Citrus Sinensis ID: 029444

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHccccHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHcccEEEEc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccEEEEEEEEEcHHHHHHHHHHHHHHHcccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
MKLTALAKSicsrpflpritgplqfrllqhdfvprdpkskpikykypafydpygprpppsdkVVQLAERIASLTPEERRQISLTLfkrfslpklqpistegldlgpqggapagsakveekkektTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Flexible Loop (DISEMBL)
MKLTALAKsicsrpflprITGPLQFRLLQHDfvprdpkskpikYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTlfkrfslpklqpistegldlgpqggapagsakveekkeKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKApvvlkqgltkeeasnIIEKikaaggvaime
Low Complexity Region (SEG)
MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVklekfeaaaklkIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Disordered region (IsUnstruct)
******AKSICSRPFLPRITGPLQFRLLQHDFVPR*****PIKYKYPAFYDP****************************ISLTLFKRFSL**********************************FDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLT*****NIIEKIK*********
Disordered Region (DISOPRED)
**************************************************************VVQLAERIASLTPEERRQISLTLFKRFSLPKLQPIS*************************TTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Disordered Region (DISEMBL)
MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQ*****************TFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Disordered Region (DISPRO)
*KLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPIST*********************KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9L5W4	124	50S ribosomal protein L7/	N/A	no	0.347	0.540	0.492	2e-10
Q46HH2	131	50S ribosomal protein L7/	yes	no	0.352	0.519	0.514	3e-10
A9BDG4	132	50S ribosomal protein L7/	yes	no	0.341	0.5	0.515	4e-10
P36247	122	50S ribosomal protein L7/	yes	no	0.595	0.942	0.368	4e-10
A2C031	131	50S ribosomal protein L7/	yes	no	0.352	0.519	0.5	6e-10
P41189	125	50S ribosomal protein L7/	N/A	no	0.362	0.56	0.471	8e-10
Q1XDE8	129	50S ribosomal protein L12	N/A	no	0.658	0.984	0.360	1e-09
Q7VDY8	130	50S ribosomal protein L7/	yes	no	0.341	0.507	0.484	2e-09
Q31CY0	131	50S ribosomal protein L7/	yes	no	0.352	0.519	0.485	2e-09
A2BNZ6	131	50S ribosomal protein L7/	yes	no	0.352	0.519	0.485	3e-09

>sp|Q9L5W4|RL7_LIBAC 50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 51/67 (76%)

Query: 122 EKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIE 181
           EKT F+V LE F+A +K+ ++KEV++  DLG+KEAKELVE     L+ G++K+EA+ + +
Sbjct: 53  EKTEFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKK 112

Query: 182 KIKAAGG 188
           K++AAG 
Sbjct: 113 KLEAAGA 119

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.
Liberibacter africanus subsp. capensis (taxid: 119494)

>sp|Q46HH2|RL7_PROMT 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) GN=rplL PE=3 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT F+V LE FEA++K+K++KEV+    LG+ EAK LVE AP  +K+G TKE+A  + 
Sbjct: 59  EEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALK 118

Query: 181 EKIKAAGG 188
           + I+A GG
Sbjct: 119 KAIEAVGG 126

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain NATL2A) (taxid: 59920)

>sp|A9BDG4|RL7_PROM4 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query: 123 KTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEK 182
           KT FDV LE F+AAAK+K++KEV+    LG+ EAK +VE AP  +K+G +KE+A  + + 
Sbjct: 62  KTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKKA 121

Query: 183 IKAAGG 188
           I+A GG
Sbjct: 122 IEAVGG 127

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain MIT 9211) (taxid: 93059)

>sp|P36247|RL7_LIBAS 50S ribosomal protein L7/L12 OS=Liberibacter asiaticus GN=rplL PE=3 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 10/125 (8%)

Query: 65  QLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKT 124
            + E+++SLT  E  ++S  L K + +    P+S           AP  +       EKT
Sbjct: 6   SIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV---------VAPVAAEAGSAASEKT 56

Query: 125 TFDVKLEKFEA-AAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKI 183
            F+V L+ F+    K+ ++KEV+   DLG+KEAKELVE AP  LK GL+K+EA+ + +K+
Sbjct: 57  EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKL 116

Query: 184 KAAGG 188
           + AG 
Sbjct: 117 EDAGA 121

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Liberibacter asiaticus (taxid: 34021)

>sp|A2C031|RL7_PROM1 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) GN=rplL PE=3 SV=1

 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 50/68 (73%)

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT F+V LE F+A++K+K++KEV+    LG+ EAK LVE AP  +K+G TKE+A  + 
Sbjct: 59  EEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALK 118

Query: 181 EKIKAAGG 188
           + I+A GG
Sbjct: 119 KAIEAVGG 126

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain NATL1A) (taxid: 167555)

>sp|P41189|RL7_LIBAF 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 50/70 (71%)

Query: 123 KTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEK 182
           KT F+V LE F+A  K+ ++KEV+   +LG+KEAK+ VE AP  LK G++K+EA  + +K
Sbjct: 55  KTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKK 114

Query: 183 IKAAGGVAIM 192
           ++AAG   I+
Sbjct: 115 LEAAGATIIL 124

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Liberibacter africanus (taxid: 34020)

>sp|Q1XDE8|RK12_PORYE 50S ribosomal protein L12, chloroplastic OS=Porphyra yezoensis GN=rpl12 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 6/133 (4%)

Query: 60  SDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEE 119
           S KV  + E + SL   E  ++  T+ + F +      ++ G+ +     APA SA+VEE
Sbjct: 2   STKVENILEELKSLNLLEAAELVNTIEETFDVD--ASAASGGMMMATPTSAPA-SAEVEE 58

Query: 120 KKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNI 179
           K E   FDV LE+  A  K+ ++K V+    LG+KEAK+LVE  P VLK+G +K++A  +
Sbjct: 59  KTE---FDVVLEEVPAPKKISVLKVVRPLTGLGLKEAKDLVESTPKVLKEGASKDDAETM 115

Query: 180 IEKIKAAGGVAIM 192
            ++++ AG   I+
Sbjct: 116 KKQLEDAGATVIV 128

Porphyra yezoensis (taxid: 2788)

>sp|Q7VDY8|RL7_PROMA 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rplL PE=3 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 123 KTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEK 182
           KT FDV LE F+A+AK+K++KEV+    LG+ +AK +VE AP  +K+G +KE+A  + + 
Sbjct: 60  KTEFDVVLESFDASAKIKVLKEVRNATGLGLGDAKAMVEAAPKTIKEGASKEDAEALKKA 119

Query: 183 IKAAGG 188
           I+A GG
Sbjct: 120 IEAVGG 125

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|Q31CY0|RL7_PROM9 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplL PE=3 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 50/68 (73%)

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV LE F+AAAK+K++K V+    LG+ +AK LVE AP  +K+G+ K +A ++ 
Sbjct: 59  EEKTEFDVVLESFDAAAKIKVLKVVRNATGLGLGDAKALVESAPKTVKEGIAKADAESLK 118

Query: 181 EKIKAAGG 188
           ++I+ AGG
Sbjct: 119 KEIEEAGG 126

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

>sp|A2BNZ6|RL7_PROMS 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain AS9601) GN=rplL PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 50/68 (73%)

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV LE F+AAAK+K++K V+    LG+ +AK LVE AP  +K+G+ K +A ++ 
Sbjct: 59  EEKTEFDVVLESFDAAAKIKVLKVVRNATGLGLGDAKALVESAPKTVKEGIAKADAESLK 118

Query: 181 EKIKAAGG 188
           ++I+ AGG
Sbjct: 119 KEIEEAGG 126

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
255540659	193	50S ribosomal protein L7/L12, putative [	1.0	1.0	0.730	5e-74
225457021	193	PREDICTED: 50S ribosomal protein L12, ch	1.0	1.0	0.709	8e-68
449527376	193	PREDICTED: LOW QUALITY PROTEIN: 50S ribo	1.0	1.0	0.658	3e-67
449468608	193	PREDICTED: 50S ribosomal protein L12, ch	1.0	1.0	0.658	5e-67
224133546	195	predicted protein [Populus trichocarpa]	1.0	0.989	0.697	2e-60
76160931	194	unknown [Solanum tuberosum]	1.0	0.994	0.680	7e-60
356533169	191	PREDICTED: 50S ribosomal protein L12-2,	0.984	0.994	0.644	1e-58
388493984	190	unknown [Medicago truncatula]	0.979	0.994	0.623	6e-56
351725927	181	uncharacterized protein LOC100306392 [Gl	0.860	0.917	0.688	2e-55
194690842	191	unknown [Zea mays] gi|413926230|gb|AFW66	0.968	0.979	0.563	7e-49

>gi|255540659|ref|XP_002511394.1| 50S ribosomal protein L7/L12, putative [Ricinus communis] gi|223550509|gb|EEF51996.1| 50S ribosomal protein L7/L12, putative [Ricinus communis]

