Citrus Sinensis ID: 029365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MSLSSITGSRQSSTLPLSRLSWQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHcccccccccccccEEEEEccHHHHHEEHHccccccccccHHHHHcccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mslssitgsrqsstlplsrLSWQTLKAassrrhviSCSSTALVAILTFncglaplpvqaedmsngqdekeEGVVGAIKslfdpnektksgkvlpKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWrgqktvageeSYVELEKAIRSLASFYskagpsaplpgevkSEILNDLDTAEKFL
Flexible Loop (DISEMBL)
mslssitgsrqsstlplsrLSWQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKslfdpnektksgkvlpkaylKSARELVKTLreslkedpkdianfrrnadsakeSIRDylsnwrgqktvageesYVELEKAIRSLASFYSKAgpsaplpgevkseILNDLDTAEKFL
Low Complexity Region (SEG)
MSLSSITGSRQSSTLPLSRLSWQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Disordered region (IsUnstruct)
*********************WQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPV******************************************************************************YLSNWRGQKTVAGEESYVELEKAIRSLASF*****************************
Disordered Region (DISOPRED)
**********************************ISCSSTALVAILTFNCGLAPLP****************VVGAIKSLFD**********L*KAYLKSARELVKTLRESL******************ESIRDYL****************ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Disordered Region (DISEMBL)
***************PLSRLSWQ**********VISCSSTALVAILTFNCGLAPLPVQAE***********GVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Disordered Region (DISPRO)
*******************L*WQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMS*******EGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLSSITGSRQSSTLPLSRLSWQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDxxxxxxxxxxxxxxxxxxxxxWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
P74367	134	Photosystem II 11 kDa pro	N/A	no	0.525	0.761	0.298	3e-07
Q9LR64	174	Thylakoid lumenal protein	no	no	0.484	0.540	0.277	3e-06

>sp|P74367|PS11_SYNY3 Photosystem II 11 kDa protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1645 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct: 27  SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85

Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 192
            +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 86  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9LR64|Y1360_ARATH Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis thaliana GN=At1g03600 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 97  YLKSARELVKTLRESL---KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 153
           Y+K    ++  +R +L   K DP    N        +E+   +++ +R +K + G+ S+ 
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTDP----NVADAVAELREASNSWVAKYRKEKALLGKASFR 129

Query: 154 ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           ++  A+ +++  Y   GP+AP+P + K+ IL +++TAEK L
Sbjct: 130 DIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
225432660	209	PREDICTED: uncharacterized protein LOC10	0.855	0.794	0.795	2e-68
147790522	230	hypothetical protein VITISV_022066 [Viti	0.855	0.721	0.705	1e-64
359477522	235	PREDICTED: uncharacterized protein LOC10	0.855	0.706	0.687	2e-64
255552187	204	conserved hypothetical protein [Ricinus	0.840	0.799	0.745	3e-64
224102063	204	predicted protein [Populus trichocarpa]	0.835	0.794	0.708	7e-60
388498828	208	unknown [Lotus japonicus]	0.896	0.836	0.662	1e-56
356526109	207	PREDICTED: uncharacterized protein LOC10	0.907	0.850	0.639	2e-55
449444118	206	PREDICTED: uncharacterized protein LOC10	0.840	0.791	0.701	2e-55
18390518	199	LOW PSII accumulation 19 protein [Arabid	0.809	0.788	0.686	2e-54
26451618	199	unknown protein [Arabidopsis thaliana]	0.809	0.788	0.680	3e-54

>gi|225432660|ref|XP_002282406.1| PREDICTED: uncharacterized protein LOC100259756 isoform 1 [Vitis vinifera] gi|297737050|emb|CBI26251.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 146/166 (87%)

Query: 29  SSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTK 88
           SSRRHV+  S  +LVAILTFN G  PLPV AED SNGQ++ E+GVVGAIKSLFDPNEK K
Sbjct: 44  SSRRHVLVGSGASLVAILTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIK 103

Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SGKVLPKAYL SARE+VKTLRESLKEDPKDIA FRR AD+AKESIR+YLS+WRG++TV  
Sbjct: 104 SGKVLPKAYLNSAREVVKTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVS 163

Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           EESY  LEKAIRSLASFYSKAGPSA LP EVKSEIL+DL+TAE+FL
Sbjct: 164 EESYAMLEKAIRSLASFYSKAGPSAALPEEVKSEILDDLNTAEEFL 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790522|emb|CAN69770.1| hypothetical protein VITISV_022066 [Vitis vinifera]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 146/187 (78%), Gaps = 21/187 (11%)

