Citrus Sinensis ID: 029452

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFACA
cccccccccccccccHHccccccHHHHcccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEEccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccc
cccHHHHHHHHHHHHHHHHHccHEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccEEEEccccEEEEEcccEEEEEEEcHHHcccccccHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcc
mmstkyhpamkfvrpvrkklkVKTVFNIlgpmlnpacvpFAVVGVYNENLVLKMANALQRFGLKRALVVHsegldemsplgpgliLDVTQEKIerfsfdpldygiprctleslqgggpaynAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEvskgapafaca
mmstkyhpamkfvrpvrkkLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEgldemsplgpGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFACA
MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGaiadalilnaaaallVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFACA
*********MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKG*******
MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKG*******
MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFACA
MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFAC*
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFACA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query193 2.2.26 [Sep-21-2011]
Q02166444 Anthranilate phosphoribos yes no 0.958 0.416 0.783 4e-75
Q254S7343 Anthranilate phosphoribos yes no 0.958 0.539 0.397 2e-38
Q57686336 Anthranilate phosphoribos yes no 0.943 0.541 0.415 1e-37
C4ZI69338 Anthranilate phosphoribos yes no 0.932 0.532 0.430 6e-37
Q1AU89342 Anthranilate phosphoribos yes no 0.958 0.540 0.438 2e-36
A7HXZ5341 Anthranilate phosphoribos yes no 0.963 0.545 0.433 3e-36
Q3ZZ15341 Anthranilate phosphoribos yes no 0.958 0.542 0.425 4e-36
Q3Z6G6341 Anthranilate phosphoribos yes no 0.958 0.542 0.425 4e-36
Q98ME4336 Anthranilate phosphoribos yes no 0.963 0.553 0.403 5e-36
A5UMC1335 Anthranilate phosphoribos yes no 0.953 0.549 0.410 1e-35
>sp|Q02166|TRPD_ARATH Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  280 bits (716), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 162/185 (87%)

Query: 1   MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
           MMS  YHPAMK V PVRKKLK+KTVFNILGPMLNPA V +AVVGVY+++LV+KMA ALQR
Sbjct: 254 MMSPMYHPAMKIVGPVRKKLKIKTVFNILGPMLNPARVSYAVVGVYHKDLVVKMAKALQR 313

Query: 61  FGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAY 120
           FG+KRALVVHS GLDEMSPLG GL+ DVT EKIE FSFDPLD+GIPRCTLE L+GGGP Y
Sbjct: 314 FGMKRALVVHSCGLDEMSPLGGGLVYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDY 373

Query: 121 NAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLW 180
           NA+VLRRVLSGE GAIAD+LILNAAAALLVS +V TLAEGV +ARE+Q SGKA+ TLD W
Sbjct: 374 NADVLRRVLSGESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSW 433

Query: 181 IEVSK 185
           I +S 
Sbjct: 434 INISN 438

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 8
>sp|Q254S7|TRPD_CHLFF Anthranilate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q57686|TRPD_METJA Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|C4ZI69|TRPD_EUBR3 Anthranilate phosphoribosyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q1AU89|TRPD_RUBXD Anthranilate phosphoribosyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|A7HXZ5|TRPD_PARL1 Anthranilate phosphoribosyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q3ZZ15|TRPD_DEHSC Anthranilate phosphoribosyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q3Z6G6|TRPD_DEHE1 Anthranilate phosphoribosyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q98ME4|TRPD_RHILO Anthranilate phosphoribosyltransferase OS=Rhizobium loti (strain MAFF303099) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|A5UMC1|TRPD_METS3 Anthranilate phosphoribosyltransferase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=trpD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
225456993 394 PREDICTED: anthranilate phosphoribosyltr 0.979 0.479 0.804 1e-83
357461927 394 Anthranilate phosphoribosyltransferase [ 0.953 0.467 0.760 4e-77
108705959 385 Anthranilate phosphoribosyltransferase, 0.953 0.477 0.733 2e-76
115450443 395 Os03g0126000 [Oryza sativa Japonica Grou 0.953 0.465 0.733 4e-76
29367397 320 putative phosphoribosylanthranilate tran 0.953 0.575 0.733 5e-76
20330741 409 Putative phosphoribosylanthranilate tran 0.953 0.449 0.733 5e-76
125542211 411 hypothetical protein OsI_09808 [Oryza sa 0.953 0.447 0.733 7e-76
413957098189 hypothetical protein ZEAMMB73_227948 [Ze 0.968 0.989 0.732 2e-75
413957096 393 blue fluorescent1 [Zea mays] 0.968 0.475 0.732 2e-75
212276106277 blue fluorescent1 [Zea mays] gi|19469054 0.968 0.675 0.732 3e-75
>gi|225456993|ref|XP_002282228.1| PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Vitis vinifera] gi|297733759|emb|CBI15006.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/189 (80%), Positives = 171/189 (90%)

