Citrus Sinensis ID: 029384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLED
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEEcccEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEEEEEEEEEcccEEEEccHHHHHHHHHHHHHHHHcccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHcccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEEccccccccccEEEEHccHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEHHHHHHEEccHHcccccccHHEEcccHHHHHHHHHccEEEEcccccccc
Coil and Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkttsTALVDRFLQTnssavsvqvGDNVTLaythqnesplrqrsfAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKAlrdrapyppnhvvghlSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLED
Flexible Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkTTSTALVDRFLQTNSSAVSVQVGDNVTLAYthqnesplrqrSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLkvvssqqqled
Low Complexity Region (SEG)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESllmdmlpllmmlTCskvlaashlllslkvvssqqqlED
Disordered region (IsUnstruct)
*********************************VDRFLQTNSSAVSVQVGDNVTLAYTHQN**PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVV********
Disordered Region (DISOPRED)
MLGVFSSAIVS*************************FLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKV*********
Disordered Region (DISEMBL)
MLGVFSSAIVSPPEE*************TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKV*********
Disordered Region (DISPRO)
ML**FSSAIVSPPEELVA*********TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
P24805	149	Stem-specific protein TSJ	N/A	no	0.737	0.959	0.431	1e-29

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 3/146 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTL 144
           YPP+ V+  L G FAFI++D   STL
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTL 145

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
56606534	236	aluminum-induced protein [Codonopsis lan	0.742	0.610	0.847	4e-67
388513727	236	unknown [Lotus japonicus]	0.742	0.610	0.833	1e-66
255552269	236	Stem-specific protein TSJT1, putative [R	0.742	0.610	0.854	1e-65
34541994	236	Al-induced protein [Gossypium hirsutum]	0.742	0.610	0.840	1e-65
224100337	236	predicted protein [Populus trichocarpa]	0.742	0.610	0.854	2e-65
225432548	236	PREDICTED: stem-specific protein TSJT1 [	0.742	0.610	0.847	3e-65
76573367	252	unknown [Solanum tuberosum]	0.742	0.571	0.840	5e-65
13958130	236	aluminium induced protein [Avicennia mar	0.742	0.610	0.826	5e-65
257219564	236	Al-induced protein [Jatropha curcas]	0.742	0.610	0.840	8e-65
238800460	236	aluminum-induced protein [Cucumis hystri	0.742	0.610	0.826	4e-64

>gi|56606534|gb|AAW02789.1| aluminum-induced protein [Codonopsis lanceolata]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 136/144 (94%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPPEELVAAGSRTPSPK T+TALV+RFL++N+SAVS+QVGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPEELVAAGSRTPSPKITATALVNRFLKSNASAVSMQVGDDVHLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP   RSFAVKDEIFCLFEGALDNLGSL+QQYGL+KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPSAPRSFAVKDEIFCLFEGALDNLGSLKQQYGLSKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           PNHVVGHL G FAF+V+DKSTSTL
Sbjct: 121 PNHVVGHLEGNFAFVVFDKSTSTL 144

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513727|gb|AFK44925.1| unknown [Lotus japonicus]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 137/144 (95%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ AL+ RF+++N+SAVSV++G+NV LAY+H+
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTAGALLKRFVESNASAVSVEIGENVQLAYSHR 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP + RSFAVKDEIFC+FEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPWQPRSFAVKDEIFCIFEGALDNLGSLRQQYGLAKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
            NHVVGHLSG FAFIV+DKSTSTL
Sbjct: 121 ANHVVGHLSGSFAFIVFDKSTSTL 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552269|ref|XP_002517179.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543814|gb|EEF45342.1| Stem-specific protein TSJT1, putative [Ricinus communis]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/144 (85%), Positives = 132/144 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK TS ALV RFL TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKITSDALVKRFLDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L+ RSFAVKD+IFCLFEGALDNLGSL+QQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  SESLLQPRSFAVKDDIFCLFEGALDNLGSLKQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           PNHVVGHLSG FAFIV+D STSTL
Sbjct: 121 PNHVVGHLSGSFAFIVFDNSTSTL 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34541994|gb|AAQ74889.1| Al-induced protein [Gossypium hirsutum]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 131/144 (90%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAG RTPSPK T+ ALV RFL+TNSS VS+ +GD+V  AY+H 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGCRTPSPKITADALVKRFLETNSSGVSMHIGDHVQFAYSHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ESPL+ RSFAVKDEIFCLFEGALDNLGSL+QQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  KESPLQPRSFAVKDEIFCLFEGALDNLGSLKQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           PNHVVGHL G FAFIV+DKSTSTL
Sbjct: 121 PNHVVGHLIGSFAFIVFDKSTSTL 144

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100337|ref|XP_002311836.1| predicted protein [Populus trichocarpa] gi|118485817|gb|ABK94756.1| unknown [Populus trichocarpa] gi|222851656|gb|EEE89203.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/144 (85%), Positives = 133/144 (92%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK ++ ALV RF+ TNSSAVSV+VGD+  +A+TH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKISADALVKRFVDTNSSAVSVRVGDDSQVAFTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES L  RSFAVKDEI+CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  NESMLLPRSFAVKDEIYCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           PNHVVGHLSG FAFIV+DKSTSTL
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTL 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432548|ref|XP_002280658.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|297736991|emb|CBI26192.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 132/144 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPP+ELVAAG RTPSPK T+ AL++RF+Q N SAVSV VGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPDELVAAGCRTPSPKITAEALMNRFIQGNPSAVSVHVGDHVQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESPL  RSFAVKDEIF LFEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPLLPRSFAVKDEIFSLFEGALDNLGSLRQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           PNHVVGHLSG FAFIV+DKSTSTL
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTL 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573367|gb|ABA46788.1| unknown [Solanum tuberosum]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 133/144 (92%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPPEELVAAGSRTPSPK TS ALV+RF+Q NSSA+S+Q+GD V LAY+H 
Sbjct: 1   MLGVFSSSIVSPPEELVAAGSRTPSPKITSDALVNRFVQRNSSAISMQIGDFVQLAYSHS 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES +  RSFAVKD+IFCLFEG+LDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESAVLPRSFAVKDDIFCLFEGSLDNLGSLRQQYGLAKSANEVMLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           PNHVVGHL G FAFIV+DKSTSTL
Sbjct: 121 PNHVVGHLEGNFAFIVFDKSTSTL 144

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13958130|gb|AAK50814.1|AF363286_1 aluminium induced protein [Avicennia marina]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 131/144 (90%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPK  +T LV RFL+ NSSAVSV++GD+  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKVAATKLVGRFLEANSSAVSVKIGDDAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           N+S LR RSFAVKDEIFCLFEGALDNLGSL+QQYGL KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NQSALRPRSFAVKDEIFCLFEGALDNLGSLKQQYGLGKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           P+HVVGHL G FAFIV+DKSTSTL
Sbjct: 121 PSHVVGHLQGNFAFIVFDKSTSTL 144

Source: Avicennia marina

Species: Avicennia marina

Genus: Avicennia

Family: Acanthaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219564|gb|ACV50435.1| Al-induced protein [Jatropha curcas]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 131/144 (90%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ ALV RF+ TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTADALVKRFIDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L  RSFAVKD++FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  SESLLHPRSFAVKDDVFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
            NHVVGHLSG FAFIV+D STSTL
Sbjct: 121 ANHVVGHLSGSFAFIVFDNSTSTL 144

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238800460|gb|ACR56069.1| aluminum-induced protein [Cucumis hystrix]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 134/144 (93%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLG+FSS+I+SPP+ELVAAGSRTPSPKTTS  L++RF+QTN SAVS+Q+GD+V LAYTH+
Sbjct: 1   MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ES L  RSFAVKD+IFCLFEG LDNLGSLRQQYGLAKSANEVIL+IEAYKALRDRAPYP
Sbjct: 61  TESALCPRSFAVKDDIFCLFEGVLDNLGSLRQQYGLAKSANEVILMIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTL 144
           P+HVVGHLSG FAFIV+DKSTSTL
Sbjct: 121 PSHVVGHLSGSFAFIVFDKSTSTL 144

Source: Cucumis hystrix

Species: Cucumis hystrix

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2182137	234	AILP1 "AT5G19140" [Arabidopsis	0.742	0.615	0.805	1.5e-58
TAIR|locus:2090116	253	AT3G15450 "AT3G15450" [Arabido	0.737	0.565	0.455	2.8e-27
TAIR|locus:2123994	250	AT4G27450 "AT4G27450" [Arabido	0.757	0.588	0.443	1.4e-25
TAIR|locus:2170822	251	AT5G43830 "AT5G43830" [Arabido	0.742	0.573	0.423	1.4e-25
TAIR|locus:2084598	248	AT3G22850 "AT3G22850" [Arabido	0.711	0.556	0.409	6.1e-23

TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 116/144 (80%), Positives = 129/144 (89%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             MLG+FS AIVSPPEELVAAGSRTPSPKTT + LV+RF++ N SAVSVQVGD V LAY+H 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             NESPLR RSF  KDEIFCLF+G+LDNLGSL+QQYGLAK+ANEV+LVIEAYK LRDRAPYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTSTL 144
              NHVV HLSG FAF+V+DKSTSTL
Sbjct:   121 ANHVVAHLSGDFAFVVFDKSTSTL 144

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 67/147 (45%), Positives = 90/147 (61%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTP--SPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S     +PK     L D      ++A S+  GD+  LAY 
Sbjct:     1 MLAIFQKAFAHPPEELNSPASHFSGKTPKLPGETLSDFLSHHQNNAFSMNFGDSAVLAYA 60

Query:    59 HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRA 117
              Q E+ LRQR F   D I+C+F G L+NL +L +QYGL+ K++NE + VIEAY+ LRDR 
Sbjct:    61 RQ-ETSLRQRLFCGLDGIYCMFLGRLNNLCTLNRQYGLSGKNSNEAMFVIEAYRTLRDRG 119

Query:   118 PYPPNHVVGHLSGYFAFIVYDKSTSTL 144
             PYP + V+  L G FAF+VYD  TS++
Sbjct:   120 PYPADQVLRGLEGSFAFVVYDTQTSSV 146

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 67/151 (44%), Positives = 86/151 (56%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S   S  PK     L D  L+   +  S+  G    LAY 
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    59 HQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117
               + S  + QR F   D+I+CLF G+L+NL  L +QYGL K+ NE + VIEAY+ LRDR 
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   118 PYPPNHVVGHLSGYFAFIVYD-KSTSTLTNL 147
             PYP + VV  L G F+F+VYD K+ S  T L
Sbjct:   121 PYPADQVVKDLDGSFSFVVYDSKAGSVFTAL 151

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 61/144 (42%), Positives = 84/144 (58%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             ML VF   + + PE L +  S   +      +L   F   N ++V++  G +  +AY+  
Sbjct:     1 MLAVFEKTVANSPEALQSPHSSESAFALKDGSLATHFASVNPNSVTLNFGSSGFVAYSLD 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             N  P   R FAV D+IFCLF+G ++NL  L+QQYGL K  NE I+VIEAY+ LRDR PYP
Sbjct:    61 NPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRGPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTSTL 144
              + VV    G FAFI++D    T+
Sbjct:   121 VDKVVRDFHGKFAFILFDSVKKTV 144

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 61/149 (40%), Positives = 87/149 (58%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSS-----AVSVQVGDNVTL 55
             ML +F   +   PE L   G    S      AL DRFL  + S     AV++ +G +  +
Sbjct:     1 MLAIFDKNVAKTPEAL--QGQEGGSV----CALKDRFLPNHFSSVYPGAVTINLGSSGFI 54

Query:    56 AYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRD 115
             A + + ++PL  R FAV D++FC+F+G ++N+  L+QQYGL K+A EV +VIEAY+ LRD
Sbjct:    55 ACSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRD 114

Query:   116 RAPYPPNHVVGHLSGYFAFIVYDKSTSTL 144
             R PY    VV    G F F++YD ST  +
Sbjct:   115 RGPYSAEQVVRDFQGKFGFMLYDCSTQNV 143


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       160   0.00097  106 3  11 22  0.37    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.23u 0.16s 15.39t   Elapsed:  00:00:01
  Total cpu time:  15.23u 0.16s 15.39t   Elapsed:  00:00:01
  Start:  Fri May 10 18:02:57 2013   End:  Fri May 10 18:02:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam12481	228	pfam12481, DUF3700, Aluminium induced protein	2e-80
cd01910	224	cd01910, Wali7, This domain is present in Wali7, a	1e-79
cd00352	220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	8e-04

>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein

 Score =  238 bits (609), Expect = 2e-80
 Identities = 79/145 (54%), Positives = 99/145 (68%), Gaps = 2/145 (1%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSP--KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH 59
           L VF  ++  PPEEL +  SR PS   K     L+  F+  N +AVSV  GD+  LAY+H
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
             +SPL  R FAV D+IFCLF+G L+NL SLRQQYGL+K+ANE +LVIEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 120 PPNHVVGHLSGYFAFIVYDKSTSTL 144
           P + VV  L G FAF++YD  T T+
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTV 145

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

 Score =  236 bits (604), Expect = 1e-79
 Identities = 90/143 (62%), Positives = 108/143 (75%), Gaps = 2/143 (1%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN 61
           L VFS A+  PPEELV+AGSRTP    T+  L+ RFL  N SAV V +G    LAY+H N
Sbjct: 1   LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHN 58

Query: 62  ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPP 121
           +SPL  R FAVKD+IFCLF+G LDNLGSL+QQYGL+K+ANE +LVIEAY+ LRDR PYP 
Sbjct: 59  QSPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPA 118

Query: 122 NHVVGHLSGYFAFIVYDKSTSTL 144
           + VV  L G FAF++YDK TST+
Sbjct: 119 DQVVKDLEGSFAFVLYDKKTSTV 141

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224

>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 74  DEIFCLFEGALDNLGSLRQQYGLAKSAN------EVILVIEAYKALRDRAPYPPNHVVGH 127
             I  +  G + N   LR++              EVIL +                 +  
Sbjct: 96  GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKR 155