Query: 29  SSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTK 88
           SSRRHV+  S  +LVAILTFN G  PLPV AED SNGQ++ E+GVVGAIKSLFDPNEK K
Sbjct: 44  SSRRHVLVGSGASLVAILTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIK 103

Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SGKVLPKAYL SARE+VKTLRESLKEDPKDIA FRR AD+AKESIR+YLS+WRG++TV  
Sbjct: 104 SGKVLPKAYLNSAREVVKTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVS 163

Query: 149 E---------------------ESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDL 187
           E                     ESY  LEKAIRSLASFYSKAGPSA LP EVKSEIL+DL
Sbjct: 164 EVCILQKHFWFLRWIPVVTVXHESYAMLEKAIRSLASFYSKAGPSAALPEEVKSEILDDL 223

Query: 188 DTAEKFL 194
           +TAE+FL
Sbjct: 224 NTAEEFL 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477522|ref|XP_003631991.1| PREDICTED: uncharacterized protein LOC100259756 isoform 2 [Vitis vinifera]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 146/192 (76%), Gaps = 26/192 (13%)

Query: 29  SSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTK 88
           SSRRHV+  S  +LVAILTFN G  PLPV AED SNGQ++ E+GVVGAIKSLFDPNEK K
Sbjct: 44  SSRRHVLVGSGASLVAILTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIK 103

Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTV-- 146
           SGKVLPKAYL SARE+VKTLRESLKEDPKDIA FRR AD+AKESIR+YLS+WRG++TV  
Sbjct: 104 SGKVLPKAYLNSAREVVKTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVS 163

Query: 147 ------------------------AGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSE 182
                                     EESY  LEKAIRSLASFYSKAGPSA LP EVKSE
Sbjct: 164 EYKGSLQLSSTAYHTRTEHFAERLGNEESYAMLEKAIRSLASFYSKAGPSAALPEEVKSE 223

Query: 183 ILNDLDTAEKFL 194
           IL+DL+TAE+FL
Sbjct: 224 ILDDLNTAEEFL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552187|ref|XP_002517138.1| conserved hypothetical protein [Ricinus communis] gi|223543773|gb|EEF45301.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 142/165 (86%), Gaps = 2/165 (1%)

Query: 30  SRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKS 89
           SRRH++ CS++ L  IL  NC   PLPV+AED SN Q+EK+ GV+G IKSLFDPNEKTKS
Sbjct: 42  SRRHILLCSASFLT-ILNLNCISTPLPVRAEDESNAQEEKD-GVIGTIKSLFDPNEKTKS 99

Query: 90  GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGE 149
           GK+LPKAYLKSAR++VKTLR+SLKEDPKD+  FRR AD+AKESIR+YL +WRGQ+ V  E
Sbjct: 100 GKLLPKAYLKSARDVVKTLRDSLKEDPKDVTQFRRTADAAKESIREYLGSWRGQEKVVRE 159

Query: 150 ESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           ESY+ELEKAIRSLASFYSKAGPSAPLP EVKSEILNDL  AE+FL
Sbjct: 160 ESYIELEKAIRSLASFYSKAGPSAPLPEEVKSEILNDLSAAEEFL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102063|ref|XP_002312530.1| predicted protein [Populus trichocarpa] gi|118485936|gb|ABK94813.1| unknown [Populus trichocarpa] gi|222852350|gb|EEE89897.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 119/168 (70%), Positives = 140/168 (83%), Gaps = 6/168 (3%)

Query: 27  AASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEK 86
           A  SRRHV+  S++  V +LT NC L PL  +A+     ++EK++GV GAIKSLFDPNEK
Sbjct: 43  ALPSRRHVLVFSAS-FVTVLTLNCFLTPLQARAK-----EEEKDDGVAGAIKSLFDPNEK 96

Query: 87  TKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTV 146
           TKSGK+LPKAYLK+ARE+VK LRESLKED KDIA FRR AD+AKESIR+YL +WRGQ+ V
Sbjct: 97  TKSGKLLPKAYLKAAREVVKNLRESLKEDTKDIAKFRRTADAAKESIREYLGSWRGQEKV 156

Query: 147 AGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
             EESYVELEKAIRSLASFYS+AGPSA LP EV+SEILNDL+TAE+FL
Sbjct: 157 VREESYVELEKAIRSLASFYSRAGPSAQLPEEVRSEILNDLNTAEEFL 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498828|gb|AFK37480.1| unknown [Lotus japonicus]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/178 (66%), Positives = 141/178 (79%), Gaps = 4/178 (2%)

Query: 18  SRLSWQTLKAASSRRHVISCSSTALVAILTFNCG-LAPLPVQAEDMSNGQDEKEEGVVGA 76
           S ++   L+A+SSRRH++    T+LV   T  CG L+PL   AE+ S  +++ ++GVVGA
Sbjct: 34  SNIALPPLEASSSRRHLLLSVGTSLV---TMTCGGLSPLMASAEENSADKEDDDKGVVGA 90

