Citrus Sinensis ID: 029386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MWASQQNSSQLSNKQQKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEcccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEccccHHHHHHHccccccc
Coil and Loop (DISEMBL)
mwasqqnssqlsnKQQKQEKVSLAvsfrpenfipglVIGFIFGMLLdlskpgknyvkkknflprkpqeqvsvssdgdqDLKLALVVRQDlkmgsgkiasQCAHAATGMYAELMQSDRHLLRKWeqcgqpkivvTCKNQQEMNKLWEVAentglptfvvadagrtqvsagsktvlaigpgpkslvdsvtgkqrll
Flexible Loop (DISEMBL)
mwasqqnssqlsnkqqKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKknflprkpqeqvsvssdgdqdLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGsktvlaigpgpkslvdsvtgkqrll
Low Complexity Region (SEG)
MWAsqqnssqlsnkqqkqEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL
Disordered region (IsUnstruct)
**********************LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYV************************KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSA***TVLA*******************
Disordered Region (DISOPRED)
**************************FRPENFIPGLVIGFIFGMLLDLS******************************LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL
Disordered Region (DISEMBL)
**********************LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPR************DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSL***********
Disordered Region (DISPRO)
*******************KVSLAVSFRPENFIPGLVIGFIFGMLLDLSK**************************DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWASQQNSSQLSNKQQKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q3ZBL5	179	Peptidyl-tRNA hydrolase 2	yes	no	0.726	0.787	0.431	1e-28
Q9Y3E5	179	Peptidyl-tRNA hydrolase 2	yes	no	0.860	0.932	0.379	4e-28
Q8R2Y8	181	Peptidyl-tRNA hydrolase 2	yes	no	0.592	0.635	0.478	1e-26
O97067	186	Probable peptidyl-tRNA hy	yes	no	0.608	0.634	0.474	8e-25
Q976I0	121	Peptidyl-tRNA hydrolase O	yes	no	0.587	0.942	0.466	2e-23
Q877G5	120	Peptidyl-tRNA hydrolase O	yes	no	0.592	0.958	0.425	7e-22
Q8U0N0	119	Peptidyl-tRNA hydrolase O	yes	no	0.587	0.957	0.456	1e-21
Q980V1	120	Peptidyl-tRNA hydrolase O	yes	no	0.592	0.958	0.428	2e-21
A4YD82	117	Peptidyl-tRNA hydrolase O	yes	no	0.592	0.982	0.444	3e-21
P34222	208	Peptidyl-tRNA hydrolase 2	yes	no	0.592	0.552	0.396	3e-21

>sp|Q3ZBL5|PTH2_BOVIN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 12/153 (7%)

Query: 42  FGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQ-DLKLALVVRQDLKMGSGKIASQ 100
           FGML       K+ V++ N     P  +   S  G+  + K+ LVVR DLKMG GK+A+Q
Sbjct: 37  FGML------PKSSVRETN-----PDTETEASILGESGEYKMILVVRNDLKMGKGKVAAQ 85

Query: 101 CAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVAD 160
           C+HAA   Y ++ + +  LL++WE CGQPK+VV   +++ + +L   A+  GL   ++ D
Sbjct: 86  CSHAAVSAYKQIQRRNPELLKEWEYCGQPKVVVKAPDEETLVELLTHAKVLGLTVSLIQD 145

Query: 161 AGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
           AGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct: 146 AGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9Y3E5|PTH2_HUMAN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 12/179 (6%)

Query: 22  SLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSD------ 75
           SL + +       GL +G   GM L     G +       LP+    +    ++      
Sbjct: 5   SLVMEYLAHPSTLGLAVGVACGMCL-----GWSLRVCFGMLPKSKTSKTHTDTESEASIL 59

Query: 76  GDQ-DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVT 134
           GD  + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV 
Sbjct: 60  GDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVK 119

Query: 135 CKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
             +++ +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct: 120 APDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178

Promotes caspase-independent apoptosis by regulating the function of two transcriptional regulators, AES and TLE1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8R2Y8|PTH2_MOUSE Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 77/115 (66%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
           + K+ LVVR DLKMG GK+A+QC+HAA   Y +  +    +L++WE CGQPK+VV   ++
Sbjct: 66  EYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDE 125

Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
             + +L   A+  GL   ++ DAGRTQ+  GS+TVL IGPGP  L+D VTG  +L
Sbjct: 126 DTLIQLLTHAKTLGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|O97067|PTH2_DROME Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster GN=CG1307 PE=2 SV=2

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 74/118 (62%)

Query: 77  DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCK 136
           + + K+ LVVR DLKMG GKIA+QC H A G Y   +     LLR WE CG  KI V  +
Sbjct: 69  NDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVE 128

Query: 137 NQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           ++ E+  + + AE   L T ++ DAGRTQ+ A SKTVLA+GP   + +D VTG  +LL
Sbjct: 129 SEAELMAIKKEAERQQLNTCLIRDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKLL 186

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q976I0|PTH_SULTO Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pth PE=3 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 4/118 (3%)

Query: 81  KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHL----LRKWEQCGQPKIVVTCK 136
           K+ +VVR DL MG GKIA+Q AHAA  +  +++ S   L    L KW + GQPKIVV   
Sbjct: 4   KMVIVVRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKVP 63

Query: 137 NQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           +  E+NK +E A    LPT ++ DAG+TQ+  G+ T + IGP P  LVD +TG  +LL
Sbjct: 64  SLDELNKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKLL 121

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q877G5|PTH_SULAC Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=pth PE=3 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 5/120 (4%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD-----RHLLRKWEQCGQPKIVVT 134
           +K+A++VR DL MG GKIA+Q AHAA  +  E++Q       +  L  W   GQPKIV+ 
Sbjct: 1   MKMAVLVRTDLDMGKGKIAAQVAHAAVSLVLEIVQKRSKAEWKEWLEMWINQGQPKIVLK 60

Query: 135 CKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
            KN  E+ + +  A  +GLP  ++ DAG+TQ+  G+ T   IGPGP+ ++D++TG  +LL
Sbjct: 61  VKNLDELLEKYNKALQSGLPATIIQDAGKTQIEPGTITCAGIGPGPEEMIDNITGDLKLL 120

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8U0N0|PTH_PYRFU Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pth PE=3 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 70/114 (61%)

Query: 81  KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQE 140
           K  +V R DLK+  GK+A Q AH A     E  +  R     W + GQ K+VV  +N++E
Sbjct: 6   KQVIVARSDLKLSKGKLAVQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKAQNEEE 65

Query: 141 MNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           + KL   AE  GLPT ++ DAG T++  G+ TVLAIGPGP+ +VD VTG  +LL
Sbjct: 66  LFKLKSEAEKLGLPTALIRDAGLTEIPPGTITVLAIGPGPEEVVDKVTGHLKLL 119

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q980V1|PTH_SULSO Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pth PE=1 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 4/119 (3%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTC 135
           +K+ +VVR D+KMG GKIA+Q AHAA  +   ++ S+    +  L +W   GQPKI+V  
Sbjct: 2   IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61

Query: 136 KNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
            +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++LVDS+TG  +LL
Sbjct: 62  NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|A4YD82|PTH_METS5 Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pth PE=3 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 2/117 (1%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQ--SDRHLLRKWEQCGQPKIVVTCKN 137
           +K+ ++VR D+ MG GKIA+Q AHAA  +  + M   S R  L  W   GQPK+VV   +
Sbjct: 1   MKMVVMVRTDINMGKGKIAAQVAHAAVSLVLDCMSRSSWRDWLDSWLHEGQPKVVVKVSS 60

Query: 138 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
            +++    + A + GLPT V++DAGRTQV  G+ T   IGPGP  L+D +TG  +LL
Sbjct: 61  LEDLLSRVDKARSQGLPTTVISDAGRTQVEPGTVTCAGIGPGPDDLIDKITGDLKLL 117

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|P34222|PTH2_YEAST Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTH2 PE=1 SV=2

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 77/121 (63%), Gaps = 6/121 (4%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRH------LLRKWEQCGQPKIV 132
           ++++ALV+RQDL M  GKIA+QC HAA   +  +  +         + ++W   GQ KI 
Sbjct: 87  EVRMALVIRQDLGMTKGKIAAQCCHAALSCFRHIATNPARASYNPIMTQRWLNAGQAKIT 146

Query: 133 VTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQR 192
           + C ++  M++L+  A + G+   V+ DAGRTQ++AGS TVL +GP PK+++D +TG  +
Sbjct: 147 LKCPDKFTMDELYAKAISLGVNAAVIHDAGRTQIAAGSATVLGLGPAPKAVLDQITGDLK 206

Query: 193 L 193
           L
Sbjct: 207 L 207

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224092280	190	predicted protein [Populus trichocarpa]	0.979	1.0	0.762	1e-77
351727895	196	uncharacterized protein LOC100527852 [Gl	0.886	0.877	0.791	2e-73
449436880	192	PREDICTED: peptidyl-tRNA hydrolase 2, mi	0.963	0.973	0.746	3e-73
388496964	195	unknown [Lotus japonicus]	0.886	0.882	0.761	1e-72
255550922	195	peptidyl-tRNA hydrolase, putative [Ricin	0.994	0.989	0.724	3e-71
357466669	193	Peptidyl-tRNA hydrolase [Medicago trunca	0.886	0.891	0.763	3e-71
240256130	193	Peptidyl-tRNA hydrolase II (PTH2) family	0.989	0.994	0.692	4e-71
359476348	193	PREDICTED: probable peptidyl-tRNA hydrol	0.989	0.994	0.723	1e-70
357466671	174	Peptidyl-tRNA hydrolase [Medicago trunca	0.742	0.827	0.765	4e-58
356554523	255	PREDICTED: peptidyl-tRNA hydrolase 2, mi	0.886	0.674	0.655	7e-57

