Citrus Sinensis ID: 029372

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLTSVI
Secondary Structure (PSIPRED)
cccEEEEEEEccccEEEEEEcccccEEEccccEEEccccccEEcEEEEEEEEEcccccccccccccEEEEcEEEEEEEccccccccEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccEEEEEEEccccccccccccEEEcccHHHHHccEEEEEEEEEEEcEEEEccccEEEEEEEEEEEEEccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcEEEEEcccccccEEEEEEcc
Coil and Loop (DISEMBL)
mgqalgciqvdqSTVAIKETfgkfddvlepgchclpwclgsqvagqlSLRVQQLDvrcetktkdnvFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRasvpkldldatfEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFShltmypsiyltsvi
Flexible Loop (DISEMBL)
mgqalgciqvdqSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVrcetktkdnvfvNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLTSVI
Low Complexity Region (SEG)
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLTSVI
Disordered region (IsUnstruct)
****LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLT***
Disordered Region (DISOPRED)
***ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMN*******CASFGIIVYFSHLTMYPSIYLTSVI
Disordered Region (DISEMBL)
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLTSVI
Disordered Region (DISPRO)
*GQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLTSVI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLTMYPSIYLTSVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q9CAR7	286	Hypersensitive-induced re	yes	no	0.855	0.580	0.927	4e-89
Q9FM19	286	Hypersensitive-induced re	no	no	0.855	0.580	0.897	5e-84
Q9SRH6	285	Hypersensitive-induced re	no	no	0.860	0.585	0.712	1e-66
Q9FHM7	292	Hypersensitive-induced re	no	no	0.819	0.544	0.565	2e-47
P16148	184	Protein PPLZ12 OS=Lupinus	N/A	no	0.319	0.336	0.578	2e-12
P72655	321	Uncharacterized protein s	N/A	no	0.721	0.436	0.284	4e-07
P0DKS0	313	Protein QmcA OS=Wiggleswo	yes	no	0.711	0.440	0.222	0.0001
P0AA56	305	Protein QmcA OS=Shigella	yes	no	0.721	0.459	0.239	0.0002
P0AA53	305	Protein QmcA OS=Escherich	N/A	no	0.721	0.459	0.239	0.0002
P0AA54	305	Protein QmcA OS=Escherich	yes	no	0.721	0.459	0.239	0.0002

>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1

 Score =  327 bits (837), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINA 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1

 Score =  310 bits (793), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 149/166 (89%), Positives = 154/166 (92%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MG    C+QVDQSTVAIKETFGKF+DVLEPGCH LPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVAS+QYRALA KA+DA+YKLSNTR QIQAYVFDVIRASVPKL LD  FEQ
Sbjct: 61  KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           KNDIAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINA
Sbjct: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINA 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/167 (71%), Positives = 139/167 (83%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MG    C+ V QS VA+KE FGKF  VL PG   +PW +G  VAG L+LR+QQLDV+CET
Sbjct: 1   MGNLFCCVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYR LA+KASDAFY+LSN  +QI+AYVFDVIRA VPKL+LD  FEQ
Sbjct: 61  KTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KN+IAK+VEEEL+KAM+ YGYEI+QTLI+DIEPD+ VKRAMNEINA 
Sbjct: 121 KNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINAA 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 2/161 (1%)

Query: 6   GCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDN 65
           GCI+  Q++V + E +G+F+ + EPGCH      G  +AG LS R++ LDV+ ETKTKDN
Sbjct: 10  GCIE--QASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKIETKTKDN 67

Query: 66  VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIA 125
           VFV +V S+QYR +   A DAFY+L N + QIQAYVFDV+RA VP + LDA FEQK ++A
Sbjct: 68  VFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALFEQKGEVA 127

Query: 126 KAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           K+V EELEK M  YGY I   L+VDI PD  V++AMNEINA
Sbjct: 128 KSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINA 168

Arabidopsis thaliana (taxid: 3702)

>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 112 LDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG--MM 169
           ++LD  FEQK ++AK+V EELEK M  YGY I   L+VDI PD+ V+RAMNEINA   M 
Sbjct: 1   MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQ 60

Query: 170 CASF 173
            AS 
Sbjct: 61  LASL 64

Lupinus polyphyllus (taxid: 3874)

>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 19  ETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET-KTKDNVFVNVVASVQYR 77
           E  G ++  L PG +     L   V  Q + R + +D+  ++  TKDNV +   A V +R
Sbjct: 32  ERLGSYNKKLTPGLNFTVPILDRVVFKQTT-REKVIDIPPQSCITKDNVAITADAVVYWR 90

Query: 78  ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMS 137
            +      A+YK+ N +S +   V   IR+ + KL+LD TF  + +I + +  EL+ +  
Sbjct: 91  II--DMEKAYYKVENLQSAMVNLVLTQIRSEIGKLELDQTFTARTEINELLLRELDISTD 148

Query: 138 HYGYEIVQTLIVDIEPDEHVKRAM 161
            +G ++ +  + DI P + V  +M
Sbjct: 149 PWGVKVTRVELRDIMPSKAVLDSM 172

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRCE---TKTKDNVFVNVVASV 74
           E FGK+ + L PG +  +P+    ++  ++++  + +D+  +   +K   NV ++ +  +
Sbjct: 30  ERFGKYIETLNPGINFIIPFV--DRIGHKINMMERVIDIPSQEIISKDNANVTIDAICFI 87

Query: 75  QYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK 134
           Q       A++A Y++SN    I       +R  +  ++LD    Q+++I   +   +++
Sbjct: 88  QIT----NANNAAYRVSNLEIAIINLTMTNMRTVLGNMELDEMLSQRDNINIQLLNIVDE 143

Query: 135 AMSHYGYEIVQTLIVDIEPDEHVKRAMN 162
           A   +G +I +  I DI P   +  +MN
Sbjct: 144 ATKPWGVKITRVEIKDIRPPAELIESMN 171

Wigglesworthia glossinidia brevipalpis (taxid: 36870)

>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAM 136
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I   +   +++A 
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 137 SHYGYEIVQTLIVDIEPDEHVKRAMN 162
           + +G ++ +  I D+ P   +  +MN
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMN 173

Shigella flexneri (taxid: 623)

>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAM 136
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I   +   +++A 
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 137 SHYGYEIVQTLIVDIEPDEHVKRAMN 162
           + +G ++ +  I D+ P   +  +MN
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMN 173

Identified as a multi-copy suppressor of an FtsH/HtpX protease double disruption mutant. May play a role in the quality control of integral membrane proteins.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAM 136
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I   +   +++A 
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 137 SHYGYEIVQTLIVDIEPDEHVKRAMN 162
           + +G ++ +  I D+ P   +  +MN
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMN 173

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
255558218	285	Protein PPLZ12, putative [Ricinus commun	0.860	0.585	0.928	2e-89
449458019	284	PREDICTED: hypersensitive-induced respon	0.860	0.588	0.916	3e-88
297841721	286	band 7 family protein [Arabidopsis lyrat	0.855	0.580	0.927	2e-87
15222481	286	Hypersensitive-induced response protein	0.855	0.580	0.927	2e-87
222423911	286	AT1G69840 [Arabidopsis thaliana]	0.855	0.580	0.927	2e-87
225424906	286	PREDICTED: hypersensitive-induced respon	0.860	0.583	0.904	2e-85
296086429	373	unnamed protein product [Vitis vinifera]	0.860	0.447	0.904	3e-85
356500513	286	PREDICTED: hypersensitive-induced respon	0.860	0.583	0.874	3e-84
225456672	291	PREDICTED: hypersensitive-induced respon	0.860	0.573	0.880	6e-84
255640030	187	unknown [Glycine max]	0.860	0.893	0.874	7e-84

>gi|255558218|ref|XP_002520136.1| Protein PPLZ12, putative [Ricinus communis] gi|223540628|gb|EEF42191.1| Protein PPLZ12, putative [Ricinus communis]

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/167 (92%), Positives = 162/167 (97%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGC+QVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQ+AG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCVQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA+DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+ FEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAADAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSAFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KNDIAKAVE ELEKAMSHYG+EIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 121 KNDIAKAVENELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNEINAA 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458019|ref|XP_004146745.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449458021|ref|XP_004146746.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449520329|ref|XP_004167186.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449520331|ref|XP_004167187.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|34484310|gb|AAQ72788.1| hypersensitive-induced response protein [Cucumis sativus]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 153/167 (91%), Positives = 162/167 (97%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQSTVAI+ETFG+FDDVL+PGCHCLPWCLGSQ+AG LSLR+QQLDVRCET
Sbjct: 1   MGQALGCIQVDQSTVAIRETFGRFDDVLQPGCHCLPWCLGSQIAGHLSLRLQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALA+KASDAFYKLSNTR QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALADKASDAFYKLSNTREQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KNDIAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 121 KNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841721|ref|XP_002888742.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297334583|gb|EFH65001.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINA 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222481|ref|NP_177142.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|30697929|ref|NP_849870.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|42572051|ref|NP_974116.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|42572053|ref|NP_974117.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|145327201|ref|NP_001077802.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|145327203|ref|NP_001077803.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|334183794|ref|NP_001185358.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|75271990|sp|Q9CAR7.1|HIR2_ARATH RecName: Full=Hypersensitive-induced response protein 2; Short=AtHIR2 gi|12325226|gb|AAG52556.1|AC010675_4 unknown protein; 58197-59415 [Arabidopsis thaliana] gi|20466748|gb|AAM20691.1| unknown protein [Arabidopsis thaliana] gi|23198256|gb|AAN15655.1| unknown protein [Arabidopsis thaliana] gi|332196863|gb|AEE34984.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196864|gb|AEE34985.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196865|gb|AEE34986.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196866|gb|AEE34987.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196867|gb|AEE34988.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196868|gb|AEE34989.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196869|gb|AEE34990.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINA 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423911|dbj|BAH19919.1| AT1G69840 [Arabidopsis thaliana]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINA 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424906|ref|XP_002276517.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/167 (90%), Positives = 158/167 (94%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQA  CIQVDQS VAIKE FGKFD+VLEPGCHCLPWC GSQ+AG LSLRVQQLDVRCET
Sbjct: 1   MGQAFCCIQVDQSNVAIKEQFGKFDEVLEPGCHCLPWCFGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKASDAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKASDAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KN+IAKAVEEELEKAMS YG+EIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 121 KNEIAKAVEEELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAA 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086429|emb|CBI32018.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/167 (90%), Positives = 158/167 (94%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQA  CIQVDQS VAIKE FGKFD+VLEPGCHCLPWC GSQ+AG LSLRVQQLDVRCET
Sbjct: 88  MGQAFCCIQVDQSNVAIKEQFGKFDEVLEPGCHCLPWCFGSQLAGHLSLRVQQLDVRCET 147

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKASDAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 148 KTKDNVFVTVVASIQYRALAEKASDAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSTFEQ 207

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KN+IAKAVEEELEKAMS YG+EIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 208 KNEIAKAVEEELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAA 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500513|ref|XP_003519076.1| PREDICTED: hypersensitive-induced response protein 1-like [Glycine max]

 Score =  316 bits (809), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 146/167 (87%), Positives = 159/167 (95%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQ LGC+QVDQS++AIKE FGK+DDVLEPGCHC+PWC GS+VAG LSLRV+QLDVRCET
Sbjct: 1   MGQVLGCVQVDQSSLAIKEVFGKYDDVLEPGCHCVPWCFGSRVAGALSLRVKQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA DA+YKLSNTRSQIQ+YVFDVIRASVPK++LDATFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAVDAYYKLSNTRSQIQSYVFDVIRASVPKMELDATFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KN+IAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 121 KNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456672|ref|XP_002272267.1| PREDICTED: hypersensitive-induced response protein 1 isoform 3 [Vitis vinifera]

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 147/167 (88%), Positives = 158/167 (94%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MG  LGCIQVDQSTVAIKE FGKF++VLEPGCHCLPWC GSQ+AG LSLR+QQLDVRCET
Sbjct: 6   MGNLLGCIQVDQSTVAIKERFGKFEEVLEPGCHCLPWCFGSQLAGHLSLRLQQLDVRCET 65

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVAS+QYRALA+KA+DAFYKLSNTRSQIQAYVFDVIRASVPKL+LD  FEQ
Sbjct: 66  KTKDNVFVNVVASIQYRALADKANDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDAFEQ 125

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KN+IAK+VE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 126 KNEIAKSVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640030|gb|ACU20306.1| unknown [Glycine max]