Query: 77  IKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDY 136
           IKSLFDPNEK+KSGKVLPKAYLKSARE+VKTLRESL E P D A FRR AD+AKESIRDY
Sbjct: 91  IKSLFDPNEKSKSGKVLPKAYLKSAREVVKTLRESLNEVPDDNAKFRRTADAAKESIRDY 150

Query: 137 LSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           L  WRG + VA EESY  LEKAIRSLA FYS+AGPSAPLP EVK+EIL+ L+TAE+FL
Sbjct: 151 LGGWRGNQDVAQEESYDMLEKAIRSLAKFYSRAGPSAPLPEEVKTEILDYLNTAEEFL 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526109|ref|XP_003531662.1| PREDICTED: uncharacterized protein LOC100805317 [Glycine max]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 143/186 (76%), Gaps = 10/186 (5%)

Query: 9   SRQSSTLPLSRLSWQTLKAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDE 68
           SR +  LP S       +A+SSRRH++     +L   LT  CGL+P  V AE+ S  ++E
Sbjct: 32  SRSNIALPPS-------EASSSRRHLLIGVGPSL---LTLTCGLSPPTVWAEEKSGDKEE 81

Query: 69  KEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADS 128
           +++GV+GAIKSLFDPNEKTKSGKVLPKAYL+SARE+VKTLRESL E   D A FRR ADS
Sbjct: 82  EDKGVIGAIKSLFDPNEKTKSGKVLPKAYLRSAREVVKTLRESLNEGTDDNAKFRRTADS 141

Query: 129 AKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLD 188
           AKESIR+YL +WRG + VA EESYV LEK IRSLA++YSKAGPSAPL  EVKSEIL+ L+
Sbjct: 142 AKESIREYLGSWRGNQIVAQEESYVILEKVIRSLANYYSKAGPSAPLSHEVKSEILDYLN 201

Query: 189 TAEKFL 194
           TAE+FL
Sbjct: 202 TAEEFL 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444118|ref|XP_004139822.1| PREDICTED: uncharacterized protein LOC101211891 [Cucumis sativus] gi|449492573|ref|XP_004159036.1| PREDICTED: uncharacterized LOC101211891 [Cucumis sativus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 135/164 (82%), Gaps = 1/164 (0%)

Query: 31  RRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSG 90
           RRH++  +  +LV  LTFN GL P   QAE+M N  +E++ GV+G IKS+FDPNEKTKSG
Sbjct: 44  RRHLV-WNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSG 102

Query: 91  KVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEE 150
           K+LPKAYLKSARE+VKTLRESL+EDPKD A FRR AD+AKESIRDYLSNW G++TV  EE
Sbjct: 103 KILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEE 162

Query: 151 SYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           SYV LEKAIRSLA FY+KAGPSAPLP  VKS+IL+DLD  E+ L
Sbjct: 163 SYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390518|ref|NP_563737.1| LOW PSII accumulation 19 protein [Arabidopsis thaliana] gi|8778732|gb|AAF79740.1|AC005106_21 T25N20.4 [Arabidopsis thaliana] gi|13877959|gb|AAK44057.1|AF370242_1 unknown protein [Arabidopsis thaliana] gi|23296694|gb|AAN13149.1| unknown protein [Arabidopsis thaliana] gi|332189712|gb|AEE27833.1| LOW PSII accumulation 19 protein [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/166 (68%), Positives = 134/166 (80%), Gaps = 9/166 (5%)

Query: 31  RRHVISC--SSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTK 88
           RR  + C   +++ +A + F+ GL     QA+      DE E GVVGA K+LFDPNE+TK
Sbjct: 41  RRGFLKCVVGASSFMATIEFS-GL-----QAQASEEKLDEGE-GVVGAFKTLFDPNERTK 93

Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SGK LPKAYLKSARE+VKT+RESLKE+PKD A FRR+AD+AKESIRDYLSNWRGQKTVAG
Sbjct: 94  SGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAG 153

Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           EESYVELE  IR+LA FYSKAGPSAPLP EVK+EIL+DL+ AE+FL
Sbjct: 154 EESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451618|dbj|BAC42906.1| unknown protein [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 134/166 (80%), Gaps = 9/166 (5%)

Query: 31  RRHVISC--SSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTK 88
           RR  + C   +++ +A + F+ GL     QA+      DE E GVVGA K+LFDPNE+TK
Sbjct: 41  RRGFLKCVVGASSFMATIEFS-GL-----QAQASEEKLDEGE-GVVGAFKTLFDPNERTK 93

Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SGK LPKAYLKSARE+VKT+RESLKE+P+D A FRR+AD+AKESIRDYLSNWRGQKTVAG
Sbjct: 94  SGKELPKAYLKSAREVVKTMRESLKENPRDNAKFRRSADAAKESIRDYLSNWRGQKTVAG 153

Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           EESYVELE  IR+LA FYSKAGPSAPLP EVK+EIL+DL+ AE+FL
Sbjct: 154 EESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:505006101	199	LPA19 "AT1G05385" [Arabidopsis	0.809	0.788	0.686	1.2e-51
UNIPROTKB|P74367	134	slr1645 "Photosystem II 11 kDa	0.525	0.761	0.298	2.2e-09
TAIR|locus:2020788	174	PSB27 "AT1G03600" [Arabidopsis	0.5	0.557	0.265	5.9e-09

TAIR|locus:505006101 LPA19 "AT1G05385" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 114/166 (68%), Positives = 134/166 (80%)

Query:    31 RRHVISC--SSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTK 88
             RR  + C   +++ +A + F+ GL     QA+      DE E GVVGA K+LFDPNE+TK
Sbjct:    41 RRGFLKCVVGASSFMATIEFS-GL-----QAQASEEKLDEGE-GVVGAFKTLFDPNERTK 93

Query:    89 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
             SGK LPKAYLKSARE+VKT+RESLKE+PKD A FRR+AD+AKESIRDYLSNWRGQKTVAG
Sbjct:    94 SGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAG 153

Query:   149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
             EESYVELE  IR+LA FYSKAGPSAPLP EVK+EIL+DL+ AE+FL
Sbjct:   154 EESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

UNIPROTKB|P74367 slr1645 "Photosystem II 11 kDa protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/104 (29%), Positives = 58/104 (55%)

Query:    89 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
             SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct:    27 SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85

Query:   149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 192
              +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct:    86 LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128

GO:0030096 "plasma membrane-derived thylakoid photosystem II" evidence=IDA

TAIR|locus:2020788 PSB27 "AT1G03600" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/98 (26%), Positives = 54/98 (55%)

Query:    97 YLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 156
             Y+K    ++  +R +L     D  N        +E+   +++ +R +K + G+ S+ ++ 
Sbjct:    74 YIKDTSAVISKVRSTLSMQKTD-PNVADAVAELREASNSWVAKYRKEKALLGKASFRDIY 132

Query:   157 KAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
              A+ +++  Y   GP+AP+P + K+ IL +++TAEK L
Sbjct:   133 SALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.342    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       194   0.00076  111 3  11 23  0.41    33
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  146 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.37u 0.14s 21.51t   Elapsed:  00:00:01
  Total cpu time:  21.37u 0.14s 21.51t   Elapsed:  00:00:01
  Start:  Fri May 10 17:14:09 2013   End:  Fri May 10 17:14:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
PLN00061	150	PLN00061, PLN00061, photosystem II protein Psb27;	2e-82
pfam13326	110	pfam13326, PSII_Pbs27, Photosystem II Pbs27	3e-34
TIGR03044	135	TIGR03044, PS_II_psb27, photosystem II protein Psb	1e-09
PLN00064	166	PLN00064, PLN00064, photosystem II protein Psb27;	8e-08

>gnl|CDD|215043 PLN00061, PLN00061, photosystem II protein Psb27; Provisional

 Score =  240 bits (614), Expect = 2e-82
 Identities = 116/151 (76%), Positives = 128/151 (84%), Gaps = 2/151 (1%)

Query: 41  ALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKS 100
           +  A LT N  + PL  +AE+    + E+ EGVVGAIKSLFDPNEKTKSGK LPKAYLKS
Sbjct: 2   SFAASLTLNGQMTPLQARAEE--EAKVEEGEGVVGAIKSLFDPNEKTKSGKKLPKAYLKS 59

Query: 101 ARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIR 160
           ARE+VKTLRESLKEDPKD A FRR AD+AKESIR+YL NWRGQKTVA EESYVELEKAIR
Sbjct: 60  AREVVKTLRESLKEDPKDEAKFRRTADAAKESIREYLGNWRGQKTVAEEESYVELEKAIR 119

Query: 161 SLASFYSKAGPSAPLPGEVKSEILNDLDTAE 191
           SLASFYSKAGPSAPLP +VKSEIL+DL+ AE
Sbjct: 120 SLASFYSKAGPSAPLPEDVKSEILDDLNKAE 150