 Score =  282 bits (721), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 141/193 (73%), Positives = 161/193 (83%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           MK   L +S+ +R  L  ITGPLQ R  QHDFVPRDPK  P KYKYPAFYDPYGPRPPPS
Sbjct: 1   MKFVPLLRSVSTRYTLREITGPLQVRFFQHDFVPRDPKINPRKYKYPAFYDPYGPRPPPS 60

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           DK+VQLAERIA+L PEERRQI  TL  + + PKLQ ISTEG+DLG QG   A +AKVEEK
Sbjct: 61  DKIVQLAERIAALPPEERRQIGPTLHYKLNHPKLQTISTEGMDLGAQGSQAAVAAKVEEK 120

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           KEKT FDVKLEKF+AAAK+K++KEV+ F +LG+KEAK+LVEKAP VLKQG+TKEEA++II
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKAPAVLKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAIME 193
           EKIKAAGGVAIME
Sbjct: 181 EKIKAAGGVAIME 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457021|ref|XP_002282612.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera]

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 160/193 (82%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           MK TAL K++   P LP+I GPLQ R  QHDFVPR+P +KP +YKYP FYDPYGP+PPPS
Sbjct: 1   MKFTALVKTVRVHPTLPKIIGPLQSRFFQHDFVPREPNAKPKRYKYPPFYDPYGPKPPPS 60

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           +KVV LAERIA+L PEER QI   L  R SLPK Q ISTEG++LG QGGA AG+ KVEEK
Sbjct: 61  EKVVGLAERIAALAPEERLQIGPMLKDRLSLPKTQVISTEGMELGSQGGAAAGAGKVEEK 120

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
            EKT FDVKLEKFEAAAK+K++KEV+ F  LG+KEAK+LVEK PVV+KQG+TKEEA++II
Sbjct: 121 VEKTAFDVKLEKFEAAAKIKVIKEVRAFTSLGLKEAKDLVEKVPVVIKQGITKEEANDII 180

Query: 181 EKIKAAGGVAIME 193
           EKIKAAGGVA+ME
Sbjct: 181 EKIKAAGGVAVME 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527376|ref|XP_004170687.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L12, chloroplastic-like [Cucumis sativus]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 155/193 (80%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           MKLT +A+S+  R    +I G  Q R  Q DF PRDP +KP KYKYPAFYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           DK+++LAERI +L   ER QI  TL ++   PKLQ IS +GLD+GP+GGA AGS+ VEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLXRKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           KEKT FDVKLEKF+AA+K+K++KEV+ F +LG+KEAK+LVEK P +LKQG+TKEEA+ II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAIME 193
           EKIKAAGGVA+ME
Sbjct: 181 EKIKAAGGVAVME 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468608|ref|XP_004152013.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis sativus]

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 155/193 (80%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           MKLT +A+S+  R    +I G  Q R  Q DF PRDP +KP KYKYPAFYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           DK+++LAERI +L   ER QI  TL ++   PKLQ IS +GLD+GP+GGA AGS+ VEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           KEKT FDVKLEKF+AA+K+K++KEV+ F +LG+KEAK+LVEK P +LKQG+TKEEA+ II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAIME 193
           EKIKAAGGVA+ME
Sbjct: 181 EKIKAAGGVAVME 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133546|ref|XP_002321601.1| predicted protein [Populus trichocarpa] gi|222868597|gb|EEF05728.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 162/195 (83%), Gaps = 2/195 (1%)

Query: 1   MKLTALAKSICSR-PFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPP 59
           MK  ALA+S+C+  P L  ITGPLQ R  QHDFVPRDPK+KP KYKYP +YDPYGPRPPP
Sbjct: 1   MKFIALARSVCAHHPALREITGPLQVRYFQHDFVPRDPKTKPKKYKYPLYYDPYGPRPPP 60

Query: 60  SDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQ-GGAPAGSAKVE 118
           S+K++++AERIA+L PEER QI   L  +   PKLQPISTEG+ LG Q G A AG+AKVE
Sbjct: 61  SEKIIEIAERIAALPPEERSQIGSALGYKLKHPKLQPISTEGMGLGSQGGEAAAGAAKVE 120

Query: 119 EKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASN 178
           EKKEKT FDVKLEKF+AAAK+K++KEV+ F +LG+KEAK+LVEK P VLKQG+TK+EA+ 
Sbjct: 121 EKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPCVLKQGVTKDEANG 180

Query: 179 IIEKIKAAGGVAIME 193
           IIEKIKAAGGVA+ME
Sbjct: 181 IIEKIKAAGGVAVME 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76160931|gb|ABA40429.1| unknown [Solanum tuberosum]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 152/194 (78%), Gaps = 1/194 (0%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           MKL A  + I +   L  I GPLQ R  Q DFVPRDP +KPI+YKYPA YDPYGPRPPPS
Sbjct: 1   MKLIARLRPIQTCTALREIIGPLQSRSFQPDFVPRDPNAKPIRYKYPAAYDPYGPRPPPS 60

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           DK+VQLAERIA+L PEERRQI   L +    P L+ IS EG+DLG  GGA  G AK EEK
Sbjct: 61  DKIVQLAERIAALAPEERRQIGPLLREILRHPNLKQISVEGMDLGAIGGAGGGPAKAEEK 120

Query: 121 K-EKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNI 179
           K EKT FDVKLEKF+AAAK+K++KEV++F  LG+KEAKELVEKAP +LKQG+TKEEA+ I
Sbjct: 121 KVEKTAFDVKLEKFDAAAKIKVIKEVRSFTSLGLKEAKELVEKAPAILKQGVTKEEANEI 180

Query: 180 IEKIKAAGGVAIME 193
           IEKIKA GGVA+ME
Sbjct: 181 IEKIKAVGGVAVME 194

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533169|ref|XP_003535140.1| PREDICTED: 50S ribosomal protein L12-2, chloroplastic-like [Glycine max]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 151/194 (77%), Gaps = 4/194 (2%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           M+   L++ IC  P  P   GPLQ R LQ D VP+DP++KPIKY+ P FYDPYGPRPPPS
Sbjct: 1   MRFMPLSRLICRLP-RPHTRGPLQSRALQSDSVPKDPQAKPIKYRIPQFYDPYGPRPPPS 59

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           +K+VQLAERI +L+ EER QI  TL +R  LPKLQPIST+G+ +           KVEEK
Sbjct: 60  EKIVQLAERIGALSEEERGQIMPTLSERLKLPKLQPISTDGMGM--GTEGGTAGPKVEEK 117

Query: 121 K-EKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNI 179
           K EKT FDVKLEKF+AAAK+K++KEV+ F +LG+KEAK+LVEK PVVLKQG+TKEEA+ I
Sbjct: 118 KAEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPVVLKQGITKEEANEI 177

Query: 180 IEKIKAAGGVAIME 193
           IEKIKAAGGVA+ME
Sbjct: 178 IEKIKAAGGVAVME 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493984|gb|AFK35058.1| unknown [Medicago truncatula]

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 147/194 (75%), Gaps = 5/194 (2%)

Query: 1   MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
           M++  L++ I   P  P    PLQ R  Q D + +D K+KPIKYK P  YDPYGPRPPPS
Sbjct: 1   MRIATLSRYIRRLP-RPGTFVPLQSRAFQTD-ISKDSKAKPIKYKIPQSYDPYGPRPPPS 58

Query: 61  DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
           DK+VQLAERIA+L+ EER  I   L +R  LPKLQPISTEG+DLG   GA     KVEEK
Sbjct: 59  DKIVQLAERIAALSEEERGHIIPALSERLKLPKLQPISTEGMDLGSDSGA--AGPKVEEK 116

Query: 121 K-EKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNI 179
           K EKT FDVKLEKF+ A+K+K++KEV+ F +LG+KEAK+LVEK P VLKQG+TK+EA++I
Sbjct: 117 KAEKTAFDVKLEKFDTASKIKVIKEVRAFTNLGLKEAKDLVEKVPTVLKQGVTKDEANSI 176

Query: 180 IEKIKAAGGVAIME 193
           IEKIKA GGVA+ME
Sbjct: 177 IEKIKAVGGVAVME 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725927|ref|NP_001238133.1| uncharacterized protein LOC100306392 [Glycine max] gi|255628393|gb|ACU14541.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 140/170 (82%), Gaps = 4/170 (2%)

Query: 16  LPR--ITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASL 73
           LPR    GPLQ R LQ D V +DP++KPIKYK P FYDPYGPRPPPS+K+VQLAE+I +L
Sbjct: 13  LPRHYTHGPLQSRALQTDSVLKDPQAKPIKYKIPQFYDPYGPRPPPSEKIVQLAEQIEAL 72

Query: 74  TPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKK-EKTTFDVKLEK 132
           + EER QI  TL +R  LPKLQPIST+G+D+G +GG  AG  KVEEKK EKT FDVKLEK
Sbjct: 73  SEEERGQIMPTLSERLKLPKLQPISTDGMDMGTEGGGAAG-LKVEEKKAEKTAFDVKLEK 131