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 146/167 (87%), Positives = 159/167 (95%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQ LGC+QVDQS++AIKE FGK+DDVLEPGCHC+PWC GS+VAG LSLRV+QLDVRCET
Sbjct: 1   MGQVLGCVQVDQSSLAIKEVFGKYDDVLEPGCHCVPWCFGSRVAGALSLRVKQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA DA+YKLSNTRSQIQ+YVFDVIRASVPK++LDATFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAVDAYYKLSNTRSQIQSYVFDVIRASVPKMELDATFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG 167
           KN+IAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINA 
Sbjct: 121 KNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2196749	286	AT1G69840 [Arabidopsis thalian	0.855	0.580	0.927	3.3e-79
TAIR|locus:2170698	286	HIR1 "HYPERSENSITIVE-INDUCED R	0.855	0.580	0.897	4.5e-75
TAIR|locus:2100242	285	HIR2 "hypersensitive induced r	0.855	0.582	0.716	5e-60
TAIR|locus:2153117	292	AT5G51570 [Arabidopsis thalian	0.819	0.544	0.565	5e-44
UNIPROTKB|Q5LQ79	296	SPO2617 "SPFH domain/band 7 fa	0.793	0.520	0.295	1.8e-12
TIGR_CMR|SPO_2617	296	SPO_2617 "SPFH domain/band 7 f	0.793	0.520	0.295	1.8e-12
UNIPROTKB|Q81JF5	321	BAS1928 "SPFH domain/Band 7 fa	0.773	0.467	0.288	1.2e-11
TIGR_CMR|BA_2075	321	BA_2075 "SPFH domain/Band 7 fa	0.773	0.467	0.288	1.2e-11
UNIPROTKB|Q8CX36	311	SO_4129 "Putative negative reg	0.742	0.463	0.3	5e-10
TIGR_CMR|SO_4129	311	SO_4129 "SPFH domain/Band 7 fa	0.742	0.463	0.3	5e-10

TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 154/166 (92%), Positives = 158/166 (95%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct:     1 MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct:    61 KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query:   121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
             KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA
Sbjct:   121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINA 166

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 149/166 (89%), Positives = 154/166 (92%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MG    C+QVDQSTVAIKETFGKF+DVLEPGCH LPWCLGSQVAG LSLRVQQLDVRCET
Sbjct:     1 MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFVNVVAS+QYRALA KA+DA+YKLSNTR QIQAYVFDVIRASVPKL LD  FEQ
Sbjct:    61 KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query:   121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
             KNDIAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINA
Sbjct:   121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINA 166

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 119/166 (71%), Positives = 139/166 (83%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MG    C+ V QS VA+KE FGKF  VL PG   +PW +G  VAG L+LR+QQLDV+CET
Sbjct:     1 MGNLFCCVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFV VVAS+QYR LA+KASDAFY+LSN  +QI+AYVFDVIRA VPKL+LD  FEQ
Sbjct:    61 KTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQ 120

Query:   121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
             KN+IAK+VEEEL+KAM+ YGYEI+QTLI+DIEPD+ VKRAMNEINA
Sbjct:   121 KNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINA 166

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 91/161 (56%), Positives = 116/161 (72%)

Query:     6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDN 65
             GCI+  Q++V + E +G+F+ + EPGCH      G  +AG LS R++ LDV+ ETKTKDN
Sbjct:    10 GCIE--QASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKIETKTKDN 67

Query:    66 VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIA 125
             VFV +V S+QYR +   A DAFY+L N + QIQAYVFDV+RA VP + LDA FEQK ++A
Sbjct:    68 VFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALFEQKGEVA 127

Query:   126 KAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
             K+V EELEK M  YGY I   L+VDI PD  V++AMNEINA
Sbjct:   128 KSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINA 168

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 169 (64.5 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 47/159 (29%), Positives = 79/159 (49%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVFV 68
             V QS   + E FG+   VL PG + +   L   V  ++S+  +QL    +   TKDNV V
Sbjct:    34 VPQSEKFVVERFGRLHAVLGPGINFIVPFL-DVVRHKISILERQLPTASQDAITKDNVLV 92

Query:    69 NVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAV 128
              V  SV YR + E      Y++ +    I   V  ++RA + K+DLD     +  +   +
Sbjct:    93 QVDTSVFYR-ITEPEKTV-YRIRDVDGAISTTVAGIVRAEIGKMDLDEVQSNRAQLISTI 150

Query:   129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM-NEINA 166
             +  +E A+  +G E+ +  I+D+  D+  + AM  ++NA
Sbjct:   151 KSSVEDAVDDWGIEVTRAEILDVNLDQATRDAMLQQLNA 189

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2617 SPO_2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 169 (64.5 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 47/159 (29%), Positives = 79/159 (49%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVFV 68
             V QS   + E FG+   VL PG + +   L   V  ++S+  +QL    +   TKDNV V
Sbjct:    34 VPQSEKFVVERFGRLHAVLGPGINFIVPFL-DVVRHKISILERQLPTASQDAITKDNVLV 92

Query:    69 NVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAV 128
              V  SV YR + E      Y++ +    I   V  ++RA + K+DLD     +  +   +
Sbjct:    93 QVDTSVFYR-ITEPEKTV-YRIRDVDGAISTTVAGIVRAEIGKMDLDEVQSNRAQLISTI 150

Query:   129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM-NEINA 166
             +  +E A+  +G E+ +  I+D+  D+  + AM  ++NA
Sbjct:   151 KSSVEDAVDDWGIEVTRAEILDVNLDQATRDAMLQQLNA 189

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)]

 Score = 163 (62.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 45/156 (28%), Positives = 79/156 (50%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             + Q  V + E FGKF  V++PG + L P  +  +V     LR+QQ +V  +   TKDNV 
Sbjct:    25 IPQQKVGVVERFGKFQRVMQPGLNLLIP--IVDRVRVYHDLRIQQTNVPPQKVITKDNVQ 82

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
             V +   + Y+ +  +   A Y +SN    ++      +R  + K++LD T   +  I+  
Sbjct:    83 VEIDTIIFYQVVEPEL--ATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTE 140

Query:   128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163
             +   L++A   +G  I +  +VDI P + V+ +M +
Sbjct:   141 IRLALDEATEKWGVRIERVEVVDINPPKDVQASMEK 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 163 (62.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 45/156 (28%), Positives = 79/156 (50%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             + Q  V + E FGKF  V++PG + L P  +  +V     LR+QQ +V  +   TKDNV 
Sbjct:    25 IPQQKVGVVERFGKFQRVMQPGLNLLIP--IVDRVRVYHDLRIQQTNVPPQKVITKDNVQ 82

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
             V +   + Y+ +  +   A Y +SN    ++      +R  + K++LD T   +  I+  
Sbjct:    83 VEIDTIIFYQVVEPEL--ATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTE 140

Query:   128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163
             +   L++A   +G  I +  +VDI P + V+ +M +
Sbjct:   141 IRLALDEATEKWGVRIERVEVVDINPPKDVQASMEK 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8CX36 SO_4129 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 45/150 (30%), Positives = 75/150 (50%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             V    V + E  GKF  VL+PG H L P+    +VA +   R Q LDV  ++  +KDN  
Sbjct:    22 VPMREVHVIERLGKFRTVLQPGFHFLIPFF--DRVAYRHDTREQVLDVPPQSCISKDNTQ 79

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
             + V   V  + +  K   A Y + N R          +R+ + KL L  TF +++ + ++
Sbjct:    80 LEVDGLVYLKVMDGKL--ASYGIENYRKAAVNLAQTTMRSEIGKLTLSETFSERDHLNES 137

Query:   128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHV 157
             +  E++KA   +G ++++  I +I P  HV
Sbjct:   138 IVREIDKASEPWGIKVLRYEIRNITPSRHV 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4129 SO_4129 "SPFH domain/Band 7 family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 45/150 (30%), Positives = 75/150 (50%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             V    V + E  GKF  VL+PG H L P+    +VA +   R Q LDV  ++  +KDN  
Sbjct:    22 VPMREVHVIERLGKFRTVLQPGFHFLIPFF--DRVAYRHDTREQVLDVPPQSCISKDNTQ 79

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
             + V   V  + +  K   A Y + N R          +R+ + KL L  TF +++ + ++
Sbjct:    80 LEVDGLVYLKVMDGKL--ASYGIENYRKAAVNLAQTTMRSEIGKLTLSETFSERDHLNES 137

Query:   128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHV 157
             +  E++KA   +G ++++  I +I P  HV
Sbjct:   138 IVREIDKASEPWGIKVLRYEIRNITPSRHV 167

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAR7	HIR2_ARATH	No assigned EC number	0.9277	0.8556	0.5804	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	1e-85
smart00244	160	smart00244, PHB, prohibitin homologues	3e-28
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	2e-27
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	2e-22
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	2e-20
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	3e-19
cd03404	266	cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma	1e-08
cd03408	207	cd03408, Band_7_5, A subgroup of the band 7 domain	2e-05
TIGR01933	261	TIGR01933, hflK, HflK protein	1e-04
cd03400	124	cd03400, Band_7_1, A subgroup of the band 7 domain	4e-04
cd03399	128	cd03399, Band_7_flotillin, Band_7_flotillin: a sub	0.001

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  252 bits (646), Expect = 1e-85
 Identities = 106/155 (68%), Positives = 118/155 (76%), Gaps = 1/155 (0%)

Query: 12  QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVV 71
           QS VAI E FGKF  V  PGCH +       VAG+LSLRVQQLDVR ETKTKDNVFV VV
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 72  ASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEE 131
             +QYR   E A+DAFYKL N   QIQ+YVFDV+RA +PKL LD  FEQK++IAKAVEEE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 132 LEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           L +AMS YG+EIV TLI DI+PD  VKRAMNEINA
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINA 154

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  103 bits (258), Expect = 3e-28
 Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 10  VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVF 67
           V +    + E  G+   VL PG H L P+        ++ LR Q  DV   ET TKDNV 
Sbjct: 6   VGEGERGVVERLGRVLRVLGPGLHFLIPFI---DDVKKVDLRAQTDDVPPQETITKDNVK 62

Query: 68  VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAK 126
           V+V A V YR + +     +  L    + I+      +R+ + K  LD     Q+  I++
Sbjct: 63  VSVDAVVYYR-VLDPLRAVYRVLDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKISE 121

Query: 127 AVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165
            + EEL +A   +G ++    I DI   E +K AM    
Sbjct: 122 NIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score =  101 bits (254), Expect = 2e-27
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 8   IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV--RCETKTKDN 65
             V    V +   FGK   VL PG H         +   +  R+Q L+V       TKD 
Sbjct: 1   TIVPPGEVGVVTRFGKVSRVLGPGLHFK-LPFIQTIT-VVDTRLQTLEVTVDITVLTKDG 58

Query: 66  VFVNVVASVQYR-ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124
           V VNV  +VQYR     K    +    + +  ++  V   +R  + +  LD     + +I
Sbjct: 59  VPVNVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEI 118

Query: 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA 166
           A+ V+E L++ +  YG EI    I DI+P   +  A+ E  A
Sbjct: 119 AQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQA 160

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 87.0 bits (216), Expect = 2e-22
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 46  QLSLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSN--TRSQIQAYVF 102
           ++ LR Q LDV   E  TKDNV V V A VQYR        A Y + +      ++    
Sbjct: 1   RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRV--VDPVKALYNVRDPEDEEALRQLAQ 58

Query: 103 DVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMN 162
             +R+ + K+ LD   E +++IA  V E L++ +  YG E+V   I DI+P E V+ AM 
Sbjct: 59  SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118

Query: 163 EIN 165
           +  
Sbjct: 119 DRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 10  VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV-RCETKTKDNVFV 68
           V Q    + E  GK+   L PG H +      ++A ++ LR Q LDV   E  TKDNV V
Sbjct: 1   VPQYERGVVERLGKYHRTLGPGLHFI-IPFIDRIAYKVDLREQVLDVPPQEVITKDNVTV 59

Query: 69  NVVASVQYRAL-AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
            V A + YR +   KA    Y + + R  I       +R+ + K++LD    ++ +I   
Sbjct: 60  RVDAVLYYRVVDPVKAV---YGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAE 116

Query: 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163
           + E L++A   +G ++ +  I DI   + ++ AM +
Sbjct: 117 LVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAK 152

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 6   GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGS--QVAGQLSLRVQQLDVRCETK- 61
               V +    +   FG++   L EPG H       +  +V  ++ LR + LDV    + 
Sbjct: 20  SIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEV 79

Query: 62  -TKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF-E 119
            TKDNV V+V A VQYR        A Y + N  + ++  V   +R+ + ++ LD    E
Sbjct: 80  ITKDNVIVSVDAVVQYRV--TDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTE 137