Length = 150

>gnl|CDD|205506 pfam13326, PSII_Pbs27, Photosystem II Pbs27

 Score =  116 bits (294), Expect = 3e-34
 Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 79  SLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLS 138
           ++  P  K      L   Y+K    +V+TLRE+L E PKD  N    A  A+E I DY+S
Sbjct: 3   AVAAPAAK------LTGDYVKDTLAVVETLRETL-ELPKDDPNRAEAAAEARELINDYVS 55

Query: 139 NWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
            +R   +VAG  S+  +  A+ SLA  YS  G   PLP ++K  +L +L  AEK L
Sbjct: 56  RYRRGPSVAGLASFTTMYTALNSLAGHYSSYGN-RPLPEKLKERLLKELKKAEKAL 110

This family of proteins contains Pbs27, a highly conserved component of photosystem II. Pbs27 is comprised of four helices arranged in a right handed up-down-up-down fold, with a less ordered region located at the N-terminus. Length = 110

>gnl|CDD|234098 TIGR03044, PS_II_psb27, photosystem II protein Psb27

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 104 LVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLA 163
           +++TLRE++   P D  N       A++ I DY+S +R +  V G  S+  ++ A+ SLA
Sbjct: 44  VIQTLREAIDL-PDDDPNKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLA 102

Query: 164 SFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
             Y K+  + PLP ++K  +  +L  AEK L
Sbjct: 103 GHY-KSYANRPLPEKLKERLEKELKKAEKAL 132

Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single family models, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences from Arabidopsis are not, at this time, assigned as functionally equivalent photosystem II proteins [Energy metabolism, Photosynthesis]. Length = 135

>gnl|CDD|215045 PLN00064, PLN00064, photosystem II protein Psb27; Provisional

 Score = 49.6 bits (118), Expect = 8e-08
 Identities = 27/98 (27%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 97  YLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 156
           Y+K  ++++  +R ++  D  D  N        +E+   +++ +R +K + G  S+ ++ 
Sbjct: 66  YVKETKDVIGKVRSTINMDKTD-PNVADAVAELRETSNSWVAKYRREKALLGRPSFRDMY 124

Query: 157 KAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
            A+ +++  Y   GP+AP+P + K+ IL ++DTAEK L
Sbjct: 125 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 162

Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PLN00061	150	photosystem II protein Psb27; Provisional	100.0
PLN00064	166	photosystem II protein Psb27; Provisional	100.0
PF13326	145	PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF	100.0
TIGR03044	135	PS_II_psb27 photosystem II protein Psb27. Members	100.0
PF10518	26	TAT_signal: TAT (twin-arginine translocation) path	85.33
PF07240	85	Turandot: Stress-inducible humoral factor Turandot	85.33

>PLN00061 photosystem II protein Psb27; Provisional

Probab=100.00  E-value=3.9e-64  Score=409.62  Aligned_cols=148  Identities=78%  Similarity=1.098  Sum_probs=143.5

Q ss_pred             HHHHHHhhcccCCcchhhhcccCCCcccccccccccccccCCCccccCCCCCchHHHHHHHHHHHHHHHHhcCCCCCchH
Q 029365           42 LVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIAN  121 (194)
Q Consensus        42 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~slfdp~~~~ksg~~LPkdY~~dT~~VV~tLReaL~ldp~D~~~  121 (194)
                      ++++++++|...|.++||++++  +.++++||+|+|+|||||||+||||+.||++|++||++||++||++|+++|+|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~a~~e~--~~~~~~~~~~~~~~~fdp~e~tksg~~Lpg~Y~kdtr~VV~tLresl~l~p~D~~~   80 (150)
T PLN00061          3 FAASLTLNGQMTPLQARAEEEA--KVEEGEGVVGAIKSLFDPNEKTKSGKKLPKAYLKSAREVVKTLRESLKEDPKDEAK   80 (150)
T ss_pred             HHHHHHHhcCCCCCcchHHHHh--cccccccHHHHHHHhcCccccccccccCchHHHHHHHHHHHHHHHHHccCCcchHH
Confidence            4678999999999999999996  57888899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHH
Q 029365          122 FRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAE  191 (194)
Q Consensus       122 ~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gp~rPLPeklK~RLlqEL~~AE  191 (194)
                      |++++++||++|||||++||+++.|+|++||+||+||||+|||||++|||||||||++|+||++||++||
T Consensus        81 ~~~aa~~Ake~IndYisryR~~~~V~gl~SfttMqtALnsLAghYssyGpnrPLPe~lK~Rll~EL~~AE  150 (150)
T PLN00061         81 FRRTADAAKESIREYLGNWRGQKTVAEEESYVELEKAIRSLASFYSKAGPSAPLPEDVKSEILDDLNKAE  150 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997