>gi|224092280|ref|XP_002309541.1| predicted protein [Populus trichocarpa] gi|118485090|gb|ABK94408.1| unknown [Populus trichocarpa] gi|222855517|gb|EEE93064.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 160/194 (82%), Gaps = 4/194 (2%)

Query: 1   MWASQQNSSQLSNKQQKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKN 60
           MW   +N SQLSNK  KQEK  LA SFRPENFIPGL+IGFIFG+ LDLS P KN  KKKN
Sbjct: 1   MWGVSKNPSQLSNK--KQEKGGLAESFRPENFIPGLIIGFIFGLFLDLSNPSKNQTKKKN 58

Query: 61  FLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLL 120
           FLP K Q+Q     DGD++LK+  VVRQDLKMG+GKIASQCAHAATGMYAEL+ S R LL
Sbjct: 59  FLPGKSQQQSL--EDGDKELKMVFVVRQDLKMGAGKIASQCAHAATGMYAELIYSHRILL 116

Query: 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGP 180
           R+WEQ GQPKIVVTCKNQQEMNK+ E AEN GLPTF VADAGRTQVSAGSKTVLA+GPGP
Sbjct: 117 RQWEQSGQPKIVVTCKNQQEMNKIREAAENIGLPTFAVADAGRTQVSAGSKTVLAVGPGP 176

Query: 181 KSLVDSVTGKQRLL 194
           K  VDSVTGK RLL
Sbjct: 177 KESVDSVTGKLRLL 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727895|ref|NP_001238456.1| uncharacterized protein LOC100527852 [Glycine max] gi|255633376|gb|ACU17045.1| unknown [Glycine max]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 154/173 (89%), Gaps = 1/173 (0%)

Query: 23  LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQ-VSVSSDGDQDLK 81
           LA SF+ ENFIPGLVIGFIFG+LLDLSK G+N++ KK     +PQ+Q +SVSS+ DQ+LK
Sbjct: 24  LAGSFKAENFIPGLVIGFIFGLLLDLSKSGRNHLSKKICSSARPQQQQISVSSNADQELK 83

Query: 82  LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 141
           + LVVRQDLKM SGKIASQCAHAATGMYAELMQSDR+LLR+WEQCGQPKIVVTC+NQQEM
Sbjct: 84  MVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRYLLRRWEQCGQPKIVVTCRNQQEM 143

Query: 142 NKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           NKL E AE+ GLPTFVVADAGRTQVSAGSKTVLA+GPGPKS VDSVTG+  LL
Sbjct: 144 NKLAEAAESIGLPTFVVADAGRTQVSAGSKTVLAVGPGPKSSVDSVTGRLPLL 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436880|ref|XP_004136220.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucumis sativus] gi|449517243|ref|XP_004165655.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucumis sativus]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/189 (74%), Positives = 158/189 (83%), Gaps = 2/189 (1%)

Query: 8   SSQLSNKQQ--KQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRK 65
           +S+ S K+Q  K EK  L+VSF+PENFIPGLVIGFI G+ LDLSKP K   KK  FLP K
Sbjct: 4   ASKSSRKKQQVKPEKEWLSVSFKPENFIPGLVIGFILGLFLDLSKPSKGNAKKGYFLPSK 63

Query: 66  PQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQ 125
            Q+    S++GDQ+LKL LVVRQDLKMGSGKIASQCAHAATG+YAELMQS R+LLR+WE 
Sbjct: 64  YQQLSPASNNGDQELKLVLVVRQDLKMGSGKIASQCAHAATGLYAELMQSHRNLLRQWEL 123

Query: 126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVD 185
           CGQPKIVVTCKNQ EMNKL + AEN GLPTFVVADAGRTQVSAGSKTVLAIGPGPK  +D
Sbjct: 124 CGQPKIVVTCKNQHEMNKLKDSAENIGLPTFVVADAGRTQVSAGSKTVLAIGPGPKEAID 183

Query: 186 SVTGKQRLL 194
           +V+GK RLL
Sbjct: 184 AVSGKLRLL 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496964|gb|AFK36548.1| unknown [Lotus japonicus]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 151/172 (87%)

Query: 23  LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQDLKL 82
           LA SF+PENFIPGL+IGFIFGM LDLSKP +N + KK F P K Q+ +++S +GD++ K+
Sbjct: 24  LAGSFKPENFIPGLIIGFIFGMFLDLSKPHRNLLSKKIFSPSKVQQHLTLSGNGDREFKM 83

Query: 83  ALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMN 142
            LVVRQDLKM SGK+ASQCAHAATGMYAELMQSDR LLR+WEQCGQPKIVVTC+NQQEMN
Sbjct: 84  VLVVRQDLKMKSGKVASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQQEMN 143

Query: 143 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           KL E AE+ GLPTFVVADAGRT+VSAGSKTVLA+GPGPK+ VDSVTG+  LL
Sbjct: 144 KLKETAESIGLPTFVVADAGRTEVSAGSKTVLAVGPGPKASVDSVTGRLALL 195

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550922|ref|XP_002516509.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223544329|gb|EEF45850.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 159/196 (81%), Gaps = 3/196 (1%)

Query: 1   MWASQQNSSQLSNK-QQKQEKVS-LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKK 58
           MW   +N SQL NK Q KQE+   L  SFR ENFIPGLVIGFIFG+ LDL+ P KN  KK
Sbjct: 1   MWGLSKNPSQLLNKKQHKQEREGGLTESFRLENFIPGLVIGFIFGLFLDLTNPIKNSFKK 60

Query: 59  KNFLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRH 118
           KNF   K Q+Q  VS +GD +LK+ LVVRQDLKMG+GKIASQCAHAATGMY+ELMQS + 
Sbjct: 61  KNF-SGKSQQQSLVSYNGDPELKMVLVVRQDLKMGAGKIASQCAHAATGMYSELMQSQQL 119

Query: 119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGP 178
           LL +WEQCGQPKIVVTC+NQQEMNKL E A++ GLPTFVVADAGRTQV AGSKTVLAIGP
Sbjct: 120 LLSRWEQCGQPKIVVTCRNQQEMNKLQEAADSIGLPTFVVADAGRTQVLAGSKTVLAIGP 179

Query: 179 GPKSLVDSVTGKQRLL 194
           G K+ VD+VTGK RLL
Sbjct: 180 GSKASVDAVTGKLRLL 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466669|ref|XP_003603619.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|355492667|gb|AES73870.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|388514387|gb|AFK45255.1| unknown [Medicago truncatula]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 153/173 (88%), Gaps = 1/173 (0%)

Query: 23  LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDG-DQDLK 81
           L+ SF+PENFIPGLVIGFI G+L+DLSKP +N++  K F   K Q Q+SVSS+G DQ+LK
Sbjct: 21  LSGSFKPENFIPGLVIGFICGLLIDLSKPTRNHLSNKIFSSTKLQNQLSVSSNGADQELK 80

Query: 82  LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 141
           + LVVRQDLKM SGKIASQCAHAATGMYAELM+S+R LLR+WEQCGQPKIVVTCKNQQEM
Sbjct: 81  MVLVVRQDLKMKSGKIASQCAHAATGMYAELMRSNRSLLRQWEQCGQPKIVVTCKNQQEM 140

Query: 142 NKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           NKL E AE+ GLPTFVV+DAGRTQVSAGSKTVLA+GPGPK+++DSVTG+  LL
Sbjct: 141 NKLTEAAESIGLPTFVVSDAGRTQVSAGSKTVLAVGPGPKAILDSVTGRLSLL 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256130|ref|NP_974671.4| Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana] gi|332660741|gb|AEE86141.1| Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/195 (69%), Positives = 161/195 (82%), Gaps = 3/195 (1%)

Query: 1   MWASQQNSSQLSNKQQKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKN 60
           MW S +NSSQ   +  +QEK S++VSFR EN IPG+VIGFI GM+LDLS+   + VK+  
Sbjct: 1   MWPSSRNSSQ--PQAMRQEKKSISVSFRAENLIPGVVIGFIIGMILDLSQQVTSPVKRSR 58

Query: 61  FLPRKPQEQVSVSSDG-DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHL 119
            L  K Q+Q SV  +G DQ+LK+ LVVRQDLKM +GKIASQCAHAATGMYAELMQSDR+L
Sbjct: 59  LLSSKVQKQSSVPGNGKDQELKMVLVVRQDLKMRTGKIASQCAHAATGMYAELMQSDRYL 118

Query: 120 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179
           LR+WE+ GQPKIVVTCKNQQEMNK+ E AE+ GLPTFVVADAGRT+V+AGS+TVLA+GPG
Sbjct: 119 LRRWEENGQPKIVVTCKNQQEMNKITEAAESVGLPTFVVADAGRTEVAAGSRTVLAVGPG 178