Query: 1   MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
           MM+  YHPAMK V PVRKKLKVKTVFNILGPMLNPA VPFAVVGV+ E+LVLKMA ALQR
Sbjct: 201 MMAPIYHPAMKIVGPVRKKLKVKTVFNILGPMLNPARVPFAVVGVFTEDLVLKMAKALQR 260

Query: 61  FGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAY 120
           FG+KRALVVHSEGLDEMSPLGPGL+LDVT EKIE+FSFDPL++GIPRCTL+ L+GGGP Y
Sbjct: 261 FGMKRALVVHSEGLDEMSPLGPGLVLDVTPEKIEKFSFDPLEFGIPRCTLDDLRGGGPDY 320

Query: 121 NAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLW 180
           NAEVL+RVLSGE+G+IADA +LNAAAALLVS +VNTLA+GV+LARE Q SGKA+ TLDLW
Sbjct: 321 NAEVLKRVLSGEKGSIADAFVLNAAAALLVSGRVNTLADGVSLARETQESGKAIKTLDLW 380

Query: 181 IEVSKGAPA 189
           IE+S  A A
Sbjct: 381 IEISNKAKA 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357461927|ref|XP_003601245.1| Anthranilate phosphoribosyltransferase [Medicago truncatula] gi|355490293|gb|AES71496.1| Anthranilate phosphoribosyltransferase [Medicago truncatula] gi|388505804|gb|AFK40968.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|108705959|gb|ABF93754.1| Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115450443|ref|NP_001048822.1| Os03g0126000 [Oryza sativa Japonica Group] gi|108705958|gb|ABF93753.1| Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113547293|dbj|BAF10736.1| Os03g0126000 [Oryza sativa Japonica Group] gi|215768377|dbj|BAH00606.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|29367397|gb|AAO72571.1| putative phosphoribosylanthranilate transferase [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|20330741|gb|AAM19104.1|AC104427_2 Putative phosphoribosylanthranilate transferase [Oryza sativa Japonica Group] gi|125584766|gb|EAZ25430.1| hypothetical protein OsJ_09246 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125542211|gb|EAY88350.1| hypothetical protein OsI_09808 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|413957098|gb|AFW89747.1| hypothetical protein ZEAMMB73_227948 [Zea mays] Back     alignment and taxonomy information
>gi|413957096|gb|AFW89745.1| blue fluorescent1 [Zea mays] Back     alignment and taxonomy information
>gi|212276106|ref|NP_001130955.1| blue fluorescent1 [Zea mays] gi|194690548|gb|ACF79358.1| unknown [Zea mays] gi|195627282|gb|ACG35471.1| hypothetical protein [Zea mays] gi|224030999|gb|ACN34575.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
TAIR|locus:2161528444 TRP1 "tryptophan biosynthesis 0.953 0.414 0.711 4.1e-65
TIGR_CMR|DET_1483341 DET_1483 "anthranilate phospho 0.958 0.542 0.382 1e-29
TIGR_CMR|CPS_3524365 CPS_3524 "anthranilate phospho 0.922 0.487 0.386 3.4e-29
TIGR_CMR|CHY_1585340 CHY_1585 "anthranilate phospho 0.917 0.520 0.368 3.2e-26
TIGR_CMR|SO_3021347 SO_3021 "anthranilate phosphor 0.953 0.530 0.335 1.1e-25
TIGR_CMR|BA_1250341 BA_1250 "anthranilate phosphor 0.922 0.521 0.357 2e-24
UNIPROTKB|P00904531 trpD "anthranilate synthase co 0.683 0.248 0.393 2.5e-23
UNIPROTKB|Q9KST4332 trpD "Anthranilate phosphoribo 0.678 0.394 0.358 2.9e-23
TIGR_CMR|VC_1172332 VC_1172 "anthranilate phosphor 0.678 0.394 0.358 2.9e-23
TIGR_CMR|GSU_2381350 GSU_2381 "anthranilate phospho 0.891 0.491 0.352 2.6e-22
TAIR|locus:2161528 TRP1 "tryptophan biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 131/184 (71%), Positives = 147/184 (79%)