>PLN00064 photosystem II protein Psb27; Provisional

Probab=100.00  E-value=9.3e-45  Score=299.66  Aligned_cols=132  Identities=27%  Similarity=0.468  Sum_probs=117.1

Q ss_pred             hhhhhhhHHHhhhhhhHHHHHHhhcccCCcchhhhcccCCCcccccccccccccccCCCccccCCCCCchHHHHHHHHHH
Q 029365           26 KAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELV  105 (194)
Q Consensus        26 ~a~~srr~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~slfdp~~~~ksg~~LPkdY~~dT~~VV  105 (194)
                      +...+|||||+..+++    +.....+.+.|++|...                                ++|.+||.+||
T Consensus        31 ~~~~~rr~~~~~~~~~----~~~~~~~~~~~a~a~~~--------------------------------g~Y~~DT~aVi   74 (166)
T PLN00064         31 RNHLLRREFLSLATTI----LTSAALLPVAPAFAASD--------------------------------EEYVKETKDVI   74 (166)
T ss_pred             hhhhHHHHHHHHHHHH----HHHHHhccCcchhhccC--------------------------------CChHHHHHHHH
Confidence            4456999999876543    33344445566666333                                48999999999


Q ss_pred             HHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHH
Q 029365          106 KTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILN  185 (194)
Q Consensus       106 ~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gp~rPLPeklK~RLlq  185 (194)
                      ++||++|+| |+|+++++++++++|++|||||+||||+++|+|++||+|||||||+|||||++||||||||+|+|+||+|
T Consensus        75 ~~lr~tI~L-~~ddp~~a~a~aeaR~~iNdyvSrYRr~~~v~Gl~SFttMyTALNaLAGHY~SfgpnrPlPeKlK~RL~q  153 (166)
T PLN00064         75 GKVRSTINM-DKTDPNVADAVAELRETSNSWVAKYRREKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILE  153 (166)
T ss_pred             HHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHH
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 029365          186 DLDTAEKFL  194 (194)
Q Consensus       186 EL~~AE~aL  194 (194)
                      ||++||++|
T Consensus       154 E~~~AEkal  162 (166)
T PLN00064        154 EMDTAEKAL  162 (166)
T ss_pred             HHHHHHHHH
Confidence            999999986

>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A

Probab=100.00  E-value=6.3e-45  Score=294.24  Aligned_cols=145  Identities=41%  Similarity=0.562  Sum_probs=93.2

Q ss_pred             hhhHHHhhhhhhHHHHHHhhcccCCcchhhhcccCCCcccccccccccccccCCCccccCCCCCchHHHHHHHHHHHHHH
Q 029365           30 SRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLR  109 (194)
Q Consensus        30 srr~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~slfdp~~~~ksg~~LPkdY~~dT~~VV~tLR  109 (194)
                      ||||+|..++.+++++ ++.+...++.+++..+..+           +++. +||+      .|+++|++||++||++||
T Consensus         1 ~rr~~l~~~~~~~~al-~l~~~~~~l~~~~l~~c~~-----------~~s~-~~~~------~l~~~Y~~dt~~vv~~lr   61 (145)
T PF13326_consen    1 SRRRLLLAASSALLAL-TLSARGAALAVIALTACRA-----------AKSG-DPNA------GLTGDYVKDTRAVVKTLR   61 (145)
T ss_dssp             ---------------------------------S------------------S--S------S--S-CHHHHHHHHHHHH
T ss_pred             CcchhhhHHHHHHHHH-HHhhhhHHHHhhcchhhhh-----------cccC-Cccc------cccchHHHHHHHHHHHHH
Confidence            6999998877764443 4433344555555444221           4554 6665      455779999999999999


Q ss_pred             HHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHH
Q 029365          110 ESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT  189 (194)
Q Consensus       110 eaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gp~rPLPeklK~RLlqEL~~  189 (194)
                      ++|++ |+|++++++++++||++|||||++|||++.|+|++||++||+|||+|||||++|||++|||+|+|+||++||++
T Consensus        62 ~~l~l-~~d~~~~~~~~~~ar~~in~~vs~YRr~~~v~g~~Sf~~m~tAln~LaghY~s~g~raPlP~k~k~rll~el~~  140 (145)
T PF13326_consen   62 EALEL-DKDDPNRAEAAAEARELINDYVSRYRRGPSVSGLPSFTTMYTALNALAGHYSSYGNRAPLPEKLKERLLKELDQ  140 (145)
T ss_dssp             HHHCS--TT-TTHHHHHHHHHHHHHHHHCCCCCCHHCCTSHHHHHHHHHHHHHHHHCHHHTTS-S--HHHHHHHHHHHHH
T ss_pred             HHHcC-CCCCccHHHHHHHHHHHHHHHHHHhCCCCCcCCcchHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            99998 79999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             HHhcC
Q 029365          190 AEKFL  194 (194)
Q Consensus       190 AE~aL  194 (194)
                      ||++|
T Consensus       141 Ae~aL  145 (145)
T PF13326_consen  141 AEKAL  145 (145)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99986