Query: 128 LSGYFAFIVYDKSTSTL 144
           L G FAF ++D     L
Sbjct: 156 LDGPFAFALWDGKPDRL 172

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
cd01910	224	Wali7 This domain is present in Wali7, a protein o	100.0
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	100.0
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	100.0
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	100.0
PRK09431	554	asnB asparagine synthetase B; Provisional	100.0
PTZ00077	586	asparagine synthetase-like protein; Provisional	100.0
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	100.0
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	99.98
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	99.97
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	99.97
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	99.97
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.96
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	99.94
PRK08525	445	amidophosphoribosyltransferase; Provisional	99.92
PF13522	133	GATase_6: Glutamine amidotransferase domain	99.92
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.9
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.9
PRK07631	475	amidophosphoribosyltransferase; Provisional	99.9
PRK06388	474	amidophosphoribosyltransferase; Provisional	99.89
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	99.89
KOG0571	543	consensus Asparagine synthase (glutamine-hydrolyzi	99.89
PRK09123	479	amidophosphoribosyltransferase; Provisional	99.89
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	99.89
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	99.89
PRK07847	510	amidophosphoribosyltransferase; Provisional	99.88
PRK07272	484	amidophosphoribosyltransferase; Provisional	99.87
PRK07349	500	amidophosphoribosyltransferase; Provisional	99.87
PRK06781	471	amidophosphoribosyltransferase; Provisional	99.87
PRK08341	442	amidophosphoribosyltransferase; Provisional	99.87
PLN02440	479	amidophosphoribosyltransferase	99.86
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.86
PRK05793	469	amidophosphoribosyltransferase; Provisional	99.85
PRK09246	501	amidophosphoribosyltransferase; Provisional	99.85
TIGR01134	442	purF amidophosphoribosyltransferase. Alternate nam	99.83
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	99.78
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	99.72
COG0034	470	PurF Glutamine phosphoribosylpyrophosphate amidotr	99.33
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	99.25
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	99.23
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	99.09
cd01908	257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	99.05
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	98.91
KOG0572	474	consensus Glutamine phosphoribosylpyrophosphate am	98.87
TIGR03442	251	conserved hypothetical protein TIGR03442. Members	98.67
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	97.77
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	97.44
PF09147	201	DUF1933: Domain of unknown function (DUF1933); Int	96.4
PF13230	271	GATase_4: Glutamine amidotransferases class-II; PD	94.11
COG0067	371	GltB Glutamate synthase domain 1 [Amino acid trans	93.65

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=100.00  E-value=1.9e-63  Score=427.41  Aligned_cols=174  Identities=53%  Similarity=0.777  Sum_probs=166.8

Q ss_pred             cccccccccCCccccccCCCCCCCCCCChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccCCcEEEEEc
Q 029384            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE   81 (194)
Q Consensus         2 LavF~k~va~~PeeL~sp~~~~~~~~~~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFN   81 (194)
                      ||||+|+||++||||+||++.+  .++++++|+++|+++||++|||+||+++.|||++++|++++||+|+++++++|+||
T Consensus         1 laif~~~~~~~p~el~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn   78 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRT--PAKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ   78 (224)
T ss_pred             CcccccccCCCChHHcCCCccc--cCCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence            8999999999999999998753  36788899999999999999999999999999999999999999999999999999


Q ss_pred             eeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee
Q 029384           82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM  161 (194)
Q Consensus        82 GeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~  161 (194)
                      |||||+.+||++||+.+++||+|+||++|++||||||||+++++++|+|||||||||++++++|+||||+|+|||||...
T Consensus        79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~  158 (224)
T cd01910          79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA  158 (224)
T ss_pred             eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             -CCeEEEEechhHhHhh
Q 029384          162 -LPLLMMLTCSKVLAAS  177 (194)
Q Consensus       162 -~~~l~FaSEiKal~a~  177 (194)
                       ++.++||||+|+|...
T Consensus       159 ~dG~l~FASElkaL~~~  175 (224)
T cd01910         159 ADGSVVFSDDVELVKAS  175 (224)
T ss_pred             CCCEEEEEeCHHHhhhh
Confidence             8899999999999854

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=100.00  E-value=4e-61  Score=412.40  Aligned_cols=174  Identities=42%  Similarity=0.640  Sum_probs=166.4

Q ss_pred             cccccccccCCccccccCCCCCCC--CCCChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccCCcEEEE
Q 029384            2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL   79 (194)
Q Consensus         2 LavF~k~va~~PeeL~sp~~~~~~--~~~~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~v   79 (194)
                      ||||+|+||++||||+||++..++  ++|+++||+++|+++||+||||+||+++.|||++++|++++||+|++.|||+|+
T Consensus         1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi   80 (228)
T PF12481_consen    1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI   80 (228)
T ss_pred             CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence            899999999999999999976443  699999999999999999999999999999999999999999999999999999


Q ss_pred             EceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEE
Q 029384           80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLM  159 (194)
Q Consensus        80 FNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~  159 (194)
                      |.|.|.|+..|||||||+|++||+++||||||++|||||||+||||++|+|.|||||||++++++|+|||+-|.=|||+.
T Consensus        81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG  160 (228)
T PF12481_consen   81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG  160 (228)
T ss_pred             EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             e-eCCeEEEEechhHhH
Q 029384          160 D-MLPLLMMLTCSKVLA  175 (194)
Q Consensus       160 ~-~~~~l~FaSEiKal~  175 (194)
                      . .++.++|++++.-|-
T Consensus       161 i~~DGslv~Sdd~~~ik  177 (228)
T PF12481_consen  161 IAADGSLVFSDDLELIK  177 (228)
T ss_pred             EeCCCCEEEcCCHHHHH
Confidence            7 468899998887664

There are two conserved sequence motifs: YGL and LRDR.

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=100.00  E-value=5.9e-35  Score=246.32  Aligned_cols=100  Identities=21%  Similarity=0.115  Sum_probs=92.0

Q ss_pred             ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEE
Q 029384           71 AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTN  146 (194)
Q Consensus        71 ~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~  146 (194)
                      +..++++++|||||||+.|||+++   |. .++.||+|||+++|++||       .+++++|+|||||+|||++ ++|++
T Consensus        47 ~~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~l  118 (199)
T cd01909          47 ARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTL  118 (199)
T ss_pred             eeCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEE
Confidence            445689999999999999999998   44 389999999999999876       5899999999999999999 99999


Q ss_pred             EeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384          147 LVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       147 ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~  179 (194)
                      ||||+|+|||||+.. +.++||||+|+|++++.
T Consensus       119 aRDr~GikPLYy~~~-~~l~FASEikaLla~~~  150 (199)
T cd01909         119 ATDHAGSVPVYLVQA-GEVWATTELKLLAAHEG  150 (199)
T ss_pred             EECCCCCcCeEEEEC-CeEEEEeCHHHHhhCcC
Confidence            999999999999988 99999999999998754

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-34  Score=273.26  Aligned_cols=121  Identities=20%  Similarity=0.276  Sum_probs=110.1

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChh
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN  122 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~  122 (194)
                      +.||+ .+|+++...+  -+|||..+.++++++|||||||+.|||+++   |+ .+|.||||||+++|++|+       .
T Consensus        43 ~~~gh-~rL~i~d~~~--g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g-------~  112 (542)
T COG0367          43 ALLGH-RRLSIVDLSG--GRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWG-------E  112 (542)
T ss_pred             ceeee-eEEEEecccc--CCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHHHH-------H
Confidence            55677 8888887655  467777777889999999999999999998   45 599999999999999987       5


Q ss_pred             hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhh
Q 029384          123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAAS  177 (194)
Q Consensus       123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~  177 (194)
                      +|+++|+|||||+|||.++++||+||||||||||||+.+++.++||||+|+|+++
T Consensus       113 ~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~~~~l~faSE~Kal~~~  167 (542)
T COG0367         113 DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSKNENLAFASEIKALLAH  167 (542)
T ss_pred             HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEecCCceEEEechhhhhhC
Confidence            7999999999999999999999999999999999999999999999999999988

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=100.00  E-value=2.9e-33  Score=255.73  Aligned_cols=122  Identities=20%  Similarity=0.227  Sum_probs=111.4

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN  122 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~  122 (194)
                      +.+|+ ++|+++..+..  .||+.+.+++++++|||||||+.|||++|   |+. ++.||+|+|+++|++||       .
T Consensus        42 ~~lgh-~rl~i~d~~~~--~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~~g-------~  111 (467)
T TIGR01536        42 AILGH-RRLAIIDLSGG--AQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEWG-------E  111 (467)
T ss_pred             EEEEE-EEeEEeCCCCC--CCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHH-------H
Confidence            56777 88999876433  78888888999999999999999999997   553 89999999999999886       5


Q ss_pred             hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                      +++++|+|||||+|||++++++|+||||+|+|||||+..++.++||||+|+|++.+
T Consensus       112 ~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~~~~~~faSe~kaL~~~~  167 (467)
T TIGR01536       112 ECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYDGGQLYFASEIKALLAHP  167 (467)
T ss_pred             HHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEECCEEEEEecHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999875

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=100.00  E-value=9.7e-33  Score=260.67  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=106.9

Q ss_pred             EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC--C-CCcCchHHHHHHHHHHhhhcCCCChhhh
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--L-AKSANEVILVIEAYKALRDRAPYPPNHV  124 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G--~-~kt~sdtevileaY~~~~drGPyp~~~~  124 (194)
                      .+|+ ++|+++...  .-.||+++.+++++++|||||||+.|||+++.  + .+|.||+|||+++|++||       .++
T Consensus        45 ~lgh-~RLsIid~~--~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G-------~~~  114 (554)
T PRK09431         45 ILGH-ERLSIVDVN--GGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQEKG-------PDF  114 (554)
T ss_pred             EEEE-EEeeecCCC--CCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHHHHH-------HHH
Confidence            4566 788888753  34677888899999999999999999999984  3 389999999999999876       579


Q ss_pred             hcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhHhh
Q 029384          125 VGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLAAS  177 (194)
Q Consensus       125 l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~a~  177 (194)
                      +++|+|||||||||++++++++||||+|+|||||...+ +.++||||+|+|++.
T Consensus       115 ~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~  168 (554)
T PRK09431        115 LDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPV  168 (554)
T ss_pred             HHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHh
Confidence            99999999999999999999999999999999998876 899999999999764

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=261.93  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh-
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN-  122 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~-  122 (194)
                      .+|+ .+|+++....  -.||+.+.+++++++|||||||+.+||++|   |+. +|.||+|||+++|++||       . 
T Consensus        50 ~lgh-~RLsIvd~~~--g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G-------~~  119 (586)
T PTZ00077         50 ILAH-ERLAIVDLSD--GKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYG-------PK  119 (586)
T ss_pred             EEEe-ccceecCCCC--CCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhC-------HH
Confidence            4566 7788876532  467888888999999999999999999998   553 89999999999999865       4 


Q ss_pred             hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhHhh
Q 029384          123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLAAS  177 (194)
Q Consensus       123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~a~  177 (194)
                      +++++|+|||||||||++++++++||||+|+|||||.. .++.++||||+|+|++.
T Consensus       120 ~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~  175 (586)
T PTZ00077        120 DFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQ  175 (586)
T ss_pred             HHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHh
Confidence            79999999999999999999999999999999999986 56789999999999864

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=100.00  E-value=1.6e-32  Score=259.76  Aligned_cols=123  Identities=21%  Similarity=0.283  Sum_probs=110.1

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN  122 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~  122 (194)
                      +.+|+ ++|++++... .-.||+.+.+++++++|||||||+.|||+++   |+. +|.||+|||+++|++||       .
T Consensus        43 ~~lgh-~rl~i~~~~~-~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G-------~  113 (589)
T TIGR03104        43 VALGH-RRLKIIDLSE-ASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAWG-------R  113 (589)
T ss_pred             EEEEE-EeeEecCCCc-CCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH-------H
Confidence            56776 7788876533 3467788888899999999999999999997   653 89999999999999887       5


Q ss_pred             hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                      +|+++|+|||||+|||..++++++||||+|+|||||+..++.++||||+|+|++.+
T Consensus       114 ~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~~~~~~faSe~kaLl~~~  169 (589)
T TIGR03104       114 DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAG  169 (589)
T ss_pred             HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEeCCEEEEEeCHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999865

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=99.98  E-value=1.2e-32  Score=212.66  Aligned_cols=107  Identities=22%  Similarity=0.264  Sum_probs=74.6

Q ss_pred             ccccc-ccCCcEEEEEceeecCHHHHHHHhC---C-CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECC
Q 029384           66 RQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKS  140 (194)
Q Consensus        66 ~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~G---~-~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~  140 (194)
                      .||+. +..++++++|||+|||+.||++++.   . .++.+|+|+++++|+++.++|    .+++++|+|+|||||||++
T Consensus        13 ~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~   88 (125)
T PF13537_consen   13 AQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKD   88 (125)
T ss_dssp             ------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETT
T ss_pred             ccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCC
Confidence            45565 6788999999999999999999983   3 378999999999999855566    6899999999999999999


Q ss_pred             CCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhHh
Q 029384          141 TSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLAA  176 (194)
Q Consensus       141 ~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~a  176 (194)
                      ++++|+||||+|+|||||+..+ +.++||||+|+|+|
T Consensus        89 ~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a  125 (125)
T PF13537_consen   89 KKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA  125 (125)
T ss_dssp             E--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred             CcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence            9999999999999999999996 79999999999986

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=99.97  E-value=8.3e-32  Score=255.90  Aligned_cols=120  Identities=15%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC-C-CCcCchHHHHHHHHHHhhhcCCCChhhhh
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-L-AKSANEVILVIEAYKALRDRAPYPPNHVV  125 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~-~kt~sdtevileaY~~~~drGPyp~~~~l  125 (194)
                      .+|+ .+|++...  ..-.||+++.+++++++|||||||+.+||++++ + .+|.||+|||+++|++||       .+++
T Consensus        45 ~Lgh-~RLsI~d~--~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~G-------~~~~  114 (578)
T PLN02549         45 YLAH-ERLAIMDP--ESGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEHG-------EEFV  114 (578)
T ss_pred             EEEE-eeeeEeCC--CCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-------HHHH
Confidence            4565 77788765  234777888889999999999999999999985 3 489999999999999876       5899


Q ss_pred             cccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhh
Q 029384          126 GHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAAS  177 (194)
Q Consensus       126 ~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~  177 (194)
                      ++|+|||||||||++++++++||||+|+|||||... ++.++||||+|+|++.
T Consensus       115 ~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~  167 (578)
T PLN02549        115 DMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDD  167 (578)
T ss_pred             HhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHH
Confidence            999999999999999999999999999999999875 6789999999999875

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=99.97  E-value=2.7e-30  Score=244.40  Aligned_cols=122  Identities=19%  Similarity=0.272  Sum_probs=108.3

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN  122 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~  122 (194)
                      +.+|+ ++|++++..  .-.||+.+.+++++++|||||||+.|||+++   |+. +|.||+|+|+++|++||       .
T Consensus        44 ~~lgh-~rl~i~d~~--~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g-------~  113 (628)
T TIGR03108        44 IGLGH-RRLSIIDLS--GGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWG-------E  113 (628)
T ss_pred             EEEEE-EeeeecCCC--CCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHHHH-------H
Confidence            55777 888888652  3467788888999999999999999999997   553 89999999999999887       5