Query:     1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
             MMS  YHPAMK V PVRKKLK+KTVFNILGPMLNPA V +AVVGVY+++LV+KMA ALQR
Sbjct:   254 MMSPMYHPAMKIVGPVRKKLKIKTVFNILGPMLNPARVSYAVVGVYHKDLVVKMAKALQR 313

Query:    61 FGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAY 120
             FG+KRALVVHS GLDEMSPLG GL+ DVT EKIE FSFDPLD+GIPRCTLE L+GGGP Y
Sbjct:   314 FGMKRALVVHSCGLDEMSPLGGGLVYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDY 373

Query:   121 NAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLW 180
             NA+VLRRVLSGE G               VS +V TLAEGV +ARE+Q SGKA+ TLD W
Sbjct:   374 NADVLRRVLSGESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSW 433

Query:   181 IEVS 184
             I +S
Sbjct:   434 INIS 437
GO:0000162 "tryptophan biosynthetic process" evidence=IEA;ISS;IMP
GO:0004048 "anthranilate phosphoribosyltransferase activity" evidence=IEA;ISS;TAS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|DET_1483 DET_1483 "anthranilate phosphoribosyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3524 CPS_3524 "anthranilate phosphoribosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1585 CHY_1585 "anthranilate phosphoribosyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3021 SO_3021 "anthranilate phosphoribosyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1250 BA_1250 "anthranilate phosphoribosyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P00904 trpD "anthranilate synthase component II" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KST4 trpD "Anthranilate phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1172 VC_1172 "anthranilate phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2381 GSU_2381 "anthranilate phosphoribosyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q02166TRPD_ARATH2, ., 4, ., 2, ., 1, 80.78370.95850.4166yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.766
4th Layer2.4.2.180.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
PLN02641343 PLN02641, PLN02641, anthranilate phosphoribosyltra 1e-119
PRK00188339 PRK00188, trpD, anthranilate phosphoribosyltransfe 1e-77
TIGR01245330 TIGR01245, trpD, anthranilate phosphoribosyltransf 2e-74
COG0547338 COG0547, TrpD, Anthranilate phosphoribosyltransfer 5e-64
pfam00591254 pfam00591, Glycos_transf_3, Glycosyl transferase f 7e-59
PRK14607534 PRK14607, PRK14607, bifunctional glutamine amidotr 1e-54
PRK09522531 PRK09522, PRK09522, bifunctional glutamine amidotr 6e-30
PRK07394342 PRK07394, PRK07394, hypothetical protein; Provisio 2e-06
COG0213 435 COG0213, DeoA, Thymidine phosphorylase [Nucleotide 7e-04
>gnl|CDD|215345 PLN02641, PLN02641, anthranilate phosphoribosyltransferase Back     alignment and domain information 
 Score =  341 bits (877), Expect = e-119
 Identities = 149/184 (80%), Positives = 162/184 (88%)