>TIGR03044 PS_II_psb27 photosystem II protein Psb27

Probab=100.00  E-value=3.8e-44  Score=288.63  Aligned_cols=103  Identities=31%  Similarity=0.522  Sum_probs=99.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhc
Q 029365           90 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA  169 (194)
Q Consensus        90 g~~LPkdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~  169 (194)
                      .+.|+++|.+||++||++||++|++ |+|+|++++++++||++|||||++|||+++|+|++||+|||||||+|||||++|
T Consensus        30 ~~~Ltg~Y~~DT~~Vi~tlr~~i~l-pkd~p~~~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~TALNsLAGHY~sy  108 (135)
T TIGR03044        30 KTRLTGDYVEDTLAVIQTLREAIDL-PDDDPNKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLAGHYKSY  108 (135)
T ss_pred             cccccchHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHHHHHHHHHHhccC
Confidence            3568899999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHhcC
Q 029365          170 GPSAPLPGEVKSEILNDLDTAEKFL  194 (194)
Q Consensus       170 Gp~rPLPeklK~RLlqEL~~AE~aL  194 (194)
                      | |||||||+|+||+|||++||++|
T Consensus       109 ~-~rPlPeklk~Rl~~El~~AE~al  132 (135)
T TIGR03044       109 A-NRPLPEKLKERLEKELKKAEKAL  132 (135)
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            5 99999999999999999999986

Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.

>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []

Probab=85.33  E-value=0.83  Score=27.57  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=12.9

Q ss_pred             hhhhHHHhhhhhhHHHHHH
Q 029365           29 SSRRHVISCSSTALVAILT   47 (194)
Q Consensus        29 ~srr~~l~~~~~~~~~~~~   47 (194)
                      -|||+||..++++..+.++
T Consensus         2 ~sRR~fLk~~~a~~a~~~~   20 (26)
T PF10518_consen    2 LSRRQFLKGGAAAAAAAAL   20 (26)
T ss_pred             CcHHHHHHHHHHHHHHHHh
Confidence            4899999877765344433

Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].

>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins

Probab=85.33  E-value=2  Score=32.97  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHH
Q 029365          156 EKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT  189 (194)
Q Consensus       156 ~TALNsLAGhYss~Gp~rPLPeklK~RLlqEL~~  189 (194)
                      ..=+.+|-+||..|.|.-||++..|+++...+++
T Consensus         9 ~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~   42 (85)
T PF07240_consen    9 IRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRR   42 (85)
T ss_pred             HhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHH
Confidence            3447789999999999999999999999887765

The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
2kmf_A	115	Solution Structure Of Psb27 From Cyanobacterial Pho		3e-08
2knd_A	110	Psb27 Structure From Synechocystis Length = 110		4e-08

>pdb|2KMF|A Chain A, Solution Structure Of Psb27 From Cyanobacterial Photosystem Ii Length = 115

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct: 8   SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 66
Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 192
            +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 67  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 109

>pdb|2KND|A Chain A, Psb27 Structure From Synechocystis Length = 110

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 89  SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 148
           SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct: 3   SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 61
Query: 149 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 192
            +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 62  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
2kmf_A	115	Photosystem II 11 kDa protein; PSB27, structure, h	4e-32
2y6x_A	113	PSB27, photosystem II 11 KD protein; photosynthesi	8e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A Length = 115

 Score =  111 bits (278), Expect = 4e-32
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 83  PNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG 142
           P     SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R 
Sbjct: 2   PLGSCDSGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRR 60

Query: 143 QKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           +    G +S+  ++ A+ SLA +Y+  G   P+P ++K  +  +   AE+ +
Sbjct: 61  KGDAGGLKSFTTMQTALNSLAGYYTSYGA-RPIPEKLKKRLQLEFTQAERSI 111

>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus} Length = 113

 Score = 92.4 bits (229), Expect = 8e-25
 Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 93  LPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESY 152
           L   + +    L+ +LRE++   P++  N +     A++ + D+ + +R   ++    S+
Sbjct: 8   LTGNFREDTLALISSLREAI-ALPENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSF 66

Query: 153 VELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 194
           + ++ A+ SLA  YS + P+ PLP ++K+ +  +    E  L
Sbjct: 67  MTMQTALNSLAGHYS-SYPNRPLPEKLKARLEQEFKQVELAL 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 48/217 (22%)