Query: 133 FEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEK 182
           F+AAAK+K++KEV+ F +LG+KEAK+LVEK PVVLKQG+TKEEA+ IIEK
Sbjct: 132 FDAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPVVLKQGVTKEEANEIIEK 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194690842|gb|ACF79505.1| unknown [Zea mays] gi|413926230|gb|AFW66162.1| 60S ribosomal protein L7/L12 isoform 1 [Zea mays] gi|413926231|gb|AFW66163.1| 60S ribosomal protein L7/L12 isoform 2 [Zea mays]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/197 (56%), Positives = 139/197 (70%), Gaps = 10/197 (5%)

Query: 1   MKLTALAKSIC-SRPFLPRITGPLQFRLLQHDF---VPRDPKSKPIKYKYPAFYDPYGPR 56
           M L  +A+ +C S+P     +G     +  H +     +D  +K  KYKYP  YDPYGP 
Sbjct: 1   MSLCTIARRLCLSKPS----SGSRLSAIWAHLYSTEAAKDMGAK--KYKYPDVYDPYGPM 54

Query: 57  PPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAK 116
           PPPS+KVV+LA+RIA+L PEE +QI+  L  R +    Q +S +G   G Q G+ AGS K
Sbjct: 55  PPPSEKVVELADRIAALPPEEIKQIAPALLLRLNQEPPQAVSGQGFGFGAQVGSGAGSGK 114

Query: 117 VEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEA 176
            E+K EKT FDV+LEKF+AAAK+KI+KE++TF DLG+KEAKELVEKAPVVLKQ LTKEEA
Sbjct: 115 AEKKAEKTVFDVRLEKFDAAAKIKIIKEIRTFTDLGLKEAKELVEKAPVVLKQSLTKEEA 174

Query: 177 SNIIEKIKAAGGVAIME 193
             II KIKAAGGVA+ME
Sbjct: 175 EAIIAKIKAAGGVAVME 191

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2080369	186	AT3G06040 [Arabidopsis thalian	0.963	1.0	0.538	2.6e-47
TAIR|locus:2020678	208	AT1G70190 [Arabidopsis thalian	0.813	0.754	0.381	6.8e-24
TAIR|locus:2115385	179	AT4G36420 [Arabidopsis thalian	0.725	0.782	0.383	1.4e-18
TAIR|locus:2120116	167	AT4G37660 [Arabidopsis thalian	0.652	0.754	0.390	1.2e-17
ASPGD|ASPL0000042202	184	AN2057 [Emericella nidulans (t	0.704	0.739	0.342	4.1e-17
TAIR|locus:2056921	110	AT2G03130 [Arabidopsis thalian	0.440	0.772	0.411	5.6e-13
FB|FBgn0011787	182	mRpL12 "mitochondrial ribosoma	0.917	0.972	0.277	1.9e-12
CGD|CAL0006345	174	orf19.2275 [Candida albicans (	0.715	0.793	0.304	8.2e-12
UNIPROTKB|E1C3B6	194	MRPL12 "Uncharacterized protei	0.694	0.690	0.330	1.3e-11
MGI|MGI:1926273	201	Mrpl12 "mitochondrial ribosoma	0.694	0.666	0.316	2.8e-11

TAIR|locus:2080369 AT3G06040 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 104/193 (53%), Positives = 133/193 (68%)

Query:     1 MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPS 60
             MKL +L +++ SR   P +   +Q R LQ D V    K+KP KYKYP+ YDPYGPRP PS
Sbjct:     1 MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVS---KAKPKKYKYPSVYDPYGPRPQPS 57

Query:    61 DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEK 120
              K+++LAERIA+L+PEER+QI   L +   LPK Q IS++G+  G +    AG+  VEEK
Sbjct:    58 SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGI--GAKQDTGAGN--VEEK 113

Query:   121 KEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
             KEKT FDV            ++KEV+TF  LG+KEAKELVEK P +LKQG+TKEEA+ II
Sbjct:   114 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 173

Query:   181 EKIKAAGGVAIME 193
              KIKA GG+A+ME
Sbjct:   174 AKIKAVGGIAVME 186

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2020678 AT1G70190 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 63/165 (38%), Positives = 94/165 (56%)

Query:    36 DPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKL- 94
             D +  P  Y  PA +DP   R PP+D+V +L + I+SLT  E  ++   + K+  + +L 
Sbjct:    45 DQRKLPTDYD-PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELP 103

Query:    95 -----QPISTEGLDLGPQGGAPAGSAKVEEKK-EKTTFDVXXXXXXXXXXXXIVKEVKTF 148
                  +P +  G+ +G  GG  + S   EE K EKT F++            I+KE+++F
Sbjct:   104 TVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSF 163

Query:   149 FDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME 193
              DLG+KEAK LVEK P +LK GL+KEE   I+EK+KA G   ++E
Sbjct:   164 TDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2115385 AT4G36420 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 56/146 (38%), Positives = 83/146 (56%)

Query:    53 YGPRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPIST--EGLDLGPQGGA 110
             Y      S+ V ++   +++LT  E   ++  L ++ ++ +L  ++    G+ L P  GA
Sbjct:    35 YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSL-PGSGA 93

Query:   111 P--AGSAKVEEKKE-KTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVL 167
                AG    E+KKE KT FDV            ++KEV+T   LG+KEAK+LVEKAP +L
Sbjct:    94 SKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLL 153

Query:   168 KQGLTKEEASNIIEKIKAAGGVAIME 193
             K+G++KEEA  IIEK+KA G    ME
Sbjct:   154 KKGVSKEEAEKIIEKLKAVGAKVAME 179

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TAIR|locus:2120116 AT4G37660 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 52/133 (39%), Positives = 71/133 (53%)

Query:    62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKK 121
             K+ ++A+ +  L   E    SL    +  L +       G  +   G     SA  E K 
Sbjct:    41 KLERIADDLLKLNRIELYDYSLLFSHKIGLNRY------GSAVAVTGSVGDASASTETKT 94

Query:   122 -EKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
              EKTTFDV            ++KE++ F DLG+KEAK LVEKAPV++K GLTKEEA  I+
Sbjct:    95 AEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIM 154

Query:   181 EKIKAAGGVAIME 193
             EK+KA G +  +E
Sbjct:   155 EKLKAVGAIVALE 167

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

ASPGD|ASPL0000042202 AN2057 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 50/146 (34%), Positives = 78/146 (53%)

Query:    55 PRPPPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAP-AG 113
             P  P + K+ Q+ ++I+ L   E   +  +L  R ++P L P+   G  + P  GAP A 
Sbjct:    42 PAAPANPKITQIVDQISQLNLLETADLVASLKSRLNIPDL-PVG--GFAMAPGAGAPGAA 98

Query:   114 SAKVEEKK------EKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVL 167
             +A  EE++      EKT F++            ++KEVKT   L + ++K+ VE  P VL
Sbjct:    99 AAPAEEEEAAPPAQEKTLFNLKLESVDAAQKAKVIKEVKTLLGLSLVDSKKFVESVPKVL 158

Query:   168 KQGLTKEEASNIIEKIKAAGGVAIME 193
             K+ + KEEA  +IE +KA G  A+ME
Sbjct:   159 KESVPKEEAEKLIETLKAVGAKAVME 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

TAIR|locus:2056921 AT2G03130 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/85 (41%), Positives = 48/85 (56%)

Query:   109 GAPAGSAKVEEKKEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLK 168
             G   G A    K EKT F+V            I+KEV+    +G+KEA +LV KAP VLK
Sbjct:     7 GQSGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLK 66

Query:   169 QGLTKEEASNIIEKIKAAGGVAIME 193
              GL+KEE   ++EK+ A G  A+++
Sbjct:    67 TGLSKEEGEEVVEKLNALGAEAVLQ 91

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

FB|FBgn0011787 mRpL12 "mitochondrial ribosomal protein L12" [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 51/184 (27%), Positives = 84/184 (45%)

Query:    12 SRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIA 71
             +R  L +I+  +Q   +     P    S   K   PA   P G   PP+ K+  +   IA
Sbjct:     4 TRLALRQISRQVQLHRMYSAAAPAAAVSGAEKLVPPA---PEGAAKPPNPKLDSIVNNIA 60

Query:    72 SLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPA-GSAKVEEKKEKTTFDVXX 130
             +L   E  ++S  L ++ +LP  +         GP   APA    +   KK +T+F V  
Sbjct:    61 ALNLLEVAELSTLLKQKLNLP--ETAFAPQFAAGPARAAPAEDEEEAAPKKVQTSFKVKL 118

Query:   131 XXXXXXXXXXIVKEVKTFFD-LGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGV 189
                       ++KEVK   + + + +AK+ VE AP ++K+ + KEEA  + E +  AG +
Sbjct:   119 VKFDEKQKVALIKEVKNLLEGMNLVQAKKFVESAPTIVKEDIPKEEAEKLKEALSKAGAI 178