Query: 120 QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163
           ++ +I   + E L++A   +G ++V   I DI+P E V+ AM +
Sbjct: 138 RRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEK 181

Length = 291

>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 45/187 (24%)

Query: 9   QVDQSTVAIKETFGKFDDVLEPGCHC-LPW-----------CLGSQVAGQLSLRVQQLDV 56
            V      +   FGK+   +EPG H  LP+            L S         V+ +  
Sbjct: 17  IVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPG 76

Query: 57  RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDV------------ 104
                T D   V+V  +VQYR      SD              Y+F+V            
Sbjct: 77  ESLMLTGDENIVDVEFAVQYR-----ISDP-----------YDYLFNVRDPEGTLRQAAE 120

Query: 105 --IRASVPKLDLDATF-EQKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKR 159
             +R  V +  LD    E + +IA+ V E L+  +  Y  G EIV   + D +P E V+ 
Sbjct: 121 SAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQD 180

Query: 160 AMNEINA 166
           A +++N 
Sbjct: 181 AFDDVNK 187

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 266

>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 94  RSQIQAYVFDVIRASV-PKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 152
           R+ I A +   +  S    + L A  +   +++KAV E L    + +G E+V   I  I 
Sbjct: 138 RALIVAALSSALSESGLAVMLLAANRD---ELSKAVREALAPWFASFGLELVSVYIESIS 194

Query: 153 PDEHVKRAMNE 163
             + V++ +++
Sbjct: 195 YPDEVQKLIDK 205

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 207

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 10  VDQSTVAIKETFGKFDDVLEPGCHCLP----WCLGSQVAGQLSLRVQQLDVRCETKTKDN 65
           + ++   +   FGK+   ++PG +  P          V       V+ L  +    T D 
Sbjct: 4   IGEAERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPVNVT-----AVRNLRKQGLMLTGDE 58

Query: 66  VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF-EQKNDI 124
             VNV  +VQYR          + + N    ++      +R  +    +D    E ++ I
Sbjct: 59  NIVNVEMNVQYR--ITDPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQI 116

Query: 125 AKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINA 166
            +  +E L + + +Y  G  +         P E VK A +++  
Sbjct: 117 REDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVII 160

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 48  SLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL--SNTRSQIQAYVFDVI 105
           S R+Q++D + +  +K+ + +N   SVQYR    KA+    KL     R  ++     ++
Sbjct: 4   STRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLV 63

Query: 106 RASVPKLDLDATFEQKND-IAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA 160
           R    +   +  +  K   I  A+++EL +     G  + + L+ +I+  + +  A
Sbjct: 64  REVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADA 119

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 124

>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 47  LSLRVQQLDVRCET-KTKDNVFVNVVASVQYR-----ALAEKASDAFYKLSNTRSQIQAY 100
           LSL    L V  E   T+D V V+V A  Q +          A++ F  L  +  +I+  
Sbjct: 2   LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERF--LGKSEEEIEEL 59

Query: 101 VFDVI----RASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPD 154
           V +V+    RA V  + ++  +E ++  A+ V+E +   ++  G E+    I DI   
Sbjct: 60  VKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDT 117

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
smart00244	160	PHB prohibitin homologues. prohibitin homologues	100.0
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	100.0
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	100.0
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.92
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	99.91
KOG3083	271	consensus Prohibitin [Posttranslational modificati	99.89
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.85
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.83
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.75
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.65
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.63
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.59
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.58
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	99.12
PTZ00491	850	major vault protein; Provisional	97.63
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	96.73
PRK13665	316	hypothetical protein; Provisional	95.15
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	95.11
COG1580	159	FliL Flagellar basal body-associated protein [Cell	94.85
PF03748	99	FliL: Flagellar basal body-associated protein FliL	91.45
PRK07718	142	fliL flagellar basal body-associated protein FliL;	90.21
PRK06654	181	fliL flagellar basal body-associated protein FliL;	88.05
PRK05697	137	flagellar basal body-associated protein FliL-like	87.29
PRK07021	162	fliL flagellar basal body-associated protein FliL;	84.8
PRK08455	182	fliL flagellar basal body-associated protein FliL;	84.5
PRK12785	166	fliL flagellar basal body-associated protein FliL;	84.02
PRK05696	170	fliL flagellar basal body-associated protein FliL;	82.45

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.5e-39  Score=257.96  Aligned_cols=176  Identities=14%  Similarity=0.250  Sum_probs=166.3

Q ss_pred             EEEEecCCeeEEEeecCeeeeee-CCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccch
Q 029372            6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA   83 (194)
Q Consensus         6 ~~~~V~~ge~~Vv~~~Gk~~~~l-~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~   83 (194)
                      ||++|+|||+||+++||++.+++ +||+||++||+ +.  ..+|+|.+.++.++ .+.|+|++++.+++.++|||.|  |
T Consensus         1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p   75 (219)
T cd03402           1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T   75 (219)
T ss_pred             CeEEECCCeeEEEEEcCcCcccccCCceEEEeccc-eE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence            68999999999999999999875 99999999998 54  38999999999988 5999999999999999999997  8


Q ss_pred             hhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHh-------cHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHH
Q 029372           84 SDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-------QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH  156 (194)
Q Consensus        84 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-------~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~  156 (194)
                      .+++|++.|++..|.+.+++++|+++|+++++++++       +|++++.++++.+++.++.|||+|.++.|+++.||++
T Consensus        76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e  155 (219)
T cd03402          76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE  155 (219)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence            999999999999999999999999999999999985       5799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcceecccccccCc
Q 029372          157 VKRAMNEINAGMMCASFGIIVYFSHLTMYP  186 (194)
Q Consensus       157 i~~a~~~~~~A~~~~~a~ii~A~~~~~~~~  186 (194)
                      +.+||.++|.|+++.+|+-..++|.+.|-+
T Consensus       156 i~~am~~R~~Ae~~~~Ar~~~~~Ga~~~~~  185 (219)
T cd03402         156 IAQAMLQRQQASAIIAARRKIVEGAVGMVE  185 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            999999999999999999999999888864

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=2.6e-38  Score=251.60  Aligned_cols=171  Identities=27%  Similarity=0.358  Sum_probs=162.1

Q ss_pred             ecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcc
Q 029372           10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFY   88 (194)
Q Consensus        10 V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~   88 (194)
                      |+|||+||+++||++.++++||+||++||+ +.+.+.+|++.+.++++. .+.|+|++++.+++++.|||.|  |.++++
T Consensus         1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~-~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~~~~~   77 (215)
T cd03403           1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI-DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVD--PVKAVY   77 (215)
T ss_pred             CCcceEEEEEEcCcCccccCCcEEEEeccc-eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEec--HHHHHh
Confidence            689999999999999999999999999998 544248999999999987 5999999999999999999986  889998


Q ss_pred             cccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHH
Q 029372           89 KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGM  168 (194)
Q Consensus        89 ~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~  168 (194)
                      ...+++..+.+.+++++|+++|++++++++++|+.+++.+++.|++.+++|||+|+++.|+++++|+++.++++++++|+
T Consensus        78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~  157 (215)
T cd03403          78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE  157 (215)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhcceecccccc
Q 029372          169 MCASFGIIVYFSHLT  183 (194)
Q Consensus       169 ~~~~a~ii~A~~~~~  183 (194)
                      ++++|++++|+|+.+
T Consensus       158 ~~~~a~i~~A~ge~~  172 (215)
T cd03403         158 REKRAKIIEAEGERQ  172 (215)
T ss_pred             HHHHHHHHHhHHHHH
Confidence            999999999999854

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2e-38  Score=259.49  Aligned_cols=169  Identities=63%  Similarity=0.866  Sum_probs=158.1

Q ss_pred             CCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccchhhhccccc
Q 029372           12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS   91 (194)
Q Consensus        12 ~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~   91 (194)
                      +|+.|||++||++.++++||+||++||+ +++...+++|.+.++++.+++|+|++.|.++++++|||.|+++.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            5899999999999999999999999998 555348999999999988899999999999999999999744458899999


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhh
Q 029372           92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCA  171 (194)
Q Consensus        92 ~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~  171 (194)
                      ++...|.+.+++++|+++|++++++++++|+.++..+.+.+++.+++|||.|+++.|+++.||+++++||++++.|+|++
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcceecccc
Q 029372          172 SFGIIVYFSH  181 (194)
Q Consensus       172 ~a~ii~A~~~  181 (194)
                      +|.+.+|++.
T Consensus       160 ~a~~~~Aea~  169 (262)
T cd03407         160 VAAVHKAEAE  169 (262)
T ss_pred             HHHHHHhhHH
Confidence            9888877754

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=4.5e-37  Score=257.62  Aligned_cols=177  Identities=19%  Similarity=0.207  Sum_probs=158.9

Q ss_pred             ceeEEEEecCCeeEEEeecCeeee-------eeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEE
Q 029372            3 QALGCIQVDQSTVAIKETFGKFDD-------VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV   74 (194)
Q Consensus         3 ~~~~~~~V~~ge~~Vv~~~Gk~~~-------~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v   74 (194)
                      +++||++|++||+||+++||++.+       +++||+||++||+ +++ +.+|+|.+.++.+. +++|+|++.+.|++++
T Consensus        16 l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfi-d~V-~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V   93 (334)
T PRK11029         16 LYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFI-ETV-KMLDARIQTMDNQADRFVTKEKKDLIVDSYI   93 (334)
T ss_pred             HHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCc-eEE-EEEeeEEEEeeCCCceEEcCCCCEEEEEEEE
Confidence            467999999999999999999986       4899999999998 666 48999999999987 6999999999999999


Q ss_pred             EEEEcccchhhhcccc--cC---hHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHH-------------
Q 029372           75 QYRALAEKASDAFYKL--SN---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKA-------------  135 (194)
Q Consensus        75 ~yrV~d~~~~~~~~~~--~~---~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~-------------  135 (194)
                      +|||.|  |.++++..  .|   +...|.+.+++++|+++|+++++++++ +|+++..++++.+++.             
T Consensus        94 ~yrI~D--p~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~  171 (334)
T PRK11029         94 KWRISD--FSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA  171 (334)
T ss_pred             EEEECC--HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence            999996  88877643  23   457789999999999999999999995 7999999999999964             


Q ss_pred             --------------------------hcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhhhcceecccccc
Q 029372          136 --------------------------MSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLT  183 (194)
Q Consensus       136 --------------------------~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~~~~  183 (194)
                                                +.+|||+|.+|.|+++.||+++.+||+++|+|+|+++|..++|+|+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~  245 (334)
T PRK11029        172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEE  245 (334)
T ss_pred             ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      478999999999999999999999999999999999998888887643

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.3e-37  Score=248.20  Aligned_cols=172  Identities=19%  Similarity=0.195  Sum_probs=157.0

Q ss_pred             EEEecCCeeEEEeecCeeee-eeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchh
Q 029372            7 CIQVDQSTVAIKETFGKFDD-VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS   84 (194)
Q Consensus         7 ~~~V~~ge~~Vv~~~Gk~~~-~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~   84 (194)
                      ||+|+|||+||+++||++.+ +++||+||++||+ +.+ +.+|++.+.++++. .++|+|++.+.+++++.|||.|  |.
T Consensus         1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i-~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~   76 (242)
T cd03405           1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFI-QQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITD--PL   76 (242)
T ss_pred             CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCc-ceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcC--HH
Confidence            68999999999999999987 6899999999998 445 58999999988876 6999999999999999999996  77


Q ss_pred             hhcccccCh----HHHHHHHHHHHHHHHccCCCHHHHHhc-HHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHH
Q 029372           85 DAFYKLSNT----RSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR  159 (194)
Q Consensus        85 ~~~~~~~~~----~~~l~~~~~~~lr~~i~~~~~~~l~~~-R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~  159 (194)
                      ++++++.++    +..|.+.+++++|+++|++++++++++ |+++++.+++.|++.+++|||+|+++.|+++.||+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~  156 (242)
T cd03405          77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE  156 (242)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence            888776654    378999999999999999999999976 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcceeccccc
Q 029372          160 AMNEINAGMMCASFGIIVYFSHL  182 (194)
Q Consensus       160 a~~~~~~A~~~~~a~ii~A~~~~  182 (194)
                      +|++++.|+|+++|+.++|+|+.
T Consensus       157 ai~~~~~ae~~~~a~~~~ae~~~  179 (242)
T cd03405         157 SVYRRMRAERERIAAEFRAEGEE  179 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999988887777654