Query: 1   MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
           MM+ KYHPAMK V PVRKKLKVKTVFNILGPMLNPA VP AVVGVY+E+LV KMA ALQR
Sbjct: 150 MMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQR 209

Query: 61  FGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAY 120
           FG+KRALVVHSEGLDEMSPLGPG +L+VT EKIE FSFDPLD+GIPRCTLE L+GG P Y
Sbjct: 210 FGMKRALVVHSEGLDEMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDY 269

Query: 121 NAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLW 180
           NA+VLR VLSGE+GAIADALILNAAAALLVS    TLAEGVALARE Q SGKA+ TLD W
Sbjct: 270 NAKVLRDVLSGEKGAIADALILNAAAALLVSGLAKTLAEGVALARETQESGKAIKTLDSW 329

Query: 181 IEVS 184
           I++S
Sbjct: 330 IKIS 333

Length = 343
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216013 pfam00591, Glycos_transf_3, Glycosyl transferase family, a/b domain Back     alignment and domain information
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|168934 PRK07394, PRK07394, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223291 COG0213, DeoA, Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 193
COG0547338 TrpD Anthranilate phosphoribosyltransferase [Amino 100.0
PLN02641343 anthranilate phosphoribosyltransferase 100.0
PRK07394342 hypothetical protein; Provisional 100.0
PRK14607534 bifunctional glutamine amidotransferase/anthranila 100.0
PRK09522531 bifunctional glutamine amidotransferase/anthranila 100.0
TIGR01245330 trpD anthranilate phosphoribosyltransferase. In ma 100.0
PRK00188339 trpD anthranilate phosphoribosyltransferase; Provi 100.0
PF00591252 Glycos_transf_3: Glycosyl transferase family, a/b 100.0
KOG1438373 consensus Anthranilate phosphoribosyltransferase [ 100.0
PRK09071323 hypothetical protein; Validated 100.0
PRK08136317 glycosyl transferase family protein; Provisional 100.0
PRK06078 434 pyrimidine-nucleoside phosphorylase; Reviewed 99.92
TIGR02644405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 99.75
PRK04350490 thymidine phosphorylase; Provisional 99.75
TIGR02645493 ARCH_P_rylase putative thymidine phosphorylase. Me 98.72
PRK05820 440 deoA thymidine phosphorylase; Reviewed 98.57
TIGR03327500 AMP_phos AMP phosphorylase. This enzyme family is 98.39
TIGR02643 437 T_phosphoryl thymidine phosphorylase. Thymidine ph 97.67
COG0213 435 DeoA Thymidine phosphorylase [Nucleotide transport 97.46
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-58  Score=397.11  Aligned_cols=186  Identities=49%  Similarity=0.806  Sum_probs=182.4

Q ss_pred             CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452            1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP   79 (193)
Q Consensus         1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~   79 (193)
                      ||||.|||+|++++|+|++||+||+||+||||+||+++++||+|||||+|.++++++++.+|.++++|||| ||+||++|
T Consensus       152 lfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~~GlDE~~~  231 (338)
T COG0547         152 LFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGLEGLDEVTP  231 (338)
T ss_pred             EEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECCCCcccccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Q 029452           80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAE  159 (193)
Q Consensus        80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~  159 (193)
                      +++|.|+++++|++++|+++|+|||++++++++|+++||++|++++++||+|+.++.+|+|++|||++||++|+++|++|
T Consensus       232 ~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~~g~a~~l~e  311 (338)
T COG0547         232 TGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYAAGKAESLKE  311 (338)
T ss_pred             CCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcCccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhcC
Q 029452          160 GVALAREIQLSGKALNTLDLWIEVSKG  186 (193)
Q Consensus       160 g~~~A~e~i~sG~a~~~l~~~~~~~~~  186 (193)
                      |+++|+++|+||+|+++|++|+.++++
T Consensus       312 g~~~A~~~i~sG~a~~~l~~l~~~~~~  338 (338)
T COG0547         312 GIALALEAIDSGAALEKLEELVAFSKS  338 (338)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhcC
Confidence            999999999999999999999988763