Q ss_pred             hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384          123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~  178 (194)
                      +|+++|+|||||+|||+.++++++||||+|+|||||+.. ++.++||||+|+|++..
T Consensus       114 ~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~  170 (628)
T TIGR03108       114 ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHP  170 (628)
T ss_pred             HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCC
Confidence            899999999999999999999999999999999999974 67899999999999764

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=99.97  E-value=1.4e-29  Score=210.82  Aligned_cols=121  Identities=18%  Similarity=0.182  Sum_probs=105.2

Q ss_pred             eCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhCC----CCcCchHHHHHHHHHHhhhcCCCChhhh
Q 029384           49 VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHV  124 (194)
Q Consensus        49 ~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~----~kt~sdtevileaY~~~~drGPyp~~~~  124 (194)
                      +|+ ++++.+...  .-.||+....+++++++||+|||+.+|+++++.    .++.||+|+|+++|++||       .++
T Consensus        44 lgh-~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g-------~~~  113 (220)
T cd00712          44 LGH-RRLSIIDLS--GGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWG-------EDC  113 (220)
T ss_pred             EEE-EeeeecCcc--cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHHHHHHHHHh-------HHH
Confidence            344 555554433  456777777789999999999999999999843    389999999999999875       589


Q ss_pred             hcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384          125 VGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       125 l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~  179 (194)
                      +++|+|+|||+|||++++++++||||+|++||||...++.++||||+|+|++...
T Consensus       114 ~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~~~~~~~aSe~~~l~~~~~  168 (220)
T cd00712         114 LERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRDGGGLAFASELKALLALPG  168 (220)
T ss_pred             HHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEECCEEEEEcchHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999998653

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=99.96  E-value=9.2e-29  Score=203.85  Aligned_cols=116  Identities=19%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhc
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVG  126 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~  126 (194)
                      +.||+ ++|++...  ..-.||+....++++++|||||||+.+||+      +.||||+|+++|+++++. .-...++++
T Consensus        48 ~~l~~-~rL~i~~~--~~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~~g~~-~~~i~~~~~  117 (181)
T cd03766          48 LLFTS-SVLSLRGD--HVTRQPLVDQSTGNVLQWNGELYNIDGVED------EENDTEVIFELLANCSSE-SQDILDVLS  117 (181)
T ss_pred             EEEEe-eEEEecCC--CCCCCCCEeCCCCEEEEECCEEECcccccC------CCCHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence            45555 77888763  234566666667899999999999999996      899999999999987620 001127999


Q ss_pred             ccccceEEEEEECCCCeEEEEeccCCceeEEEEee--CCeEEEEechh
Q 029384          127 HLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM--LPLLMMLTCSK  172 (194)
Q Consensus       127 ~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~--~~~l~FaSEiK  172 (194)
                      +|+|+|||||||+.++++++||||+|+|||||...  ++.|+|||+.-
T Consensus       118 ~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~  165 (181)
T cd03766         118 SIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSG  165 (181)
T ss_pred             hcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccC
Confidence            99999999999999999999999999999999997  78999999963

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=99.94  E-value=2.5e-26  Score=192.57  Aligned_cols=129  Identities=13%  Similarity=0.123  Sum_probs=106.0

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP  121 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~  121 (194)
                      .+-+|| .++|........-.||+....+++++++||+|||+.+||+++   |+ .+++||+|+|+++|..+++.|+-+.
T Consensus        65 ~~~igH-~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~  143 (215)
T cd00714          65 HVGIGH-TRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLL  143 (215)
T ss_pred             cEEEEE-EEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHH
Confidence            566777 677766533233466676666799999999999999999998   65 3899999999999998875443111


Q ss_pred             ---hhhhcccccceEEEEEECCCC-eEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          122 ---NHVVGHLSGYFAFIVYDKSTS-TLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       122 ---~~~l~~L~GmFAFvIyD~~~~-~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                         .+++++|+|+|||+|||+.++ ++++|||   +|||||...++.++||||+|+|.++.
T Consensus       144 ~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~~~~~~~aSE~~al~~~~  201 (215)
T cd00714         144 EAVKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIGDGENFVASDAPALLEHT  201 (215)
T ss_pred             HHHHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEcCCeEEEEECHHHHHHhc
Confidence               169999999999999999875 9999999   59999999999999999999999753

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=99.92  E-value=1.7e-24  Score=200.37  Aligned_cols=129  Identities=12%  Similarity=0.091  Sum_probs=102.4

Q ss_pred             EEEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY  119 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy  119 (194)
                      .+.+|| +++|..-....--.||+..  ..++++++|||+||||.+||++|   |+ .+|+||+|+|+++|.++++ +..
T Consensus        66 ~~~iGH-~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~  143 (445)
T PRK08525         66 EIAIGH-NRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESL  143 (445)
T ss_pred             cEEEee-cccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCH
Confidence            466787 7777664332233556665  46899999999999999999997   66 4899999999999987642 111


Q ss_pred             C--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384          120 P--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       120 p--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~  178 (194)
                      .  ..+++++|+|+|||+++|+  ++++++||++|+|||||... ++.++||||++||-..+
T Consensus       144 ~ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g  203 (445)
T PRK08525        144 KDRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIG  203 (445)
T ss_pred             HHHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccC
Confidence            0  1268999999999999995  78999999999999999975 56899999999995443

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=99.92  E-value=3.9e-24  Score=167.77  Aligned_cols=116  Identities=19%  Similarity=0.164  Sum_probs=99.1

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChh
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN  122 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~  122 (194)
                      +-+|| +++|-.-.......||.....+++++++||+|+|+.+||+++   |+ .++.||+|+|.+++++++       .
T Consensus        14 ~~lgH-~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~~g-------~   85 (133)
T PF13522_consen   14 AALGH-TRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHRWG-------E   85 (133)
T ss_pred             EEEEE-eecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHH-------H
Confidence            56677 677765544222236666677899999999999999999998   44 388999999999997665       5


Q ss_pred             hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEec
Q 029384          123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTC  170 (194)
Q Consensus       123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSE  170 (194)
                      +++++|+|+|||++||+..++++++|||+|++||||...++.++||||
T Consensus        86 ~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~~~~~~~ASE  133 (133)
T PF13522_consen   86 EALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRDGDGYVFASE  133 (133)
T ss_pred             HHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEcCCEEEEEeC
Confidence            799999999999999999999999999999999999999999999998

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=99.90  E-value=3.4e-23  Score=167.61  Aligned_cols=131  Identities=18%  Similarity=0.157  Sum_probs=105.4

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC---C-CCcCchHHHHHHHHHHhhhcCCC--C
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPY--P  120 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G---~-~kt~sdtevileaY~~~~drGPy--p  120 (194)
                      +-+|| .+.|-.........||.....+++++++||+|+|+.+||+++.   . .++.||+|+++++|..|++.+..  -
T Consensus        70 ~~i~H-~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~  148 (220)
T cd00352          70 VALGH-VRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEA  148 (220)
T ss_pred             EEEEE-eEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHH
Confidence            44455 4454433223344566655557999999999999999999873   2 48999999999999998743310  0


Q ss_pred             hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384          121 PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 ~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~  178 (194)
                      ..+++++++|.|||+|||..+++++++||++|.+||||... ++.++|+||.+++.+.+
T Consensus       149 ~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~  207 (220)
T cd00352         149 VEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALP  207 (220)
T ss_pred             HHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcC
Confidence            13689999999999999999999999999999999999999 99999999999999765

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=99.90  E-value=4e-23  Score=177.54  Aligned_cols=143  Identities=10%  Similarity=0.069  Sum_probs=106.9

Q ss_pred             ChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHH
Q 029384           29 TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVI  104 (194)
Q Consensus        29 ~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdte  104 (194)
                      ...++.+.+.. .+-.-.+.+|| +++|-.-.......||+..  +++++++||+|||+.+||+++   |. ..++||+|
T Consensus        62 ~~~~v~~~~~~-~~~~~~~~igH-~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsE  137 (249)
T cd01907          62 YPEDIARRYDL-EEYKGYHWIAH-TRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTE  137 (249)
T ss_pred             CHHHHHhhcCc-hheEEEEEEEE-EeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHH
Confidence            45556555432 22122566777 6666533222234555654  399999999999999999987   55 48999999


Q ss_pred             HHHHHHHHhhh-cCCCChh----------------------hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee
Q 029384          105 LVIEAYKALRD-RAPYPPN----------------------HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM  161 (194)
Q Consensus       105 vileaY~~~~d-rGPyp~~----------------------~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~  161 (194)
                      +|+++|+.+.. +| .+.+                      .++++|+|+|||+++|.  +.++++|||+|+|||||...
T Consensus       138 vi~~ll~~~~~~~g-~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~  214 (249)
T cd01907         138 VIAYYLDLLLRKGG-LPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET  214 (249)
T ss_pred             HHHHHHHHHHHhCC-ChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE
Confidence            99999875432 33 2222                      57899999999999996  45899999999999999999


Q ss_pred             CCeEEEEechhHhHhhc
Q 029384          162 LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       162 ~~~l~FaSEiKal~a~~  178 (194)
                      ++.++||||.++|.+.+
T Consensus       215 ~~~~~~ASE~~al~~~~  231 (249)
T cd01907         215 DDYVAIASEECAIREIP  231 (249)
T ss_pred             CCEEEEEEcHHHHhccC
Confidence            99999999999999764

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PRK07631 amidophosphoribosyltransferase; Provisional

Probab=99.90  E-value=3.6e-23  Score=193.63  Aligned_cols=128  Identities=13%  Similarity=0.100  Sum_probs=100.7

Q ss_pred             EEeCCceeEEEecCCCCCcccccc--ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP  120 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp  120 (194)
                      +-+|| .++|-.-.....-.||++  +..+++++++||+|||+.+||++|   |+ .+++||+|||+++|.+++. +.+.
T Consensus        77 ~gIGH-~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~-~~~~  154 (475)
T PRK07631         77 AAIGH-VRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGA-PTLK  154 (475)
T ss_pred             EEEEE-eeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHH
Confidence            55566 555544332223345553  456789999999999999999998   65 4899999999999998652 1110


Q ss_pred             --hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          121 --PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 --~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                        ..+++++|+|+|||++||.  ++++++|||+|+|||||...++.++||||.+||-..+
T Consensus       155 eai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~~~~~~~ASE~~Al~~~g  212 (475)
T PRK07631        155 EQIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRLGDAYVVASETCAFDVIG  212 (475)
T ss_pred             HHHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEeCCEEEEEeChHHHhhcC
Confidence              0258999999999999996  6799999999999999999999999999999996554

>PRK06388 amidophosphoribosyltransferase; Provisional

Probab=99.89  E-value=9e-23  Score=190.85  Aligned_cols=131  Identities=14%  Similarity=0.039  Sum_probs=103.5

Q ss_pred             EEEeCCceeEEEecCCCCCcccccc--ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhh-hcCC
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-DRAP  118 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~-drGP  118 (194)
                      .+.+|| .++|..........||+.  +..+++.+++||+|||+.+||++|   |+ .+|+||+|||+++|.... .+|.
T Consensus        83 ~~gIGH-~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~  161 (474)
T PRK06388         83 IVGVGH-TRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGL  161 (474)
T ss_pred             cEEEee-eeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCH
Confidence            467788 778776543323334443  346789999999999999999998   65 489999999999996432 2221


Q ss_pred             C-ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384          119 Y-PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       119 y-p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~  179 (194)
                      - ...+++++|+|+|||+|.++  ++|+++|||+|+|||||...++.++||||.+||...+.
T Consensus       162 ~eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~~~~~~~ASE~~Al~~~~~  221 (474)
T PRK06388        162 KEGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKNFDGYIIASESCAIDALSG  221 (474)
T ss_pred             HHHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEecCCEEEEEEChHHHHhccC
Confidence            0 01358999999999999976  78999999999999999999889999999999998654

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=99.89  E-value=5.9e-23  Score=193.53  Aligned_cols=130  Identities=13%  Similarity=0.108  Sum_probs=106.3

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP  121 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~  121 (194)
                      .+-+|| .++|..........||+....+++.+++||+|||+.+||+++   |+ .+++||+|+|+++|..+.+.|+-+.
T Consensus        66 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~  144 (604)
T PRK00331         66 TTGIGH-TRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLL  144 (604)
T ss_pred             cEEEEE-EecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHH
Confidence            455666 666665433334566776667899999999999999999998   55 3899999999999998765552111


Q ss_pred             ---hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384          122 ---NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       122 ---~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~  179 (194)
                         .+++++|+|+|||+|||+.+ +++++|||+   |||||...++.++||||+|+|...+-
T Consensus       145 ~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~~~~~~~aSE~~al~~~~~  203 (604)
T PRK00331        145 EAVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLGEGENFLASDALALLPYTR  203 (604)
T ss_pred             HHHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEcCCeEEEEECHHHHHHhcC
Confidence               36899999999999999998 999999995   99999999999999999999998763

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.89  E-value=1.3e-23  Score=195.75  Aligned_cols=120  Identities=15%  Similarity=0.175  Sum_probs=106.4

Q ss_pred             EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC-CC-CcCchHHHHHHHHHHhhhcCCCChhhhh
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEAYKALRDRAPYPPNHVV  125 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~~-kt~sdtevileaY~~~~drGPyp~~~~l  125 (194)
                      .||+ -+||+...  .+--||+.+++..++|..||||||+++||+..- +. +|.||+|+||++|++.|  |    .|+.
T Consensus        44 ~l~h-eRLAIvdp--~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~khg--~----~~~~  114 (543)
T KOG0571|consen   44 ILGH-ERLAIVDP--TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEKHG--G----EQAI  114 (543)
T ss_pred             cccc-cceeEecC--CcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhhcC--c----hhHH
Confidence            6777 67888775  445677999999999999999999999999974 54 88999999999999865  2    6899


Q ss_pred             cccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhHh
Q 029384          126 GHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLAA  176 (194)
Q Consensus       126 ~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~a  176 (194)
                      +.|+|||||+++|.+.+++.+|||+.|++||||.. .+++++||||+|+|-.
T Consensus       115 ~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d  166 (543)
T KOG0571|consen  115 CMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLED  166 (543)
T ss_pred             HHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhh
Confidence            99999999999999999999999999999999976 6778999999999864

>PRK09123 amidophosphoribosyltransferase; Provisional

Probab=99.89  E-value=4.6e-23  Score=192.83  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP  120 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp  120 (194)
                      +-+|| .++|........-.||+..  ..+++++++||+|||+.+||+++   |+ .+++||+|||+++|..++. +.+.
T Consensus        88 ~~IGH-~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~  165 (479)
T PRK09123         88 RAIGH-VRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFL  165 (479)
T ss_pred             EEEEE-EecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHH
Confidence            45666 6666554333334566654  36789999999999999999998   55 4899999999999987541 1111


Q ss_pred             --hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhh
Q 029384          121 --PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAAS  177 (194)
Q Consensus       121 --~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~  177 (194)
                        ..+++++|+|+|||+|||.  ++++++||++|+|||||...++.++||||.+||...
T Consensus       166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~~~~~~~ASE~~Al~~~  222 (479)
T PRK09123        166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGELDGSPILASETCALDII  222 (479)
T ss_pred             HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEECCEEEEEECchHHhcc
Confidence              0368999999999999997  689999999999999999998999999999999753

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=99.89  E-value=8.5e-23  Score=192.56  Aligned_cols=129  Identities=13%  Similarity=0.096  Sum_probs=105.0

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCCh
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP  121 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~  121 (194)
                      .+-+|| .++|........-.||+....+++.+++||+||||.+||+++   |+. +++||+|||+++|..+++.|+=+.
T Consensus        65 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~  143 (607)
T TIGR01135        65 GVGIGH-TRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLL  143 (607)
T ss_pred             cEEEEE-eeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHH
Confidence            456676 667665433333456666667889999999999999999998   553 899999999999999875442111


Q ss_pred             ---hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          122 ---NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       122 ---~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                         .+++++|+|||||+|||+.+ ++++++||.   |||||...++.++||||+|+|...+
T Consensus       144 ~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~~~~~~~aSE~~al~~~~  201 (607)
T TIGR01135       144 EAVQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLGDGENFVASDVTALLPVT  201 (607)
T ss_pred             HHHHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEECCCeEEEEEChHHHHhhC
Confidence               16899999999999999887 469999995   9999999999999999999999876

The member from Methanococcus jannaschii contains an intein.