Query: 180 PKSLVDSVTGKQRLL 194
           PK LVDS+TG+  LL
Sbjct: 179 PKELVDSITGRLALL 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476348|ref|XP_002281191.2| PREDICTED: probable peptidyl-tRNA hydrolase 2-like [Vitis vinifera] gi|296081837|emb|CBI20842.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 161/195 (82%), Gaps = 3/195 (1%)

Query: 1   MWASQQNSSQLSNKQQKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKN 60
           M  S +NSSQ  NKQ KQE+   AV+F+PENFIPGL+IGFIFG  LDLSK  KN  +  N
Sbjct: 1   MLGSFRNSSQ-PNKQ-KQEREWFAVNFKPENFIPGLIIGFIFGFFLDLSKVPKNQPRHNN 58

Query: 61  -FLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHL 119
             L ++ Q+Q  VSS+ D++LK+ LVVRQDLKMG+GKIASQCAHAATGMYAEL+QS R L
Sbjct: 59  SLLGKRQQQQQLVSSNSDEELKMVLVVRQDLKMGTGKIASQCAHAATGMYAELVQSQRSL 118

Query: 120 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179
           LR+WEQCGQ KIVVTCKNQQEMNKL E AE+ GLPTFVVADAGRTQV +GSKTVLAIGPG
Sbjct: 119 LRQWEQCGQAKIVVTCKNQQEMNKLKEAAESIGLPTFVVADAGRTQVLSGSKTVLAIGPG 178

Query: 180 PKSLVDSVTGKQRLL 194
            K+ VDS+TGKQRLL
Sbjct: 179 RKASVDSITGKQRLL 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466671|ref|XP_003603620.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|355492668|gb|AES73871.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|388498994|gb|AFK37563.1| unknown [Medicago truncatula]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 23  LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDG-DQDLK 81
           L+ SF+PENFIPGLVIGFI G+L+DLSKP +N++  K F   K Q Q+SVSS+G DQ+LK
Sbjct: 21  LSGSFKPENFIPGLVIGFICGLLIDLSKPTRNHLSNKIFSSTKLQNQLSVSSNGADQELK 80

Query: 82  LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 141
           + LVVRQDLKM SGKIASQCAHAATGMYAELM+S+R LLR+WEQCGQPKIVVTCKNQQEM
Sbjct: 81  MVLVVRQDLKMKSGKIASQCAHAATGMYAELMRSNRSLLRQWEQCGQPKIVVTCKNQQEM 140

Query: 142 NKLWEVAENTGLPTFVVADAGRTQV 166
           NKL E AE+ GLPTFVV+DAGRTQV
Sbjct: 141 NKLTEAAESIGLPTFVVSDAGRTQV 165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554523|ref|XP_003545595.1| PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like [Glycine max]

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 141/174 (81%), Gaps = 2/174 (1%)

Query: 1   MWASQQNSSQLSNKQQKQEKVS-LAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKK 59
           M+ S   +S   N+QQ+++K   LA SF+ ENFIP L+IGFIFG+LLDLSKP +N++ KK
Sbjct: 1   MFLSILTTSHSRNQQQQKQKGEWLAGSFKAENFIPVLIIGFIFGLLLDLSKPSRNHLSKK 60

Query: 60  NFLPRKPQEQ-VSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRH 118
            F   KPQ+Q ++VSS+GDQ+LK+ LVV+QD  M SGKIASQCAHAATG+YAELMQSDR 
Sbjct: 61  MFSSAKPQQQQLAVSSNGDQELKMVLVVQQDPNMKSGKIASQCAHAATGIYAELMQSDRC 120

Query: 119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKT 172
           LLR+W+QCGQPKIVVTC+NQQEMNKL E AE+  LPTFVVAD GRTQ +  +K+
Sbjct: 121 LLRRWDQCGQPKIVVTCRNQQEMNKLTEAAESIHLPTFVVADVGRTQKAVEAKS 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2123743	193	AT4G32900 [Arabidopsis thalian	0.907	0.911	0.717	8.8e-63
UNIPROTKB|Q3ZBL5	179	PTRH2 "Peptidyl-tRNA hydrolase	0.783	0.849	0.406	3.1e-28
UNIPROTKB|J3KQ48	180	PTRH2 "Peptidyl-tRNA hydrolase	0.881	0.95	0.388	3.1e-28
UNIPROTKB|Q9Y3E5	179	PTRH2 "Peptidyl-tRNA hydrolase	0.881	0.955	0.388	3.1e-28
UNIPROTKB|E2RND8	179	PTRH2 "Uncharacterized protein	0.592	0.642	0.486	1.7e-27
UNIPROTKB|F1S227	179	LOC100519562 "Uncharacterized	0.824	0.893	0.396	1.7e-27
UNIPROTKB|G4NCA2	247	MGG_01099 "Peptidyl-tRNA hydro	0.670	0.526	0.485	2.8e-27
TAIR|locus:2148111	169	AT5G16870 [Arabidopsis thalian	0.829	0.952	0.425	2.8e-27
RGD|1306819	181	Ptrh2 "peptidyl-tRNA hydrolase	0.592	0.635	0.478	9.4e-27
MGI|MGI:2444848	181	Ptrh2 "peptidyl-tRNA hydrolase	0.793	0.850	0.4	1.2e-26

TAIR|locus:2123743 AT4G32900 [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 127/177 (71%), Positives = 150/177 (84%)

Query:    19 EKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDG-D 77
             EK S++VSFR EN IPG+VIGFI GM+LDLS+   + VK+   L  K Q+Q SV  +G D
Sbjct:    17 EKKSISVSFRAENLIPGVVIGFIIGMILDLSQQVTSPVKRSRLLSSKVQKQSSVPGNGKD 76

Query:    78 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKN 137
             Q+LK+ LVVRQDLKM +GKIASQCAHAATGMYAELMQSDR+LLR+WE+ GQPKIVVTCKN
Sbjct:    77 QELKMVLVVRQDLKMRTGKIASQCAHAATGMYAELMQSDRYLLRRWEENGQPKIVVTCKN 136

Query:   138 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
             QQEMNK+ E AE+ GLPTFVVADAGRT+V+AGS+TVLA+GPGPK LVDS+TG+  LL
Sbjct:   137 QQEMNKITEAAESVGLPTFVVADAGRTEVAAGSRTVLAVGPGPKELVDSITGRLALL 193

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q3ZBL5 PTRH2 "Peptidyl-tRNA hydrolase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 65/160 (40%), Positives = 100/160 (62%)

Query:    35 GLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQ-DLKLALVVRQDLKMG 93
             G+ +G+  G+ +      K+ V++ N     P  +   S  G+  + K+ LVVR DLKMG
Sbjct:    26 GVCLGW--GLRMRFGMLPKSSVRETN-----PDTETEASILGESGEYKMILVVRNDLKMG 78

Query:    94 SGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGL 153
              GK+A+QC+HAA   Y ++ + +  LL++WE CGQPK+VV   +++ + +L   A+  GL
Sbjct:    79 KGKVAAQCSHAAVSAYKQIQRRNPELLKEWEYCGQPKVVVKAPDEETLVELLTHAKVLGL 138

Query:   154 PTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
                ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   139 TVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178

GO:0005739 "mitochondrion" evidence=IEA

GO:2000811 "negative regulation of anoikis" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|J3KQ48 PTRH2 "Peptidyl-tRNA hydrolase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 68/175 (38%), Positives = 100/175 (57%)

Query:    22 SLAVSFRPENFIPGLVIGFIFGMLLDLSKP---GKNYVKKKNFLPRKPQEQVSVSSDGDQ 78
             SL + +       GL +G   GM L  S     G     K +      + + S+  D  +
Sbjct:     6 SLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGE 65

Query:    79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
               K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   ++
Sbjct:    66 -YKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 124

Query:   139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
             + +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   125 ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 179

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|Q9Y3E5 PTRH2 "Peptidyl-tRNA hydrolase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 68/175 (38%), Positives = 100/175 (57%)

Query:    22 SLAVSFRPENFIPGLVIGFIFGMLLDLSKP---GKNYVKKKNFLPRKPQEQVSVSSDGDQ 78
             SL + +       GL +G   GM L  S     G     K +      + + S+  D  +
Sbjct:     5 SLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGE 64

Query:    79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
               K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   ++
Sbjct:    65 -YKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 123

Query:   139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
             + +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   124 ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IMP;IDA

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0005829 "cytosol" evidence=IMP

GO:2000210 "positive regulation of anoikis" evidence=IMP

GO:2000811 "negative regulation of anoikis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RND8 PTRH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 56/115 (48%), Positives = 81/115 (70%)

Query:    79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
             + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  LL++WE CGQPK+VV   ++
Sbjct:    64 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKQWEYCGQPKVVVKAPDE 123

Query:   139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
             + + +L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   124 ETLVELLTHAKMLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178

GO:2000811 "negative regulation of anoikis" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|F1S227 LOC100519562 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 65/164 (39%), Positives = 98/164 (59%)

Query:    31 NFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQ-DLKLALVVRQD 89
             +F  G+  G   G  L + + G   + K +        +   S  G+  + K+ LVVR D
Sbjct:    18 SFAAGVACGMCLGWGLRV-RFGM--IPKSSVSETDTDTETEASILGESGEYKMILVVRND 74