>PLN02641 anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK07394 hypothetical protein; Provisional Back     alignment and domain information
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01245 trpD anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2 Back     alignment and domain information
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09071 hypothetical protein; Validated Back     alignment and domain information
>PRK08136 glycosyl transferase family protein; Provisional Back     alignment and domain information
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information
>PRK04350 thymidine phosphorylase; Provisional Back     alignment and domain information
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>TIGR03327 AMP_phos AMP phosphorylase Back     alignment and domain information
>TIGR02643 T_phosphoryl thymidine phosphorylase Back     alignment and domain information
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
1v8g_A329 Crystal Structure Of Anthranilate Phosphoribosyltra 1e-28
1kgz_A345 Crystal Structure Analysis Of The Anthranilate Phos 3e-27
4hkm_A346 Crystal Structure Of An Anthranilate Phosphoribosyl 2e-21
1vqu_A374 Crystal Structure Of Anthranilate Phosphoribosyltra 6e-17
1o17_A345 Anthranilate Phosphoribosyl-Transferase (Trpd) Leng 3e-16
3gbr_A345 Anthranilate Phosphoribosyl-Transferase (Trpd) Doub 4e-16
2bpq_A373 Anthranilate Phosphoribosyltransferase (Trpd) From 4e-15
3qr9_A377 Anthranilate Phosphoribosyltransferase (trpd) From 4e-15
1zvw_A378 The Crystal Structure Of Trpd (Rv2192c) From Mycoba 2e-14
>pdb|1V8G|A Chain A, Crystal Structure Of Anthranilate Phosphoribosyltransferase (Trpd) From Thermus Thermophilus Hb8 Length = 329 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 6   YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 65
           +HPAM+ V PVR +L V+TVFN+LGP+ NPA     V+GV++   +  MA AL+R G  R
Sbjct: 153 FHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-AR 211
Query: 66  ALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVL 125
            LVVH EG DE+  LG   +++V +     ++  P + G+ R  LE+L+GGGP  NA + 
Sbjct: 212 GLVVHGEGADELV-LGENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALA 267
Query: 126 RRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 181
           RR+L G E+G                + K  +L EGVALARE+  SG+A   L+ ++
Sbjct: 268 RRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYV 324
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (current Name, Pectobacterium Carotovorum) Length = 345 Back     alignment and structure
>pdb|4HKM|A Chain A, Crystal Structure Of An Anthranilate Phosphoribosyltransferase (Target Id Nysgrc-016600) From Xanthomonas Campestris Length = 346 Back     alignment and structure
>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate Phosphoribosyltransferase 2 (17130499) From Nostoc Sp. At 1.85 A Resolution Length = 374 Back     alignment and structure
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Length = 345 Back     alignment and structure
>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double Mutant D83g F149s From S. Solfataricus Length = 345 Back     alignment and structure
>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From Mycobacterium Tuberculosis (Apo Structure) Length = 373 Back     alignment and structure
>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From Mycobacterium Tuberculosis (apo Structure) Length = 377 Back     alignment and structure
>pdb|1ZVW|A Chain A, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium Tuberculosis In Complex With Prpp And Magnesium Length = 378 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
1o17_A345 Anthranilate PRT, anthranilate phosphoribosyltrans 3e-80
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 2e-78
3qr9_A377 Anthranilate phosphoribosyltransferase; anthranili 9e-78
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 6e-76
2elc_A329 Trp D, anthranilate phosphoribosyltransferase; str 1e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Length = 345 Back     alignment and structure
 Score =  241 bits (618), Expect = 3e-80
 Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 3/186 (1%)

Query: 1   MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
           + +  YHPAMK V  VRK L ++T+FNILGP+ NPA   + ++GV++++ +  ++ +   
Sbjct: 148 LFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYE 207