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=99.89  E-value=1.9e-22  Score=172.19  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCC-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPY-  119 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPy-  119 (194)
                      +-+|| .++|..........||+..  ..+++++++||+|||+.+||+++   |.. ++.||+|+|+++|..+++.+.. 
T Consensus        66 ~~lgH-~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~  144 (252)
T cd00715          66 IAIGH-VRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLF  144 (252)
T ss_pred             EEEEE-EEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHH
Confidence            55666 5566554333334555554  35789999999999999999997   333 7899999999999987642110 


Q ss_pred             Ch-hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhHhh
Q 029384          120 PP-NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLAAS  177 (194)
Q Consensus       120 p~-~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~a~  177 (194)
                      -+ .+++++|+|+|||++||.  ++++++||++|++||||+..+ +.++||||.++|...
T Consensus       145 ~al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~  202 (252)
T cd00715         145 EAIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDII  202 (252)
T ss_pred             HHHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhccc
Confidence            00 259999999999999998  999999999999999999887 899999999999864

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=99.88  E-value=2.7e-22  Score=189.18  Aligned_cols=129  Identities=16%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             EEeCCceeEEEecCCCCCcccccccc---CCcEEEEEceeecCHHHHHHHh---CC------CCcCchHHHHHHHHHHhh
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALR  114 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~---~~~i~~vFNGeIyN~~eLr~q~---G~------~kt~sdtevileaY~~~~  114 (194)
                      +-+|| .+++..-.......||+...   .+++.+++||+|||+.+||+++   |.      .+++||+|+|++++..++
T Consensus        90 i~IGH-vR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~  168 (510)
T PRK07847         90 VAIGH-CRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGA  168 (510)
T ss_pred             EEEEe-ccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhc
Confidence            44666 55544332222335555542   6899999999999999999998   54      489999999999998876


Q ss_pred             hcCCCC--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          115 DRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       115 drGPyp--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                      +.|.+.  ..+++++|+|+|||+|||.  ++++++||++|+|||||...++.++||||.+||...+
T Consensus       169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~~~~~~vASE~~AL~~~g  232 (510)
T PRK07847        169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRLERGWVVASETAALDIVG  232 (510)
T ss_pred             cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEECCeEEEEechHHHhccC
Confidence            333211  0258999999999999996  6899999999999999999999999999999998764

>PRK07272 amidophosphoribosyltransferase; Provisional

Probab=99.87  E-value=6.9e-22  Score=185.39  Aligned_cols=129  Identities=13%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             EEEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY  119 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy  119 (194)
                      .+.+|| .++|..-....-..||+..  ..+++.+++||+|||+.+||+++   |+ .+|+||+|||++++..+.. +.+
T Consensus        77 ~~~IGH-~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~  154 (484)
T PRK07272         77 QAAIGH-VRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTF  154 (484)
T ss_pred             cEEEEE-eeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCH
Confidence            355677 6665543322233555654  46789999999999999999998   65 4899999999999987542 111


Q ss_pred             C--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384          120 P--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       120 p--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~  178 (194)
                      .  ..+++++|+|+|||+|.|.  ++++++|||+|+|||||... ++.++||||.+||...+
T Consensus       155 ~eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig  214 (484)
T PRK07272        155 MGKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVG  214 (484)
T ss_pred             HHHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccC
Confidence            0  1368999999999999996  68999999999999999875 55699999999997655

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=99.87  E-value=8.7e-22  Score=185.42  Aligned_cols=129  Identities=13%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             EEeCCceeEEEecCCCCCcccccccc--CCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcC-CC
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRA-PY  119 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drG-Py  119 (194)
                      +-+|| .++|..-.......||+...  .+++++++||+|||+.+||++|   |+ .+++||+|||+++|....+.| .+
T Consensus       100 i~IGH-vRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~  178 (500)
T PRK07349        100 LAVGH-TRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDW  178 (500)
T ss_pred             EEEEE-eecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCH
Confidence            55666 66665443322345666543  4789999999999999999998   65 389999999999998644333 11


Q ss_pred             C--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee----CCeEEEEechhHhHhhc
Q 029384          120 P--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM----LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       120 p--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~----~~~l~FaSEiKal~a~~  178 (194)
                      .  ..+++++|+|+|||+|.|.  ++++++||++|+|||||...    ++.++||||.+||-..+
T Consensus       179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg  241 (500)
T PRK07349        179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIG  241 (500)
T ss_pred             HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcC
Confidence            1  1368899999999999875  67999999999999999875    45799999999996544

>PRK06781 amidophosphoribosyltransferase; Provisional

Probab=99.87  E-value=1.5e-21  Score=182.45  Aligned_cols=128  Identities=13%  Similarity=0.124  Sum_probs=99.9

Q ss_pred             EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY-  119 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy-  119 (194)
                      +-+|| .+.|-.-.......||+..  ..+++++++||+|||+.+||++|   |. .+++||+|||+++|..+.. +.. 
T Consensus        77 ~~IGH-vRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~~~  154 (471)
T PRK06781         77 SAIGH-VRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DSLI  154 (471)
T ss_pred             EEEEE-eEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHH
Confidence            44555 5554443322233455532  36789999999999999999998   54 4899999999999987642 110 


Q ss_pred             -ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          120 -PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       120 -p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                       -..+++++|+|+|||+++|.  ++++++||++|+|||||...++.++||||.+||...|
T Consensus       155 eai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~~~~~~~ASE~~Al~~~g  212 (471)
T PRK06781        155 ESVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKMGDAYVVASETCAFDVVG  212 (471)
T ss_pred             HHHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEECCEEEEEECchHhhhcC
Confidence             01357899999999999996  7899999999999999999999999999999998654

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=99.87  E-value=2e-21  Score=180.41  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=95.9

Q ss_pred             EEEeCCceeEEEecCCCCCcccccccc--CCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHH-hhhcCC
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAP  118 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~-~~drGP  118 (194)
                      .+.+|| .++|.....  .-.||+...  .+++.+++||+|||+.+||++|   |+ .+|+||||||++++.. +.++|.
T Consensus        67 ~~~IGH-~R~sT~G~~--~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~  143 (442)
T PRK08341         67 NLAIGH-VRYSTSGSL--SEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGD  143 (442)
T ss_pred             CEEEEE-eeccccCCC--cCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCC
Confidence            466777 666665432  224444332  4789999999999999999998   65 4899999999776432 223342


Q ss_pred             C--ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          119 Y--PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       119 y--p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                      .  -..+++++|+|+|||+|.+.  ++++++||++|+|||||... +.++||||.+||...+
T Consensus       144 ~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~~~~~ASE~~Al~~~~  202 (442)
T PRK08341        144 EFEAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-DGHYFASEDSALRMFV  202 (442)
T ss_pred             HHHHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-CEEEEEeCcHHHHhhC
Confidence            1  01247899999999999986  78999999999999999984 5589999999998654

>PLN02440 amidophosphoribosyltransferase

Probab=99.86  E-value=4.1e-21  Score=179.42  Aligned_cols=129  Identities=12%  Similarity=0.104  Sum_probs=98.3

Q ss_pred             EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY-  119 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy-  119 (194)
                      +-+|| .+.+-+-.....-.||+..  ..+++++++||+|+|+.+||++|   |. .+++||+|+|+++|..+....+. 
T Consensus        67 ~~IGH-vRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~  145 (479)
T PLN02440         67 IAIGH-VRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFS  145 (479)
T ss_pred             EEEEE-EeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHH
Confidence            45666 5554443322334555553  34789999999999999999998   44 38999999999999865311100 


Q ss_pred             ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384          120 PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH  178 (194)
Q Consensus       120 p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~  178 (194)
                      -..+++++|+|+|||+|||+  ++++++||++|+|||||... ++.++||||.+||...+
T Consensus       146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g  203 (479)
T PLN02440        146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIG  203 (479)
T ss_pred             HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccC
Confidence            01479999999999999996  46999999999999999865 56799999999998764

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.86  E-value=3.2e-21  Score=184.02  Aligned_cols=129  Identities=12%  Similarity=0.120  Sum_probs=103.2

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCC-
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP-  120 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp-  120 (194)
                      .+.+|| .++|..-.....-.||+....+++.+++||+|||+.+||+++   |+. +++||+|||+++|....++|.-+ 
T Consensus        96 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~  174 (640)
T PTZ00295         96 TIGIAH-TRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQ  174 (640)
T ss_pred             cEEEEE-eccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHH
Confidence            356777 777665432223355665556899999999999999999997   663 89999999999987554454211 


Q ss_pred             --hhhhhcccccceEEEEEECC-CCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          121 --PNHVVGHLSGYFAFIVYDKS-TSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 --~~~~l~~L~GmFAFvIyD~~-~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                        ..+++++|+|+|||++||+. .++++++||+   |||||...++.++||||.++|...+
T Consensus       175 ~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~~~~~~~aSE~~al~~~~  232 (640)
T PTZ00295        175 EAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIGDDSIYVASEPSAFAKYT  232 (640)
T ss_pred             HHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEcCceEEEEechHHHHhhC
Confidence              12689999999999999987 5899999997   9999999988999999999998764

>PRK05793 amidophosphoribosyltransferase; Provisional

Probab=99.85  E-value=4.6e-21  Score=178.72  Aligned_cols=129  Identities=14%  Similarity=0.103  Sum_probs=101.1

Q ss_pred             EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP  120 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp  120 (194)
                      +-+|| .++|..-.......||...  ..+++.+++||+|+|+.+||+++   |+ .+++||+|+|++++.++...++--
T Consensus        82 ~~iGH-vR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~  160 (469)
T PRK05793         82 SAIGH-VRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEK  160 (469)
T ss_pred             EEEEE-eecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHH
Confidence            55666 5555443222233555554  36889999999999999999997   55 489999999999998765321100


Q ss_pred             -hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          121 -PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 -~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                       ..+++++|+|+|||+++|.  ++++++||++|+|||||...++.++||||.++|...+
T Consensus       161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~~~~~~vASE~~al~~~g  217 (469)
T PRK05793        161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKLGDDYILSSESCALDTIG  217 (469)
T ss_pred             HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEECCEEEEEEChHHHhhcC
Confidence             0268999999999999986  7899999999999999999999999999999998654

>PRK09246 amidophosphoribosyltransferase; Provisional

Probab=99.85  E-value=9.1e-21  Score=177.82  Aligned_cols=130  Identities=16%  Similarity=0.120  Sum_probs=97.1

Q ss_pred             EeCCceeEEEecCCCCCcccccc-ccCCcEEEEEceeecCHHHHHHHh----CC-CCcCchHHHHHHHHHHhhhc--C--
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRDR--A--  117 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~----G~-~kt~sdtevileaY~~~~dr--G--  117 (194)
                      -+|| .+.|.+-.......||+. ...+++.+++||+|+|+.+||+++    |. .+++||+|||+++|.++...  |  
T Consensus        68 ~IGH-vRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~  146 (501)
T PRK09246         68 GIGH-VRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLP  146 (501)
T ss_pred             EEEE-EcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccc
Confidence            4555 444444332223455554 344569999999999999999987    22 48999999999999876432  1  


Q ss_pred             --CCC-h---hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee----CCeEEEEechhHhHhhcc
Q 029384          118 --PYP-P---NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM----LPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       118 --Pyp-~---~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~----~~~l~FaSEiKal~a~~~  179 (194)
                        +.. .   .+++++|+|+|||++|.. .++++++||++|+|||||...    ++.++||||.+||...+.
T Consensus       147 ~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~  217 (501)
T PRK09246        147 LTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGF  217 (501)
T ss_pred             cCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCc
Confidence              100 0   158999999999999843 456999999999999999986    357999999999998654

>TIGR01134 purF amidophosphoribosyltransferase

Probab=99.83  E-value=4.6e-20  Score=170.69  Aligned_cols=129  Identities=16%  Similarity=0.084  Sum_probs=99.1

Q ss_pred             EEeCCceeEEEecCCCCCccccccc-cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP-  120 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp-  120 (194)
                      +-+|| .+++-+-.....-.||+.. ..+++++++||+|+|+.+||+++   |. .++.||+|+|+++|..++..+.-. 
T Consensus        67 ~~IgH-vR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~  145 (442)
T TIGR01134        67 VGIGH-VRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLF  145 (442)
T ss_pred             EEEEE-EEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHH
Confidence            55666 5555443322233555553 33459999999999999999997   44 388999999999999865211000 


Q ss_pred             --hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          121 --PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 --~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                        ..+++++|+|+|||++||.  ++++++||++|+|||||...++.++||||.++|...+
T Consensus       146 ~ai~~~~~~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~~~~~~~ASE~~al~~~g  203 (442)
T TIGR01134       146 EAIARVLKRVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKRGDGYVVASESCALDILG  203 (442)
T ss_pred             HHHHHHHHHhCccceEEEEEC--CEEEEEECCCCCCCcEEEEeCCEEEEEeCchHhcccC
Confidence              0268999999999999974  6899999999999999999999999999999998543

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.78  E-value=1.4e-18  Score=167.80  Aligned_cols=128  Identities=11%  Similarity=0.022  Sum_probs=98.6