Query:   190 AIME 193
               +E
Sbjct:   179 IEIE 182

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0016049 "cell growth" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0003682 "chromatin binding" evidence=IGI

CGD|CAL0006345 orf19.2275 [Candida albicans (taxid:5476)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 43/141 (30%), Positives = 67/141 (47%)

Query:    55 PRPPPSD-KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQG-GAPA 112
             P   P D K+  + ++I++LT  E  Q+   L +R ++  +  +   G    P    APA
Sbjct:    35 PAKAPVDAKITTIVDQISTLTLLETSQLINELKERLNISDIS-LPVGGAQAAPVAQAAPA 93

Query:   113 GSAKVEEKKEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLT 172
                  EE +EKT F +            I+KEVK    L + E+K+ VE AP VLK+ + 
Sbjct:    94 EEEVKEEVEEKTIFSIKLESFDAKSKPKIIKEVKGMLGLSLVESKKFVESAPKVLKENVA 153

Query:   173 KEEASNIIEKIKAAGGVAIME 193
             KE+A  I   ++  G    +E
Sbjct:   154 KEDAEKIKATLEGLGAKVSLE 174

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

UNIPROTKB|E1C3B6 MRPL12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/136 (33%), Positives = 65/136 (47%)

Query:    60 SDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAK-VE 118
             S KV QL   IA LT  E   ++  L +   +P +  +        P   AP    + V 
Sbjct:    59 SPKVRQLVRDIAGLTLLEVADLNALLKETLKIPDVGVMPAGAAAHLPAQAAPQEEEEAVP 118

Query:   119 EKKEKTTFDVXXXXXXXXXXXXIVKEVKTFFD-LGMKEAKELVEKAPVVLKQGLTKEEAS 177
              KKEKT F V            ++KEVK F   + + +AK+LVE  P  +K  ++KEEA 
Sbjct:   119 MKKEKTHFSVRLTELKATDKVKLIKEVKNFVPGINLVQAKKLVESLPQEIKANVSKEEAE 178

Query:   178 NIIEKIKAAGGVAIME 193
              I   ++AAGG  ++E
Sbjct:   179 KIKTALEAAGGTVVLE 194

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0006390 "transcription from mitochondrial promoter" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

MGI|MGI:1926273 Mrpl12 "mitochondrial ribosomal protein L12" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 45/142 (31%), Positives = 69/142 (48%)

Query:    58 PPSDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGP-QGGAPAGSAK 116
             PP  K+ QL + IASLT  E   ++  L K   +  +  +   G+  GP    APA  A 
Sbjct:    62 PP--KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGPVSAAAPASEAA 119

Query:   117 VEE----KKEKTTFDVXXXXXXXXXXXXIVKEVKTFFD-LGMKEAKELVEKAPVVLKQGL 171
              EE    +KE+T F V            ++KE+K +   + + +AK+LVE  P  +K  +
Sbjct:   120 EEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANV 179

Query:   172 TKEEASNIIEKIKAAGGVAIME 193
              K EA  I   ++A GG  ++E
Sbjct:   180 AKAEAEKIKAALEAVGGTVVLE 201

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006390 "transcription from mitochondrial promoter" evidence=ISO

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
cd00387	127	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L1	4e-33
CHL00083	131	CHL00083, rpl12, ribosomal protein L12	8e-18
PRK00157	123	PRK00157, rplL, 50S ribosomal protein L7/L12; Revi	2e-17
COG0222	124	COG0222, RplL, Ribosomal protein L7/L12 [Translati	2e-16
pfam00542	68	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12	3e-16
TIGR00855	123	TIGR00855, L12, ribosomal protein L7/L12	2e-15

>gnl|CDD|100102 cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12

 Score =  114 bits (288), Expect = 4e-33
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 7/132 (5%)

Query: 62  KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAP-AGSAKVEEK 120
           KV ++ E +  LT  E  ++   L ++F +      +           AP A +A   E 
Sbjct: 2   KVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAA------AAAAAAPAAAAAAAAEA 55

Query: 121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV LE F AA K+ ++KEV+    LG+KEAK+LVE AP VLK+G++KEEA  I 
Sbjct: 56  EEKTEFDVVLESFGAAKKIAVIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEEAEEIK 115

Query: 181 EKIKAAGGVAIM 192
           +K++ AG    +
Sbjct: 116 KKLEEAGAKVEL 127

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and contain binding sites for other molecules. Initiation factors, elongation factors, and release factors are known to interact with the L7/L12 stalk during their GTP-dependent cycles. The binding site for the factors EF-Tu and EF-G comprises L7/L12, L10, L11, the L11-binding region of 23S rRNA, and the sarcin-ricin loop of 23S rRNA. Removal of L7/L12 has minimal effect on factor binding and it has been proposed that L7/L12 induces the catalytically active conformation of EF-Tu and EF-G, thereby stimulating the GTPase activity of both factors. In eukaryotes, the proteins that perform the equivalent function to L7/L12 are called P1 and P2, which do not share sequence similarity with L7/L12. However, a bacterial L7/L12 homolog is found in some eukaryotes, in mitochondria and chloroplasts. In archaea, the protein equivalent to L7/L12 is called aL12 or L12p, but it is closer in sequence to P1 and P2 than to L7/L12. Length = 127

>gnl|CDD|214358 CHL00083, rpl12, ribosomal protein L12

 Score = 75.4 bits (186), Expect = 8e-18
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query: 110 APAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQ 169
           A A +   EE +EKT FDV LE+  A  ++ ++K V++   LG+KEAKELVE  P  +K+
Sbjct: 48  AAAAAQAAEEVEEKTEFDVILEEVPADKRIAVLKVVRSLTGLGLKEAKELVESLPKTIKE 107

Query: 170 GLTKEEASNIIEKIKAAGGVAI 191
           G++KEEA    ++++ AG   I
Sbjct: 108 GISKEEAEEAKKQLEEAGAKVI 129

Length = 131

>gnl|CDD|234671 PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 108 GGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVL 167
             A A +A  EEK   T FDV L+      K+ ++K V+    LG+KEAK+LVE AP V+
Sbjct: 42  AAAAAAAAAAEEK---TEFDVVLKSA-GDKKIAVIKAVREITGLGLKEAKDLVEGAPKVV 97

Query: 168 KQGLTKEEASNIIEKIKAAG 187
           K+G++KEEA  I +K++ AG
Sbjct: 98  KEGVSKEEAEEIKKKLEEAG 117

Length = 123

>gnl|CDD|223300 COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 106 PQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPV 165
           P   A AG+A  E  +EKT FDV L+      K+ ++K V+    LG+KEAK+LVE AP 
Sbjct: 38  PVAAAAAGAAAAEAAEEKTEFDVVLKSA-GGKKIAVIKVVRELTGLGLKEAKDLVEGAPK 96

Query: 166 VLKQGLTKEEASNIIEKIKAAGG 188
           VLK+G++KEEA  I +K++ AG 
Sbjct: 97  VLKEGVSKEEAEEIKKKLEEAGA 119

Length = 124

>gnl|CDD|201294 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain

 Score = 69.4 bits (171), Expect = 3e-16
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 126 FDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKA 185
           FDV L       K+ ++K V+    LG+KEAK+LVE AP  +K+G++KEEA  I +K++ 
Sbjct: 2   FDVVLTSA-GDKKIAVIKVVREITGLGLKEAKDLVEGAPKTIKEGVSKEEAEEIKKKLEE 60

Query: 186 AGGVAIME 193
           AG    ++
Sbjct: 61  AGAKVELK 68

Length = 68

>gnl|CDD|233152 TIGR00855, L12, ribosomal protein L7/L12

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 109 GAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLK 168
           GA   +A     +EKT FDV L+      K+ ++K V+    LG+KEAK+LVE AP VLK
Sbjct: 40  GAAGAAAAAAAAEEKTEFDVILKGA-GDNKIAVIKVVREITGLGLKEAKDLVEGAPKVLK 98

Query: 169 QGLTKEEASNIIEKIKAAGG 188
           +G++KEEA  + +K++ AG 
Sbjct: 99  EGVSKEEAEELKKKLEEAGA 118

Ribosomal proteins L7 and L12 are synonymous except for post-translational modification of the N-terminal amino acid. THis model resembles pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG1715	187	consensus Mitochondrial/chloroplast ribosomal prot	100.0
CHL00083	131	rpl12 ribosomal protein L12	100.0
cd00387	127	Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosom	100.0
TIGR00855	126	L12 ribosomal protein L7/L12. THis model resembles	100.0
COG0222	124	RplL Ribosomal protein L7/L12 [Translation, riboso	100.0
PRK00157	123	rplL 50S ribosomal protein L7/L12; Reviewed	100.0
PF00542	68	Ribosomal_L12: Ribosomal protein L7/L12 C-terminal	99.92
PRK06771	93	hypothetical protein; Provisional	97.82
PF02617	82	ClpS: ATP-dependent Clp protease adaptor protein C	85.29