Query:    90 LKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAE 149
             LKMG GK+A+QC+HAA   Y ++ + +  LL++WE CGQPK+VV   +++ + +L   A+
Sbjct:    75 LKMGKGKVAAQCSHAAVSAYKQIQRRNPELLQQWEYCGQPKVVVKAPDEETLVELLTHAK 134

Query:   150 NTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
               GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   135 MLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPVDLIDKVTGHLKL 178

GO:2000811 "negative regulation of anoikis" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

UNIPROTKB|G4NCA2 MGG_01099 "Peptidyl-tRNA hydrolase 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 66/136 (48%), Positives = 88/136 (64%)

Query:    65 KPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQ----SDR--H 118
             K   +VS  +D  ++ KL LVVR DL M  GKIA+QC+HA    Y  L +    SD    
Sbjct:   112 KDAVEVSAGADEKEECKLVLVVRTDLGMTKGKIAAQCSHATLACYKVLSRAATKSDAAAR 171

Query:   119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGP 178
             LLR+WE+ GQ KI +  K+Q+E+ +L  VA + G+    + DAGRTQ++AGS TVL +GP
Sbjct:   172 LLRRWERMGQAKIALQVKSQEELEELQGVAHSLGVTAEAIHDAGRTQIAAGSMTVLGVGP 231

Query:   179 GPKSLVDSVTGKQRLL 194
              PKSLVD +TGK +LL
Sbjct:   232 APKSLVDQITGKLKLL 247

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TAIR|locus:2148111 AT5G16870 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/167 (42%), Positives = 101/167 (60%)

Query:    32 FIPGLVIGFIFGMLLDL--SKPGKNYVKK--KNFLPRKPQEQVSVSSDGDQDLKLALVVR 87
             ++  L++G   G  +    SKP    V K  K    + P E +   +D   D K+ LVVR
Sbjct:     5 WLSALIVGAALGYCIGTRRSKPVVAAVDKDIKTQSSKSPLE-IEKLADILDDFKMVLVVR 63

Query:    88 QDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEV 147
              DLKMG GKIA+QC+HA  G+Y +L++     L  WE+C QPK+VV  +++ EM +L E 
Sbjct:    64 NDLKMGKGKIAAQCSHATLGLYKKLVRRAPKALDCWEECAQPKVVVKIEDEDEMLELQER 123

Query:   148 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
             A++  LPT +  DAGRTQ++  S+TV+AI  GP  +VD VTG  +LL
Sbjct:   124 AKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDEVTGGLKLL 169

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

RGD|1306819 Ptrh2 "peptidyl-tRNA hydrolase 2" [Rattus norvegicus (taxid:10116)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 55/115 (47%), Positives = 79/115 (68%)

Query:    79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
             + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   ++
Sbjct:    66 EYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQIQRRNPQVLKEWEYCGQPKVVVKAPDE 125

Query:   139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
               + +L   A+  GL   ++ DAGRTQ+  GS+TVL IGPGP  L+D VTG  +L
Sbjct:   126 DSLIQLLTHAKALGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:2000210 "positive regulation of anoikis" evidence=IEA;ISO

GO:2000811 "negative regulation of anoikis" evidence=IEA;ISO

MGI|MGI:2444848 Ptrh2 "peptidyl-tRNA hydrolase 2" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 64/160 (40%), Positives = 94/160 (58%)

Query:    35 GLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQ-DLKLALVVRQDLKMG 93
             G+ +G+  G+   L    +N   + N   R  +     S  G+  + K+ LVVR DLKMG
Sbjct:    26 GMCLGW--GLRSHLGMFPQNSTSEAN---RDTETGTEASILGESGEYKMILVVRTDLKMG 80

Query:    94 SGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGL 153
              GK+A+QC+HAA   Y +  +    +L++WE CGQPK+VV   ++  + +L   A+  GL
Sbjct:    81 KGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTLIQLLTHAKTLGL 140

Query:   154 PTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
                ++ DAGRTQ+  GS+TVL IGPGP  L+D VTG  +L
Sbjct:   141 TVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:2000210 "positive regulation of anoikis" evidence=ISO

GO:2000811 "negative regulation of anoikis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O13830	PTH2_SCHPO	3, ., 1, ., 1, ., 2, 9	0.355	0.8969	0.8487	yes	no
Q9Y3E5	PTH2_HUMAN	3, ., 1, ., 1, ., 2, 9	0.3798	0.8608	0.9329	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.824
3rd Layer	3.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam01981	116	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2	2e-56
cd02430	115	cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PT	9e-56
cd02407	115	cd02407, PTH2_family, Peptidyl-tRNA hydrolase, typ	8e-51
PRK04322	113	PRK04322, PRK04322, peptidyl-tRNA hydrolase; Provi	7e-41
COG1990	122	COG1990, pth2, Peptidyl-tRNA hydrolase [Translatio	2e-37
TIGR00283	115	TIGR00283, arch_pth2, peptidyl-tRNA hydrolase	7e-37

>gnl|CDD|190182 pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2

 Score =  173 bits (441), Expect = 2e-56
 Identities = 60/116 (51%), Positives = 85/116 (73%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
           + K+ LVVR DLKMG GKIA+QCAHAA G Y + ++++  LL+ W + GQ KIV+   ++
Sbjct: 1   EYKMVLVVRTDLKMGKGKIAAQCAHAAVGAYKKALKANPELLKAWLREGQKKIVLKVNSE 60

Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           +E+ +L E A++ GLPT ++ DAGRTQ++ G+ TVL IGP PK L+D VTG  +LL
Sbjct: 61  EELLELKEKAKSLGLPTSLIQDAGRTQIAPGTVTVLGIGPAPKELIDKVTGHLKLL 116

Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation. Length = 116

>gnl|CDD|239108 cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PTH2)

 Score =  171 bits (437), Expect = 9e-56
 Identities = 62/114 (54%), Positives = 85/114 (74%)

Query: 81  KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQE 140
           K+ LVVR DLKMG GKIA+QCAHAA G Y + M+S+  LLR WE+ GQ KIV+   +++E
Sbjct: 2   KMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEEE 61

Query: 141 MNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           + +L + A++ GLPT ++ DAGRTQ++ G+ TVL IGP P+ L+D VTG  +LL
Sbjct: 62  LLELKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL 115

Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes. Length = 115

>gnl|CDD|239091 cd02407, PTH2_family, Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

 Score =  159 bits (404), Expect = 8e-51
 Identities = 59/115 (51%), Positives = 78/115 (67%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
            K+ +VVR DLKMG GKIA+QCAHAA   Y + M+    LLR WE  GQ K+V+   +++
Sbjct: 1   YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEE 60

Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+ +L + A+  GLP  ++ DAGRTQ+  G+ TVLAIGP PK  VD VTG  +LL
Sbjct: 61  ELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. Length = 115

>gnl|CDD|235280 PRK04322, PRK04322, peptidyl-tRNA hydrolase; Provisional

 Score =  133 bits (338), Expect = 7e-41
 Identities = 51/112 (45%), Positives = 73/112 (65%)

Query: 83  ALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMN 142
            +VVR DLKMG GK+A+Q AHAA   Y +  +S+R  L +W   GQ K+V+   +++E+ 
Sbjct: 2   VIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEELL 61

Query: 143 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           +L E AE  GLPT ++ DAG TQ+  G+ T L IGP P+  +D +TG  +LL
Sbjct: 62  ELKEKAERLGLPTALIRDAGLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL 113

Length = 113

>gnl|CDD|224901 COG1990, pth2, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  125 bits (316), Expect = 2e-37
 Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 2/118 (1%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCK 136
             K+ +VVR DLKM  GK+A+Q AHAA       ++S      L +W + GQ KIV+   
Sbjct: 5   QYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVG 64

Query: 137 NQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           +  E+ +L + AE+ GLPT ++ DAGRTQ+  G+ TVL IGP P+ ++D +TG  +LL
Sbjct: 65  SLDELLELHQKAESLGLPTALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL 122

Length = 122

>gnl|CDD|161803 TIGR00283, arch_pth2, peptidyl-tRNA hydrolase

 Score =  124 bits (312), Expect = 7e-37
 Identities = 44/115 (38%), Positives = 70/115 (60%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
           +K+ +V+R DL MG GKIA+Q  HAA   + +  + +  L RKW   GQ K+V+   + +
Sbjct: 1   MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLE 60

Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+ +++  AE+ GL T ++ DAG TQ+  G+ T + IGP     +D +TG  +LL
Sbjct: 61  ELLEIYHKAESLGLVTGLIRDAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL 115

This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447 [Protein synthesis, Other]. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG3282	190	consensus Uncharacterized conserved protein [Funct	100.0
TIGR00283	115	arch_pth2 peptidyl-tRNA hydrolase. This model desc	100.0
cd02430	115	PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Pepti	100.0
PF01981	116	PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR0	100.0
PRK04322	113	peptidyl-tRNA hydrolase; Provisional	100.0
cd02407	115	PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)	100.0
COG1990	122	pth2 Peptidyl-tRNA hydrolase [Translation, ribosom	100.0
cd02429	116	PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_l	100.0
KOG3305	121	consensus Uncharacterized conserved protein [Funct	99.79
PF09391	133	DUF2000: Protein of unknown function (DUF2000); In	98.13
COG4954	135	Uncharacterized protein conserved in bacteria [Fun	88.12

