 rSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I~KIG-DVILV  182 (194)
                      -.++++..|... ||.++|.|.|+|||-.+|+|.-++|--+  +++...|||.-. +|- +-|-|
T Consensus       145 ~~d~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtG--ggrkVLLP~~~~-riD~~~VyV  205 (260)
T 1rzh_H          145 GKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMV-KVQSNRVHV  205 (260)
T ss_dssp             SCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGC-EECSSCEEE
T ss_pred             CCCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEeC--CCCEEEeeeEEE-EEcCCeEEE
Confidence            457889999998 9999999999999999999999999766  345555898643 333 44444

>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*

Probab=95.76  E-value=0.013  Score=51.21  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCc
Q 029364          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDI  173 (194)
Q Consensus       120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I  173 (194)
                      .|+++..|... ||.++|.|.|+|||-.+|+|.-++|--+. +++...|||.-.
T Consensus       150 ~D~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtGg-ggrkVLLP~~~~  201 (258)
T 2wjn_H          150 VDPRGLPVVAA-DGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFC  201 (258)
T ss_dssp             CCCTTCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGC
T ss_pred             CCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEcCC-CCCEEEeeeEEE
Confidence            57889999988 99999999999999999999999996543 344445898643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1pm3a_	78	MTH1895 {Archaeon Methanobacterium thermoautotroph	98.87
d1rzhh1	213	Photosynthetic reaction centre {Rhodobacter sphaer	96.85
d1eysh1	201	Photosynthetic reaction centre {Thermochromatium t	96.57
d2i5nh1	222	Photosynthetic reaction centre {Rhodopseudomonas v	96.56
d2f1la1	75	16S rRNA processing protein RimM, C-terminal domai	84.98

>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: MTH1895
domain: MTH1895
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.87  E-value=2.5e-09  Score=77.48  Aligned_cols=70  Identities=17%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             eEEecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEEC-CCCC-----CCCCeEEeccCcceeceEEEEecCC
Q 029364          116 VMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVR-PNLL-----SGEPERLLLEDICQVFFFICVVYFP  186 (194)
Q Consensus       116 mmKrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~-~~~f-----~ge~e~IpWe~I~KIGDVILVe~~~  186 (194)
                      |-.+.||.+|+|++- +++-+|.|.|+++|+++|.|.++++. +++.     .+....+|.+++++|||.||+..++
T Consensus         2 mRi~~dliGk~VlD~-~A~~IGkV~DvEiD~esg~vtsLiI~k~Gis~~igl~~~e~~Vp~e~V~~IGD~VlL~~~~   77 (78)
T d1pm3a_           2 MRIVEEMVGKEVLDS-SAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGDKILLKGPE   77 (78)
T ss_dssp             EETTTTSSSCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESSSEEECCTT
T ss_pred             cchHHhHhCchhccc-ccceeeeeeeEEEcCCCCeeEEEEEcCcccchhhcccCCeEEcCHHHHhhhccEEEEeCCC
Confidence            456789999999995 89999999999999999999999994 4432     3445679999999999999987653

>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.85  E-value=0.0013  Score=53.91  Aligned_cols=62  Identities=21%  Similarity=0.230  Sum_probs=51.2

Q ss_pred             EecccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCcceec-eEEEEe
Q 029364          118 RRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVF-FFICVV  183 (194)
Q Consensus       118 KrSdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I~KIG-DVILVe  183 (194)
                      +=.|+++..|+.. ||.++|.|.|+|||-.+|.|.-++|.-+  +++...+||... +|. |-+.|+
T Consensus       109 ~~~DprG~~V~~~-DG~kIGtV~DvwvD~~e~~vRYleV~tg--ggk~vLvP~~~a-~i~~d~V~V~  171 (213)
T d1rzhh1         109 AGKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMV-KVQSNRVHVN  171 (213)
T ss_dssp             ESCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGC-EECSSCEEES
T ss_pred             cCCCccCCeeEcC-CCCcceEEEEEEEECCCCcEEEEEEEeC--CCcEEEechhhe-EecCCeEEEc
Confidence            3459999999995 9999999999999999999999999755  244556898654 567 888885

>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Thermochromatium tepidum [TaxId: 1050]

Probab=96.57  E-value=0.0021  Score=52.07  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=50.0

Q ss_pred             cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCcceec---eEEEEe
Q 029364          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVF---FFICVV  183 (194)
Q Consensus       120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I~KIG---DVILVe  183 (194)
                      .|+++..|+.. ||+++|.|.|+|||-.+|+|.-++|.-++ +++...+||. +.+|.   +.|.|+
T Consensus        91 ~DprG~~V~~~-DG~~vGtV~Dv~vD~~e~~vRYleVdtg~-ggk~vLvP~~-~a~id~~~~~V~V~  154 (201)
T d1eysh1          91 PDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVAA-NKKKVLLPIG-FSRFDKKARKVKVD  154 (201)
T ss_dssp             CCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEETT-TCCEEEEEGG-GCEEEGGGTEEECS
T ss_pred             CCcccCeeEcC-CCCEEEEEEEEEEECCCCcEEEEEEEecC-CCcEEEEeee-eeEecCCCCEEEEe
Confidence            59999999998 99999999999999999999999997664 3444558985 66675   456665

>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=96.56  E-value=0.0014  Score=53.92  Aligned_cols=61  Identities=21%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccCcceec-eEEEEe
Q 029364          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVF-FFICVV  183 (194)
Q Consensus       120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~I~KIG-DVILVe  183 (194)
                      .|+++..|+. .||.++|.|+|+|||-.+|.|.-++|.-++ +++...+||... +|. |-+.|+
T Consensus       114 ~DprG~~V~g-~DGekIGtV~DvwVD~~e~~vRYleVetg~-ggk~vLvP~~~a-~i~~d~v~V~  175 (222)
T d2i5nh1         114 VDPRGLPVVA-ADGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFC-DVKKDKIVVT  175 (222)
T ss_dssp             CCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGC-EECSSCEECC
T ss_pred             CCcccCeeEc-CCCCeeeEEEEEEEeCCCCeEEEEEEEeCC-CCceEeeehhhc-eecCCcEEEc
Confidence            4999999998 599999999999999999999999997664 344456888754 555 777765

>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: RimM C-terminal domain-like
domain: 16S rRNA processing protein RimM, C-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.98  E-value=1.1  Score=29.49  Aligned_cols=51  Identities=24%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             cccccceeEeccCCceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccC
Q 029364          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLED  172 (194)
Q Consensus       120 SdL~~KEVINi~dG~RLG~IsDL~VD~~sG~V~AIiV~~~~f~ge~e~IpWe~  172 (194)
                      .||.+-+|+|.. |+.||.|.++ .|.-.+.+..|..+.+-.+++.-.||+.+
T Consensus         4 ~dLiG~~V~d~~-g~~lG~V~~v-~~~ga~dll~I~~~~~~~~~keiLIP~v~   54 (75)
T d2f1la1           4 HQLEGLKVIDQG-RQLLGVIDHL-LETGANDVMVVKPCAGSLDDRERLLPYTG   54 (75)
T ss_dssp             HHHTTCEEEETT-SCEEEEEEEE-ECCSSSCEEEEECCTTSSSSCCEEEECST
T ss_pred             HHcCCCEEEeCC-CCEEEEEEEE-cccCCccEEEEEeCCCCCCCeEEEEEcCc
Confidence            589999999975 9999999997 46667888887776554444555688643