>KOG1715 consensus Mitochondrial/chloroplast ribosomal protein L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-50  Score=334.61  Aligned_cols=187  Identities=40%  Similarity=0.508  Sum_probs=154.4

Q ss_pred             CchhhhhHhhhcCCCCCCccchhhhhhhcccCCCCCCCCCCccCCCCCcCCCCCCCCCCChhHHHHHHHHhcCCHHHHHH
Q 029444            1 MKLTALAKSICSRPFLPRITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPPPSDKVVQLAERIASLTPEERRQ   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~s~kV~~ivd~I~~LtllE~se   80 (193)
                      |..+++.+++.++.|++.++++.+.+.-..+...  . .....+.++.+|+|++++.++++||.+|+|+|++|||+|.+|
T Consensus         1 ~~~~s~~~~~~sr~~~r~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~KI~~iv~eIssLtLlE~s~   77 (187)
T KOG1715|consen    1 SIATSIRSSSLSRLALRSISRSVPRSIEYPHAFS--S-SKSSTLSHRATPLPPIAAVPPPPKISKIVDEISSLTLLETSD   77 (187)
T ss_pred             CcccchhhhhhhhhhhhhhcccccceecchhhcC--c-ccccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHH
Confidence            4567788888877888888888887554444222  1 245556679999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHH
Q 029444           81 ISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELV  160 (193)
Q Consensus        81 Lv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lV  160 (193)
                      |+++|+++|||+..+.+++++.  |++++ +++++.++.++|+|.|||+|++||+.+||+||||||.+|||||+|||+||
T Consensus        78 L~~~Lk~kl~i~e~~~~~a~~~--g~~~~-~~~~a~ee~k~ekt~FdVkL~~fda~~KIkVIKEVR~~tgL~LkeAKklV  154 (187)
T KOG1715|consen   78 LVDLLKKKLNIPELPLAPAAAA--GAAAP-DAGGAEEEAKKEKTTFDVKLEKFDASSKIKVIKEVRALTGLGLKEAKKLV  154 (187)
T ss_pred             HHHHHHHHcCCCcccchhhccc--cCCCC-CcccccccchhhcceEEEEEeecCccchhHHHHHHHHhccccHHHHHHHH
Confidence            9999999999998865543222  11111 11222334455888899999999999999999999999999999999999


Q ss_pred             HhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          161 EKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       161 Es~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      |++|+++|+||+|||||+||++|+++||+|+||
T Consensus       155 E~aP~ilKegvtKeEAEkik~kLea~GakV~le  187 (187)
T KOG1715|consen  155 EKAPKILKEGVTKEEAEEIKEKLEAAGAKVVLE  187 (187)
T ss_pred             HhccHHHHcCCCHHHHHHHHHHHHHcCCeEeeC
Confidence            999999999999999999999999999999998

>CHL00083 rpl12 ribosomal protein L12

Probab=100.00  E-value=1e-42  Score=278.36  Aligned_cols=130  Identities=34%  Similarity=0.510  Sum_probs=110.8

Q ss_pred             ChhHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhH
Q 029444           60 SDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKL  139 (193)
Q Consensus        60 s~kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI  139 (193)
                      |+++++|+|+|++|||+|++||++.|+++|||++.+++++++++ +  +++++ ++.+++.+|||+|||+|++|++++||
T Consensus         2 s~k~~~ivd~i~~LTllE~~eLv~~le~~fgv~~~~~~a~~~~~-~--~a~~~-~~~~~~~~EKT~F~V~L~~~~~~~Ki   77 (131)
T CHL00083          2 STKINEIIEELKSLTLLEAAELVKQIEETFGVDASAPVGGGMMS-A--PAAAA-AQAAEEVEEKTEFDVILEEVPADKRI   77 (131)
T ss_pred             CchHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhhhhhcc-c--cCccc-ccccchhhhcceeeEEEeecCCcchH
Confidence            68999999999999999999999999999999987654321111 1  01111 11123456999999999999888999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          140 KIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       140 ~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      +|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        78 ~vIK~vr~it~lgLkeaK~lVe~~P~~ike~v~KeeAe~ik~~le~~Ga~v~lk  131 (131)
T CHL00083         78 AVLKVVRSLTGLGLKEAKELVESLPKTIKEGISKEEAEEAKKQLEEAGAKVIIK  131 (131)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            999999999999999999999999999999999999999999999999999983

>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12

Probab=100.00  E-value=1.9e-42  Score=275.23  Aligned_cols=127  Identities=39%  Similarity=0.536  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHH
Q 029444           61 DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLK  140 (193)
Q Consensus        61 ~kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~  140 (193)
                      .++++|+|+|++|||+|++||++.|+++|||++.++.++ +++  ++++  ++++..++++|||+|||+|++||+++||+
T Consensus         1 ~~~~~i~d~i~~LtllE~~eLv~~le~~~gv~~~~~~~~-~~~--~a~~--~~~~~~~~~~EKt~F~V~L~~~~~~~Ki~   75 (127)
T cd00387           1 LKVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAA-AAA--AAPA--AAAAAAAEAEEKTEFDVVLESFGAAKKIA   75 (127)
T ss_pred             CcHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCccccccc-ccc--cCcc--cccccccchhhcceEEEEEeeCCchhhHH
Confidence            368999999999999999999999999999987632111 111  1111  11111223469999999999999889999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          141 IVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       141 VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      |||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus        76 vIK~VR~it~LgLkEAK~lVe~~P~~iKe~vsKeeAE~ik~kLe~aGA~Vel  127 (127)
T cd00387          76 VIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEEAEEIKKKLEEAGAKVEL  127 (127)
T ss_pred             HHHHHHHHhCCChHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEEeC
Confidence            9999999999999999999999999999999999999999999999999986

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and

>TIGR00855 L12 ribosomal protein L7/L12

Probab=100.00  E-value=1.7e-40  Score=264.02  Aligned_cols=122  Identities=35%  Similarity=0.532  Sum_probs=105.3

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029444           62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI  141 (193)
Q Consensus        62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V  141 (193)
                      ..++|+|+|++|||+|++||++.|+++|||++.+++++     ++++++ +   ++++++|||+|||+|+.++ ++||+|
T Consensus         5 ~~~~ive~i~~LTllE~~eLv~~lee~fgV~a~a~~a~-----~~a~~~-~---~~~~~eEKt~f~V~L~~~~-~~Ki~v   74 (126)
T TIGR00855         5 SKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAA-----GAAGAA-A---AAAAAEEKTEFDVILKGAG-DNKIAV   74 (126)
T ss_pred             cHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCccchhhh-----cccccc-c---ccccccccceeeEEEecCC-cchhHH
Confidence            45899999999999999999999999999998765421     111111 1   1233469999999999987 689999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          142 VKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       142 IKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      ||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        75 IK~vR~itgLgLkEAK~lVe~~P~~ike~vsKeeAe~ik~~Le~aGa~veik  126 (126)
T TIGR00855        75 IKVVREITGLGLKEAKDLVEGAPKVLKEGVSKEEAEELKKKLEEAGAKVEVK  126 (126)
T ss_pred             HHHHHHHcCCcHHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            9999999999999999999999999999999999999999999999999983

THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.

>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-40  Score=259.42  Aligned_cols=122  Identities=37%  Similarity=0.529  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHH
Q 029444           61 DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLK  140 (193)
Q Consensus        61 ~kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~  140 (193)
                      -.+++|+++|++||++|+++|++.++++|||++.++++++++     + +++    .+..+|||+|||+|++++ ++||+
T Consensus         3 ~~~e~iie~i~~~svlel~eLvk~~eekfgVsaaa~va~a~~-----~-a~a----~~aaeEktefdVvL~~~g-~kKI~   71 (124)
T COG0222           3 LTKEQIIEALKELTVLELSELVKALEEKFGVTAAAPVAAAAA-----G-AAA----AEAAEEKTEFDVVLKSAG-GKKIA   71 (124)
T ss_pred             CcHHHHHHHHHHhhHHHHHHHHHHHHHHhCCccchhhhhccc-----c-ccc----cccccccceeEEEecccC-Ccchh
Confidence            357899999999999999999999999999999877543211     1 111    122458999999999995 79999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          141 IVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       141 VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      |||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|++.
T Consensus        72 VIK~vR~itGLGLKEAKdlVe~aP~~~KE~v~k~eAe~~kkkleeaGa~V~~k  124 (124)
T COG0222          72 VIKVVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIKKKLEEAGAKVELK  124 (124)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhCcHHHHccCCHHHHHHHHHHHHHcCCeEeeC
Confidence            99999999999999999999999999999999999999999999999999974

>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed

Probab=100.00  E-value=1.2e-39  Score=258.23  Aligned_cols=122  Identities=33%  Similarity=0.499  Sum_probs=106.1