>KOG3282 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.5e-52  Score=344.04  Aligned_cols=131  Identities=53%  Similarity=0.861  Sum_probs=125.3

Q ss_pred             CCCcccccccCCCCCCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHH
Q 029386           64 RKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNK  143 (194)
Q Consensus        64 ~~~~~~~~~~~~~~~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~  143 (194)
                      ++.+.++....+..+++|||||||+||+|++|||||||||||+++|.++++++|..+++|+++||+||||+|+|+++|.+
T Consensus        60 sk~~~e~~~l~~~~~~~KMvLVVR~DLkMgkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~~GQ~KIvvk~~~e~~l~~  139 (190)
T KOG3282|consen   60 SKASSESEVLGDLKGNFKMVLVVRNDLKMGKGKIAAQCAHAALGVYKHLMQRDPELLRRWENCGQAKIVVKAESEEELME  139 (190)
T ss_pred             ccchhhhhcccCcCCceEEEEEEeccCCCccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCceEEEEcCCHHHHHH
Confidence            34455566678888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          144 LWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       144 L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |++.|+..|+++++|+|||||||+|||.||++|||+|.+.||.||||||||
T Consensus       140 l~~~A~~~gl~t~~i~DAGrTQIa~gS~TVl~Igpg~~~~id~VTG~LKL~  190 (190)
T KOG3282|consen  140 LQKDAKKLGLYTHLIQDAGRTQIAPGSRTVLGIGPGPVEVIDSVTGHLKLY  190 (190)
T ss_pred             HHHHHHHcCCcEEEEEcCCccccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence            999999999999999999999999999999999999999999999999997

>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase

Probab=100.00  E-value=1.3e-47  Score=299.15  Aligned_cols=115  Identities=38%  Similarity=0.629  Sum_probs=112.7

Q ss_pred             eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386           80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA  159 (194)
Q Consensus        80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~  159 (194)
                      +||||+||+||+||+||+||||||||+++|.++++.+++.+++|++.||+||||+++|++||++|.++|++.||++++|+
T Consensus         1 ~k~vlvVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~   80 (115)
T TIGR00283         1 MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIR   80 (115)
T ss_pred             CeEEEEEeCCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            69999999999999999999999999999998888889999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |||||||||||.|||||||+|++.||+||||||||
T Consensus        81 DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl  115 (115)
T TIGR00283        81 DAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL  115 (115)
T ss_pred             cCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence            99999999999999999999999999999999997

This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.

>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2)

Probab=100.00  E-value=6.6e-47  Score=295.08  Aligned_cols=115  Identities=54%  Similarity=0.878  Sum_probs=112.9

Q ss_pred             eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386           80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA  159 (194)
Q Consensus        80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~  159 (194)
                      +|||||||+||+||+||+||||||||+++|..+++.+++.+++|++.||+||||+++|+++|.+|.++|++.||++++|+
T Consensus         1 ~K~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~   80 (115)
T cd02430           1 YKMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQ   80 (115)
T ss_pred             CEEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            69999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |||||||||||.|||||||+|++.||+||||||||
T Consensus        81 DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~  115 (115)
T cd02430          81 DAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL  115 (115)
T ss_pred             eCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence            99999999999999999999999999999999997

Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.

>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation

Probab=100.00  E-value=3.8e-47  Score=294.39  Aligned_cols=116  Identities=51%  Similarity=0.863  Sum_probs=110.9

Q ss_pred             CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029386           79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV  158 (194)
Q Consensus        79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V  158 (194)
                      |+|||||||+||+||+||+||||||||+++|.++.+++++.++.|+.+||+||||+++|+++|++|.++|+..|||+++|
T Consensus         1 ~~k~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i   80 (116)
T PF01981_consen    1 ELKMVIVVRKDLKMSKGKIAAQCAHAAVAAYAKLHEDDPEWLREWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI   80 (116)
T ss_dssp             SEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE
T ss_pred             CeEEEEEEECCCCCCcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence            68999999999999999999999999999999988788899999999999999999999999999999999999999999


Q ss_pred             EcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          159 ADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       159 ~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      +|||||||||||.|||||||+|++.||+||||||||
T Consensus        81 ~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~  116 (116)
T PF01981_consen   81 RDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL  116 (116)
T ss_dssp             EETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred             EECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence            999999999999999999999999999999999997

; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.

>PRK04322 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1.4e-46  Score=292.46  Aligned_cols=113  Identities=45%  Similarity=0.724  Sum_probs=111.0

Q ss_pred             EEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029386           82 LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA  161 (194)
Q Consensus        82 mVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DA  161 (194)
                      ||||||+||+||+||+||||||||+++|.++++++++.+++|+..||+||||+++|+++|++|.++|++.||++++|+||
T Consensus         1 ~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DA   80 (113)
T PRK04322          1 QVIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDA   80 (113)
T ss_pred             CEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence            89999999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          162 GRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       162 GrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |||||||||.|||||||+|++.||+||||||||
T Consensus        81 G~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl  113 (113)
T PRK04322         81 GLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL  113 (113)
T ss_pred             CCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence            999999999999999999999999999999997

>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

Probab=100.00  E-value=3.4e-46  Score=290.88  Aligned_cols=115  Identities=51%  Similarity=0.815  Sum_probs=112.7

Q ss_pred             eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386           80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA  159 (194)
Q Consensus        80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~  159 (194)
                      +|||||||+||+||+||+||||||||+++|.+++..++..++.|+.+||+||||+++|+++|++|.++|++.||++++|+
T Consensus         1 ~k~vivVr~dl~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~   80 (115)
T cd02407           1 YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ   80 (115)
T ss_pred             CEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            69999999999999999999999999999999988888899999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |||||||||||.|||||||+|++.||+||||||||
T Consensus        81 DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~  115 (115)
T cd02407          81 DAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL  115 (115)
T ss_pred             ECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence            99999999999999999999999999999999997

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.

>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-41  Score=266.61  Aligned_cols=118  Identities=43%  Similarity=0.684  Sum_probs=113.7

Q ss_pred             CCCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhC--HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029386           77 DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLP  154 (194)
Q Consensus        77 ~~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~--~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp  154 (194)
                      ..++||+|+||.||+|++||+|||||||++.++..+++.+  ++++++|++.||+||||+|++++||.++.++|+..|+|
T Consensus         3 ~~~~k~vIvVr~Dl~m~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~   82 (122)
T COG1990           3 RGQYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVGSLDELLELHQKAESLGLP   82 (122)
T ss_pred             cccceeEEEEecccccccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCh
Confidence            3579999999999999999999999999999999998766  47899999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          155 TFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       155 ~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      +.+|+|||+|||||||.|||+|||+|.+.+|.|||+||||
T Consensus        83 ~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~  122 (122)
T COG1990          83 TALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL  122 (122)
T ss_pred             HHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence            9999999999999999999999999999999999999997

>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like

Probab=100.00  E-value=3.9e-39  Score=252.04  Aligned_cols=109  Identities=22%  Similarity=0.265  Sum_probs=101.2

Q ss_pred             eeEEEEEeCCC----CCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHH---HhCCCCeEEEecCCHHHHHHHHHHHHHCC
Q 029386           80 LKLALVVRQDL----KMGSGKIASQCAHAATGMYAELMQSDRHLLRKW---EQCGQPKIVVTCKNQQEMNKLWEVAENTG  152 (194)
Q Consensus        80 ~kmVlVVR~DL----~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W---~~~G~~KIVLk~~~e~eL~~L~~~A~~~g  152 (194)
                      +.||||||+||    +|++||+||||||||+++|+. .+++++.+++|   ..+||+||||+|+||+||.+|.++|++.|
T Consensus         1 ~vq~ivVR~DL~~~~~m~kGkiaAQ~aHAav~a~~~-~~~~~~~~~~~~~~~~~g~~KVVLkv~~e~eL~~L~~~a~~~g   79 (116)
T cd02429           1 LVQYVILRRDLQTKLSWPLGAVIAQACHAAVAVIHL-FRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENS   79 (116)
T ss_pred             CEEEEEEeccccccCCCCccHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence            47999999999    999999999999999999865 45678876666   23899999999999999999999999999


Q ss_pred             CCeEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          153 LPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       153 lp~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |++++|     ||+||||.|||||||+|++.||++|||||||
T Consensus        80 i~~~l~-----te~p~gt~T~LaigP~~~~~id~it~~LkLl  116 (116)
T cd02429          80 IKHKLW-----IEQPENIPTCIALKPYPKETVASYLKKLKLL  116 (116)
T ss_pred             CCeEEE-----EEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence            999997     8999999999999999999999999999997

Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.