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=2.2e-36  Score=259.79  Aligned_cols=174  Identities=20%  Similarity=0.301  Sum_probs=156.5

Q ss_pred             ceeEEEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEccc
Q 029372            3 QALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAE   81 (194)
Q Consensus         3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~   81 (194)
                      +++|||+|+|+|+|||++|||+.++++||+||++||+ +.+ ..++++.+....+. .++|+|++.|.|+++++|||.| 
T Consensus        93 l~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfI-d~V-~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D-  169 (419)
T PRK10930         93 AASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFI-DEV-KPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD-  169 (419)
T ss_pred             HHheEEEECCCeEEEEEECCcCcceeCCceEEecCce-EEE-EEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC-
Confidence            4679999999999999999999999999999999998 656 37888776544333 6999999999999999999996 


Q ss_pred             chhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCCHHHH
Q 029372           82 KASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVK  158 (194)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p~~i~  158 (194)
                       |.+|+|++.+++..|++.++++||+++|+++++++++ +|+++..++++.+++.+++|  ||+|.+|+|+++.||++++
T Consensus       170 -p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~  248 (419)
T PRK10930        170 -PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVK  248 (419)
T ss_pred             -HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHH
Confidence             8999999999999999999999999999999999996 69999999999999999987  9999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcceeccc
Q 029372          159 RAMNEINAGMMCASFGIIVYFS  180 (194)
Q Consensus       159 ~a~~~~~~A~~~~~a~ii~A~~  180 (194)
                      +||++++.|++++++.+.+|++
T Consensus       249 ~Af~~v~~Are~~~~~i~eAea  270 (419)
T PRK10930        249 AAFDDAIAARENEQQYIREAEA  270 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888776655555544

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=2.8e-36  Score=236.74  Aligned_cols=176  Identities=15%  Similarity=0.196  Sum_probs=151.8

Q ss_pred             EEEEecCCeeEEEeecCeeee--eeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccch
Q 029372            6 GCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKA   83 (194)
Q Consensus         6 ~~~~V~~ge~~Vv~~~Gk~~~--~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~~   83 (194)
                      ||++|++|++||+++||+..+  +++||+||++||+ +.+ +.+|++.+.++++..+.|+|++.|++++.+.|++.++++
T Consensus         1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~-~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~   78 (196)
T cd03401           1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWF-QKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL   78 (196)
T ss_pred             CEEEECCCcEEEEEEecCccccCccCCceEEEcccc-cee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence            589999999999999998654  8999999999998 556 489999999888778899999999999999999985333


Q ss_pred             hhhcccc-cC-hHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHH
Q 029372           84 SDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM  161 (194)
Q Consensus        84 ~~~~~~~-~~-~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~  161 (194)
                      ..++..+ .+ .+..|.+.+++++|+++|+++++|++++|++|+..|++.+++.+++|||.|+++.|+++.||+++.+|+
T Consensus        79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai  158 (196)
T cd03401          79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV  158 (196)
T ss_pred             HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence            3332222 23 466799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH--------------HHHHhhhhcceecccccc
Q 029372          162 NEIN--------------AGMMCASFGIIVYFSHLT  183 (194)
Q Consensus       162 ~~~~--------------~A~~~~~a~ii~A~~~~~  183 (194)
                      ++++              +|+.++++++++|+|+.+
T Consensus       159 ~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~  194 (196)
T cd03401         159 EAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAE  194 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9744              455557778888888764

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=5.2e-36  Score=245.08  Aligned_cols=172  Identities=17%  Similarity=0.253  Sum_probs=154.0

Q ss_pred             EEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhh
Q 029372            7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD   85 (194)
Q Consensus         7 ~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~   85 (194)
                      +|+|+|||+||+++||++.++++||+||++||+ +.+ +.+|++.+....+. .++|+|++.+.++++++|||.|  |.+
T Consensus         1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i-~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~~~   76 (261)
T TIGR01933         1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITD--PYK   76 (261)
T ss_pred             CEEeCCCeEEEEEEcCccccccCCcceEECCCc-eEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECC--HHH
Confidence            589999999999999999999999999999998 556 48998764422233 5899999999999999999996  889


Q ss_pred             hcccccChHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCCHHHHHHHH
Q 029372           86 AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMN  162 (194)
Q Consensus        86 ~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p~~i~~a~~  162 (194)
                      ++|++.+++..|.+.+++++|+++|+++++++++ +|+++++.+.+.+++.++.|  ||.|+++.|+++.||+++++||+
T Consensus        77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~  156 (261)
T TIGR01933        77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD  156 (261)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence            9999999999999999999999999999999997 99999999999999999866  99999999999999999999999


Q ss_pred             HHHHHHHhhhhcceeccccc
Q 029372          163 EINAGMMCASFGIIVYFSHL  182 (194)
Q Consensus       163 ~~~~A~~~~~a~ii~A~~~~  182 (194)
                      +++.|++++++.+.+|++..
T Consensus       157 ~~~~a~q~~~~~~~~ae~~~  176 (261)
T TIGR01933       157 DVIIAREDEERYINEAEAYA  176 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988877665555443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.5e-36  Score=245.54  Aligned_cols=175  Identities=23%  Similarity=0.283  Sum_probs=153.2

Q ss_pred             eeEEEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEE----------Eee-c-cC-ccccCCCcEEEE
Q 029372            4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ----------QLD-V-RC-ETKTKDNVFVNV   70 (194)
Q Consensus         4 ~~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~----------~~~-~-~~-~v~TkD~~~v~v   70 (194)
                      ++||++|+|||+|||++||++.++++||+||++||+++ +...++++.+          ... . +. .++|+||+.+.+
T Consensus        12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v   90 (266)
T cd03404          12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIE-VVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV   90 (266)
T ss_pred             HcEEEEECCCceEEeEEcCccccccCCceeEecCCCcE-EEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence            57999999999999999999999999999999999844 3234444221          111 1 12 589999999999


Q ss_pred             EEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhc-HHHHHHHHHHHHHHHhccc--CeEEEEEE
Q 029372           71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTL  147 (194)
Q Consensus        71 ~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~-R~~l~~~i~~~l~~~~~~~--Gi~v~~v~  147 (194)
                      ++++.|||.|  |.+++|+..+++..|.+.+++++|+++|++++++++++ |+++++.+++.+++.++.|  ||.|+++.
T Consensus        91 d~~v~yrI~d--~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~  168 (266)
T cd03404          91 EFAVQYRISD--PYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN  168 (266)
T ss_pred             EEEEEEEECC--HHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence            9999999997  88899999999999999999999999999999999976 9999999999999999876  99999999


Q ss_pred             EeecCCCHHHHHHHHHHHHHHHhhhhcceecccc
Q 029372          148 IVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSH  181 (194)
Q Consensus       148 i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~~  181 (194)
                      |+++.||+++.+|+++++.|+|++++.+.+|++.
T Consensus       169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~  202 (266)
T cd03404         169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAY  202 (266)
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988877666554

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=2.9e-38  Score=249.59  Aligned_cols=178  Identities=37%  Similarity=0.503  Sum_probs=163.8

Q ss_pred             CCceeEEEE--ecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeecc-CccccCCCcEEEEEEEEEEE
Q 029372            1 MGQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQYR   77 (194)
Q Consensus         1 ~g~~~~~~~--V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~-~~v~TkD~~~v~v~~~v~yr   77 (194)
                      ||..++|..  ||+.+++|+.||||+.++++||+||++|++ +++.+..+++...+..+ .+..|+||+.++++++++||
T Consensus         1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~-d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r   79 (301)
T KOG2620|consen    1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVI-DKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR   79 (301)
T ss_pred             CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhh-hhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence            788888877  999999999999999999999999999998 55556666554444444 47999999999999999999


Q ss_pred             Ecccchhh--hcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCH
Q 029372           78 ALAEKASD--AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE  155 (194)
Q Consensus        78 V~d~~~~~--~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~  155 (194)
                      |.|  |.+  +.|.++||+.+|.+++++.+|+.+|++++|.++++|+.++..|.+++++.+..||+++...+|+||.||+
T Consensus        80 v~d--p~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~  157 (301)
T KOG2620|consen   80 VVD--PYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPP  157 (301)
T ss_pred             Eec--ccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCH
Confidence            997  666  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcceecccc
Q 029372          156 HVKRAMNEINAGMMCASFGIIVYFSH  181 (194)
Q Consensus       156 ~i~~a~~~~~~A~~~~~a~ii~A~~~  181 (194)
                      .+++||+++++|+|.++|.+.+++|+
T Consensus       158 ~V~~AM~~q~~AeR~krAailesEge  183 (301)
T KOG2620|consen  158 SVKRAMNMQNEAERMKRAAILESEGE  183 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999988875

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=1.4e-35  Score=248.43  Aligned_cols=174  Identities=15%  Similarity=0.175  Sum_probs=151.6

Q ss_pred             ceeEEEEecCCeeEEEeecCeeeeee-------CCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEE
Q 029372            3 QALGCIQVDQSTVAIKETFGKFDDVL-------EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV   74 (194)
Q Consensus         3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~l-------~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v   74 (194)
                      +++||++|+|||+||+++||++.++.       +||+||++||+ +++ +.+|+|.+.++.+. +++|+|++++.+++++
T Consensus        16 l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i-~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V   93 (317)
T TIGR01932        16 LFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI-EHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYI   93 (317)
T ss_pred             HHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccc-cEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEE
Confidence            46799999999999999999998664       79999999998 666 48999999999887 6999999999999999


Q ss_pred             EEEEcccchhhhccccc--C---hHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHH------------------------
Q 029372           75 QYRALAEKASDAFYKLS--N---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDI------------------------  124 (194)
Q Consensus        75 ~yrV~d~~~~~~~~~~~--~---~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l------------------------  124 (194)
                      +|||.|  |.++++++.  +   ++..|.+.+++++|+++|+++++++++ +|+++                        
T Consensus        94 ~yrV~d--~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~  171 (317)
T TIGR01932        94 RWRIED--FKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK  171 (317)
T ss_pred             EEEECC--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence            999996  888887654  3   467899999999999999999999995 45555                        


Q ss_pred             -----HHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhhhcceeccc
Q 029372          125 -----AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFS  180 (194)
Q Consensus       125 -----~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~  180 (194)
                           ...+.+.+.+.+.+|||.|+++.|+++.||+++++|+++++.|+|+++|...+++|
T Consensus       172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~eg  232 (317)
T TIGR01932       172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQG  232 (317)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 66888888999999999999999999999999999999999999876555544443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-33  Score=233.35  Aligned_cols=178  Identities=27%  Similarity=0.378  Sum_probs=165.7

Q ss_pred             ceeEEEEecCCeeEEEeecCeeeeeeC-CcceeecCc---cceeEeEeeeeEEEEeec-cC-ccccCCCcEEEEEEEEEE
Q 029372            3 QALGCIQVDQSTVAIKETFGKFDDVLE-PGCHCLPWC---LGSQVAGQLSLRVQQLDV-RC-ETKTKDNVFVNVVASVQY   76 (194)
Q Consensus         3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~l~-pGl~~~~P~---~~~~v~~~~~~r~~~~~~-~~-~v~TkD~~~v~v~~~v~y   76 (194)
                      +++++++|+|++.+++.+||++.+++. ||+||++||   +... ...++.+.+.++. ++ .+.|+|+..|.++++++|
T Consensus        17 ~~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~-~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~   95 (291)
T COG0330          17 LFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEV-VVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQY   95 (291)
T ss_pred             HHceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeee-eeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEE
Confidence            467899999999999999999999999 999999998   4333 2478888999999 66 599999999999999999


Q ss_pred             EEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHH-HHHHHHHHHHHHHhcccCeEEEEEEEeecCCCH
Q 029372           77 RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE  155 (194)
Q Consensus        77 rV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~-~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~  155 (194)
                      ||.|  |.++++++.+++..+.+.+++.+|+++|++++++++++|+ .++..+.+.|++.+++|||.|.+++|+++.||+
T Consensus        96 rv~d--~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~  173 (291)
T COG0330          96 RVTD--PQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPE  173 (291)
T ss_pred             EEcC--HHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCH
Confidence            9997  8899999999999999999999999999999999998888 999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcceecccccc
Q 029372          156 HVKRAMNEINAGMMCASFGIIVYFSHLT  183 (194)
Q Consensus       156 ~i~~a~~~~~~A~~~~~a~ii~A~~~~~  183 (194)
                      ++.+||+++|.|++++++.+.+|+|...
T Consensus       174 ev~~a~~~~~~Aer~~ra~i~~Ae~~~~  201 (291)
T COG0330         174 EVQAAMEKQMAAERDKRAEILEAEGEAQ  201 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHh
Confidence            9999999999999999999999998543