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHH-hhhcCCCC
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAPYP  120 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~-~~drGPyp  120 (194)
                      .+.+|| .++|.......--.||+....+++++|+||+||||.+||++|   |+ .+|+||||||+++.+. +.++|...
T Consensus        98 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~  176 (670)
T PTZ00394         98 HVGIAH-TRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHN  176 (670)
T ss_pred             CEEEEE-eeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCC
Confidence            366777 777776543223345566667899999999999999999998   66 3999999999976432 22334211


Q ss_pred             h----hhhhcccccceEEEEEEC-CCCeEEEEeccCCceeEEEEeeC---------------------CeEEEEechhHh
Q 029384          121 P----NHVVGHLSGYFAFIVYDK-STSTLTNLVRFLFIGESLLMDML---------------------PLLMMLTCSKVL  174 (194)
Q Consensus       121 ~----~~~l~~L~GmFAFvIyD~-~~~~lf~ARDr~GiKPlyY~~~~---------------------~~l~FaSEiKal  174 (194)
                      .    .+++++|+|||||+|.+. ..+++++|||+   +||++...+                     +.+++|||++||
T Consensus       177 ~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~  253 (670)
T PTZ00394        177 FADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSF  253 (670)
T ss_pred             HHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHH
Confidence            1    269999999999999964 45999999998   999999865                     479999999999


Q ss_pred             Hhh
Q 029384          175 AAS  177 (194)
Q Consensus       175 ~a~  177 (194)
                      +..
T Consensus       254 ~~~  256 (670)
T PTZ00394        254 AEY  256 (670)
T ss_pred             HHh
Confidence            854

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=99.72  E-value=4e-17  Score=157.80  Aligned_cols=127  Identities=13%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             EEeCCceeEEEecCCCCCccccccc-cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHH----HHHhhhc-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEA----YKALRDR-  116 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevilea----Y~~~~dr-  116 (194)
                      +.+|| .++|-.-.......||+.. ..+++++|+||+||||.+||++|   |+ .+++||+|||+++    |++|+.. 
T Consensus        88 ~~IGH-~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~  166 (680)
T PLN02981         88 AGIAH-TRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEE  166 (680)
T ss_pred             EEEEE-cccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhccccc
Confidence            55666 5665543222222344443 34789999999999999999997   66 3899999999998    5544321 


Q ss_pred             CCCCh----hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeC------------------------CeEEE
Q 029384          117 APYPP----NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDML------------------------PLLMM  167 (194)
Q Consensus       117 GPyp~----~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~------------------------~~l~F  167 (194)
                      |++..    .+++++|+|+|||+|.++.. ++++++||.   +||++...+                        +.+++
T Consensus       167 ~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (680)
T PLN02981        167 GDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFL  243 (680)
T ss_pred             CCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEE
Confidence            10011    14899999999999999874 999999994   666665542                        36899


Q ss_pred             EechhHhHhh
Q 029384          168 LTCSKVLAAS  177 (194)
Q Consensus       168 aSEiKal~a~  177 (194)
                      |||..||...
T Consensus       244 aSe~~al~~~  253 (680)
T PLN02981        244 ASDASAVVEH  253 (680)
T ss_pred             EeCHHHHHHh
Confidence            9999999874

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=99.33  E-value=9e-12  Score=117.07  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=97.5

Q ss_pred             EEEeCCceeEEEecCC--CCCccccccccC--CcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhc-
Q 029384           46 SVQVGDNVTLAYTHQN--ESPLRQRSFAVK--DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDR-  116 (194)
Q Consensus        46 sv~~g~~~~lays~~~--~~~~~~~~f~~~--~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~dr-  116 (194)
                      ++-+||   .=|+-..  ...-.||++...  +.+.++.||.|-|..+||++|   |. ..|++|+|||++++..-.++ 
T Consensus        72 ~~~IGH---vRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~  148 (470)
T COG0034          72 NVGIGH---VRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDED  148 (470)
T ss_pred             cceeeE---eeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccc
Confidence            456666   4454322  223345565544  369999999999999999998   65 48999999999999864321 


Q ss_pred             CCC-ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCe-EEEEechhHhHhhcc
Q 029384          117 APY-PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPL-LMMLTCSKVLAASHL  179 (194)
Q Consensus       117 GPy-p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~-l~FaSEiKal~a~~~  179 (194)
                      +.. ...+++++++|-||+++-.+.  +|+++||+.|+|||.+...++. .++|||--||-..|.
T Consensus       149 ~~~~a~~~~~~~v~G~ys~v~~~~~--~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa  211 (470)
T COG0034         149 DIFEAVKEVLRRVKGAYALVALIKD--GLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGA  211 (470)
T ss_pred             cHHHHHHHHHhhcCCcEEEEEEECC--eEEEEECCCCCccceeeecCCCCEEEEechhhhhcccc
Confidence            110 013577899999999999875  9999999999999999997544 999999999977654

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=99.25  E-value=1e-10  Score=108.82  Aligned_cols=138  Identities=12%  Similarity=0.068  Sum_probs=96.9

Q ss_pred             CChHHHHHHhhcCCCC--cEEEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh-----------
Q 029384           28 TTSTALVDRFLQTNSS--AVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY-----------   94 (194)
Q Consensus        28 ~~~~~l~~~f~~~~~~--a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~-----------   94 (194)
                      ..++++.+-|....-.  .-.+.+|| .+.+-.-.+.-..-||.-      +++.||||+|+..+|+.+           
T Consensus       182 ~~~~~v~~~Y~DL~~~~~~s~~al~H-~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~  254 (413)
T cd00713         182 LLPEQLGQFYPDLQDPRFESAFALVH-SRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPL  254 (413)
T ss_pred             ccHHHHHHhccccCcccceEEEEEEE-EecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCcc
Confidence            5677788888865332  33344455 443221111112334432      489999999999999764           


Q ss_pred             -C-----C----CCcCchHHHHHHHHHHhhhcCCCChh-----------------------------hhhcccccceEEE
Q 029384           95 -G-----L----AKSANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAFI  135 (194)
Q Consensus        95 -G-----~----~kt~sdtevileaY~~~~drGPyp~~-----------------------------~~l~~L~GmFAFv  135 (194)
                       |     +    ..+.||++++.++.+.+-..|. +..                             .+.+.++|.||++
T Consensus       255 ~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~-~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv  333 (413)
T cd00713         255 FGEDLKKLKPIINPGGSDSASLDNVLELLVRSGR-SLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIA  333 (413)
T ss_pred             chhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCC-CHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEE
Confidence             1     1    2479999999999876654453 222                             2347799999999


Q ss_pred             EEECCCCeEEEEeccCCceeEEEEeeCC-eEEEEechhHhH
Q 029384          136 VYDKSTSTLTNLVRFLFIGESLLMDMLP-LLMMLTCSKVLA  175 (194)
Q Consensus       136 IyD~~~~~lf~ARDr~GiKPlyY~~~~~-~l~FaSEiKal~  175 (194)
                      +-|.  +.+.++|||.|.||++|..+++ .+++|||..+|-
T Consensus       334 ~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~  372 (413)
T cd00713         334 FTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVD  372 (413)
T ss_pred             EEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccC
Confidence            9986  6899999999999999997665 689999998884

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=99.23  E-value=5.4e-11  Score=114.88  Aligned_cols=141  Identities=14%  Similarity=0.183  Sum_probs=105.1

Q ss_pred             ChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCC-CccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchH
Q 029384           29 TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEV  103 (194)
Q Consensus        29 ~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~-~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdt  103 (194)
                      +-.++ +.-....|-.-.+-+|| +++| +|+..+ -.-+|.++  +++.+|-||-|.||.+||++|   |+ .+|++||
T Consensus        51 kv~~l-~~~~~~~~~~~~~gIgH-TRWA-THG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDT  125 (597)
T COG0449          51 KISNL-EELLNKEPLIGGVGIAH-TRWA-THGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDT  125 (597)
T ss_pred             CHHHH-HhhhcccccCCceeeee-cccc-CCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCch
Confidence            33444 34444444344566677 6675 443322 22333444  899999999999999999998   77 4999999


Q ss_pred             HHHHHHHHHhhhcCCCCh-hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhh
Q 029384          104 ILVIEAYKALRDRAPYPP-NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAAS  177 (194)
Q Consensus       104 evileaY~~~~drGPyp~-~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~  177 (194)
                      |||-|+.+..-+.|..-+ ..++++|+|.||+++-|+.. .++++||-   -.||+....++..++||-+-|++..
T Consensus       126 EVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~---~sPL~iG~g~~e~f~aSD~~a~l~~  198 (597)
T COG0449         126 EVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARK---GSPLVIGVGEGENFLASDVSALLNF  198 (597)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcC---CCCeEEEecCCcceEecChhhhhhh
Confidence            999999976654442111 35899999999999999987 89999986   3699999888888999999999854

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=99.09  E-value=4.2e-10  Score=106.15  Aligned_cols=88  Identities=18%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             ccCCcEEEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEecc
Q 029384           71 AVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRF  150 (194)
Q Consensus        71 ~~~~~i~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr  150 (194)
                      .++++++..|||||||-..       +.+..|+..|.+.-..+++.|  ...+.++.++|.|||++||.++++||..||+
T Consensus        66 v~d~~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~  136 (520)
T KOG0573|consen   66 VEDDRYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDD  136 (520)
T ss_pred             ecccceEEEecceeccCCC-------ccccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEeccc
Confidence            4556799999999999543       466778888888888776443  3446788899999999999999999999999


Q ss_pred             CCceeEEEEeeCCeEEE
Q 029384          151 LFIGESLLMDMLPLLMM  167 (194)
Q Consensus       151 ~GiKPlyY~~~~~~l~F  167 (194)
                      +|++.|.|..++..+.+
T Consensus       137 ~GRrSLly~~~~~~f~~  153 (520)
T KOG0573|consen  137 IGRRSLLYSLDPFNFSL  153 (520)
T ss_pred             ccceeeeEEeccCceeE
Confidence            99999999988877666

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

Probab=99.05  E-value=1.1e-09  Score=94.09  Aligned_cols=107  Identities=11%  Similarity=0.020  Sum_probs=81.9

Q ss_pred             CccccccccCCcEEEEEceeecCHHHHHHHh---C-C-CCcCchHHHHHHHHHHhhh-cCCCC-------hhhhhcccc-
Q 029384           64 PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G-L-AKSANEVILVIEAYKALRD-RAPYP-------PNHVVGHLS-  129 (194)
Q Consensus        64 ~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G-~-~kt~sdtevileaY~~~~d-rGPyp-------~~~~l~~L~-  129 (194)
                      ...||...  ++++++.||.|+|+.+||..+   | . .+++||+|++.++.....+ .++-+       ..+.++.|+ 
T Consensus        98 ~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~  175 (257)
T cd01908          98 ENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAA  175 (257)
T ss_pred             ccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence            33455544  389999999999999999887   3 2 4889999999988865432 22210       124778888 


Q ss_pred             ----cceEEEEEECCCCeEEEEeccCCceeEEEEee------------------CCeEEEEechhHhH
Q 029384          130 ----GYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM------------------LPLLMMLTCSKVLA  175 (194)
Q Consensus       130 ----GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~------------------~~~l~FaSEiKal~  175 (194)
                          |.++|++-|.  .++++.||+. ++||||...                  ++.+++|||.=+..
T Consensus       176 ~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~  240 (257)
T cd01908         176 LAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDD  240 (257)
T ss_pred             hCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCC
Confidence                7899999886  7799999998 899999986                  47899999976554

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=98.91  E-value=2.1e-08  Score=91.72  Aligned_cols=133  Identities=12%  Similarity=0.077  Sum_probs=85.9

Q ss_pred             CCChHHHHHHhhcCCCCcE--EEEeCCceeEEEecCCCC--CccccccccCCcEEEEEceeecCHHHHHHHh---CC-CC
Q 029384           27 KTTSTALVDRFLQTNSSAV--SVQVGDNVTLAYTHQNES--PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AK   98 (194)
Q Consensus        27 ~~~~~~l~~~f~~~~~~a~--sv~~g~~~~lays~~~~~--~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~k   98 (194)
                      -..+++|.+-|....-..+  .+.+||   .=|+-.-.+  ..-||..      +++-||||.|+..+|+.+   +. .+
T Consensus       175 ~~~~~~l~~~y~Dl~~~~~~s~~~i~H---~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~  245 (361)
T PF00310_consen  175 MGTPEQLAEFYPDLQDEDFKSHFAIGH---QRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLN  245 (361)
T ss_dssp             CC-GGGHHHHCCGGGCTTEEBSEEEEE---EEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBS
T ss_pred             ccCHHHHHHHHHhhccccccceEEEEE---EecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhccccc
Confidence            3567778777755322222  233344   224322222  4445554      899999999999999885   33 24


Q ss_pred             c----------------CchHHHHHHHHHHhhhcCCCCh-----------------------------hhhhcccccceE
Q 029384           99 S----------------ANEVILVIEAYKALRDRAPYPP-----------------------------NHVVGHLSGYFA  133 (194)
Q Consensus        99 t----------------~sdtevileaY~~~~drGPyp~-----------------------------~~~l~~L~GmFA  133 (194)
                      +                .||++++.++.+.+-.+| ++.                             ..+.+.++|-||
T Consensus       246 ~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaa  324 (361)
T PF00310_consen  246 SPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAA  324 (361)
T ss_dssp             STTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEE
T ss_pred             CccccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceE
Confidence            4                999999999988887777 211                             134677999999


Q ss_pred             EEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEech
Q 029384          134 FIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCS  171 (194)
Q Consensus       134 FvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEi  171 (194)
                      +++-|..  .+++.|||.|++|+.|..+ ++.+++|||-
T Consensus       325 i~~~~g~--~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~  361 (361)
T PF00310_consen  325 IIFTDGN--GVGAFLDRNGLRPLRYGITEDGLVVLASEA  361 (361)
T ss_dssp             EEEECSS--EEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred             EEEEeCC--EEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence            9998775  5999999999999999998 7888899993

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=98.87  E-value=1.1e-08  Score=95.36  Aligned_cols=131  Identities=15%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             EEEEeCCceeEEEecCC--CCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHH----
Q 029384           45 VSVQVGDNVTLAYTHQN--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA----  112 (194)
Q Consensus        45 ~sv~~g~~~~lays~~~--~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~----  112 (194)
                      =+|-+||   +-|+-.-  ...-.||...  ..+.+.+.-||++-|+++||+++   |.. .|+||+|+|++.+..    
T Consensus        68 g~~gIGH---~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~  144 (474)
T KOG0572|consen   68 GSIGIGH---TRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPED  144 (474)
T ss_pred             cceeeee---eecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHh
Confidence            3455666   5564322  2233454433  35779999999999999999997   443 899999999987653    