Q ss_pred             ChhHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhH
Q 029444           60 SDKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKL  139 (193)
Q Consensus        60 s~kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI  139 (193)
                      +-++++|+|+|++|||+|++||++.|+++|||++.+++++     +++++  +    +++++|||+|||+|++| +++||
T Consensus         2 ~~~~~~i~e~i~~LtllE~~eLv~~lee~fgv~a~~~~~~-----~~~~~--~----~~~~eEkt~f~V~L~~~-~~kKi   69 (123)
T PRK00157          2 ALTKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAA-----AAAAA--A----AAAAEEKTEFDVVLKSA-GDKKI   69 (123)
T ss_pred             CccHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhcc-----ccccc--c----ccccccccceeEEEecc-chhhH
Confidence            3468999999999999999999999999999998754321     11111  1    12345999999999999 47999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          140 KIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       140 ~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      +|||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        70 ~vIK~vR~itgLgLkEAK~lVe~~P~~ike~v~keeAe~ik~~Le~aGa~velk  123 (123)
T PRK00157         70 AVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEEAGAKVELK  123 (123)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEEeeC
Confidence            999999999999999999999999999999999999999999999999999984

>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.92  E-value=1.5e-25  Score=161.22  Aligned_cols=68  Identities=46%  Similarity=0.743  Sum_probs=60.3

Q ss_pred             eeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          125 TFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       125 ~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      +|||+|++| +++||++||+||++|||||+|||++||++|.+|+++++++|||+|+++|+++||+|+|+
T Consensus         1 ef~V~L~~~-~~~ki~vIK~vR~~tgl~L~eAK~~vd~~p~~ik~~v~keeAe~ik~~Le~aGa~v~l~   68 (68)
T PF00542_consen    1 EFDVVLKSF-GEKKIKVIKEVREITGLGLKEAKKLVDSLPKVIKEGVSKEEAEEIKKKLEAAGAKVELK   68 (68)
T ss_dssp             SEEEEEEE--TTGHHHHHHHHHHHC---HHHHHHHHCTTTEEEEEEE-HHHHHHHHHHHHCCT-EEEEE
T ss_pred             CeEEEEeec-ccchHHHHHHHHHHhCCcHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            699999999 68999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.

>PRK06771 hypothetical protein; Provisional

Probab=97.82  E-value=1.5e-05  Score=61.17  Aligned_cols=28  Identities=32%  Similarity=0.494  Sum_probs=26.5

Q ss_pred             chhHHHHHHHHHhhcCChHHHHHHHHhC
Q 029444          136 AAKLKIVKEVKTFFDLGMKEAKELVEKA  163 (193)
Q Consensus       136 ~kKI~VIKeVR~iT~LGLKEAK~lVEs~  163 (193)
                      .+||+.||.+|+.||+||+|||+.||++
T Consensus        66 Gkki~AIK~~Re~tG~~L~eAK~yVD~L   93 (93)
T PRK06771         66 GQTVTAVKRVREAFGFSLLEAKQYVDKL   93 (93)
T ss_pred             CCchHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            5899999999999999999999999975

>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP

Probab=85.29  E-value=2.6  Score=30.54  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             ccceeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCc----hhhhcCCCHHHHHHHHHHHHHcC
Q 029444          122 EKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAP----VVLKQGLTKEEASNIIEKIKAAG  187 (193)
Q Consensus       122 EKT~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P----~vIKe~vsKeEAEeik~kLeaaG  187 (193)
                      +...|.|+|=+=+-..--.||..++...|+...+|.++...+-    .+|.. -++++||....+|...|
T Consensus         3 ~~~~~~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G~avv~~-~~~e~ae~~~~~l~~~g   71 (82)
T PF02617_consen    3 EPDMYRVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREGRAVVGT-GSREEAEEYAEKLQRAG   71 (82)
T ss_dssp             S--EEEEEEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHSEEEEEE-EEHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcCCEeeee-CCHHHHHHHHHHHHHHh
Confidence            3468999996655456779999999999999999999987542    35544 58999999999999999

ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
1rqs_A	74	Nmr Structure Of C-Terminal Domain Of Ribosomal Pro		3e-05
1rqu_A	120	Nmr Structure Of L7 Dimer From E.Coli Length = 120		5e-05
2xtg_L	121	Trna Tranlocation On The 70s Ribosome: The Pre- Tra		6e-05
2gya_3	119	Structure Of The 50s Subunit Of A Pre-Translocation		6e-05
2ftc_E	137	Structural Model For The Large Subunit Of The Mamma		6e-05
2zjq_5	122	Interaction Of L7 With L11 Induced By Microccocin B		2e-04
2j01_M	125	Structure Of The Thermus Thermophilus 70s Ribosome		2e-04
2bcw_B	68	Coordinates Of The N-Terminal Domain Of Ribosomal P		3e-04

>pdb|1RQS|A Chain A, Nmr Structure Of C-Terminal Domain Of Ribosomal Protein L7 From E.Coli Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 122 EKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIE 181
           EKT FDV            ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + +
Sbjct: 4   EKTEFDVILKAAGANKVA-VIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKK 62
Query: 182 KIKAAG 187
            ++ AG
Sbjct: 63  ALEEAG 68

>pdb|1RQU|A Chain A, Nmr Structure Of L7 Dimer From E.Coli Length = 120

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 121 KEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV            ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + 
Sbjct: 49  EEKTEFDVILKAAGANKVA-VIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALK 107
Query: 181 EKIKAAG 187
           + ++ AG
Sbjct: 108 KALEEAG 114

>pdb|2XTG|L Chain L, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) Length = 121

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 121 KEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV            ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + 
Sbjct: 50  EEKTEFDVILKAAGANKVA-VIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALK 108
Query: 181 EKIKAAG 187
           + ++ AG
Sbjct: 109 KALEEAG 115

>pdb|2GYA|3 Chain 3, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 119

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 121 KEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV            ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + 
Sbjct: 48  EEKTEFDVILKAAGANKVA-VIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALK 106
Query: 181 EKIKAAG 187
           + ++ AG
Sbjct: 107 KALEEAG 113

>pdb|2FTC|E Chain E, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 137

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 62  KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAK----- 116
           K+ QL + IASLT  E   ++  L K     K+Q +      L P GG   G+A      
Sbjct: 2   KIQQLVQDIASLTLLEISDLNELLKKTL---KIQDVG-----LMPMGGMVPGAAPAPTAP 53
Query: 117 ------VEEKKEKTTFDVXXXXXXXXXXXXIVKEVKTFFD-LGMKEAKELVEKAPVVLKQ 169
                 V ++KE+T F V            ++KE+K +   + + +AK+LVE  P  +K 
Sbjct: 54  EAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKA 113
Query: 170 GLTKEEASNIIEKIKAAGGVAIME 193
            + K EA  I   ++A GG  ++E
Sbjct: 114 NVAKAEAEKIKAALEAVGGTVVLE 137

>pdb|2ZJQ|5 Chain 5, Interaction Of L7 With L11 Induced By Microccocin Binding To The Deinococcus Radiodurans 50s Subunit Length = 122

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 121 KEKTTFDVXXXXXXXXXXXXIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII 180
           +EKT FDV            ++KE++    LG+KEAK++ EK   VLK+G+ K+EA  + 
Sbjct: 52  EEKTEFDVVLIDAGASKIN-VIKEIRGITGLGLKEAKDMSEKGG-VLKEGVAKDEAEKMK 109
Query: 181 EKIKAAG 187
            +++AAG
Sbjct: 110 AQLEAAG 116

>pdb|2BCW|B Chain B, Coordinates Of The N-Terminal Domain Of Ribosomal Protein L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A Portion Of The G' Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf- GGdpFusidic Acid Complex Length = 68

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 141 IVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAG 187
           ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + + ++ AG
Sbjct: 16  VIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAG 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	3e-27
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	9e-17
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	7e-16
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	1e-15
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	2e-15
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 137

 Score = 99.1 bits (247), Expect = 3e-27
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 4/136 (2%)

Query: 62  KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQ---GGAPAGSAKVE 118
           K+ QL + IASLT  E   ++  L K   +  +  +   G+  G         A    V 
Sbjct: 2   KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVP 61

Query: 119 EKKEKTTFDVKLEKFEAAAKLKIVKEVKTFF-DLGMKEAKELVEKAPVVLKQGLTKEEAS 177
           ++KE+T F V+L + +   K+K++KE+K +   + + +AK+LVE  P  +K  + K EA 
Sbjct: 62  KQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAE 121

Query: 178 NIIEKIKAAGGVAIME 193
            I   ++A GG  ++E
Sbjct: 122 KIKAALEAVGGTVVLE 137

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A Length = 121

 Score = 71.7 bits (176), Expect = 9e-17
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 110 APAGSAKVEEKKEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQ 169
               +  VE  +EKT FDV L+    A K+ ++K V+    LG+KEAK+LVE AP  LK+
Sbjct: 39  VAVAAGPVEAAEEKTEFDVILKAA-GANKVAVIKAVRGATGLGLKEAKDLVESAPAALKE 97