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=4.7e-33  Score=228.33  Aligned_cols=176  Identities=13%  Similarity=0.140  Sum_probs=150.3

Q ss_pred             ceeEEEEecCCeeEEEeecCeee-eeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEE-EEEEEEc
Q 029372            3 QALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVA-SVQYRAL   79 (194)
Q Consensus         3 ~~~~~~~V~~ge~~Vv~~~Gk~~-~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~-~v~yrV~   79 (194)
                      +++|+++|++|++||+++||++. .+++|||||++||+ +.+. .++++.++.+.+. .+.|+||..++++. .+.|+++
T Consensus         1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI-d~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivd   78 (280)
T cd03406           1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLI   78 (280)
T ss_pred             CCceEEEECCCeEEEEEECCcccccccCCceEEecCCc-eEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecC
Confidence            46799999999999999999985 57899999999998 6663 7999998888765 68999999999995 4666665


Q ss_pred             ccchhhhc--ccccChHHHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCC
Q 029372           80 AEKASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPD  154 (194)
Q Consensus        80 d~~~~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p  154 (194)
                      +......+  |+..+....|.+.+++++|+++|+++++++++ +|+++...+++.+++.+++|  ||.|.+|.|+++.||
T Consensus        79 p~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P  158 (280)
T cd03406          79 PDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIP  158 (280)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCC
Confidence            32222222  34456788999999999999999999999996 89999999999999999987  999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh--------hcceecccc
Q 029372          155 EHVKRAMNEINAGMMCAS--------FGIIVYFSH  181 (194)
Q Consensus       155 ~~i~~a~~~~~~A~~~~~--------a~ii~A~~~  181 (194)
                      +++.++| ++|.|||++.        |...+|+++
T Consensus       159 ~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~  192 (280)
T cd03406         159 EAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETE  192 (280)
T ss_pred             HHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHH
Confidence            9999998 6999999999        766666654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>smart00244 PHB prohibitin homologues

Probab=100.00  E-value=1e-32  Score=209.02  Aligned_cols=156  Identities=30%  Similarity=0.428  Sum_probs=145.4

Q ss_pred             eEEEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccch
Q 029372            5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA   83 (194)
Q Consensus         5 ~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~   83 (194)
                      +||++|+|||+||+++||+..++++||+||++||+ +.+ +.++++.+..+.+. .+.|+|++++.+++++.|||.|  |
T Consensus         1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d--~   76 (160)
T smart00244        1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFI-DRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLD--P   76 (160)
T ss_pred             CcEEEEcccEEEEEEecCccccccCCCEEEEecce-eEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEcc--H
Confidence            47999999999999999999999999999999998 555 48999999998877 6999999999999999999996  7


Q ss_pred             hhhcccccChH-HHHHHHHHHHHHHHccCCCHHHHHh-cHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHH
Q 029372           84 SDAFYKLSNTR-SQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM  161 (194)
Q Consensus        84 ~~~~~~~~~~~-~~l~~~~~~~lr~~i~~~~~~~l~~-~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~  161 (194)
                      .+++++..+++ ..|.+.+++++|+++++++++++++ +|+++++.+++.+++.+++||++++++.|+++.+|+++++|+
T Consensus        77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai  156 (160)
T smart00244       77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM  156 (160)
T ss_pred             HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence            78888877777 5899999999999999999999998 799999999999999999999999999999999999999999


Q ss_pred             HHH
Q 029372          162 NEI  164 (194)
Q Consensus       162 ~~~  164 (194)
                      +++
T Consensus       157 ~~k  159 (160)
T smart00244      157 EQQ  159 (160)
T ss_pred             Hhh
Confidence            875

prohibitin homologues

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=6e-34  Score=227.28  Aligned_cols=177  Identities=20%  Similarity=0.239  Sum_probs=169.1

Q ss_pred             ceeEEEEecCCeeEEEeecCeeee--eeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEc
Q 029372            3 QALGCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRAL   79 (194)
Q Consensus         3 ~~~~~~~V~~ge~~Vv~~~Gk~~~--~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~   79 (194)
                      +++|+++|++.|++|++|+|+...  .-+||+.|+.|++ +.. +++|+|++.+++|+ +++|||...+.|+++++|||.
T Consensus        51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCI-Dt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~  128 (288)
T KOG2621|consen   51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCI-DTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS  128 (288)
T ss_pred             HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEeccc-cee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence            578889999999999999999875  6799999999999 666 49999999999999 699999999999999999999


Q ss_pred             ccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHH
Q 029372           80 AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR  159 (194)
Q Consensus        80 d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~  159 (194)
                      |  |...+.+++|.....+-++++.||+++|+.++.|+++.|+.++.+++..|++....|||+|++|+|+||.+|.+.+.
T Consensus       129 d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr  206 (288)
T KOG2621|consen  129 D--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR  206 (288)
T ss_pred             C--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence            7  99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcceecccccc
Q 029372          160 AMNEINAGMMCASFGIIVYFSHLT  183 (194)
Q Consensus       160 a~~~~~~A~~~~~a~ii~A~~~~~  183 (194)
                      +|....+|.|++.|+++.|+|+.+
T Consensus       207 amaaeAeA~reA~Akviaaege~~  230 (288)
T KOG2621|consen  207 AMAAEAEATREARAKVIAAEGEKK  230 (288)
T ss_pred             hhhchhhhhhhhhhhHHHHHhhhH
Confidence            999999999999999999999864

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=100.00  E-value=8e-33  Score=212.98  Aligned_cols=170  Identities=27%  Similarity=0.394  Sum_probs=121.5

Q ss_pred             EEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC---ccccCCCcEEEEEEEEEEEEcccchh
Q 029372            8 IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC---ETKTKDNVFVNVVASVQYRALAEKAS   84 (194)
Q Consensus         8 ~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~---~v~TkD~~~v~v~~~v~yrV~d~~~~   84 (194)
                      ++|+||++||++++|+...+++||+||++||+ +.+ +.++++.+.++++.   .+.|+|+..+.+++.+.|+|.+  +.
T Consensus         1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~--~~   76 (179)
T PF01145_consen    1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI-QKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIED--PP   76 (179)
T ss_dssp             -------------------------------E-EE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CC
T ss_pred             CEeCCCEEEEEEECCeEeEEECCCeEEEeCCc-CeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEech--HH
Confidence            57999999999999999999999999998887 556 48999999999988   7999999999999999999965  66


Q ss_pred             hhcccc----cChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHH
Q 029372           85 DAFYKL----SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA  160 (194)
Q Consensus        85 ~~~~~~----~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a  160 (194)
                      .++.++    .+++..|++.++.++|++++++++++++++|.++.+.+++.|++.+++|||+|.++.|.++.+|+++.++
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~  156 (179)
T PF01145_consen   77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA  156 (179)
T ss_dssp             CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred             HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence            777666    6789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhcceecccc
Q 029372          161 MNEINAGMMCA-SFGIIVYFSH  181 (194)
Q Consensus       161 ~~~~~~A~~~~-~a~ii~A~~~  181 (194)
                      +++++.|++++ ++++.+|+++
T Consensus       157 i~~~~~a~~~~~~~~~~~a~~e  178 (179)
T PF01145_consen  157 IEEKQRAEQEAQQAEIERAEAE  178 (179)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999 8988888765

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.92  E-value=2e-24  Score=170.59  Aligned_cols=157  Identities=17%  Similarity=0.233  Sum_probs=132.9

Q ss_pred             eEEEEecCCeeEEEeecCeeeeeeCCcceeec----Cccc--------------eeEeEeeeeEEEEeec---cC----c
Q 029372            5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLP----WCLG--------------SQVAGQLSLRVQQLDV---RC----E   59 (194)
Q Consensus         5 ~~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~----P~~~--------------~~v~~~~~~r~~~~~~---~~----~   59 (194)
                      .|.++|++||+||++++|++.++++||.|+++    |++.              ..+ +.++++.+....   +.    .
T Consensus        14 ~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T cd03408          14 GSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFGR   92 (207)
T ss_pred             CCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeeee
Confidence            38899999999999999999999999999754    3321              113 367777766432   11    3


Q ss_pred             cccCCCcEEEEEEEEEEEEcccchhhhccccc---------ChHHHHHHHHHHHHHHHccCCCHHHHHhc--HHHHHHHH
Q 029372           60 TKTKDNVFVNVVASVQYRALAEKASDAFYKLS---------NTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAV  128 (194)
Q Consensus        60 v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~~~~~~~l~~~--R~~l~~~i  128 (194)
                      ..|+|++++.+++.+.|||.|  |.+++.++.         +....+.+.++.++|+++|++++++++.+  |+++++.+
T Consensus        93 ~~~~~~v~v~v~~~~~~kI~D--p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v  170 (207)
T cd03408          93 DSEFGGVPLRAFGTYSLKVTD--PVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV  170 (207)
T ss_pred             CCccceEEEEeeEEEEEEEcC--HHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence            567889999999999999996  888876552         35678999999999999999999999976  99999999


Q ss_pred             HHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHH
Q 029372          129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI  164 (194)
Q Consensus       129 ~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~  164 (194)
                      ++.+++.+++||++|.++.|+++.+|++++++++++
T Consensus       171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence            999999999999999999999999999999998864

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1e-23  Score=163.80  Aligned_cols=182  Identities=16%  Similarity=0.210  Sum_probs=157.1

Q ss_pred             CceeEEEEecCCeeEEEee-cCee-eeeeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEc
Q 029372            2 GQALGCIQVDQSTVAIKET-FGKF-DDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAL   79 (194)
Q Consensus         2 g~~~~~~~V~~ge~~Vv~~-~Gk~-~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~   79 (194)
                      |...++|.|+-||++++++ +|.. .+++..|.||.+|||+.-+  .+|.|-+...+++..-|+|.+.|+++..+.-|..
T Consensus        33 ~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pI--iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~  110 (290)
T KOG3090|consen   33 GVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPI--IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPM  110 (290)
T ss_pred             eecceeEeecCCceEEEEeccccchhccccCCceEeeeccccce--eeeeccCcccccCCCCCcceeEEEeeeEEecCCC
Confidence            3567899999999999995 5554 4789999999989985543  8999999999988999999999999999998887


Q ss_pred             ccchhhhccc--ccCh-HHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHH
Q 029372           80 AEKASDAFYK--LSNT-RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH  156 (194)
Q Consensus        80 d~~~~~~~~~--~~~~-~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~  156 (194)
                      .+ ....+|+  ..|+ ++.|.+++.+.|++++++++..+++++|+.++..|++.|.++..++.|.+++|.|++++|.++
T Consensus       111 ~~-~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e  189 (290)
T KOG3090|consen  111 AD-QLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE  189 (290)
T ss_pred             hh-hhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence            53 3444553  2465 678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--------------HHHHhhhhcceecccccccCc
Q 029372          157 VKRAMNEIN--------------AGMMCASFGIIVYFSHLTMYP  186 (194)
Q Consensus       157 i~~a~~~~~--------------~A~~~~~a~ii~A~~~~~~~~  186 (194)
                      +..|++++.              +|+|+++.++++|+|+.+-|.
T Consensus       190 fTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAq  233 (290)
T KOG3090|consen  190 FTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQ  233 (290)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHH
Confidence            999998864              566778888999999987654

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.2e-23  Score=163.33  Aligned_cols=180  Identities=15%  Similarity=0.198  Sum_probs=156.3

Q ss_pred             eEEEEecCCeeEEEee-c-CeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccc
Q 029372            5 LGCIQVDQSTVAIKET-F-GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEK   82 (194)
Q Consensus         5 ~~~~~V~~ge~~Vv~~-~-Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~   82 (194)
                      +++|.|+-|+++|++. | |....+.+.|-||++||.+.-  +.+|.|.+..+++...-|||-++|++...+.||... +
T Consensus        25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~--~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~-s  101 (271)
T KOG3083|consen   25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKP--IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVV-S  101 (271)
T ss_pred             hhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCc--EEEeccCCCcccccccCchhhhcccceEEEEecccc-c
Confidence            5789999999999995 5 666688999999999998443  489999998888888999999999999999999874 2