Q ss_pred             -hhhcC-CCCh--hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-----CeEEEEechhHhHhhccc
Q 029384          113 -LRDRA-PYPP--NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-----PLLMMLTCSKVLAASHLL  180 (194)
Q Consensus       113 -~~drG-Pyp~--~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-----~~l~FaSEiKal~a~~~~  180 (194)
                       ++..+ +|++  .++.+.++|.|+.++--.  ++|++.||++|++||......     +.+++|||.-+|++.+.-
T Consensus       145 ~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~  219 (474)
T KOG0572|consen  145 VYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGAR  219 (474)
T ss_pred             hhcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccE
Confidence             12222 2222  257788999999888754  459999999999999987632     369999999999887643

>TIGR03442 conserved hypothetical protein TIGR03442

Probab=98.67  E-value=1.3e-07  Score=82.14  Aligned_cols=100  Identities=11%  Similarity=0.037  Sum_probs=77.7

Q ss_pred             ccccccccCCcEEEEEceeecCHH-----HHHHHh---CC--CCcCchHHHHHHHHHHhh-hcCCCChh----hhhcccc
Q 029384           65 LRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---GL--AKSANEVILVIEAYKALR-DRAPYPPN----HVVGHLS  129 (194)
Q Consensus        65 ~~~~~f~~~~~i~~vFNGeIyN~~-----eLr~q~---G~--~kt~sdtevileaY~~~~-drGPyp~~----~~l~~L~  129 (194)
                      ..||...  ++++++.||.|-|+.     +||+++   |+  .+++||+|++.++..... +.+|...+    ++++.|.
T Consensus       102 N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~  179 (251)
T TIGR03442       102 ACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILF  179 (251)
T ss_pred             cCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence            3455543  699999999999998     566665   32  478999999888887654 32333322    4667778


Q ss_pred             cc-------eEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEech
Q 029384          130 GY-------FAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCS  171 (194)
Q Consensus       130 Gm-------FAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEi  171 (194)
                      |.       |.|++=|.  .+|++.||+-   ||||...++.+++|||-
T Consensus       180 ~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~~~~~vvASEp  223 (251)
T TIGR03442       180 SAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKDPEGVIVASEP  223 (251)
T ss_pred             HHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEcCCEEEEEeCC
Confidence            87       99999995  8899999986   99999988999999998

Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=97.77  E-value=2.2e-05  Score=76.13  Aligned_cols=90  Identities=16%  Similarity=0.272  Sum_probs=69.2

Q ss_pred             cccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCC------hhhhhcccccceEEE
Q 029384           66 RQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP------PNHVVGHLSGYFAFI  135 (194)
Q Consensus        66 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp------~~~~l~~L~GmFAFv  135 (194)
                      ||-.....+...+|-||-|-||++||+-+   |+. .+++|||+|-++|+..-|.-|-.      .++++++|+|-||++
T Consensus       100 HP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalv  179 (670)
T KOG1268|consen  100 HPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLL  179 (670)
T ss_pred             CCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHH
Confidence            44344667889999999999999999887   774 78999999999998765554310      468999999999998


Q ss_pred             EEECC-CCeEEEEecc----CCcee
Q 029384          136 VYDKS-TSTLTNLVRF----LFIGE  155 (194)
Q Consensus       136 IyD~~-~~~lf~ARDr----~GiKP  155 (194)
                      .=-+. -+++.+.|+-    .|+|+
T Consensus       180 fkS~hfP~e~Va~RrgSPlliGvKs  204 (670)
T KOG1268|consen  180 FKSSHFPGEVVAARKGSPLLIGVKS  204 (670)
T ss_pred             HHhhcCCcceeeeccCCcceeeecc
Confidence            75433 4888888882    56554

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=97.44  E-value=0.0012  Score=70.20  Aligned_cols=139  Identities=9%  Similarity=0.005  Sum_probs=84.9

Q ss_pred             CChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccC-CcEEEEEceeecCHHHHHHHh-----C--C---
Q 029384           28 TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVK-DEIFCLFEGALDNLGSLRQQY-----G--L---   96 (194)
Q Consensus        28 ~~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~-~~i~~vFNGeIyN~~eLr~q~-----G--~---   96 (194)
                      ..+++|.+-|..-.-..+.      +.+|..|+.-+-...|.+.-- ---+++-||||.-+.--|...     -  .   
T Consensus       193 l~~~ql~~fY~DL~d~~~~------s~~al~HsRFSTNT~PsW~~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~~~  266 (1485)
T PRK11750        193 MMPADLPRFYLDLADLRLE------SAICVFHQRFSTNTLPRWPLAQPFRYLAHNGEINTITGNRQWARARAYKFQTPLI  266 (1485)
T ss_pred             ccHHHHHHhhhhhCCccee------EEEEEEECcCCCCCCCCCCcCCCceeeeeccccccHHHHHHHHHHHHHhccCCCc
Confidence            5678888888854332222      223333332221122222111 122469999998776554331     1  1   


Q ss_pred             ----------CCcCchHHHHHHHHHHhhhcCCCChh-----------------------------hhhcccccceEEEEE
Q 029384           97 ----------AKSANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAFIVY  137 (194)
Q Consensus        97 ----------~kt~sdtevileaY~~~~drGPyp~~-----------------------------~~l~~L~GmFAFvIy  137 (194)
                                ....||++++=.+.+-+-..| .+..                             -+.+-++|-||+++-
T Consensus       267 ~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G-~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~  345 (1485)
T PRK11750        267 PDLQEAAPFVNETGSDSSSLDNMLELLLAGG-MDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMT  345 (1485)
T ss_pred             chHHhhCCcCCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEE
Confidence                      256778887766555443333 1111                             244456999999999


Q ss_pred             ECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhH
Q 029384          138 DKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLA  175 (194)
Q Consensus       138 D~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~  175 (194)
                      |.  +.+.+.|||.|.||+-|.. +++.+++|||.-+|-
T Consensus       346 ~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ld  382 (1485)
T PRK11750        346 DG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWD  382 (1485)
T ss_pred             eC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeee
Confidence            95  8999999999999996555 566699999988765

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices

Probab=96.40  E-value=0.032  Score=48.09  Aligned_cols=92  Identities=20%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             ccCCcEEEEEceeecCHHHHHHHhCC----CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEE
Q 029384           71 AVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTN  146 (194)
Q Consensus        71 ~~~~~i~~vFNGeIyN~~eLr~q~G~----~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~  146 (194)
                      .+.+..+++  |.|||-.-||.-.|.    .-.-||+|+++-.|-.+|       ...+.--+|.|.|.|=| ++++|.+
T Consensus        46 ~~~~tayLI--GsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~-kng~L~l  115 (201)
T PF09147_consen   46 FERGTAYLI--GSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIED-KNGELTL  115 (201)
T ss_dssp             ETTEEEEEE--S--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEE-TTSEEEE
T ss_pred             ecCccEEEE--EEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEec-CCCcEEE
Confidence            334444554  999999999988765    367899999999999887       57999999999999975 5799999


Q ss_pred             EeccCCceeEEEEeeCCeEEEEechhH
Q 029384          147 LVRFLFIGESLLMDMLPLLMMLTCSKV  173 (194)
Q Consensus       147 ARDr~GiKPlyY~~~~~~l~FaSEiKa  173 (194)
                      -.|.=|.-|.|.-+.+.. +.---+|-
T Consensus       116 ~Tds~G~~pv~lV~~~~~-WiTn~LK~  141 (201)
T PF09147_consen  116 ITDSRGFNPVYLVQSKFI-WITNSLKL  141 (201)
T ss_dssp             EE-SSSSS-EEEEESSSE-EEES-HHH
T ss_pred             EecCCCCceEEEEecCce-EEecceEE
Confidence            999999999987776644 33333443

Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D

Probab=94.11  E-value=0.11  Score=45.90  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             CCcEEEEEceeecCHHHHHH-HhCCCCcCchHHHHHHHHH-HhhhcCC---CChh-------hhhcccc--cceEEEEEE
Q 029384           73 KDEIFCLFEGALDNLGSLRQ-QYGLAKSANEVILVIEAYK-ALRDRAP---YPPN-------HVVGHLS--GYFAFIVYD  138 (194)
Q Consensus        73 ~~~i~~vFNGeIyN~~eLr~-q~G~~kt~sdtevileaY~-~~~drGP---yp~~-------~~l~~L~--GmFAFvIyD  138 (194)
                      .++++.+-||.|+++..++. .|- ..+++|+|.+....- .+.+.++   ...+       +.+++++  |.+.|++.|
T Consensus       100 g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsD  178 (271)
T PF13230_consen  100 GRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSD  178 (271)
T ss_dssp             ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-
T ss_pred             CCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEEC
Confidence            36899999999999988773 244 466777777766654 3333332   1111       2234444  789999999


Q ss_pred             CCCCeEEEEec
Q 029384          139 KSTSTLTNLVR  149 (194)
Q Consensus       139 ~~~~~lf~ARD  149 (194)
                      -  .+||+-|+
T Consensus       179 G--~~l~a~~~  187 (271)
T PF13230_consen  179 G--ERLFAHRY  187 (271)
T ss_dssp             S--S-EEEEEE
T ss_pred             C--ceEEEEEc
Confidence            7  68999998

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]

Probab=93.65  E-value=0.67  Score=43.47  Aligned_cols=34  Identities=15%  Similarity=0.295  Sum_probs=25.3

Q ss_pred             EEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHH
Q 029384           77 FCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAY  110 (194)
Q Consensus        77 ~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY  110 (194)
                      +++-||||.++.-.|+.+   |. .++.+|+|++-+++
T Consensus       227 ~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~  264 (371)
T COG0067         227 LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLL  264 (371)
T ss_pred             eeeecceecccccHHHHHHHhhcccccCccHHHHHHHH
Confidence            349999999999988765   44 37777777766655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	99.96
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	99.96
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	99.94
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.93
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.93
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	99.89
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.89
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	99.8
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	99.02
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	98.83
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	98.74

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=99.96  E-value=1.5e-29  Score=234.23  Aligned_cols=104  Identities=14%  Similarity=0.051  Sum_probs=93.7

Q ss_pred             cccccccC----CcEEEEEceeecCHHHHHHHhCC-CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECC
Q 029384           66 RQRSFAVK----DEIFCLFEGALDNLGSLRQQYGL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKS  140 (194)
Q Consensus        66 ~~~~f~~~----~~i~~vFNGeIyN~~eLr~q~G~-~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~  140 (194)
                      .||+....    ++++++|||||||+.|||+++++ .+|+||||||+++|++||       .+|+++|+|||||||||++
T Consensus        57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~~g-------~~~~~~l~G~fA~~i~d~~  129 (513)
T 1jgt_A           57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERYD-------LHAFRLVNGRFATVVRTGD  129 (513)
T ss_dssp             CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHHG-------GGGGGTCCEEEEEEEEETT
T ss_pred             CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-------HHhHhhcCeeEEEEEEECC
Confidence            45555544    78999999999999999999975 389999999999999876       5899999999999999987


Q ss_pred             CCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          141 TSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       141 ~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                      +  ||+||||+|+|||||+..++.++||||+|+|++.+
T Consensus       130 ~--l~~aRD~~G~kPLyy~~~~~~~~faSe~~aL~~~~  165 (513)
T 1jgt_A          130 R--VLLATDHAGSVPLYTCVAPGEVRASTEAKALAAHR  165 (513)
T ss_dssp             E--EEEEECTTCCSCCEEEEETTEEEEESCHHHHHTC-
T ss_pred             E--EEEEECCCCCceeEEEEeCCEEEEcchHHHHHhcc
Confidence            6  99999999999999999999999999999999875

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=99.96  E-value=1.3e-29  Score=236.30  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=102.7

Q ss_pred             EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC--C-CCcCchHHHHHHHHHHhhhcCCCChhhh
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--L-AKSANEVILVIEAYKALRDRAPYPPNHV  124 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G--~-~kt~sdtevileaY~~~~drGPyp~~~~  124 (194)
                      .+|| .+||++...  .-.||+.+.+++++++|||||||+.+||+++.  + .+|+||||||+++|++||       .++
T Consensus        44 ~lgh-~Rlsi~~~~--~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~~~g-------~~~  113 (553)
T 1ct9_A           44 ILAH-ERLSIVDVN--AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKG-------PEF  113 (553)
T ss_dssp             EEEE-EECCCSCTT--TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHHHT-------TTT
T ss_pred             EEEE-EeeeeeCCC--CCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHHHHH-------HHH
Confidence            3444 555555432  45678888888999999999999999999984  2 389999999999999865       479


Q ss_pred             hcccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhHh
Q 029384          125 VGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLAA  176 (194)
Q Consensus       125 l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~a  176 (194)
                      +++|+|||||+|||+++++|++||||+|+|||||.. .++.++||||+|+|++
T Consensus       114 l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~  166 (553)
T 1ct9_A          114 LDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVP  166 (553)
T ss_dssp             GGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTT
T ss_pred             HHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHh
Confidence            999999999999999999999999999999999998 5788999999999975

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=99.94  E-value=1.4e-26  Score=194.17  Aligned_cols=126  Identities=11%  Similarity=0.097  Sum_probs=100.6

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP-  121 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~-  121 (194)
                      +.+|| .++|..........||+..  +++++++||+|||+.+||+++   |+ .++.||+|+|+++|+.|++.|+-+. 
T Consensus        67 ~~igH-~R~at~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~  143 (240)
T 1xff_A           67 TGIAH-TRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLRE  143 (240)
T ss_dssp             EEEEE-EECCSSSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHH
T ss_pred             EEEEE-EeccCCCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHH
Confidence            34444 4454432222234566655  799999999999999999997   66 4899999999999999875553111 


Q ss_pred             --hhhhcccccceEEEEEECC-CCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          122 --NHVVGHLSGYFAFIVYDKS-TSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       122 --~~~l~~L~GmFAFvIyD~~-~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                        .+++++|+|||||+|||.+ .++||++||+   |||||...++.++||||+|||.+.+
T Consensus       144 ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~~~~~~~aSE~~al~~~~  200 (240)
T 1xff_A          144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLGMGENFIASDQLALLPVT  200 (240)
T ss_dssp             HHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEECSSCEEEESSGGGTTTTC
T ss_pred             HHHHHHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEeCCEEEEEECHHHHHhhC
Confidence              1699999999999999986 6999999998   9999999999999999999998654

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=99.93  E-value=1.1e-26  Score=214.37  Aligned_cols=118  Identities=16%  Similarity=0.135  Sum_probs=103.0