>KOG3305 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=6.7e-20  Score=140.36  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=100.4

Q ss_pred             CCCeeEEEEEeCCC----CCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHH---hCCCCeEEEecCCHHHHHHHHHHHH
Q 029386           77 DQDLKLALVVRQDL----KMGSGKIASQCAHAATGMYAELMQSDRHLLRKWE---QCGQPKIVVTCKNQQEMNKLWEVAE  149 (194)
Q Consensus        77 ~~~~kmVlVVR~DL----~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~---~~G~~KIVLk~~~e~eL~~L~~~A~  149 (194)
                      ++.+.||||+|+||    .|+.|.+++|.|||+.++.+. .+.++..+.+-.   .+.|+||+|++++|..|..|.++.+
T Consensus         1 ~~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~-~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk   79 (121)
T KOG3305|consen    1 DDNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHL-FKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLK   79 (121)
T ss_pred             CCcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHh-ccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHh
Confidence            36789999999998    689999999999999998864 456776664432   3789999999999999999999999


Q ss_pred             HCCCCeEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          150 NTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       150 ~~glp~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      ..+|.+.+|.     |+|++..||||+.|+|++.+.++.+||||+
T Consensus        80 ~~~i~hklwi-----eqpeniptcia~kpy~k~~v~~f~k~lkl~  119 (121)
T KOG3305|consen   80 EGEIKHKLWI-----EQPENIPTCIALKPYPKDQVHKFFKHLKLC  119 (121)
T ss_pred             cCCchhhhhh-----cCccCCCceeecCCCcHHHHHHHHHHHHhh
Confidence            9999999998     899999999999999999999999999985

>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function

Probab=98.13  E-value=5.9e-06  Score=66.22  Aligned_cols=109  Identities=25%  Similarity=0.325  Sum_probs=75.2

Q ss_pred             CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHH---------HHHH-hCCCCeEEEecCCHHHHHHHHHHH
Q 029386           79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLL---------RKWE-QCGQPKIVVTCKNQQEMNKLWEVA  148 (194)
Q Consensus        79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l---------~~W~-~~G~~KIVLk~~~e~eL~~L~~~A  148 (194)
                      +.|.|+||+.||.  .|.++-=+||-+++.-...    |+.+         ..|. ...++-+||+. |.++|.+|.++|
T Consensus         1 d~K~viVv~~~Lp--~g~~~NaaA~L~~~Lg~~~----p~l~G~~~~D~~g~~h~gi~~~PipIL~a-~~~~L~~l~~~a   73 (133)
T PF09391_consen    1 DTKCVIVVDEDLP--PGLAANAAAVLGLGLGAAH----PELVGEDYRDADGNAHPGISHIPIPILKA-NSEQLRELRQKA   73 (133)
T ss_dssp             SEEEEEEEETTS---HHHHHHHHHHHHHHHHHH-----GGGB-S-EE-TTS-EE---BSS-EEEEEE--HHHHHHHHHHH
T ss_pred             CcEEEEEECCCCh--HHHHHHHHHHHHHHHhccC----ccccCCcccCCCCCCCCCCCCcCeEEEEc-CHHHHHHHHHHH
Confidence            4799999999987  8899999999988866532    2221         1111 24689999999 679999999999


Q ss_pred             HHCCCCeEEEEcCCC------------CcccCCCeeEEEec-CCCccchhhhcCCCCCC
Q 029386          149 ENTGLPTFVVADAGR------------TQVSAGSKTVLAIG-PGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       149 ~~~glp~~~V~DAGr------------Tev~pgs~TvlAIG-P~p~~~Id~iTg~LKLl  194 (194)
                      .+.++.+....|..+            -+.++.....++|+ -+|+..|+++||+|+||
T Consensus        74 ~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~  132 (133)
T PF09391_consen   74 LEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLL  132 (133)
T ss_dssp             HHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE-
T ss_pred             HHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence            999998888887765            23445667777776 68899999999999986

The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.

>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.12  E-value=0.66  Score=36.84  Aligned_cols=67  Identities=22%  Similarity=0.315  Sum_probs=52.2

Q ss_pred             CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC--------C----CCcccCCCeeEEEec-CCCccchhhhcCCCC
Q 029386          126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA--------G----RTQVSAGSKTVLAIG-PGPKSLVDSVTGKQR  192 (194)
Q Consensus       126 ~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DA--------G----rTev~pgs~TvlAIG-P~p~~~Id~iTg~LK  192 (194)
                      +=|+.|||.. |++.|..+-..|-++++++.+-.+.        -    +.|..|.+.-|++|. -+.+..+|+||+.-|
T Consensus        54 siqpvivls~-dqetl~aihrraler~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgar  132 (135)
T COG4954          54 SIQPVIVLSG-DQETLKAIHRRALERKVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGAR  132 (135)
T ss_pred             ccceEEEEeC-CHHHHHHHHHHHHhcCCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHccccc
Confidence            3478888754 6899999999999999998876532        1    256778888888775 567888999999876


Q ss_pred             C
Q 029386          193 L  193 (194)
Q Consensus       193 L  193 (194)
                      +
T Consensus       133 m  133 (135)
T COG4954         133 M  133 (135)
T ss_pred             c
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
1q7s_A	117	Crystal Structure Of Bit1 Length = 117		2e-28
1xty_A	120	Crystal Structure Of Sulfolobus Solfataricus Peptid		2e-22
1rlk_A	117	Structure Of Conserved Protein Of Unknown Function		3e-18
1rzw_A	123	The Solution Structure Of The Archaeglobus Fulgidis		1e-17
2zv3_A	115	Crystal Structure Of Project Mj0051 From Methanocal		6e-17
1wn2_A	121	Crystal Structure Of Project Id Ph1539 From Pyrococ		1e-16

>pdb|1Q7S|A Chain A, Crystal Structure Of Bit1 Length = 117

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 80/115 (69%)
Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
           + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   ++
Sbjct: 2   EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61
Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
           + +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct: 62  ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>pdb|1XTY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna Hydrolase Length = 120

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTC 135
           +K+ +VVR D+KMG GKIA+Q AHAA  +   ++ S+    +  L +W   GQPKI+V  
Sbjct: 2   IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61
Query: 136 KNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
            +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++LVDS+TG  +LL
Sbjct: 62  NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120

>pdb|1RLK|A Chain A, Structure Of Conserved Protein Of Unknown Function Ta0108 From Thermoplasma Acidophilum Length = 117

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 81  KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQE 140
           K+ + VR+DL MG GKIA+Q AHAA       M+ +R +  +W   GQ KIVV   +  E
Sbjct: 4   KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDE 63
Query: 141 MNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           + ++  +A++ G+   +V D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct: 64  IMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117

>pdb|1RZW|A Chain A, The Solution Structure Of The Archaeglobus Fulgidis Protein Af2095. Northeast Structural Genomics Consortium Target Gr4 Length = 123

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
           LK  +VVR DLK+  GK+A Q AHAA   Y   ++SD  L RKW   GQ K+V+  K+ +
Sbjct: 3   LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY---LKSDSSLRRKWLDEGQKKVVLKVKSLE 59
Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+  +   AE+ GL T +V DAG T+V  G+ T + IGP  +  +D VTG   LL
Sbjct: 60  ELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114

>pdb|2ZV3|A Chain A, Crystal Structure Of Project Mj0051 From Methanocaldococcus Jannaschii Dsm 2661 Length = 115

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 68/115 (59%)
Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
           +K+ +V+R DL MG GK+ +Q  HA    + +  + +   + +W + GQ K+VV   +++
Sbjct: 1   MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60
Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+  ++  A + GLP  ++ DAG TQ+  G+ T +AIGP     +D +TG  +LL
Sbjct: 61  ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115

>pdb|1WN2|A Chain A, Crystal Structure Of Project Id Ph1539 From Pyrococcus Horikoshii Ot3 Length = 121

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 69/114 (60%)
Query: 81  KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQE 140
           K  +V R DLK+  GK+A+Q AH A     E  +  R     W + GQ K+VV  ++++E
Sbjct: 8   KQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEE 67
Query: 141 MNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           + KL   AE  GLP  ++ DAG T++  G+ TVLA+GP P+ +VD VTG  +LL
Sbjct: 68  LFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
2zv3_A	115	PTH, peptidyl-tRNA hydrolase; cytoplasm, structura	1e-49
1rlk_A	117	Hypothetical protein TA0108; structural genomics,	1e-49
1q7s_A	117	BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapi	3e-49
1wn2_A	121	Peptidyl-tRNA hydrolase; riken structural genomics	7e-49
1rzw_A	123	Protein AF2095(GR4); beta-sheet of 4 parallel, ant	1e-47
1xty_A	120	PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.	3e-46

>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Length = 115

 Score =  156 bits (395), Expect = 1e-49
 Identities = 39/115 (33%), Positives = 68/115 (59%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
           +K+ +V+R DL MG GK+ +Q  HA    + +  + +   + +W + GQ K+VV   +++
Sbjct: 1   MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60

Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+  ++  A + GLP  ++ DAG TQ+  G+ T +AIGP     +D +TG  +LL
Sbjct: 61  ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115

>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1 Length = 117

 Score =  155 bits (394), Expect = 1e-49
 Identities = 44/116 (37%), Positives = 68/116 (58%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
             K+ + VR+DL MG GKIA+Q AHAA       M+ +R +  +W   GQ KIVV   + 
Sbjct: 2   VKKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDL 61

Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
            E+ ++  +A++ G+   +V D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct: 62  DEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117

>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1 Length = 117

 Score =  154 bits (392), Expect = 3e-49
 Identities = 55/115 (47%), Positives = 80/115 (69%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
           + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   ++
Sbjct: 2   EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61

Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
           + +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct: 62  ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A Length = 121

 Score =  154 bits (390), Expect = 7e-49
 Identities = 48/117 (41%), Positives = 69/117 (58%)

Query: 78  QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKN 137
              K  +V R DLK+  GK+A+Q AH A     E  +  R     W + GQ K+VV  ++
Sbjct: 5   FKYKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVES 64