Q ss_pred             hhhhccc-c-cCh-HHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHH
Q 029372           83 ASDAFYK-L-SNT-RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR  159 (194)
Q Consensus        83 ~~~~~~~-~-~~~-~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~  159 (194)
                      -....|. + .|+ ++.|.++....|++++++++..+++++|+.++..+++.|.++.+.+|+.++++.++++++.++..+
T Consensus       102 qLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~  181 (271)
T KOG3083|consen  102 QLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTE  181 (271)
T ss_pred             ccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHH
Confidence            3344443 2 344 777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH--------------HHHHHhhhhcceecccccccCce
Q 029372          160 AMNEI--------------NAGMMCASFGIIVYFSHLTMYPS  187 (194)
Q Consensus       160 a~~~~--------------~~A~~~~~a~ii~A~~~~~~~~~  187 (194)
                      |++++              ++|+|+++|.+|+|+|+.+-|+-
T Consensus       182 AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~l  223 (271)
T KOG3083|consen  182 AVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAEL  223 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHH
Confidence            99874              57788899999999999876653

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.85  E-value=1.4e-20  Score=137.49  Aligned_cols=119  Identities=21%  Similarity=0.372  Sum_probs=103.1

Q ss_pred             eeeeEEEEeeccCccccCCCcEEEEEEEEEEEEcccchhhhcccc-cC-hHHHHHHHHHHHHHHHccCCCHHHHHh-cHH
Q 029372           46 QLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFE-QKN  122 (194)
Q Consensus        46 ~~~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~-~~-~~~~l~~~~~~~lr~~i~~~~~~~l~~-~R~  122 (194)
                      .+++|.++.+.+.+++|+||+.+.++++++|||.++++...+... .+ .++.|.+.+++++|+++|++++++++. +|+
T Consensus         2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~   81 (124)
T cd03400           2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK   81 (124)
T ss_pred             cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence            467888887777789999999999999999999863322222232 23 456799999999999999999999995 899


Q ss_pred             HHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHH
Q 029372          123 DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI  164 (194)
Q Consensus       123 ~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~  164 (194)
                      ++++.+.+.+++.+++||+.|+++.|+++.||+++.+|++++
T Consensus        82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999875

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.83  E-value=4.4e-20  Score=135.66  Aligned_cols=115  Identities=22%  Similarity=0.300  Sum_probs=101.9

Q ss_pred             eeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhccc---------ccChHHHHHHHHHHHHHHHccCCCHHH
Q 029372           47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYK---------LSNTRSQIQAYVFDVIRASVPKLDLDA  116 (194)
Q Consensus        47 ~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~---------~~~~~~~l~~~~~~~lr~~i~~~~~~~  116 (194)
                      +++|.+.+++++ +++|+|++++.++++++|||.|  |.+++..         ..+.++.+.+.+++++|+++|++++++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e   79 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGG--TEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE   79 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            578899999988 6999999999999999999997  4444321         133578899999999999999999999


Q ss_pred             HHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHH
Q 029372          117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE  163 (194)
Q Consensus       117 l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~  163 (194)
                      ++++|++|.+++.+.++..+++||++|.++.|+++.+|+++.+++.+
T Consensus        80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~  126 (128)
T cd03399          80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD  126 (128)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence            99999999999999999999999999999999999999998877643

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.75  E-value=5.2e-17  Score=116.52  Aligned_cols=113  Identities=36%  Similarity=0.563  Sum_probs=99.7

Q ss_pred             EEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccCh--HHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHH
Q 029372           51 VQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNT--RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA  127 (194)
Q Consensus        51 ~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~--~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~  127 (194)
                      ..+.+.+. .+.|+|+.++.+++++.|+|.|  |..+++.....  ...+.+.+..++|+++++++++++.++|+++++.
T Consensus         6 ~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~   83 (121)
T cd02106           6 RQTLDVPPQEVLTKDNVPVRVDAVVQYRVVD--PVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE   83 (121)
T ss_pred             eEEecCCCceEEecCCCEEEEEEEEEEEEeC--HHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence            33444444 6999999999999999999997  55566655444  4799999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 029372          128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN  165 (194)
Q Consensus       128 i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~  165 (194)
                      +++.++..+++||+++.++.|+++.+|+++.+++++++
T Consensus        84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~~  121 (121)
T cd02106          84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDRQ  121 (121)
T ss_pred             HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhhC
Confidence            99999999999999999999999999999999998753

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.65  E-value=3.3e-15  Score=130.84  Aligned_cols=174  Identities=17%  Similarity=0.160  Sum_probs=139.0

Q ss_pred             EEEEecCCeeEEEeec---------CeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEE
Q 029372            6 GCIQVDQSTVAIKETF---------GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ   75 (194)
Q Consensus         6 ~~~~V~~ge~~Vv~~~---------Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~   75 (194)
                      .||.+.+...++|..+         |.-.+++-+|+||++|+| +.. +..++++..+++.. .+.|+||.++++++..+
T Consensus        33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~-q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~  110 (548)
T COG2268          33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF-QTI-ERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY  110 (548)
T ss_pred             eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecce-eee-EEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence            5665544444554444         555689999999999998 444 48899988888884 79999999999999999


Q ss_pred             EEEccc--chhhhcccc--c----ChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEE
Q 029372           76 YRALAE--KASDAFYKL--S----NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTL  147 (194)
Q Consensus        76 yrV~d~--~~~~~~~~~--~----~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~  147 (194)
                      -+|.|+  +...+.-++  .    +.+..+...+++++|.+++++|+.+++++|..|++.+.+.....+.+.|+.++++.
T Consensus       111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~  190 (548)
T COG2268         111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA  190 (548)
T ss_pred             EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence            999973  233333222  1    34667888999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCC-------HHHHHHHHHHHHHHHhhhhcceecccc
Q 029372          148 IVDIEPD-------EHVKRAMNEINAGMMCASFGIIVYFSH  181 (194)
Q Consensus       148 i~~i~~p-------~~i~~a~~~~~~A~~~~~a~ii~A~~~  181 (194)
                      |.|+..+       ..|.+|...+..++-.+.+.+..++..
T Consensus       191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~  231 (548)
T COG2268         191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAE  231 (548)
T ss_pred             ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhh
Confidence            9999998       888888887776666666665555443

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.63  E-value=6.7e-15  Score=121.28  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=144.0

Q ss_pred             EEEecCCeeEEEeecCeeeeeeCCcceeecCccceeEeEeeeeEEEEeeccCc-cccCCCcEEEEEEEEEEEEcccchhh
Q 029372            7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCE-TKTKDNVFVNVVASVQYRALAEKASD   85 (194)
Q Consensus         7 ~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~~-v~TkD~~~v~v~~~v~yrV~d~~~~~   85 (194)
                      |++-++++..++..+|.....+-+|.+.++|   +.+. .+|+...++++.++ +.|..|+++.|.+.+.-+|..+++..
T Consensus         2 f~~~~~~~~l~itg~g~~~~~lv~~~wvf~w---q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    2 FKVAGASQYLAITGGGIEDIKLVKKSWVFPW---QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             CccCCccceEEeecccccCceecccceeeee---eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            4566889999999999877777777755544   4454 89999999999986 99999999999999988887544433


Q ss_pred             hc-cc--------ccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCH-
Q 029372           86 AF-YK--------LSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE-  155 (194)
Q Consensus        86 ~~-~~--------~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~-  155 (194)
                      .+ +.        ..+....+...++++.|.++|+|+++++|.+|.+|+..+.+.....+..+||.|.+.+|+|+...+ 
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g  157 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG  157 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence            21 11        123456777889999999999999999999999999999999999999999999999999999766 


Q ss_pred             -HHHHHHHHHHHHHHhhhhcceeccccc
Q 029372          156 -HVKRAMNEINAGMMCASFGIIVYFSHL  182 (194)
Q Consensus       156 -~i~~a~~~~~~A~~~~~a~ii~A~~~~  182 (194)
                       +|..++.+...|+-+++|+|-.|++.-
T Consensus       158 ~~YlssLGka~taev~rdArIgvAEAk~  185 (428)
T KOG2668|consen  158 HEYLSSLGKATTAEVARDARIGVAEAKR  185 (428)
T ss_pred             hHHHHHhhhHHHHHHHhhcccchHHhhh
Confidence             799999999999999999998887653

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.59  E-value=8.1e-15  Score=114.97  Aligned_cols=156  Identities=13%  Similarity=0.212  Sum_probs=119.1

Q ss_pred             eeEEEEecCCeeEEEeecCeee-eeeCCcceeecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEE--EEEEEEc
Q 029372            4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVA--SVQYRAL   79 (194)
Q Consensus         4 ~~~~~~V~~ge~~Vv~~~Gk~~-~~l~pGl~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~--~v~yrV~   79 (194)
                      +++++.|++|++||.+|.|... .+.+||+|+..||+ ..+. .+-+..|+=++.. .|-|+.|+.+..+-  +++|-..
T Consensus        20 ~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi-Tt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~   97 (322)
T KOG2962|consen   20 SSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRP   97 (322)
T ss_pred             HHHHhhcccCceEEEEecceeeeccCCCCcEEEeeee-ecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhch
Confidence            4567899999999999999976 66899999999998 5453 5555556655555 58999998877641  1122111


Q ss_pred             ccchhhhcccc-cCh-HHHHHHHHHHHHHHHccCCCHHHHH-hcHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCC
Q 029372           80 AEKASDAFYKL-SNT-RSQIQAYVFDVIRASVPKLDLDATF-EQKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPD  154 (194)
Q Consensus        80 d~~~~~~~~~~-~~~-~~~l~~~~~~~lr~~i~~~~~~~l~-~~R~~l~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~p  154 (194)
                      | ..+..+.++ .|+ ..+|.+-+...+.+.|+..++.+++ .--+++.+.++++|++.+..+  |+.|.+|.++....|
T Consensus        98 d-~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIP  176 (322)
T KOG2962|consen   98 D-AVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIP  176 (322)
T ss_pred             h-HHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCCh
Confidence            1 122222222 233 5678888999999999999999999 678999999999999999887  999999999999999


Q ss_pred             HHHHHHHH
Q 029372          155 EHVKRAMN  162 (194)
Q Consensus       155 ~~i~~a~~  162 (194)
                      ..++..++
T Consensus       177 EaiRrN~E  184 (322)
T KOG2962|consen  177 EAIRRNFE  184 (322)
T ss_pred             HHHHHhHH
Confidence            99876554

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.58  E-value=5.2e-13  Score=105.94  Aligned_cols=157  Identities=19%  Similarity=0.257  Sum_probs=122.2

Q ss_pred             EEEEecCCeeEEEeecCeeeeeeCCcceee----cCcc--------------ceeEeEeeeeEEEE---eeccCcc--cc
Q 029372            6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCL----PWCL--------------GSQVAGQLSLRVQQ---LDVRCET--KT   62 (194)
Q Consensus         6 ~~~~V~~ge~~Vv~~~Gk~~~~l~pGl~~~----~P~~--------------~~~v~~~~~~r~~~---~~~~~~v--~T   62 (194)
                      |-.+|++||.||.++-|+...+.+||.|-+    .|++              ...| |.++++...   +-.+..+  ..
T Consensus        15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eV-yFvn~~~~~~~kwGT~~pi~~~D   93 (211)
T PF13421_consen   15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEV-YFVNTKEITNIKWGTPNPIPYRD   93 (211)
T ss_pred             CEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEE-EEEECeEecCCccCCCCCeeecC
Confidence            778999999999999999989999999986    3333              1223 577776643   2222222  22


Q ss_pred             CC--CcEEEEEEEEEEEEcccchhhhcccc---------cChHHHHHHHHHHHHHHHcc--CCCHHHHHhcHHHHHHHHH
Q 029372           63 KD--NVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVP--KLDLDATFEQKNDIAKAVE  129 (194)
Q Consensus        63 kD--~~~v~v~~~v~yrV~d~~~~~~~~~~---------~~~~~~l~~~~~~~lr~~i~--~~~~~~l~~~R~~l~~~i~  129 (194)
                      .+  .+++...+.+.|||.|  |..++.++         ++..+.+++.+...+-+.++  +.++.++-++-.+|++.++
T Consensus        94 ~~~~~v~lra~G~ys~rI~D--p~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~  171 (211)
T PF13421_consen   94 PEYGPVRLRAFGTYSFRIVD--PVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK  171 (211)
T ss_pred             CCCCcEEEEEEEEEEEEEeC--HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            22  3577889999999997  88876543         23356677777777777775  4788999999999999999


Q ss_pred             HHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 029372          130 EELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN  165 (194)
Q Consensus       130 ~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~  165 (194)
                      +.|+..++.||+++.++.|.+|.+|++.+++++++.
T Consensus       172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~  207 (211)
T PF13421_consen  172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA  207 (211)
T ss_pred             HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence            999999999999999999999999999999998854