Query: 170 GLTKEEASNIIEKIKAAGG 188
           G++K++A  + + ++ AG 
Sbjct: 98  GVSKDDAEALKKALEEAGA 116

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Length = 74

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 122 EKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIE 181
           EKT FDV L+    A K+ ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + +
Sbjct: 4   EKTEFDVILKAA-GANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKK 62

Query: 182 KIKAAGG 188
            ++ AG 
Sbjct: 63  ALEEAGA 69

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I Length = 128

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 11/127 (8%)

Query: 65  QLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKT 124
           ++ E I  LT  E  ++   L  +F +    P++             AG+A    ++EKT
Sbjct: 5   EIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVA-------VAAAPVAGAAAGAAQEEKT 57

Query: 125 TFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAP---VVLKQGLTKEEASNIIE 181
            FDV L+ F    K++++K V+    LG+KEAK+LVEKA     V+K G++KEEA  I +
Sbjct: 58  EFDVVLKSF-GQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKK 116

Query: 182 KIKAAGG 188
           K++ AG 
Sbjct: 117 KLEEAGA 123

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1 Length = 122

 Score = 67.8 bits (166), Expect = 3e-15
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 13/124 (10%)

Query: 65  QLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKT 124
            L +++  LT  E   +   L + +           G+            A     +EKT
Sbjct: 7   ALIDQLGQLTIMELADLIDGLKETW-----------GVTAAVAVSGGGAGAASPAAEEKT 55

Query: 125 TFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIK 184
            FDV L     A+K+ ++KE++    LG+KEAK++ EK  V+ K+G+ K+EA  +  +++
Sbjct: 56  EFDVVLIDA-GASKINVIKEIRGITGLGLKEAKDMSEKGGVL-KEGVAKDEAEKMKAQLE 113

Query: 185 AAGG 188
           AAG 
Sbjct: 114 AAGA 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 3   LTALAKSICSRPF-LPR---ITGPLQFRLLQHDFVPRDPKSKPIKYKYPAFYDPYGPRPP 58
            + L K +  RP  LPR    T P +  ++      RD  +    +K+            
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNC--------- 352

Query: 59  PSDKVVQLAER-IASLTPEERRQISLTLFKRFS-LPKLQPISTEGLDL 104
             DK+  + E  +  L P E R+    +F R S  P    I T  L L
Sbjct: 353 --DKLTTIIESSLNVLEPAEYRK----MFDRLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 39/180 (21%)

Query: 23  LQFRLLQHDFVPRDPK--SKPI-KYKYPAFYDPYGPRPPPSD-----------KVVQLAE 68
           +   L     +  +       +  Y  P  +D     PP  D           K ++  E
Sbjct: 431 IYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 69  RIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKV--EEKKEKTTF 126
           R+        R + L    RF   K++              A         + K  K   
Sbjct: 489 RMTLF-----RMVFLDF--RFLEQKIR-------HDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 127 DVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAA 186
                K+E     ++V  +  F  L   E   +  K   +L+  L  E+ +   E  K  
Sbjct: 535 CDNDPKYE-----RLVNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	100.0
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	100.0
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	100.0
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	100.0
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	100.0
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	99.97
1dd4_C	40	50S ribosomal protein L7/L12; dimer formation, fle	99.1
1zav_U	30	50S ribosomal protein L7/L12; ribosome structure a	98.58
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	84.9

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=1.4e-46  Score=301.31  Aligned_cols=133  Identities=31%  Similarity=0.466  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCC---chhhhhcccceeEEEEeecccch
Q 029444           61 DKVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGS---AKVEEKKEKTTFDVKLEKFEAAA  137 (193)
Q Consensus        61 ~kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~---a~~e~~~EKT~FdV~L~~~~a~k  137 (193)
                      +||++|+|+|++|||+|++||++.|+++|||++.++++++++++++++++++++   +.+++++|||+|||+|++||+++
T Consensus         1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a~~   80 (137)
T 2ftc_E            1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVD   80 (137)
T ss_pred             CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccccCCCCccccccccccccccccCCeeEEEeeccCccc
Confidence            589999999999999999999999999999998765544333222211111111   11222468999999999999899


Q ss_pred             hHHHHHHHHHh-hcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEeeC
Q 029444          138 KLKIVKEVKTF-FDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIME  193 (193)
Q Consensus       138 KI~VIKeVR~i-T~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~iE  193 (193)
                      ||+|||+||++ |||||||||+|||++|++||+|+||||||+||++|+++||+|+||
T Consensus        81 KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele  137 (137)
T 2ftc_E           81 KVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE  137 (137)
T ss_pred             hhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            99999999997 999999999999999999999999999999999999999999997

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1

Probab=100.00  E-value=2.3e-41  Score=266.56  Aligned_cols=118  Identities=33%  Similarity=0.458  Sum_probs=103.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029444           62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI  141 (193)
Q Consensus        62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V  141 (193)
                      ++++|+|+|++||++|++||++.|+++|||++++|++++    +++  + + +   ++++|||+|||+|++|+ ++||+|
T Consensus         4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a~a----~~~--a-~-a---~a~eEKteFdV~L~~~~-~~KI~V   71 (122)
T 2zjq_5            4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG----GAG--A-A-S---PAAEEKTEFDVVLIDAG-ASKINV   71 (122)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccccc----CCC--c-c-c---ccccccceeEEEEecCC-cchHHH
Confidence            468999999999999999999999999999987653211    111  1 1 1   12358999999999997 799999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          142 VKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       142 IKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      ||+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus        72 IK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel  121 (122)
T 2zjq_5           72 IKEIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL  121 (122)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999999999999999999999 9999999999999999999999999997

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I

Probab=100.00  E-value=1.3e-42  Score=275.43  Aligned_cols=123  Identities=36%  Similarity=0.552  Sum_probs=105.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029444           62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI  141 (193)
Q Consensus        62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V  141 (193)
                      .+++|+|+|++||++|++||++.|+++|||++.++++++   ++++++    ++..++++|||+|||+|++|+ ++||+|
T Consensus         2 ~~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~~~~~~----~a~~~a~eEKteFdV~L~~~~-~~KI~V   73 (128)
T 1dd3_A            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---AAPVAG----AAAGAAQEEKTEFDVVLKSFG-QNKIQV   73 (128)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---HHHHHH----HHHHHHHHTTSSEEEEEEECT-TCHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---cccccc----ccccccccccceeeEEEecCC-cchHHH
Confidence            368999999999999999999999999999976543221   111000    111133469999999999997 799999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhCch---hhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          142 VKEVKTFFDLGMKEAKELVEKAPV---VLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       142 IKeVR~iT~LGLKEAK~lVEs~P~---vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      ||+||++|||||||||+|||++|+   +||+|+||+|||+||++|+++||+|+|
T Consensus        74 IK~VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel  127 (128)
T 1dd3_A           74 IKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL  127 (128)
T ss_dssp             HHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            999999999999999999999999   999999999999999999999999997

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A

Probab=100.00  E-value=2.9e-42  Score=271.27  Aligned_cols=117  Identities=31%  Similarity=0.484  Sum_probs=27.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCCCchhhhhcccceeEEEEeecccchhHHH
Q 029444           62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQPISTEGLDLGPQGGAPAGSAKVEEKKEKTTFDVKLEKFEAAAKLKI  141 (193)
Q Consensus        62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~~~~~~~~~~~aa~~~a~~e~~~EKT~FdV~L~~~~a~kKI~V  141 (193)
                      .+++|+|+|++||++|++||++.|+++|||+++++++      ++ ++  +    +++.+|||+|||+|++|+ ++||+|
T Consensus         4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a------~~-a~--~----a~a~eEKteFdV~L~~~g-~~Ki~V   69 (121)
T 3sgf_J            4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA------VA-AG--P----VEAAEEKTEFDVILKAAG-ANKVAV   69 (121)
T ss_dssp             CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc------cc-cc--c----cccccccceeEEEEecCc-hhhHHH
Confidence            5789999999999999999999999999999875431      11 11  1    122358999999999996 799999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          142 VKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       142 IKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      ||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus        70 IK~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel  120 (121)
T 3sgf_J           70 IKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV  120 (121)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence            999999999999999999999999999999999999999999999999987

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B

Probab=99.97  E-value=1.7e-31  Score=194.47  Aligned_cols=71  Identities=41%  Similarity=0.627  Sum_probs=66.0

Q ss_pred             cccceeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       121 ~EKT~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      +|||+|||+|++|+ ++||+|||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus         3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel   73 (74)
T 1ctf_A            3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   73 (74)
T ss_dssp             ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            48999999999997 799999999999999999999999999999999999999999999999999999997