Query: 61  FGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPA 119
               + ++V+ E G+DE+SP+G   +  V++  IE    +  D+GI    +E L      
Sbjct: 208 LDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAE 267

Query: 120 YNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDL 179
            +A  + R   G+   +A+ + +N A AL    +V    EG   A  +    K+L+ L+ 
Sbjct: 268 DSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLI--EKSLDKLNE 325

Query: 180 WIEVSK 185
            I ++ 
Sbjct: 326 IISMNG 331
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Length = 345 Back     alignment and structure
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, magnesium binding, phosphoribosyl pyrophosphate transferase; 1.87A {Mycobacterium tuberculosis} PDB: 1zvw_A* 2bpq_A Length = 377 Back     alignment and structure
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Length = 374 Back     alignment and structure
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A Length = 329 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
4hkm_A346 Anthranilate phosphoribosyltransferase; structural 100.0
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 100.0
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 100.0
3r88_A377 Anthranilate phosphoribosyltransferase; anthranili 100.0
2elc_A329 Trp D, anthranilate phosphoribosyltransferase; str 100.0
1o17_A345 Anthranilate PRT, anthranilate phosphoribosyltrans 100.0
3h5q_A 436 PYNP, pyrimidine-nucleoside phosphorylase; structu 99.96
2dsj_A 423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 99.95
1brw_A 433 PYNP, protein (pyrimidine nucleoside phosphorylase 99.94
1uou_A 474 Thymidine phosphorylase; transferase, glycosyltran 99.94
2tpt_A 440 Thymidine phosphorylase; transferase, salvage path 99.93
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV} Back     alignment and structure
Probab=100.00  E-value=5.3e-54  Score=374.64  Aligned_cols=188  Identities=36%  Similarity=0.574  Sum_probs=175.4

Q ss_pred             CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452            1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP   79 (193)
Q Consensus         1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~   79 (193)
                      +|||.|||+|+++.++|++||+||+||+||||+||+++++|++||||++|.++|+++++.+|.++++|||| ||+||+|+
T Consensus       155 l~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~g~~G~dEis~  234 (346)
T 4hkm_A          155 MYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSL  234 (346)
T ss_dssp             ECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEEETTTBSSCCS
T ss_pred             hchhhhChhHHHHhhheeccCCCchhhhcccccCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEecCCCchhhhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Q 029452           80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAE  159 (193)
Q Consensus        80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~  159 (193)
                      .++|.|+++++|++.+++++|+|||++..+++++.++|+++|+++++++|+|+.++.+|.|++|||++||++|+++|++|
T Consensus       235 ~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~~~g~a~sl~e  314 (346)
T 4hkm_A          235 GAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVAGVADSIAD  314 (346)
T ss_dssp             SSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHTTSSSSHHH
T ss_pred             ccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 029452          160 GVALAREIQLSGKALNTLDLWIEVSKGAP  188 (193)
Q Consensus       160 g~~~A~e~i~sG~a~~~l~~~~~~~~~~~  188 (193)
                      |+++|+++|+||+|+++|++|++++|+..
T Consensus       315 g~~~A~~~l~sG~A~~~l~~~i~~s~~~~  343 (346)
T 4hkm_A          315 GIVRARQVLADGSARACLDAYVAFTQQAT  343 (346)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998754
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Back     alignment and structure
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Back     alignment and structure
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A Back     alignment and structure
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A Back     alignment and structure
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Back     alignment and structure
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Back     alignment and structure
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 193
d1o17a2273 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltra 9e-36
d2elca2264 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltra 1e-29
d1khda2264 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltra 7e-25
d1uoua2273 c.27.1.1 (A:101-373) Thymidine phosphorylase {Huma 5e-23
d1brwa2260 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphor 1e-21
d2tpta2265 c.27.1.1 (A:71-335) Thymidine phosphorylase {Esche 5e-19
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 273 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  124 bits (311), Expect = 9e-36
 Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 3/185 (1%)