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHH---HHHHHh-CCCCcCchHHHHHHHHHHhhhcCCCCh
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLG---SLRQQY-GLAKSANEVILVIEAYKALRDRAPYPP  121 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~---eLr~q~-G~~kt~sdtevileaY~~~~drGPyp~  121 (194)
                      .+.+|| .+++...   ..-.||+.+.+++++++  |||||+.   +||++| |..+|.||||||+++|++||       
T Consensus        27 ~~~igh-~R~~t~~---~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~~g-------   93 (503)
T 1q15_A           27 GEALSN-GYLFIEQ---NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG-------   93 (503)
T ss_dssp             EEEETT-EEEEEET---TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC-------
T ss_pred             ceeEee-eeEEEcC---CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHHHH-------
Confidence            578888 7887753   23467788877788888  9999999   999998 42389999999999999864       


Q ss_pred             hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCe-----------------EEEEechhHhHhh
Q 029384          122 NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPL-----------------LMMLTCSKVLAAS  177 (194)
Q Consensus       122 ~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~-----------------l~FaSEiKal~a~  177 (194)
                      .+++++|+|||||+|||+.++ |++||||+|+|||||...++.                 ++||||+|+|++.
T Consensus        94 ~~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~  165 (503)
T 1q15_A           94 ANALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSL  165 (503)
T ss_dssp             GGGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEESSSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCS
T ss_pred             HHHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEeCCceecccccccccccCCcceEEecchHHHHhc
Confidence            579999999999999999998 999999999999999998888                 9999999999864

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=99.93  E-value=1.3e-25  Score=204.64  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=99.7

Q ss_pred             EeCCceeEEEecCCCCCccccccc---cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFA---VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP  120 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~---~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp  120 (194)
                      -+|| .++|..........||+..   ..+++++++||+|||+.+||+++   |+ .+++||+|+|+++|..|++..+..
T Consensus        67 ~igH-~R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~  145 (459)
T 1ao0_A           67 AIGH-VRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKD  145 (459)
T ss_dssp             EEEE-EECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHH
T ss_pred             EEEE-EecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHH
Confidence            3444 4444333222234566765   56789999999999999999997   65 489999999999999764211100


Q ss_pred             -hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          121 -PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 -~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                       ..+++++|+|+|||+|||  .++||++|||+|+|||||...++.++||||+|+|.+.+
T Consensus       146 a~~~~~~~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~~~~~~~ASE~~al~~~~  202 (459)
T 1ao0_A          146 QIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVG  202 (459)
T ss_dssp             HHHHHHTTCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEETTEEEEESSTHHHHHHT
T ss_pred             HHHHHHHhhccceEEEEEe--CCEEEEEECCCCCCCeEEEecCCEEEEEECchHHhcCC
Confidence             037999999999999999  48999999999999999999999999999999998754

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=99.89  E-value=2.7e-23  Score=194.65  Aligned_cols=126  Identities=11%  Similarity=0.096  Sum_probs=102.0

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP-  121 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~-  121 (194)
                      +.+|| .++|..........||+..  +++++++||+|||+.+||+++   |+ .+++||||+|+++|+.|.++|+-+. 
T Consensus        67 ~~igH-~R~at~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~  143 (608)
T 2bpl_A           67 TGIAH-TRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLRE  143 (608)
T ss_dssp             EEEEE-EECCCSSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred             EEEEE-EccCCCCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHH
Confidence            44555 5555433222234566665  799999999999999999997   76 4899999999999998755563111 


Q ss_pred             --hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          122 --NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       122 --~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                        .+++++|+|+|||+|||..+ +++|++||+   |||||...++.++||||+|+|.+..
T Consensus       144 av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~~~~~~~aSe~~al~~~~  200 (608)
T 2bpl_A          144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLGMGENFIASDQLALLPVT  200 (608)
T ss_dssp             HHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEECSSCEEEESSGGGTTTTC
T ss_pred             HHHHHHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEeCCeEEEEechHHHHhcC
Confidence              15899999999999999998 999999998   9999999999999999999998754

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=99.89  E-value=6.6e-23  Score=189.17  Aligned_cols=129  Identities=14%  Similarity=0.087  Sum_probs=97.9

Q ss_pred             EeCCceeEEEecCCCCCcccccccc-CCcEEEEEceeecCHHHHHHHh---C-C-CCcCchHHHHHHHHHHhhh-cCC--
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---G-L-AKSANEVILVIEAYKALRD-RAP--  118 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~-~~~i~~vFNGeIyN~~eLr~q~---G-~-~kt~sdtevileaY~~~~d-rGP--  118 (194)
                      -+|| .++|..-.......||++.. .+++++++||+|||+.+||+++   | . .+++||+|+|+++|.++.+ +|+  
T Consensus        68 ~igH-~R~sT~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~  146 (504)
T 1ecf_A           68 GIGH-VRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYP  146 (504)
T ss_dssp             EEEE-EECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSS
T ss_pred             EEEE-EccCcCCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccc
Confidence            3444 44443332222345666643 3569999999999999999987   2 3 5899999999999998643 242  


Q ss_pred             -CChh------hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee---C--CeEEEEechhHhHhhc
Q 029384          119 -YPPN------HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM---L--PLLMMLTCSKVLAASH  178 (194)
Q Consensus       119 -yp~~------~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~---~--~~l~FaSEiKal~a~~  178 (194)
                       .+.+      +++++|+|+|||++||.. ++||++|||+|+|||||...   +  +.++||||.+||...+
T Consensus       147 ~~~~~~~~a~~~~~~~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~  217 (504)
T 1ecf_A          147 LEADNIFAAIAATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG  217 (504)
T ss_dssp             CCHHHHHHHHHHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHT
T ss_pred             cccccHHHHHHHhhhhcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccC
Confidence             1111      579999999999999864 47999999999999999987   3  4799999999998765

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}

Probab=99.80  E-value=9.6e-20  Score=157.49  Aligned_cols=120  Identities=12%  Similarity=0.024  Sum_probs=85.2

Q ss_pred             EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---C--C----CCcCchHHHHHHHHHHhhhc
Q 029384           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G--L----AKSANEVILVIEAYKALRDR  116 (194)
Q Consensus        46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G--~----~kt~sdtevileaY~~~~dr  116 (194)
                      .+-+|| .++|..-.......||+..  +++.+++||+|||+.+||+++   |  .    .+++||+|+|+++|.+++..
T Consensus        82 ~~~igH-vR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~  158 (274)
T 3mdn_A           82 GLFLSH-VRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLE  158 (274)
T ss_dssp             EEEEEE-C------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTT
T ss_pred             CEEEEE-EccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhc
Confidence            455676 6666543222233566655  689999999999999999987   4  1    27899999999999765421


Q ss_pred             CCCCh---hhhhcccccc-----------eEEEEEECCCCeEEEEecc-CCceeEEEEe-eC--CeEEEEech
Q 029384          117 APYPP---NHVVGHLSGY-----------FAFIVYDKSTSTLTNLVRF-LFIGESLLMD-ML--PLLMMLTCS  171 (194)
Q Consensus       117 GPyp~---~~~l~~L~Gm-----------FAFvIyD~~~~~lf~ARDr-~GiKPlyY~~-~~--~~l~FaSEi  171 (194)
                      + -|.   .+++++|+|+           |+|+++|.  ++|+++||+ +|+|||+|+. .+  +.++||||.
T Consensus       159 ~-~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~  228 (274)
T 3mdn_A          159 H-DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP  228 (274)
T ss_dssp             T-CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC
T ss_pred             C-CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc
Confidence            1 111   1689999999           99999985  789999998 9999955554 44  789999998

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1

Probab=99.02  E-value=1.1e-10  Score=99.41  Aligned_cols=121  Identities=10%  Similarity=-0.033  Sum_probs=84.7

Q ss_pred             EEEeCCceeEEEecCC-CCCcccccccc--CCcEEEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhc-CC-CC
Q 029384           46 SVQVGDNVTLAYTHQN-ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDR-AP-YP  120 (194)
Q Consensus        46 sv~~g~~~~lays~~~-~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~dr-GP-yp  120 (194)
                      .+-+|| .+.| |++. .....||....  .+++.++.||.|.|+.+ |++++...++||+|+|.++.....+. ++ .|
T Consensus        72 ~~~IgH-vR~A-T~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~  148 (257)
T 1te5_A           72 ETVIGH-IRQA-NVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPV  148 (257)
T ss_dssp             EEEEEE-EEEC-CCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             cEEEEE-eecC-CCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCc
Confidence            355666 4444 3332 22445666654  36899999999999999 87755468999999999988754321 11 12


Q ss_pred             -h---hhhhcccc------cceEEEEEECCCCeEEEEec----------cCCceeEEE-------E----eeCCeEEEEe
Q 029384          121 -P---NHVVGHLS------GYFAFIVYDKSTSTLTNLVR----------FLFIGESLL-------M----DMLPLLMMLT  169 (194)
Q Consensus       121 -~---~~~l~~L~------GmFAFvIyD~~~~~lf~ARD----------r~GiKPlyY-------~----~~~~~l~FaS  169 (194)
                       .   .+.++++.      |.|+|++-|.  .+|++.||          ++|++||..       .    ..++..++||
T Consensus       149 ~~~a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvAS  226 (257)
T 1te5_A          149 PVEVLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIAT  226 (257)
T ss_dssp             CHHHHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEES
T ss_pred             hHHHHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEe
Confidence             1   14556665      9999999986  78999999          999999864       2    2334689999


Q ss_pred             ch
Q 029384          170 CS  171 (194)
Q Consensus       170 Ei  171 (194)
                      |-
T Consensus       227 E~  228 (257)
T 1te5_A          227 EP  228 (257)
T ss_dssp             SC
T ss_pred             Cc
Confidence            93

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=98.83  E-value=8e-09  Score=106.64  Aligned_cols=137  Identities=9%  Similarity=0.003  Sum_probs=92.2

Q ss_pred             CCChHHHHHHhhcCC-CC-cEEEEeCCceeEEEecCCCC--CccccccccCCcEEEEEceeecCHHHHHHHh--------
Q 029384           27 KTTSTALVDRFLQTN-SS-AVSVQVGDNVTLAYTHQNES--PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY--------   94 (194)
Q Consensus        27 ~~~~~~l~~~f~~~~-~~-a~sv~~g~~~~lays~~~~~--~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~--------   94 (194)
                      -..++++-+.|..-. +. .-.+.+|| .+  ||-..-+  ..-||+..      ++.||||.|+..+|+.+        
T Consensus       182 mgl~~~v~~~y~dL~d~~~~g~~aigH-~R--ySTnt~p~w~~AQPf~~------laHNGeInn~~~nr~~m~are~~~~  252 (1479)
T 1ea0_A          182 MFLAEQLTTFYPDLLDERFESDFAIYH-QR--YSTNTFPTWPLAQPFRM------LAHNGEINTVKGNVNWMKAHETRME  252 (1479)
T ss_dssp             SSCGGGHHHHCGGGGSTTCCBSEEEEE-EC--CCSCSCCCSTTSSCCSS------EEEEECCTTHHHHHHHHHHHGGGCC
T ss_pred             CcCHHHhhhhhhhhcccccceeEEEee-ec--ccCCCCCCcccCCccEE------EEECChhhCHHHHHHHHHHhHhhhc
Confidence            356777877776432 21 12234455 22  3322211  33455532      89999999999999652        


Q ss_pred             ----C--------C-CCcCchHHHHHHHHHHhhhcCCCChh-----------------------------hhhcccccce
Q 029384           95 ----G--------L-AKSANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYF  132 (194)
Q Consensus        95 ----G--------~-~kt~sdtevileaY~~~~drGPyp~~-----------------------------~~l~~L~GmF  132 (194)
                          |        . ..++||+|+|.++.+.+-..| .+..                             .+++.++|-|
T Consensus       253 ~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g-~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~  331 (1479)
T 1ea0_A          253 HPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAG-RTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPA  331 (1479)
T ss_dssp             CSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTT-CCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSE
T ss_pred             CchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcC-CCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcE
Confidence                2        2 479999999944444332223 1111                             2357899999


Q ss_pred             EEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhH
Q 029384          133 AFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLA  175 (194)
Q Consensus       133 AFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~  175 (194)
                      |+++=|.  +.+.++|||.|.||+.|... ++.+++|||.-+|-
T Consensus       332 slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~gald  373 (1479)
T 1ea0_A          332 ALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVK  373 (1479)
T ss_dssp             EEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSC
T ss_pred             EEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEccccccc
Confidence            9999765  89999999999999999976 45799999998874

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=98.74  E-value=7.7e-08  Score=99.64  Aligned_cols=135  Identities=12%  Similarity=0.065  Sum_probs=91.9

Q ss_pred             CCChHHHHHHhhcC----CCCcEEEEeCCceeEEEecCCCC--CccccccccCCcEEEEEceeecCHHHHH------HH-
Q 029384           27 KTTSTALVDRFLQT----NSSAVSVQVGDNVTLAYTHQNES--PLRQRSFAVKDEIFCLFEGALDNLGSLR------QQ-   93 (194)
Q Consensus        27 ~~~~~~l~~~f~~~----~~~a~sv~~g~~~~lays~~~~~--~~~~~~f~~~~~i~~vFNGeIyN~~eLr------~q-   93 (194)
                      -..++++-+.|...    ...+  +.+|| .+  ||-.--+  ..-||+..      ++.||||.|+..+|      ++ 
T Consensus       178 mgl~~~v~~~y~dL~~~~~~g~--~aigH-~R--ySTnt~p~w~~AQPf~~------LaHNGeInt~~~nrnwm~aR~~~  246 (1520)
T 1ofd_A          178 MVRSIILGEFYLDLKNPGYTSN--FAVYH-RR--FSTNTMPKWPLAQPMRL------LGHNGEINTLLGNINWMAAREKE  246 (1520)
T ss_dssp             SSCHHHHHHHBHHHHCTTCCBS--EEEEE-EC--CCSSSCCCGGGSSCCSS------EEEEECCTTHHHHHHHHHHHGGG
T ss_pred             CccHHHHhhhhhhcccccccee--EEEEE-cc--ccCCCCCCcccCCchhe------eEecchhhcHHHHHHHHHHHHHH
Confidence            35677777776633    3333  34455 22  3322211  34455532      89999999999998      32 


Q ss_pred             -----h--------C--CCCcCchHHHHHHHHHHhhhcCCCChh-------------------------------hhhcc
Q 029384           94 -----Y--------G--LAKSANEVILVIEAYKALRDRAPYPPN-------------------------------HVVGH  127 (194)
Q Consensus        94 -----~--------G--~~kt~sdtevileaY~~~~drGPyp~~-------------------------------~~l~~  127 (194)
                           +        +  ...+.||+|+|.++.+-+-..|. +..                               .+++.
T Consensus       247 ~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~-~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~  325 (1520)
T 1ofd_A          247 LEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGR-SPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEP  325 (1520)
T ss_dssp             CCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTC-CHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCC
T ss_pred             hcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCC-CHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhccc
Confidence                 1        3  25899999999755553322231 111                               23688