>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1

Probab=99.10  E-value=9.9e-11  Score=76.07  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCc
Q 029444           62 KVVQLAERIASLTPEERRQISLTLFKRFSLPKLQP   96 (193)
Q Consensus        62 kV~~ivd~I~~LtllE~seLv~~leekfgv~~~~~   96 (193)
                      ++++|+|+|++||++|++||++.||++|||+++++
T Consensus         2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa~   36 (40)
T 1dd4_C            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAP   36 (40)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC-
T ss_pred             CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCcccc
Confidence            47899999999999999999999999999987643

>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C

Probab=98.58  E-value=3.9e-08  Score=60.25  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=27.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 029444           63 VVQLAERIASLTPEERRQISLTLFKRFS   90 (193)
Q Consensus        63 V~~ivd~I~~LtllE~seLv~~leekfg   90 (193)
                      +++|+|+|++||++|++||++.||++||
T Consensus         3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U            3 IDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999998

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=84.90  E-value=0.67  Score=32.36  Aligned_cols=26  Identities=8%  Similarity=0.152  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHhCc
Q 029444          139 LKIVKEVKTFFDLGMKEAKELVEKAP  164 (193)
Q Consensus       139 I~VIKeVR~iT~LGLKEAK~lVEs~P  164 (193)
                      ...||++|+.||.|++|+|+..+.+-
T Consensus        10 ~~~Vk~LRe~TGag~~dcKkAL~e~~   35 (64)
T 2cp9_A           10 KELLMKLRRKTGYSFVNCKKALETCG   35 (64)
T ss_dssp             CHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            36799999999999999999766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1ctfa_	68	d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal	1e-13
d1dd3a2	71	d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-ter	1e-13

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (149), Expect = 1e-13
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 126 FDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKA 185
           FDV L+    A K+ ++K V+    LG+KEAK+LVE AP  LK+G++K++A  + + ++ 
Sbjct: 2   FDVILKAA-GANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 60

Query: 186 AGGVAIM 192
           AG    +
Sbjct: 61  AGAEVEV 67

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 71

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 126 FDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAP---VVLKQGLTKEEASNIIEK 182
           FDV L+ F    K++++K V+    LG+KEAK+LVEKA     V+K G++KEEA  I +K
Sbjct: 2   FDVVLKSF-GQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKK 60

Query: 183 IKAAGG 188
           ++ AG 
Sbjct: 61  LEEAGA 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2zjq51	71	Ribosomal protein L7/12, C-terminal domain {Deinoc	99.96
d1ctfa_	68	Ribosomal protein L7/12, C-terminal domain {Escher	99.95
d1dd3a2	71	Ribosomal protein L7/12, C-terminal domain {Thermo	99.95
d1dd3a1	57	Ribosomal protein L7/12, oligomerisation (N-termin	99.04
d2gyc31	47	Ribosomal protein L7/12, oligomerisation (N-termin	98.54
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	98.09
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	93.55
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	90.61
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	89.26

>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.96  E-value=4.9e-30  Score=183.89  Aligned_cols=70  Identities=41%  Similarity=0.628  Sum_probs=66.9

Q ss_pred             cccceeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          121 KEKTTFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       121 ~EKT~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      +|||+|||+|++|| ++||+|||+||++|||||+|||+|||+ |.+||+|++|+|||++|++|+++||+|+|
T Consensus         1 EEKt~F~V~L~~~~-~~Ki~vIK~VR~it~LgLkeAK~lVe~-p~~ike~vsKeeAE~~k~~Le~aGA~Vel   70 (71)
T d2zjq51           1 EEKTEFDVVLIDAG-ASKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVEL   70 (71)
T ss_pred             CCCcEEEEEEeeCC-cchhhHHHHHHHhcCCCHHHHHhhccC-chHhhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            38999999999998 579999999999999999999999998 77999999999999999999999999987

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.2e-29  Score=179.13  Aligned_cols=67  Identities=39%  Similarity=0.612  Sum_probs=65.1

Q ss_pred             eeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          125 TFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       125 ~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      +|||+|+++| ++||+|||+||++|||||+|||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus         1 EF~V~L~~~~-~~Ki~vIK~VR~it~lgLkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA~Vel   67 (68)
T d1ctfa_           1 EFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   67 (68)
T ss_dssp             CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             CeEEEEccCC-cchhHHHHHHHHhcCCCHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            6999999998 579999999999999999999999999999999999999999999999999999987

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=2.2e-28  Score=175.16  Aligned_cols=67  Identities=45%  Similarity=0.688  Sum_probs=64.1

Q ss_pred             eeEEEEeecccchhHHHHHHHHHhhcCChHHHHHHHHhCch---hhhcCCCHHHHHHHHHHHHHcCCeEee
Q 029444          125 TFDVKLEKFEAAAKLKIVKEVKTFFDLGMKEAKELVEKAPV---VLKQGLTKEEASNIIEKIKAAGGVAIM  192 (193)
Q Consensus       125 ~FdV~L~~~~a~kKI~VIKeVR~iT~LGLKEAK~lVEs~P~---vIKe~vsKeEAEeik~kLeaaGA~V~i  192 (193)
                      +|||+|++|+ ++||+|||+||++|||||+|||+|||++|+   +||+|+||+|||++|++|+++||+|+|
T Consensus         1 EF~V~L~~~~-~~KI~vIK~VR~it~lgLkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA~V~l   70 (71)
T d1dd3a2           1 EFDVVLKSFG-QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL   70 (71)
T ss_dssp             SEEEEEEECT-TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEEcccC-ccchhHHHHHHHhcCCCHHHHHHHHHhcCCchHHHhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            6999999996 689999999999999999999999998885   899999999999999999999999987

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=2e-12  Score=87.69  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCcccc
Q 029444           63 VVQLAERIASLTPEERRQISLTLFKRFSLPKLQPIST   99 (193)
Q Consensus        63 V~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~~   99 (193)
                      +++|++.|.+||++|++||++.||++|||++++|+.+
T Consensus         3 ~e~iie~I~~~tv~El~ELvKalEekfGVsAaaPV~~   39 (57)
T d1dd3a1           3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAV   39 (57)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhCcccchhHHh
Confidence            6899999999999999999999999999999877654

>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2e-08  Score=65.33  Aligned_cols=36  Identities=11%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCCccc
Q 029444           63 VVQLAERIASLTPEERRQISLTLFKRFSLPKLQPIS   98 (193)
Q Consensus        63 V~~ivd~I~~LtllE~seLv~~leekfgv~~~~~~~   98 (193)
                      -++|++.|++||++|+.||++.+||||||++.++++
T Consensus         3 ke~Ileaia~MSVmdvveLi~amEEKFGVsaaa~va   38 (47)
T d2gyc31           3 KDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA   38 (47)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHTCTTTTHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhCcchhcccc
Confidence            478999999999999999999999999999886543

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.09  E-value=1.5e-06  Score=51.16  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 029444           62 KVVQLAERIASLTPEERRQISLTLFKRFS   90 (193)
Q Consensus        62 kV~~ivd~I~~LtllE~seLv~~leekfg   90 (193)
                      .+++|++.|..||+.|++|||+.||++||
T Consensus         2 ~~eeiv~aiekltvaelaelvk~ledkfg   30 (30)
T d1zavu1           2 TIDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence            47899999999999999999999999998

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.55  E-value=0.032  Score=36.16  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHHH
Q 029444          138 KLKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNII  180 (193)
Q Consensus       138 KI~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEeik  180 (193)
                      ++..||++|+.||.|+.+.|+.++.+-      -.-|.|.++-
T Consensus         2 ~~elvK~LR~~Tga~~~dcKkAL~e~~------gD~ekA~e~L   38 (52)
T d1aipc1           2 QMELIKKLREATGAGMMDVKRALEDAG------WDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTT------TCHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHcC------CCHHHHHHHH
Confidence            689999999999999999999877543      4455565554

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.12  Score=33.63  Aligned_cols=35  Identities=26%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHhCchhhhcCCCHHHHHHH
Q 029444          139 LKIVKEVKTFFDLGMKEAKELVEKAPVVLKQGLTKEEASNI  179 (193)
Q Consensus       139 I~VIKeVR~iT~LGLKEAK~lVEs~P~vIKe~vsKeEAEei  179 (193)
                      ...||++|+.||.|+++.|+..+..-      -.-|.|.++
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~~------gD~ekA~e~   39 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEAN------GDIELAIEN   39 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTT------TCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC------CCHHHHHHH
Confidence            47899999999999999999877543      344555544

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.26  E-value=0.17  Score=33.03  Aligned_cols=27  Identities=7%  Similarity=0.143  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHhCc
Q 029444          138 KLKIVKEVKTFFDLGMKEAKELVEKAP  164 (193)
Q Consensus       138 KI~VIKeVR~iT~LGLKEAK~lVEs~P  164 (193)
                      -..+||++|+.||.|+++.|+..+..-
T Consensus         4 s~~lvk~LRe~Tga~~~dcKkAL~e~~   30 (56)
T d1xb2b1           4 SKELLMKLRRKTGYSFINCKKALETCG   30 (56)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            357999999999999999999877553