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=99.12  E-value=5.4e-09  Score=84.62  Aligned_cols=156  Identities=11%  Similarity=0.127  Sum_probs=118.7

Q ss_pred             EEEEecCCeeEEEeecCeeeeeeC-Ccceee-------------------cCccceeEeEeeeeEEEE-eeccC----cc
Q 029372            6 GCIQVDQSTVAIKETFGKFDDVLE-PGCHCL-------------------PWCLGSQVAGQLSLRVQQ-LDVRC----ET   60 (194)
Q Consensus         6 ~~~~V~~ge~~Vv~~~Gk~~~~l~-pGl~~~-------------------~P~~~~~v~~~~~~r~~~-~~~~~----~v   60 (194)
                      |..+|.|++-++...-|+...+.. +|.+-+                   .|+- +.| |.++++.+. +.+-.    .+
T Consensus        40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k-~eV-yfvntqe~~girwGT~qpin~  117 (345)
T COG4260          40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFK-QEV-YFVNTQEIKGIRWGTPQPINY  117 (345)
T ss_pred             cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCccc-ceE-EEEecceecceecCCCCCeec
Confidence            778999999999999999887764 775432                   2332 334 678887765 33321    23


Q ss_pred             cc-CC--CcEEEEEEEEEEEEcccchhhhcc---------cccChHHHHHHHHHHHHHHHccCC--CHHHHHhcHHHHHH
Q 029372           61 KT-KD--NVFVNVVASVQYRALAEKASDAFY---------KLSNTRSQIQAYVFDVIRASVPKL--DLDATFEQKNDIAK  126 (194)
Q Consensus        61 ~T-kD--~~~v~v~~~v~yrV~d~~~~~~~~---------~~~~~~~~l~~~~~~~lr~~i~~~--~~~~l~~~R~~l~~  126 (194)
                      .. ++  ...++...++.|+|.|  |..++-         .++|.++++-+.+..+|...++++  ++..|-++.-+|++
T Consensus       118 ~dn~~~g~l~lRa~Gtys~kvtD--pi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk  195 (345)
T COG4260         118 FDNFYNGELFLRAHGTYSIKVTD--PILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSK  195 (345)
T ss_pred             ccccccceeEEeecceEEEEecC--HHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHH
Confidence            33 34  3466778999999997  777643         234556777788888888877765  44466689999999


Q ss_pred             HHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 029372          127 AVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN  165 (194)
Q Consensus       127 ~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~  165 (194)
                      .+.+.|.+.+..+|..|+++.|-+|++|.+.++.+++++
T Consensus       196 ~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~  234 (345)
T COG4260         196 YMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN  234 (345)
T ss_pred             HHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence            999999999999999999999999999999999999864

>PTZ00491 major vault protein; Provisional

Probab=97.63  E-value=0.002  Score=59.90  Aligned_cols=173  Identities=16%  Similarity=0.123  Sum_probs=113.7

Q ss_pred             EEecCCeeEEEeec--CeeeeeeCCcceeecCccceeEeEeeeeEE---------EE--eec-c---C---ccccCCCcE
Q 029372            8 IQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLRV---------QQ--LDV-R---C---ETKTKDNVF   67 (194)
Q Consensus         8 ~~V~~ge~~Vv~~~--Gk~~~~l~pGl~~~~P~~~~~v~~~~~~r~---------~~--~~~-~---~---~v~TkD~~~   67 (194)
                      |.||.+.+.=+|.+  ++..-+++|-+.++-|-  +... .+++..         +.  +.+ |   .   .+-|+|...
T Consensus       465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr  541 (850)
T PTZ00491        465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR  541 (850)
T ss_pred             EEcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence            56777776667665  55445689999999884  2221 333211         11  111 1   1   478999999


Q ss_pred             EEEEEEEEEEEc--ccchh--hhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcH-HHHHHHHHHH------HHH--
Q 029372           68 VNVVASVQYRAL--AEKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQK-NDIAKAVEEE------LEK--  134 (194)
Q Consensus        68 v~v~~~v~yrV~--d~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R-~~l~~~i~~~------l~~--  134 (194)
                      +.+..+++|+-.  +.||.  ...|++.|+-...=..+.+-+|..+++.++++++.+= .-+-+.+...      .+.  
T Consensus       542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l  621 (850)
T PTZ00491        542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL  621 (850)
T ss_pred             EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence            999999998887  22353  5678899987777788888899999999999998532 2233333321      111  


Q ss_pred             HhcccCeEEEEEEEeecCC-CHHHHHHHHH-------------HHHHHHhhhhcceecccccc
Q 029372          135 AMSHYGYEIVQTLIVDIEP-DEHVKRAMNE-------------INAGMMCASFGIIVYFSHLT  183 (194)
Q Consensus       135 ~~~~~Gi~v~~v~i~~i~~-p~~i~~a~~~-------------~~~A~~~~~a~ii~A~~~~~  183 (194)
                      .+...|+.|.+|.|+++.| +..+++++++             .+.|++++++.-.+|.|+++
T Consensus       622 ~F~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Le  684 (850)
T PTZ00491        622 RFPANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLE  684 (850)
T ss_pred             EEccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhH
Confidence            2466699999999999997 4555665544             34555666666666776653

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=96.73  E-value=0.011  Score=48.25  Aligned_cols=102  Identities=21%  Similarity=0.252  Sum_probs=71.5

Q ss_pred             eEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHH
Q 029372           49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA  127 (194)
Q Consensus        49 ~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~  127 (194)
                      .....++.|. ....|||..+.+.+.+..|-+   . .-+......+..+.+.-++.+..+=+.-+..+++++-+.+++.
T Consensus       122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i-~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~  197 (316)
T PF12127_consen  122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---I-DRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKT  197 (316)
T ss_pred             cCCeeecCcchhhhhcCCeEEEEEEEEEEEec---H-HHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHH
Confidence            3344455555 567899999888888877765   2 2333434455666666666666665666888999999999988


Q ss_pred             HHHHHHHHhcc-cCeEEEEEEEeecCCCHHH
Q 029372          128 VEEELEKAMSH-YGYEIVQTLIVDIEPDEHV  157 (194)
Q Consensus       128 i~~~l~~~~~~-~Gi~v~~v~i~~i~~p~~i  157 (194)
                      +.+.   -++. --+++.|+.|-|++.-+++
T Consensus       198 VL~k---gLDagTAFeIlSIDIaDidVG~NI  225 (316)
T PF12127_consen  198 VLEK---GLDAGTAFEILSIDIADIDVGENI  225 (316)
T ss_pred             HHhh---CCCcCceeEEEEeeeeccccchhh
Confidence            8655   3332 2499999999999998775

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=95.15  E-value=0.033  Score=45.46  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             eEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHH
Q 029372           49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA  127 (194)
Q Consensus        49 ~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~  127 (194)
                      +....++.|. ....|||..+.+.+.+..|-+   ..+ +.....-+..+.+.-++.+..+=+.-+..+++++-+.+++.
T Consensus       127 VnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~  202 (316)
T PRK13665        127 VNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKT  202 (316)
T ss_pred             cCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHH-HhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHH
Confidence            3344455555 567899988888777776644   222 22222334444455555555555556788999999999976


Q ss_pred             HHHHHHHHhcc-cCeEEEEEEEeecCCCHHH
Q 029372          128 VEEELEKAMSH-YGYEIVQTLIVDIEPDEHV  157 (194)
Q Consensus       128 i~~~l~~~~~~-~Gi~v~~v~i~~i~~p~~i  157 (194)
                      +.+.   -++. --+++.|+.|-|++..+++
T Consensus       203 VL~k---GLDagTAFeIlSIDIADvdVG~NI  230 (316)
T PRK13665        203 VLSK---GLDAGTAFEILSIDIADVDVGKNI  230 (316)
T ss_pred             HHhc---cCCcCceeEEEEEeeeccccchhh
Confidence            6443   3543 2499999999999998775

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=95.11  E-value=0.22  Score=35.70  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=63.2

Q ss_pred             ccccCCCcEEEEEEEEEEEEcc--cchh--hhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHH-HHHHH-----
Q 029372           59 ETKTKDNVFVNVVASVQYRALA--EKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKND-IAKAV-----  128 (194)
Q Consensus        59 ~v~TkD~~~v~v~~~v~yrV~d--~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~-l~~~i-----  128 (194)
                      .+-|+|...+.+..+++|+-.-  .++.  ...+++.|+-.-.=..+.+-+|..+++.+.++.+.+=.. +.+.+     
T Consensus        10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~   89 (118)
T PF11978_consen   10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE   89 (118)
T ss_dssp             EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred             EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence            4679999999999998888763  1233  457888898776667777888999999999998853222 11111     


Q ss_pred             HHHHHH--HhcccCeEEEEEEEeecCC
Q 029372          129 EEELEK--AMSHYGYEIVQTLIVDIEP  153 (194)
Q Consensus       129 ~~~l~~--~~~~~Gi~v~~v~i~~i~~  153 (194)
                      ...++.  .+..-|+.|.+|.|+++.|
T Consensus        90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp  116 (118)
T PF11978_consen   90 NGEVRDGLRFPANNLVITSVDVQSVEP  116 (118)
T ss_dssp             -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred             CCCccceeEEcCCCeEEEEEeeeEecc
Confidence            111121  2455699999999999875

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=94.85  E-value=0.36  Score=36.67  Aligned_cols=80  Identities=6%  Similarity=0.041  Sum_probs=61.8

Q ss_pred             CcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHh--cHHHHHHHHHHHHHHHhcccCeE
Q 029372           65 NVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYE  142 (194)
Q Consensus        65 ~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~--~R~~l~~~i~~~l~~~~~~~Gi~  142 (194)
                      +...-+.+.+.|++.|+.....+      ++ =.+.+++++...+++.+.+++.+  .+++|-+++++.+|..+..=+ .
T Consensus        76 ~~~~~v~i~i~l~~~n~~~~~el------~~-~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~  147 (159)
T COG1580          76 PKDRYVKIAITLEVANKALLEEL------EE-KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V  147 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHHHHHH------HH-hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence            55667888899999873211111      11 23678899999999999999994  899999999999999997744 8


Q ss_pred             EEEEEEeecC
Q 029372          143 IVQTLIVDIE  152 (194)
Q Consensus       143 v~~v~i~~i~  152 (194)
                      |++|.++++.
T Consensus       148 V~dV~fT~fi  157 (159)
T COG1580         148 VKDVLFTNFI  157 (159)
T ss_pred             eEEEeeehhh
Confidence            8999888764

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=91.45  E-value=1.1  Score=30.66  Aligned_cols=51  Identities=12%  Similarity=0.216  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372           99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI  151 (194)
Q Consensus        99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i  151 (194)
                      +.++..+...+++++.+++.  ..+..+.+++++.+++.+.+  -.|.+|.++++
T Consensus        44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f   96 (99)
T PF03748_consen   44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF   96 (99)
T ss_pred             HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence            56788888889999999999  58999999999999998854  34888888775

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=90.21  E-value=1.1  Score=33.24  Aligned_cols=51  Identities=12%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372           99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI  151 (194)
Q Consensus        99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i  151 (194)
                      +.++..+-..+++.+.+|+-  +.++.+.+++++.+|..+.+ | .|.+|.++++
T Consensus        87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f  139 (142)
T PRK07718         87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF  139 (142)
T ss_pred             hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence            46777888888999999998  48999999999999998876 5 6888888875

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=88.05  E-value=6.5  Score=30.50  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=56.4

Q ss_pred             cccCCC--cEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHHHHHHHHHHHHHhc
Q 029372           60 TKTKDN--VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMS  137 (194)
Q Consensus        60 v~TkD~--~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l~~~i~~~l~~~~~  137 (194)
                      +.+.|.  ....+..++.|...+++   ..-   ..+ .=.+.++..+...+++.+.+|+. .+.+|.+++++.+|..+.
T Consensus        93 vNLaD~~~~r~~vki~l~~e~~d~~---l~~---EL~-~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~  164 (181)
T PRK06654         93 GNTADTPPKTFVVKLALGYAENNKN---ILN---ELG-RRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILR  164 (181)
T ss_pred             EEcCCCCCceEEEEEEEEEEcCCHH---HHH---HHH-hccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcC
Confidence            344443  44456667777665421   110   111 12356788888899999999999 889999999999999887