Q ss_pred             cccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhH
Q 029384          128 LSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLA  175 (194)
Q Consensus       128 L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~  175 (194)
                      ++|-||+++=|.  +++.++|||.|.||+.|...+ +.+++|||.-+|-
T Consensus       326 ~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~gald  372 (1520)
T 1ofd_A          326 WDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVD  372 (1520)
T ss_dssp             CCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSC
T ss_pred             CCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEccccccc
Confidence            999999999887  899999999999999998865 5799999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	100.0
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	100.0
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	99.97
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	99.9
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	99.8
d1ecfa2	249	Glutamine PRPP amidotransferase, N-terminal domain	99.77
d1te5a_	253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	97.96
d1ea0a3	422	Alpha subunit of glutamate synthase, N-terminal do	96.64
d1ofda3	430	Alpha subunit of glutamate synthase, N-terminal do	95.76

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-33  Score=230.58  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=100.8

Q ss_pred             EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhCC---CCcCchHHHHHHHHHHhhhcCCCChhhh
Q 029384           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKALRDRAPYPPNHV  124 (194)
Q Consensus        48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~---~kt~sdtevileaY~~~~drGPyp~~~~  124 (194)
                      .+|+ ++|+.+..+..  .++.+..+++++++|||||||+.+|++++..   .+++||+|+++++|++|+       .++
T Consensus        44 ~lgh-~Rlsi~~~~~~--~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~~~g-------~~~  113 (192)
T d1ct9a2          44 ILAH-ERLSIVDVNAG--AQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKG-------PEF  113 (192)
T ss_dssp             EEEE-EECCCSCTTTC--CSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHHHT-------TTT
T ss_pred             EEEE-EEEEEccccCC--cccccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhhhcc-------hhh
Confidence            3454 66666653322  3334466789999999999999999999843   378899999999999876       579


Q ss_pred             hcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhh
Q 029384          125 VGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAAS  177 (194)
Q Consensus       125 l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~  177 (194)
                      +++|+|||||+|||.++++|++||||+|+|||||..+ ++.++||||+|+|++.
T Consensus       114 ~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~  167 (192)
T d1ct9a2         114 LDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPV  167 (192)
T ss_dssp             GGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTT
T ss_pred             hhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHh
Confidence            9999999999999999999999999999999999876 4579999999999864

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=100.00  E-value=5.1e-33  Score=231.69  Aligned_cols=102  Identities=15%  Similarity=0.045  Sum_probs=92.6

Q ss_pred             cccccccCCcEEEEEceeecCHHHHHHHhCCC-CcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeE
Q 029384           66 RQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTL  144 (194)
Q Consensus        66 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~~-kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~l  144 (194)
                      .||+..  .+.++||||||||+.|||++||+. ++.||||||+++|++||       .+++++|+|||||+|||+  +++
T Consensus        60 ~qp~~~--~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l~~~~G-------~~~l~~l~G~Fa~vi~d~--~~l  128 (206)
T d1jgta2          60 ARSLTG--APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERYD-------LHAFRLVNGRFATVVRTG--DRV  128 (206)
T ss_dssp             EEECSS--SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHHG-------GGGGGTCCEEEEEEEEET--TEE
T ss_pred             CcccCC--CCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHHhhhhC-------HHHHHHHHhhhheeeeec--ceE
Confidence            455644  368999999999999999999985 89999999999999877       589999999999999996  589


Q ss_pred             EEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          145 TNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       145 f~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                      ++||||+|+|||||+.+++.++||||+|+|++..
T Consensus       129 ~laRD~~G~KPLyy~~~~~~~~fASe~kaLl~~~  162 (206)
T d1jgta2         129 LLATDHAGSVPLYTCVAPGEVRASTEAKALAAHR  162 (206)
T ss_dssp             EEEECTTCCSCCEEEEETTEEEEESCHHHHHTC-
T ss_pred             EEEEecccceeEEEEEcCCceEechhhHHHHhCC
Confidence            9999999999999999999999999999998754

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.97  E-value=5.3e-33  Score=232.18  Aligned_cols=100  Identities=17%  Similarity=0.091  Sum_probs=87.0

Q ss_pred             ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEE
Q 029384           71 AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTN  146 (194)
Q Consensus        71 ~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~  146 (194)
                      ...++++++|||||||+.+||+++   |. .++.||||||+++|+.||       .+++++|+|||||+|||+ ++++++
T Consensus        45 ~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~~~G-------~~~l~~l~G~Faf~i~~~-~~~l~l  116 (204)
T d1q15a2          45 CEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG-------ANALALAEGDFCFFIDEP-NGELTV  116 (204)
T ss_dssp             EECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC-------GGGGGGCCSSEEEEEECT-TSCEEE
T ss_pred             ccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHHHHH-------HHHHHhhCCceEEEEecC-CceEEE
Confidence            456899999999999999999997   33 389999999999999876       589999999999999775 578999


Q ss_pred             EeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384          147 LVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       147 ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~  179 (194)
                      ||||+|+|||||+.+++.++|+|| |++.+...
T Consensus       117 ~RD~~G~KPLyY~~~~~~~ifSS~-k~i~~~~~  148 (204)
T d1q15a2         117 ITESRGFSPVHVVQGKKAWMTNSL-KLVTAAEG  148 (204)
T ss_dssp             EECSSSSSCCEEEESSSEEEESCH-HHHHHHHC
T ss_pred             EECCCCccceEEEecCCEEEEEec-hhhhhhcc
Confidence            999999999999999999888765 66665443

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=5.4e-24  Score=174.95  Aligned_cols=106  Identities=12%  Similarity=0.088  Sum_probs=89.5

Q ss_pred             cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC-hhhhhcccccceEEEEEECCCCeEEE
Q 029384           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP-PNHVVGHLSGYFAFIVYDKSTSTLTN  146 (194)
Q Consensus        72 ~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp-~~~~l~~L~GmFAFvIyD~~~~~lf~  146 (194)
                      ..+++++++||+||||.|||++|   |. ..+++|+|+++++|+.++...... ..+++++|+|||||+++|+  +.+++
T Consensus        93 ~~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~--~~~~~  170 (234)
T d1gph12          93 NNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTE--TEMIV  170 (234)
T ss_dssp             TTCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEECS--SCEEE
T ss_pred             ccceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHHhhhhHHHHHHHHHHhcCCceEEEEeec--CceeE
Confidence            35789999999999999999997   66 489999999999998643111000 1368999999999999986  67999


Q ss_pred             EeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384          147 LVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL  179 (194)
Q Consensus       147 ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~  179 (194)
                      +|||+|+|||||..+++.++||||.+||...+.
T Consensus       171 ~rD~~G~~PL~~g~~~~~~~~aSE~~al~~~~~  203 (234)
T d1gph12         171 ALDPNGLRPLSIGMMGDAYVVASETCAFDVVGA  203 (234)
T ss_dssp             EECTTCCSCCEEEEETTEEEEESSTHHHHHHTC
T ss_pred             EEcCCCCcCEEEEecCCEEEEEECHHHHhhcCC
Confidence            999999999999999999999999999986543

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.6e-19  Score=148.92  Aligned_cols=126  Identities=12%  Similarity=0.102  Sum_probs=95.5

Q ss_pred             EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh-
Q 029384           47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP-  121 (194)
Q Consensus        47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~-  121 (194)
                      +-+|| .++|-.........||  ...+++++++||+||||.+||++|   |+ .++.+|||+|++++..+...+.-.. 
T Consensus        67 ~~igH-~R~aT~g~~~~~n~~p--~~~~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e  143 (238)
T d1xffa_          67 TGIAH-TRWATHGEPSEVNAHP--HVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLRE  143 (238)
T ss_dssp             EEEEE-EECCSSSCSSTTTSSC--EEETTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHH
T ss_pred             EEEee-ecccccccccccCCcc--ccCCcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHH
Confidence            44666 6666432221111133  235789999999999999999997   65 4899999999999987654432211 


Q ss_pred             --hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384          122 --NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH  178 (194)
Q Consensus       122 --~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~  178 (194)
                        .+++++|+|+|||++.|... ..++.+||   .|||||...++.++||||.++|.+.+
T Consensus       144 ~i~~~~~~l~G~~a~~i~~~~~~~~i~~~~~---~~PL~~g~~~~~~~~aSE~~al~~~~  200 (238)
T d1xffa_         144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARS---GSPLVIGLGMGENFIASDQLALLPVT  200 (238)
T ss_dssp             HHHHHGGGCCEEEEEEEEETTCTTCEEEEEE---BSCCEEEECSSCEEEESSGGGTTTTC
T ss_pred             HHHHHHHHccCchhhhhhhccCCCEEEEECC---CccCEEEECCceEEEEcCHHHHHHhh
Confidence              35899999999999999865 67777776   48999999999999999999998754

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.4e-18  Score=144.94  Aligned_cols=130  Identities=12%  Similarity=0.052  Sum_probs=96.2

Q ss_pred             EEeCCceeEEEecCCCC-CccccccccCCcEEEEEceeecCHHHHHHHh----CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384           47 VQVGDNVTLAYTHQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRDRAPYP  120 (194)
Q Consensus        47 v~~g~~~~lays~~~~~-~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~----G~-~kt~sdtevileaY~~~~drGPyp  120 (194)
                      +.+|| .++|-.-.... -.||.+...++++.+|+||+|+||.||++++    |. .++.+|+||+++++....+.+.-.
T Consensus        67 ~gIGH-tR~aT~G~~~~~nahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~  145 (249)
T d1ecfa2          67 MGIGH-VRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHY  145 (249)
T ss_dssp             EEEEE-EECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSS
T ss_pred             eeeeE-eecccCCCCchhcccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHHHHHHHhccccc
Confidence            45566 55554322222 2344455556789999999999999997653    55 489999999999988766554321


Q ss_pred             ----------hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-----CeEEEEechhHhHhhc
Q 029384          121 ----------PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-----PLLMMLTCSKVLAASH  178 (194)
Q Consensus       121 ----------~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-----~~l~FaSEiKal~a~~  178 (194)
                                ...++++++|.|++++.. ....++++|||.|+|||||...+     +.+++|||.+||...+
T Consensus       146 ~~~~~~~~~~i~~~~~~l~Gs~~~~~~~-~~~~~~~~rD~~GirPL~~G~~~~~~~~~~~~vaSE~~Al~~~~  217 (249)
T d1ecfa2         146 PLEADNIFAAIAATNRLIRGAYACVAMI-IGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG  217 (249)
T ss_dssp             SCCHHHHHHHHHHHHHHCCEEEEEEEEE-TTTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHT
T ss_pred             cchhhhHHHHHHHHHHhcCCCceEEEEe-cCCCceEEEecCCCccceeccccccCCCcEEEEEeCHHHHhhcC
Confidence                      134778899999988775 44679999999999999998753     5689999999997544

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.96  E-value=4.9e-06  Score=67.02  Aligned_cols=131  Identities=13%  Similarity=0.046  Sum_probs=79.0

Q ss_pred             CCCcEEEEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHH-HhhhcC
Q 029384           41 NSSAVSVQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYK-ALRDRA  117 (194)
Q Consensus        41 ~~~a~sv~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~-~~~drG  117 (194)
                      +|-.-.+-+|| .+.|=.-.......||...  ..+++.++.||.|.|+.+|++.+.. ++++|+|++.+... .+.+..
T Consensus        66 ~~~~s~~~igH-vR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~~~~-~g~tDse~~~~~i~~~l~~~~  143 (253)
T d1te5a_          66 FPIKSETVIGH-IRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRP-VGETDSEAAFCDLLNRVRRAF  143 (253)
T ss_dssp             SCCEEEEEEEE-EEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSSCC-SSCCHHHHHHHHHHHHHHHHC
T ss_pred             CcCCCcEEEEE-eeeccCCCCccccCCceEEEcCCCCEEEEEeeeEechhhhhhhhcc-cCCCccchhHHHHHHHHHhcc
Confidence            34333556777 5554332222233455432  3467899999999999999877643 56778777655544 222333


Q ss_pred             CC--Chhhh---hccc------ccceEEEEEECCC------CeEEEEeccCCceeEEEEeeCCeEEEEechhH
Q 029384          118 PY--PPNHV---VGHL------SGYFAFIVYDKST------STLTNLVRFLFIGESLLMDMLPLLMMLTCSKV  173 (194)
Q Consensus       118 Py--p~~~~---l~~L------~GmFAFvIyD~~~------~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKa  173 (194)
                      +.  +.+.+   +.++      .+.+.|+++|-..      ......||+.+.+|.++...+..++++||-.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~dg~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (253)
T d1te5a_         144 PEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTP  216 (253)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESSSCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSST
T ss_pred             ccCCchHHHHHHHHHHHHhhccceEEEEEccCCCEEEEEecCCceEEEEccCCCceeeccCCCceEEeccccC
Confidence            22  22222   2222      4688899988642      22223577888889988888877777777543

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

Probab=96.64  E-value=0.0025  Score=56.53  Aligned_cols=49  Identities=10%  Similarity=-0.094  Sum_probs=39.5

Q ss_pred             hhcccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHh
Q 029384          124 VVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVL  174 (194)
Q Consensus       124 ~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal  174 (194)
                      +..-.+|-.|++.-|-  +.+.+..||.|-+|+-|.. .++.+++|||.-.+
T Consensus       323 ~~epwdGPA~i~ftdg--~~~ga~lDRnGLRP~ry~~t~d~~~i~aSE~Gv~  372 (422)
T d1ea0a3         323 VMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMV  372 (422)
T ss_dssp             HCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTS
T ss_pred             hccccCCCeEEEEecC--CEEEEEecCCCCCcceEEEecCCEEEEEeccccc
Confidence            3455689999999985  7889999999999995554 56678889997654

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

Probab=95.76  E-value=0.0079  Score=53.39  Aligned_cols=47  Identities=6%  Similarity=-0.094  Sum_probs=38.7

Q ss_pred             cccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHh
Q 029384          126 GHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVL  174 (194)
Q Consensus       126 ~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal  174 (194)
                      +-.+|-+|++.-|-  +.+.+++||-|-+|+-|.. .++.+++|||.-.+
T Consensus       324 EpWDGPA~i~ftdG--~~iga~lDRnGLRP~Ry~~t~d~~~i~aSE~Gv~  371 (430)
T d1ofda3         324 EPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVV  371 (430)
T ss_dssp             CCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCS
T ss_pred             hcccCCEEEEEecC--CEEEEEecCCCCCcceEEEecCCEEEEEeccccc
Confidence            33469999999996  8999999999999995555 56778899997554