Query: 138 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           ++E+ KL   AE  GLP  ++ DAG T++  G+ TVLA+GP P+ +VD VTG  +LL
Sbjct: 65  EEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121

>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A Length = 123

 Score =  151 bits (382), Expect = 1e-47
 Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
            LK  +VVR DLK+  GK+A Q AHAA   Y   ++SD  L RKW   GQ K+V+  K+ 
Sbjct: 2   TLKQVIVVRDDLKLSRGKLAVQVAHAAIIGY---LKSDSSLRRKWLDEGQKKVVLKVKSL 58

Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           +E+  +   AE+ GL T +V DAG T+V  G+ T + IGP  +  +D VTG   LL
Sbjct: 59  EELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114

>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi} Length = 120

 Score =  147 bits (372), Expect = 3e-46
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 4/119 (3%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTC 135
           +K+ +VVR D+KMG GKIA+Q AHAA  +   ++ S+    +  L +W   GQPKI+V  
Sbjct: 2   IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61

Query: 136 KNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
            +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++LVDS+TG  +LL
Sbjct: 62  NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1rlk_A	117	Hypothetical protein TA0108; structural genomics,	100.0
1wn2_A	121	Peptidyl-tRNA hydrolase; riken structural genomics	100.0
1q7s_A	117	BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapi	100.0
2zv3_A	115	PTH, peptidyl-tRNA hydrolase; cytoplasm, structura	100.0
1rzw_A	123	Protein AF2095(GR4); beta-sheet of 4 parallel, ant	100.0
1xty_A	120	PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.	100.0
2gax_A	135	Hypothetical protein ATU0240; MCSG, structural gen	99.89

>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1

Probab=100.00  E-value=2e-47  Score=296.78  Aligned_cols=117  Identities=38%  Similarity=0.596  Sum_probs=114.3

Q ss_pred             CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386           78 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV  157 (194)
Q Consensus        78 ~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~  157 (194)
                      +++|||||||+||+||+||+||||||||+++|.++++++++.+++|+.+||+||||+++|+++|.+|.++|++.|||+++
T Consensus         1 ~e~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~   80 (117)
T 1rlk_A            1 MVKKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEI   80 (117)
T ss_dssp             -CEEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          158 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       158 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |+|||||||+|||.|||||||+|++.||+||||||||
T Consensus        81 v~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~  117 (117)
T 1rlk_A           81 VQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL  117 (117)
T ss_dssp             EECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             EEeCCccCcCCCCEEEEEeCcCCHHHHHHHcCCCCCC
Confidence            9999999999999999999999999999999999997

>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A

Probab=100.00  E-value=4.2e-47  Score=296.84  Aligned_cols=117  Identities=41%  Similarity=0.644  Sum_probs=114.6

Q ss_pred             CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386           78 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV  157 (194)
Q Consensus        78 ~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~  157 (194)
                      .++|||||||+||+||+||+||||||||+++|+++.+++++.+++|+.+||+||||+++|+++|.+|.++|++.|||+++
T Consensus         5 ~~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~   84 (121)
T 1wn2_A            5 FKYKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNAL   84 (121)
T ss_dssp             CCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccceEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            57899999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          158 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       158 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |+|||||||+|||.|||||||+|++.||+||||||||
T Consensus        85 i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~LkL~  121 (121)
T 1wn2_A           85 IRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL  121 (121)
T ss_dssp             EECTTCTTSCTTCEEEEEEEEEEHHHHHHHHTTSEEC
T ss_pred             EEcCCccccCCCCEEEEEeccCCHHHHHHhcCCCCCC
Confidence            9999999999999999999999999999999999997

>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1

Probab=100.00  E-value=3.2e-47  Score=295.68  Aligned_cols=117  Identities=47%  Similarity=0.858  Sum_probs=114.6

Q ss_pred             CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386           78 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV  157 (194)
Q Consensus        78 ~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~  157 (194)
                      +++|||||||+||+||+||+||||||||+++|+++.+++++.+++|+..||+||||+++|+++|++|.++|++.|||+++
T Consensus         1 ~~~K~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~~~   80 (117)
T 1q7s_A            1 GEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSL   80 (117)
T ss_dssp             CCEEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCCeeEEEEcCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          158 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       158 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |+|||||||+|||.|||||||+|++.||+||||||||
T Consensus        81 i~DAG~Tqi~~gt~TvlaigP~~~~~vd~itg~lkL~  117 (117)
T 1q7s_A           81 IQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY  117 (117)
T ss_dssp             EEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             EEECCCcccCCCCeEEEEeccCCHHHHHHhcCCCCCC
Confidence            9999999999999999999999999999999999997

>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=4.7e-47  Score=293.97  Aligned_cols=115  Identities=34%  Similarity=0.642  Sum_probs=106.0

Q ss_pred             eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386           80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA  159 (194)
Q Consensus        80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~  159 (194)
                      +|||||||+||+||+||+||||||||+++|.++.+++++.+++|+.+||+||||+++|+++|++|.++|++.|||+++|+
T Consensus         1 ~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~   80 (115)
T 2zv3_A            1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIR   80 (115)
T ss_dssp             CEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            69999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      ||||||++|||.|||||||+|++.||+||||||||
T Consensus        81 DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~  115 (115)
T 2zv3_A           81 DAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL  115 (115)
T ss_dssp             ECC-------EEEEEEEEEECHHHHHHHHTTSCBC
T ss_pred             eCCceecCCCCEEEEEeCcCCHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999997

>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A

Probab=100.00  E-value=3.4e-47  Score=298.78  Aligned_cols=114  Identities=44%  Similarity=0.586  Sum_probs=110.6

Q ss_pred             CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386           78 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV  157 (194)
Q Consensus        78 ~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~  157 (194)
                      .++|||||||+||+||+||+||||||||+++|+++   +++++++|+++||+||||+++|+++|++|.++|++.|||+++
T Consensus         1 ~~~k~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~---~~~~l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~   77 (123)
T 1rzw_A            1 MTLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLKS---DSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGL   77 (123)
T ss_dssp             CCCEEEEEEECCCSSCTTHHHHHHHHHHHHHHHHH---HTTHHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEEEECCCCCCcchHHHHHHHHHHHHHHHc---CHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999887   467899999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          158 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       158 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |+|||||||+|||.|||||||+|++.||+||||||||
T Consensus        78 I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL~  114 (123)
T 1rzw_A           78 VQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL  114 (123)
T ss_dssp             ECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCCC
T ss_pred             EECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCeec
Confidence            9999999999999999999999999999999999997

>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}

Probab=100.00  E-value=1.4e-46  Score=293.17  Aligned_cols=116  Identities=44%  Similarity=0.730  Sum_probs=112.5

Q ss_pred             CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhC----HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029386           79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLP  154 (194)
Q Consensus        79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~----~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp  154 (194)
                      ++|||||||+||+|++||+||||||||+++|+++.+++    ++.+++|+.+||+||||+++|+++|++|.++|++.|||
T Consensus         1 ~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~   80 (120)
T 1xty_A            1 MIKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLP   80 (120)
T ss_dssp             CEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCC
Confidence            48999999999999999999999999999999987666    88999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          155 TFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       155 ~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      +++|+|||||||+|||.|||||||+|++.||+||||||||
T Consensus        81 ~~~i~DAG~Tei~~gs~TvlaigP~~~~~vd~itg~LkL~  120 (120)
T 1xty_A           81 FSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL  120 (120)
T ss_dssp             EEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHTTCEEC
T ss_pred             EEEEEcCCccccCCCCeEEEEeccCCHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999997

>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1

Probab=99.89  E-value=9.8e-25  Score=173.08  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=105.0

Q ss_pred             CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHh------hhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCC
Q 029386           79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELM------QSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTG  152 (194)
Q Consensus        79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~------~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~g  152 (194)
                      +.|+|||||.||+|+  ++++||||++++++.+..      ..+.+....|...+++++||++++ ++|.+|.++|.+.+
T Consensus         3 ~~K~viVv~~dL~~g--~~aN~aA~l~~gl~~~~~~~~G~~~~d~~g~~~~~~~~~p~~VL~a~~-~~L~~l~~~a~~~~   79 (135)
T 2gax_A            3 DTKIAVILRDDLAVW--QKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQ-EALRKIHQRSLERD   79 (135)
T ss_dssp             SEEEEEEEETTSCHH--HHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEECCCBSSCEEEEEECH-HHHHHHHHHHHHTT
T ss_pred             CcEEEEEEcCCChHH--HHHHHHHHHHHHHHHhChhhcCCcccCcccccccccCCCcEEEEEECH-HHHHHHHHHHHHCC
Confidence            679999999999987  999999999999998764      245666778999999999999998 99999999999999