Q ss_pred             ccCeEEEEEEEeecC
Q 029372          138 HYGYEIVQTLIVDIE  152 (194)
Q Consensus       138 ~~Gi~v~~v~i~~i~  152 (194)
                      +  =.|.+|.++++.
T Consensus       165 ~--GkV~~VYFTeFv  177 (181)
T PRK06654        165 N--GEIKDIAFTQID  177 (181)
T ss_pred             C--CceEEEEEEEEE
Confidence            5  347777777654

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=87.29  E-value=2.2  Score=31.61  Aligned_cols=53  Identities=9%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhccc-C-eEEEEEEEeec
Q 029372           99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI  151 (194)
Q Consensus        99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~-G-i~v~~v~i~~i  151 (194)
                      +.++..+-..+++.+.+++.  +.|+.|.+++++.++..+++- | -.|++|.++++
T Consensus        78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            66788888899999999998  599999999999999999653 3 35888888876

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=84.80  E-value=3.7  Score=31.11  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccC--eEEEEEEEeec
Q 029372           99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYG--YEIVQTLIVDI  151 (194)
Q Consensus        99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~G--i~v~~v~i~~i  151 (194)
                      +.+++.+-..+++.+.+++.  +.+..|.+++++.+++.+..-+  -.|++|.++++
T Consensus       103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            45777778888999999998  4899999999999999886532  46888888876

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=84.50  E-value=3.8  Score=31.78  Aligned_cols=52  Identities=13%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372           98 QAYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI  151 (194)
Q Consensus        98 ~~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i  151 (194)
                      .+.++.++-..+++.+.+|+.  ..+..|.+++.+.+|..+.+ | .|.+|.++++
T Consensus       126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F  179 (182)
T PRK08455        126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF  179 (182)
T ss_pred             hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence            466888888899999999999  47999999999999999976 4 5888888876

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=84.02  E-value=4  Score=31.15  Aligned_cols=51  Identities=10%  Similarity=0.133  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 029372           99 AYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI  151 (194)
Q Consensus        99 ~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i  151 (194)
                      +.++..+-..+++.+.+|+.  +.+..|.+++.+.+|..+.+ | .|++|.++++
T Consensus       111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~-~-~V~~VlFt~F  163 (166)
T PRK12785        111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAP-A-QVNAVLFKEV  163 (166)
T ss_pred             hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCC-C-ceeEEEEEee
Confidence            56777777888999999998  47999999999999998875 3 4888888876

>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=82.45  E-value=4.7  Score=30.78  Aligned_cols=54  Identities=7%  Similarity=0.162  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHccCCCHHHHH--hcHHHHHHHHHHHHHHHhccc-C-eEEEEEEEeec
Q 029372           98 QAYVFDVIRASVPKLDLDATF--EQKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI  151 (194)
Q Consensus        98 ~~~~~~~lr~~i~~~~~~~l~--~~R~~l~~~i~~~l~~~~~~~-G-i~v~~v~i~~i  151 (194)
                      .+.+++.+-.++++.+.+++.  ..++.|.+++.+.++..+++. | -.|++|.++++
T Consensus       110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f  167 (170)
T PRK05696        110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF  167 (170)
T ss_pred             hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence            456888888999999999998  489999999999998887654 4 36888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	2e-13
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	4e-08
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	5e-08
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	3e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 40  GSQVAGQLSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAFYK---LSNTRS 95
                 ++SL +  L  RCE  +T + V + V    Q + + EK   A      L     
Sbjct: 3   SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQ 62

Query: 96  QIQAYVFDVI----RASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151
            I+  V   +    R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+
Sbjct: 63  DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122

Query: 152 EPDEHVKRAM 161
                   ++
Sbjct: 123 YDKVDYLSSL 132

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 48  SLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIR 106
            LR Q LDV   ET TKDNV V V A V +R +      A  ++ N            +R
Sbjct: 10  DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQVKNYIMATSQISQTTLR 67

Query: 107 ASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161
           + + +  LD    +++ +   ++  +++A   +G ++    I D+E    +++AM
Sbjct: 68  SVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM 122

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 48  SLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIR 106
            +R    D+   E  TKD+V ++V   V YR     A+ A   ++N  S  +      +R
Sbjct: 15  DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVANITNADSATRLLAQTTLR 72

Query: 107 ASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMN 162
            ++   +L      + +IA  ++  L+ A   +G ++ +  I D++    ++RAM 
Sbjct: 73  NALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMA 128

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 44  AGQLSLRVQQLDV-RCETKTKDNVFVNVVASVQYRAL-AEKASDAFYKLSNTRSQIQAYV 101
           +  + LR   +DV   E   KDNV V V A V Y+ +   KA    Y +S+    I    
Sbjct: 2   SDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAV---YNVSDFLMAIVKLA 58

Query: 102 FDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEP 153
              +RA + +++LD T   ++ I   + EEL+K    +G +I +  I  I+P
Sbjct: 59  QTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDP 110

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 9/39 (23%)

Query: 81  EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE 119
           EK +    KL    + ++ Y  D    S P L + AT E
Sbjct: 18  EKQA--LKKLQ---ASLKLYADD----SAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.96
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.96
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.92
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.9
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	97.92

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.96  E-value=5.8e-30  Score=188.51  Aligned_cols=130  Identities=22%  Similarity=0.304  Sum_probs=106.2

Q ss_pred             eecCccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCC
Q 029372           34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL  112 (194)
Q Consensus        34 ~~~P~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~  112 (194)
                      +..||+ +++. ++|+|.+++++++ +++|+|++.+.|++.++|||.|  |.+|++++.|++..+.++++++||+++|++
T Consensus         3 l~~P~i-d~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPST-DSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCce-eEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            567998 6674 8999999999998 6999999999999999999997  999999999999999999999999999999


Q ss_pred             CHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHH
Q 029372          113 DLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAG  167 (194)
Q Consensus       113 ~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A  167 (194)
                      ++++++++|++++.++++.+++.+++|||+|.+++|+++.||+++++||+++++|
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A  133 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA  133 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999988776

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.96  E-value=7.1e-30  Score=198.29  Aligned_cols=142  Identities=22%  Similarity=0.261  Sum_probs=135.1

Q ss_pred             ccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHH
Q 029372           38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDA  116 (194)
Q Consensus        38 ~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~  116 (194)
                      |+ +++ ..+|+|.+++++++ +++|+|+++|.++++++|||.|  |.++++++.|+...+.+++++++|+++|++++++
T Consensus         2 fi-~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IF-EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CE-EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ce-EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            44 556 48999999999988 6999999999999999999997  8899999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHhhhhcceecccccc
Q 029372          117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMCASFGIIVYFSHLT  183 (194)
Q Consensus       117 l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~~~a~ii~A~~~~~  183 (194)
                      ++++|++++..+++.+++.+++|||.|+++.|+++.||+++.+||+++++|+++++|++++|+|+.+
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~  144 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQ  144 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999865

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.92  E-value=4.7e-26  Score=169.55  Aligned_cols=130  Identities=16%  Similarity=0.242  Sum_probs=113.7

Q ss_pred             ccceeEeEeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhccccc--------ChHHHHHHHHHHHHHHH
Q 029372           38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLS--------NTRSQIQAYVFDVIRAS  108 (194)
Q Consensus        38 ~~~~~v~~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~--------~~~~~l~~~~~~~lr~~  108 (194)
                      |+ +.+. .+|+|++++++++ +++|+|+.++.|++.++|||.| +|.++.+...        +.+..+.++++++||++
T Consensus         3 ~i-~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~v   79 (143)
T 1win_A            3 SG-SSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSI   79 (143)
T ss_dssp             CC-CCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-eEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            45 5564 8999999999998 5999999999999999999985 2665544332        23567889999999999


Q ss_pred             ccCCCHHHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHh
Q 029372          109 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGMMC  170 (194)
Q Consensus       109 i~~~~~~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~~~  170 (194)
                      +|++++++++++|++|+..+.+.+++.+++|||+|.+++|+|+.+|+++++||+++++|+..
T Consensus        80 iG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~~  141 (143)
T 1win_A           80 LGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS  141 (143)
T ss_dssp             HHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCC
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999887766643

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.90  E-value=6e-24  Score=151.85  Aligned_cols=109  Identities=30%  Similarity=0.440  Sum_probs=105.2

Q ss_pred             eeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHH
Q 029372           46 QLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI  124 (194)
Q Consensus        46 ~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l  124 (194)
                      .+|+|.+.+++++ +++|+|++.+.+++.++|||.|  |.++++++.|++..+.+.+++++|+++|++++++++++|+++
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i   81 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII   81 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence            6899999999998 7999999999999999999997  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCeEEEEEEEeecCCCHH
Q 029372          125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH  156 (194)
Q Consensus       125 ~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~  156 (194)
                      ++.+++.+++.+++|||+|.++.|+++.||++
T Consensus        82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           82 NARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            99999999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=97.92  E-value=0.00027  Score=64.38  Aligned_cols=154  Identities=14%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             EEecCCeeEEEeec--CeeeeeeCCcceeecCccceeEeEeee---------eEEEEeeccC-------ccccCCCcEEE
Q 029372            8 IQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLS---------LRVQQLDVRC-------ETKTKDNVFVN   69 (194)
Q Consensus         8 ~~V~~ge~~Vv~~~--Gk~~~~l~pGl~~~~P~~~~~v~~~~~---------~r~~~~~~~~-------~v~TkD~~~v~   69 (194)
                      |.||.+.+.-++.+  |+..-+++|-+.++-|- ++.....+|         .+.-.+.+.+       .+-|+|...+.
T Consensus       460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~  538 (861)
T 2zuo_A          460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQ  538 (861)
T ss_dssp             EECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEE
T ss_pred             EEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEE
Confidence            56888888888886  55445689999888774 222211222         1111222221       57899999999


Q ss_pred             EEEEEEEEEc--c-cchh--hhcccccChHHHHHHHHHHHHHHHccCCCHHHHHhcHHHH-HHHHHH-------------
Q 029372           70 VVASVQYRAL--A-EKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI-AKAVEE-------------  130 (194)
Q Consensus        70 v~~~v~yrV~--d-~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~l-~~~i~~-------------  130 (194)
                      +..+++|+..  | .|+.  ..+|++.|+-.-.=..+.+-+|..+++.++++++.+=..+ -..+.-             
T Consensus       539 L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~  618 (861)
T 2zuo_A          539 LQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTL  618 (861)
T ss_dssp             EEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred             EEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccccccc
Confidence            9999999885  2 1233  5678889987777788888999999999999998653333 111100             


Q ss_pred             --HHH--HHhcccCeEEEEEEEeecCC-CHHHHHHHH
Q 029372          131 --ELE--KAMSHYGYEIVQTLIVDIEP-DEHVKRAMN  162 (194)
Q Consensus       131 --~l~--~~~~~~Gi~v~~v~i~~i~~-p~~i~~a~~  162 (194)
                        ..+  -.+...|+.|.+|.|+++.| +..+.++++
T Consensus       619 ~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq  655 (861)
T 2zuo_A          619 LPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ  655 (861)
T ss_dssp             --CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred             ccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence              001  12455699999999999997 444555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	3e-19

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (191), Expect = 3e-19
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 47  LSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAF-------YKLSNTRSQIQ 98
           +SL +  L  RCE  +T + V + V    Q + + EK   A          + + ++ + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 99  AYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVK 158
             +   +R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+       
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 159 RAMNEINA 166
            ++ +   
Sbjct: 130 SSLGKTQT 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.88

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.8e-24  Score=157.39  Aligned_cols=122  Identities=16%  Similarity=0.313  Sum_probs=110.5

Q ss_pred             EeeeeEEEEeeccC-ccccCCCcEEEEEEEEEEEEcccchhhhc---------ccccChHHHHHHHHHHHHHHHccCCCH
Q 029372           45 GQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAF---------YKLSNTRSQIQAYVFDVIRASVPKLDL  114 (194)
Q Consensus        45 ~~~~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrV~d~~~~~~~---------~~~~~~~~~l~~~~~~~lr~~i~~~~~  114 (194)
                      +++|+|.++++++. +++|+||.+++|+++++|||.|  +.+++         +...+++..+.+.++.++|+++|++++
T Consensus         8 ~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~--~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT--EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC--CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             eEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcC--cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            48999999999998 5999999999999999999997  33433         234578899999999999999999999


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCHHHHHHHHHHHHHH
Q 029372          115 DATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAGM  168 (194)
Q Consensus       115 ~~l~~~R~~l~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~  168 (194)
                      ++++++|++|.+++++.+++.+++|||+|+++.|+||++|+++.+||.+++.|.
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A~  139 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998865553