Query: 1   MSLSSITGSRQSSTLP---------LSRL-SWQTLKAA-------SSRRHV----ISCS- 38
           +  +  + S  SS +          L RL   +  +          + +      +SC  
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 39  --STALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKA 96
             +T    +  F        +  +  S      E      +KSL       +    LP+ 
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE------VKSLLLKYLDCRPQD-LPRE 321

Query: 97  YLKSARELVKTLRESLKEDPKDIANFRR-NADSAKESIRDYLSNWRGQKTVAGEESYVEL 155
            L +    +  + ES+++      N++  N D     I         + ++   E   E 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---------ESSLNVLEPA-EY 371

Query: 156 EKAIRSLASFYSKAGP-SAPLPGEVKSEILNDLDTAE 191
            K    L+ F     P SA +P  + S I  D+  ++
Sbjct: 372 RKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2kmf_A	115	Photosystem II 11 kDa protein; PSB27, structure, h	100.0
2y6x_A	113	PSB27, photosystem II 11 KD protein; photosynthesi	100.0

>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A

Probab=100.00  E-value=3.7e-44  Score=280.74  Aligned_cols=104  Identities=30%  Similarity=0.566  Sum_probs=101.0

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhh
Q 029365           89 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSK  168 (194)
Q Consensus        89 sg~~LPkdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss  168 (194)
                      +.+.||++|++||++||++||++|++ |+|++++++++++||++|||||++|||++.|+|++||+|||||||+|||||++
T Consensus         8 ~~~~L~~~Y~~dT~~Vv~~lr~~l~l-~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s   86 (115)
T 2kmf_A            8 SGTGLTGNYSQDTLTVIATLREAIDL-PQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTS   86 (115)
T ss_dssp             CCSSCCSCHHHHHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCccHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhh
Confidence            35779999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHhcC
Q 029365          169 AGPSAPLPGEVKSEILNDLDTAEKFL  194 (194)
Q Consensus       169 ~Gp~rPLPeklK~RLlqEL~~AE~aL  194 (194)
                      || ++|||+|+|+||++||++||++|
T Consensus        87 ~g-~~PlPek~k~Rl~~el~~AE~al  111 (115)
T 2kmf_A           87 YG-ARPIPEKLKKRLQLEFTQAERSI  111 (115)
T ss_dssp             HS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            98 99999999999999999999986

>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}

Probab=100.00  E-value=9.1e-44  Score=277.93  Aligned_cols=103  Identities=22%  Similarity=0.425  Sum_probs=99.9

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHHhccCCCCCCCcchHHHHHHHHHHHHhhhhhc
Q 029365           90 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA  169 (194)
Q Consensus        90 g~~LPkdY~~dT~~VV~tLReaL~ldp~D~~~~~~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~  169 (194)
                      .+.||++|++||++||++||++|+| |+|++++++++++||++|||||++|||++.|+|++||+|||||||+|||||++|
T Consensus         5 ~~~L~~~Y~~dT~~Vv~~lr~~l~l-~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~   83 (113)
T 2y6x_A            5 PTGLTGNFREDTLALISSLREAIAL-PENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY   83 (113)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence            3569999999999999999999999 789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHhcC
Q 029365          170 GPSAPLPGEVKSEILNDLDTAEKFL  194 (194)
Q Consensus       170 Gp~rPLPeklK~RLlqEL~~AE~aL  194 (194)
                      | ++|||+|+|+||++||++||++|
T Consensus        84 g-~~PlPek~k~Rl~~el~~AE~al  107 (113)
T 2y6x_A           84 P-NRPLPEKLKARLEQEFKQVELAL  107 (113)
T ss_dssp             T-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            8 99999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1k78a1	63	Pax-5 {Human (Homo sapiens) [TaxId: 9606]}	83.2

>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.076  Score=35.65  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=22.1

Q ss_pred             HHHHHhhhhhcCCCCCCChHHHHHHHHHH
Q 029365          159 IRSLASFYSKAGPSAPLPGEVKSEILNDL  187 (194)
Q Consensus       159 LNsLAGhYss~Gp~rPLPeklK~RLlqEL  187 (194)
                      +|.|+|-|.+ |  +|||-++|+||.+-.
T Consensus         2 ~n~~gg~~~~-G--rPls~DLR~Riv~~~   27 (63)
T d1k78a1           2 VNQLGGVFVN-G--RPLPDVVRQRIVELA   27 (63)
T ss_dssp             BCTTSCBCCT-T--SCCCHHHHHHHHHHH
T ss_pred             cCCCCccccC-C--CcCCHHHHHHHHHHH
Confidence            4778999988 5  999999999999643