Q ss_pred             CCeEEEEcCCC------------CcccCCCeeEEEec-CCCccchhhhcCCCCCC
Q 029386          153 LPTFVVADAGR------------TQVSAGSKTVLAIG-PGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       153 lp~~~V~DAGr------------Tev~pgs~TvlAIG-P~p~~~Id~iTg~LKLl  194 (194)
                      |+++.+.|+++            ||+++++.|++||| |+|++.||++||+|+|+
T Consensus        80 l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~~~GI~l~Gp~k~VdklTg~L~L~  134 (135)
T 2gax_A           80 ITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLH  134 (135)
T ss_dssp             CCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEEC
T ss_pred             CcEEeccHHhhhCCCHHHHHHHHhcCCcccceEEEEEEECCHHHHHHHhCCCCCC
Confidence            99999999999            99999999999999 99999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1q7sa_	117	c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens	5e-50
d1rlka_	116	c.131.1.1 (A:) Hypothetical protein TA0108 {Archae	5e-49
d3erja1	116	c.131.1.1 (A:2-117) Hypothetical protein AF2095 {A	6e-47
d2gaxa1	135	c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {	0.001

>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Bit1 (Cgi-147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (394), Expect = 5e-50
 Identities = 55/115 (47%), Positives = 80/115 (69%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 138
           + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   ++
Sbjct: 2   EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61

Query: 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 193
           + +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct: 62  ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116

>d1rlka_ c.131.1.1 (A:) Hypothetical protein TA0108 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein TA0108
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  153 bits (388), Expect = 5e-49
 Identities = 44/115 (38%), Positives = 68/115 (59%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
            K+ + VR+DL MG GKIA+Q AHAA       M+ +R +  +W   GQ KIVV   +  
Sbjct: 2   KKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLD 61

Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+ ++  +A++ G+   +V D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct: 62  EIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 116

>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein AF2095
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  147 bits (374), Expect = 6e-47
 Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 80  LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 139
           LK  +VVR DLK+  GK+A Q AHAA   Y   ++SD  L RKW   GQ K+V+  K+ +
Sbjct: 2   LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY---LKSDSSLRRKWLDEGQKKVVLKVKSLE 58

Query: 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194
           E+  +   AE+ GL T +V DAG T+V  G+ T + IGP  +  +D VTG   LL
Sbjct: 59  ELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 113

>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein Atu0240
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 30/138 (21%)

Query: 79  DLKLALVVRQDLKMGSGKIASQCAHAATGM---YAELMQSD-------RHLLRKWEQCGQ 128
           D K+A+++R DL +   +  +  A   +G+     E++           +         Q
Sbjct: 3   DTKIAVILRDDLAV--WQKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYN----PLSIQ 56

Query: 129 PKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRT------------QVSAGSKTVLAI 176
           P IVV   +Q+ + K+ + +    + T +  +                  S  +  V+ +
Sbjct: 57  P-IVVMATDQEALRKIHQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGM 115

Query: 177 G-PGPKSLVDSVTGKQRL 193
                + +VD +T   +L
Sbjct: 116 ALRADRKIVDKITKGAKL 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1rlka_	116	Hypothetical protein TA0108 {Archaeon Thermoplasma	100.0
d1q7sa_	117	Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]	100.0
d3erja1	116	Hypothetical protein AF2095 {Archaeoglobus fulgidu	100.0
d2gaxa1	135	Hypothetical protein Atu0240 {Agrobacterium tumefa	97.96

>d1rlka_ c.131.1.1 (A:) Hypothetical protein TA0108 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein TA0108
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.9e-48  Score=298.87  Aligned_cols=115  Identities=38%  Similarity=0.618  Sum_probs=113.4

Q ss_pred             eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386           80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA  159 (194)
Q Consensus        80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~  159 (194)
                      .|||||||+||+||+||+||||||||+.+|..+++++++.+.+|...||+||||+|+|+++|++|.++|++.||++++|+
T Consensus         2 ~KmvivVR~DL~Ms~GKiaAQ~~HAav~~~~~~~~~~~~~~~~W~~~g~~KIvl~v~~e~~L~~l~~~a~~~~l~~~~v~   81 (116)
T d1rlka_           2 KKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQ   81 (116)
T ss_dssp             EEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eeEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |||||||||||.||+||||+|++.||+||||||||
T Consensus        82 DAG~Tei~pgt~TvlaigP~~~~~id~itg~LkLL  116 (116)
T d1rlka_          82 DRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL  116 (116)
T ss_dssp             CCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             CCCCcccCCCCeEEEEECCCCHHHHHHHhCcCcCC
Confidence            99999999999999999999999999999999997

>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Bit1 (Cgi-147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-48  Score=300.78  Aligned_cols=117  Identities=47%  Similarity=0.858  Sum_probs=114.9

Q ss_pred             CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386           78 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV  157 (194)
Q Consensus        78 ~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~  157 (194)
                      +++|||||||+||+||+||+||||||||+.+|..++++++..+.+|..+||+||||+++|+++|++|.++|++.||++++
T Consensus         1 ge~K~vivVR~DL~ms~GKiaAQ~~HAav~~~~~~~~~~~~~~~~W~~~g~~KIvl~v~~e~~l~~l~~~a~~~~l~~~~   80 (117)
T d1q7sa_           1 GEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSL   80 (117)
T ss_dssp             CCEEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEEEECCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          158 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       158 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      |+||||||+||||.|||||||+|++.||+||||||||
T Consensus        81 i~DAG~Tei~~gt~TvlaigP~~~~~id~itg~LkLy  117 (117)
T d1q7sa_          81 IQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY  117 (117)
T ss_dssp             EEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred             EEcCCCcccCCCCeEEEEECCCCHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999997

>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein AF2095
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.6e-46  Score=289.22  Aligned_cols=113  Identities=45%  Similarity=0.607  Sum_probs=109.0

Q ss_pred             CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029386           79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV  158 (194)
Q Consensus        79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V  158 (194)
                      .+|||||||+||+||+||+||||||||+.+|.+   .+++.+.+|..+||+||||+++|+++|++|.++|++.||++++|
T Consensus         1 ~~K~vivvR~DL~Ms~GKiaAQ~~HAav~~~~~---~~~~~~~~W~~~g~~KIvl~v~~e~~L~~l~~~a~~~~l~~~~i   77 (116)
T d3erja1           1 TLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLK---SDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLV   77 (116)
T ss_dssp             CEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeeEEEEEECCCCCCcchHHHHHHHHHHHHHHH---hCcHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999999865   47889999999999999999999999999999999999999999


Q ss_pred             EcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386          159 ADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       159 ~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl  194 (194)
                      +|||||||||||.||+||||+|++.||+||||||||
T Consensus        78 ~DAG~Tei~~gt~TvlaigP~~~~~id~itg~LkLl  113 (116)
T d3erja1          78 QDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL  113 (116)
T ss_dssp             CCTTCSSSCTTCCCEEEEEEEEHHHHHHHHTTCCBC
T ss_pred             EcCCCcccCCCCeEEEEECCCCHHHHHHHhCcCccc
Confidence            999999999999999999999999999999999997

>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Peptidyl-tRNA hydrolase II
superfamily: Peptidyl-tRNA hydrolase II
family: Peptidyl-tRNA hydrolase II
domain: Hypothetical protein Atu0240
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.96  E-value=3.6e-06  Score=64.60  Aligned_cols=109  Identities=19%  Similarity=0.319  Sum_probs=83.3

Q ss_pred             CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHH-HHHH---------hCCCCeEEEecCCHHHHHHHHHHH
Q 029386           79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLL-RKWE---------QCGQPKIVVTCKNQQEMNKLWEVA  148 (194)
Q Consensus        79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l-~~W~---------~~G~~KIVLk~~~e~eL~~L~~~A  148 (194)
                      +-|.|+|||.||.  .|.++-=+||-+++.-..    .|+.+ ..|.         ...++-+||+.+ .+.|.++.++|
T Consensus         3 dtK~viVi~~~L~--~g~~lN~~A~L~~glg~~----~peliG~~y~D~~G~~h~~i~~~Pv~VL~a~-~~~L~~l~~~a   75 (135)
T d2gaxa1           3 DTKIAVILRDDLA--VWQKLNVTAFLMSGIVAQ----TGEIIGEPYRDGAGNVYNPLSIQPIVVMATD-QEALRKIHQRS   75 (135)
T ss_dssp             SEEEEEEEETTSC--HHHHHHHHHHHHHHHHHH----CGGGBCSCEECTTSCEECCCBSSCEEEEEEC-HHHHHHHHHHH
T ss_pred             ccEEEEEECCCCH--HHHHHHHHHHHHHHHhhc----CccccCCcccCCCCCcccccCCCCEEEEECC-HHHHHHHHHHH
Confidence            5699999999998  788888899998886644    23332 2221         246999999995 78999999999


Q ss_pred             HHCCCCeEEEEcCCCC------------cccCCCeeEEEec-CCCccchhhhcCCCCCC
Q 029386          149 ENTGLPTFVVADAGRT------------QVSAGSKTVLAIG-PGPKSLVDSVTGKQRLL  194 (194)
Q Consensus       149 ~~~glp~~~V~DAGrT------------ev~pgs~TvlAIG-P~p~~~Id~iTg~LKLl  194 (194)
                      .+++|++....+.=++            +.++...-.++|+ -+|+..||++||+|+|+
T Consensus        76 l~~~i~~~~f~~~m~~t~~~~~~~~~~~~~~~~dl~~vGial~G~kk~Vdklt~~l~Lh  134 (135)
T d2gaxa1          76 LERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLH  134 (135)
T ss_dssp             HHTTCCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEEC
T ss_pred             hcCCCceeechHHHHhcCCHHHHHHHHhccChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence            9999999988775431            3445555655554 67899999999999985