Query: 1   MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 60
           + +  YHPAMK V  VRK L ++T+FNILGP+ NPA   + ++GV++++ +  ++ +   
Sbjct: 78  LFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYE 137

Query: 61  FGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPA 119
               + ++V+ E  +DE+SP+G   +  V++  IE    +  D+GI    +E L      
Sbjct: 138 LDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAE 197

Query: 120 YNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDL 179
            +A  + R   G+   +A+ + +N A AL    +V    EG   A    L  K+L+ L+ 
Sbjct: 198 DSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADH--LIEKSLDKLNE 255

Query: 180 WIEVS 184
            I ++
Sbjct: 256 IISMN 260
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Length = 264 Back     information, alignment and structure
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Length = 264 Back     information, alignment and structure
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 260 Back     information, alignment and structure
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
d1o17a2273 Anthranilate phosphoribosyltransferase (TrpD) {Arc 100.0
d1khda2264 Anthranilate phosphoribosyltransferase (TrpD) {Pec 100.0
d2elca2264 Anthranilate phosphoribosyltransferase (TrpD) {The 100.0
d1uoua2273 Thymidine phosphorylase {Human (Homo sapiens) [Tax 99.97
d1brwa2260 Pyrimidine nucleoside phosphorylase {Bacillus stea 99.97
d2tpta2265 Thymidine phosphorylase {Escherichia coli [TaxId: 99.96
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.5e-59  Score=395.75  Aligned_cols=185  Identities=29%  Similarity=0.501  Sum_probs=180.4

Q ss_pred             CCCCccCHHhhccHHHhhhCCCCCchHhhhhccCCCCCCceEEeecChhHHHHHHHHHHHcCCceEEEEee-CCccccCC
Q 029452            1 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP   79 (193)
Q Consensus         1 l~ap~~~P~~~~l~~~R~~lG~RT~fN~lgpLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~a~vv~G-eG~dE~s~   79 (193)
                      ||||.|||+|++++++||+||+||+||+||||+||+++++||+||||++|+++|+++++.+|.++++|||| ||+||+|+
T Consensus        78 lfAp~~hPamk~v~~vRk~Lg~rTiFN~lgPL~NPa~~~~qliGv~~~~~~~~~a~~l~~lg~~~a~vv~G~dG~DEis~  157 (273)
T d1o17a2          78 LFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSP  157 (273)
T ss_dssp             EEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTBSSCCS
T ss_pred             eeccccChHHHHHHHHHHHcCCCchhhhhhhccCCcCcceeeeccccHHHHHHHHHHHHhhcccceEEecCCccccchhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             CCCeEEEEEeCCeEEEEEECCCCCCCCCCCCCCcCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Q 029452           80 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAE  159 (193)
Q Consensus        80 ~~~t~v~~~~~g~i~~~~~~p~~~Gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~~~v~lNaA~~L~~~g~~~~i~~  159 (193)
                      +++|+|+++++|++++++|+|+|||+++.++++|+++|+++|+++++++|+|++++++|+|++|||++||++|+++|++|
T Consensus       158 ~g~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~i~~il~G~~~~~~d~V~lNAA~aL~~~g~~~sl~e  237 (273)
T d1o17a2         158 IGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFRE  237 (273)
T ss_dssp             SSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSSSSHHH
T ss_pred             cccceeeecccccceeeeeehhhhcccccccccccccCchHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHcCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 029452          160 GVALAREIQLSGKALNTLDLWIEVSKGA  187 (193)
Q Consensus       160 g~~~A~e~i~sG~a~~~l~~~~~~~~~~  187 (193)
                      |+++|+++|+|  +++||++|+++++..
T Consensus       238 g~~~A~e~I~s--a~~kL~~li~~s~~l  263 (273)
T d1o17a2         238 GYEYADHLIEK--SLDKLNEIISMNGDV  263 (273)
T ss_dssp             HHHHHHHHHTT--HHHHHHHHHHHSBCH
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            99999999996  678999999999864
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure