Citrus Sinensis ID: 029470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccEEEEEcccccccccccccccccEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccccccccccccccccccccEEccccccEEEccccHHHHccEEEEEEccccccccccccccEEEEEccccccccccccccccccccHHHccccEEEEccHHHHHHHHHHcccEEEEccccccccccccccccccccccccHHHHHHHcccccEEEcccccccccHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAQSLQRIWshgrtvrgtvcpfsrafsadalvevkpgeigmvsgipeehlRRRVViytpartatqqgsgklgrWKINFMStqkwenplmgwtstgdpyanvgdaglsfdSKEAAREFAERHGWEYVAAGDIFRTFCAItishtttpltphpkkekRKKEMYETLvrkphrpllkvksyadnfkwkgppktdgn
Flexible Loop (DISEMBL)
MAQSLQriwshgrtvrgtvcpFSRAFSADAlvevkpgeigmvsgipeehlRRRVVIytpartatqqgsgklgrwKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITIShtttpltphpkkekrKKEMYetlvrkphrpllkvksyadnfkwkgppktdgn
Low Complexity Region (SEG)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAitishtttpltphpKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Disordered region (IsUnstruct)
******RIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTT******************************V**Y***************
Disordered Region (DISOPRED)
****************************************MVSGIPEEHLRRRVVIYTPART******GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLT*********************************************
Disordered Region (DISEMBL)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTT**************MYETLVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Disordered Region (DISPRO)
****************************DALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGPPKTDGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.720	0.902	0.569	4e-50
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	no	0.512	0.565	0.416	3e-19
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.440	0.485	0.460	1e-18
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.440	0.485	0.460	1e-18
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.440	0.485	0.460	2e-18
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.440	0.485	0.460	2e-18
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.440	0.485	0.460	2e-18
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.440	0.485	0.449	2e-18
Q02375	175	NADH dehydrogenase [ubiqu	yes	no	0.440	0.485	0.449	2e-18
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.440	0.485	0.449	1e-17

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  197 bits (501), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 122/181 (67%), Gaps = 42/181 (23%)

Query: 13  RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
           RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9   RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query: 69  GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAA 128
           GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y   
Sbjct: 69  GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDY--- 125

Query: 129 GDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGPP 188
                                               V+KP+ PLLKVKSY+DNFKWKG P
Sbjct: 126 -----------------------------------KVKKPNTPLLKVKSYSDNFKWKGNP 150

Query: 189 K 189
           +
Sbjct: 151 Q 151

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 9/108 (8%)

Query: 23  SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
           ++  + D  ++V P     ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + 
Sbjct: 50  TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104

Query: 82  QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAG 129
           ++WENPLMGW ST DP +N+    L+F +KE A  FAE+HGW Y   G
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEG 149

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW Y
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW Y
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW Y
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW Y
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW Y
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW+ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW +
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSF 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+F +KE A  FAE++GW Y
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 4/89 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEY 125
           P +N+    L+  +KE A  FAE++GW Y
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSY 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.585	0.733	0.717	2.3e-52
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.569	0.654	0.403	2.1e-23
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	0.440	0.485	0.460	3.7e-22
FB|FBgn0031021	183	CG12203 [Drosophila melanogast	0.440	0.464	0.460	2.5e-21
WB|WBGene00003061	176	lpd-5 [Caenorhabditis elegans	0.481	0.528	0.421	6.6e-21
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.440	0.732	0.471	2.5e-19
RGD|1594380	175	Ndufs4 "NADH dehydrogenase (ub	0.461	0.508	0.451	2.5e-19
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	0.440	0.485	0.460	1.1e-18
UNIPROTKB|Q0MQH0	175	NDUFS4 "NADH dehydrogenase [ub	0.440	0.485	0.460	1.1e-18
MGI|MGI:1343135	175	Ndufs4 "NADH dehydrogenase (ub	0.440	0.485	0.460	1.4e-18

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 84/117 (71%), Positives = 99/117 (84%)

Query:    13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
             RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct:     9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query:    69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEY 125
             GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y
Sbjct:    69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDY 125

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 46/114 (40%), Positives = 72/114 (63%)

Query:    13 RTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKL 71
             R+V  + C  +    +  +   +  +I  ++G+PEEH++ R+V I+ PAR A Q G    
Sbjct:    28 RSVSTSGCRLAEGQGSQLITVDEKLDISTLTGVPEEHIKTRKVRIFVPARNAMQSGVKNT 87

Query:    72 GRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEY 125
              +WKI+F + ++WENPLMGW+ST DP +N+    L+F +KE A  FAE++GW Y
Sbjct:    88 HKWKIDFDTRERWENPLMGWSSTADPLSNMV---LTFSTKEDAIAFAEKNGWSY 138

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARDNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSTKEDAAAFAEKNGWSY 145

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

FB|FBgn0031021 CG12203 [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 41/89 (46%), Positives = 58/89 (65%)

Query:    42 VSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN 100
             +SG+PEEH+R RRV I+ P + A Q G+  +  W+I F + ++WENPLMGW S+GDP +N
Sbjct:    71 ISGVPEEHIRERRVRIHIPPKNAMQSGTDNVNTWQIEFDNRERWENPLMGWASSGDPLSN 130

Query:   101 VGDAGLSFDSKEAAREFAERHGWEYVAAG 129
             +    + F S E A  F ER+GW +   G
Sbjct:   131 MN---VQFGSPEEAITFCERNGWRWYVDG 156

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0022900 "electron transport chain" evidence=IEA

WB|WBGene00003061 lpd-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 40/95 (42%), Positives = 53/95 (55%)

Query:    32 VEVKPGEIGMVSGIPEEHLRRRVV-IYTPARTATQQGSGKLGRWKINFMSTQKWENPLMG 90
             V+V   E   + G+P +H   R   I+ PAR  TQ   G    W I   + Q+WENPLMG
Sbjct:    53 VKVSSDETMDIGGVPLDHQDARTARIFRPARETTQSAWGNTKSWTIELDNRQRWENPLMG 112

Query:    91 WTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEY 125
             W+ T DP +NVG   L F +KE A  F E++ WE+
Sbjct:   113 WSGTADPLSNVG-MDLKFATKEDAIAFCEKNRWEF 146

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 42/89 (47%), Positives = 61/89 (68%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:     1 DISTLTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRERWENPLMGWASTAD 60

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:    61 PLSNMV---LTFSTKEDAIAFAEKNGWNY 86

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1594380 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 42/93 (45%), Positives = 61/93 (65%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             ++  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DVTPLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVAAG 129
             P +N+    L+F +KE A  FAE+HGW Y   G
Sbjct:   120 PLSNMV---LTFSAKEDAVAFAEKHGWSYDVEG 149

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0045333 "cellular respiration" evidence=IEA;ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSY 145

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q0MQH0 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSY 145

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

MGI|MGI:1343135 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Mus musculus (taxid:10090)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSAKEDAIAFAEKNGWSY 145

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0045271 "respiratory chain complex I" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0051591 "response to cAMP" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJW4	NDUS4_ARATH	No assigned EC number	0.5690	0.7202	0.9025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	3e-35

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  119 bits (299), Expect = 3e-35
 Identities = 50/138 (36%), Positives = 64/138 (46%), Gaps = 40/138 (28%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R   IY PAR A Q G  +  +W + F  + +WENPLMGWTSTGDP +N  +  L+F +K
Sbjct: 1   RTARIYRPARNAMQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQME--LTFPTK 58

Query: 112 EAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRP 171
           EAA  FAER GWEY                                       V +P+ P
Sbjct: 59  EAAIAFAERQGWEY--------------------------------------DVEEPNAP 80

Query: 172 LLKVKSYADNFKWKGPPK 189
             K K+Y+DNF W    +
Sbjct: 81  KAKPKAYSDNFSWNRRTR 98

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	100.0
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=100.00  E-value=7.9e-53  Score=346.54  Aligned_cols=132  Identities=59%  Similarity=1.081  Sum_probs=124.2

Q ss_pred             CcccccCccc-ccc--cCCCccccccCCccccc-cceEEEecCCCCCCCCCCCCCCCcEEEcCCCCCCcCCCcCccCCCC
Q 029470           21 PFSRAFSADA-LVE--VKPGEIGMVSGIPEEHL-RRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD   96 (193)
Q Consensus        21 pl~r~Fs~Da-~~~--~~~ge~~~vSGiPee~~-~RrVrIY~PaK~AmQSG~~~t~~W~LeFe~~~rwenPLMGWTSS~D   96 (193)
                      -|+++|+.|+ ++|  .+-++++.|+|+|+||+ .|+||||+|||++||||.+|+++|+|||+.+.+||||||||+|++|
T Consensus        41 rla~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaD  120 (178)
T KOG3389|consen   41 RLARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTAD  120 (178)
T ss_pred             cccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCC
Confidence            3688999999 555  46788999999999999 5999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCceeeeCCHHHHHHHHHHcCCeeEEcccccccceeeeccccCCCCCCCChhhhhhhhhcccccccCCCCCCCcc
Q 029470           97 PYANVGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVK  176 (193)
Q Consensus        97 plsqV~~~~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~~~~~~~~~~~~~~~~v~~p~~~~~~~k  176 (193)
                      |++||+ +.|.|+|+|||++|||||||+|.                                      |.+||.|++|+|
T Consensus       121 PlsNvg-m~L~F~tkEdA~sFaEkngW~yd--------------------------------------veep~~pk~K~K  161 (178)
T KOG3389|consen  121 PLSNVG-MALAFDTKEDAKSFAEKNGWDYD--------------------------------------VEEPNTPKLKVK  161 (178)
T ss_pred             cccccc-eeeeeccHHHHHHHHHHcCCccc--------------------------------------ccCCCCCccccc
Confidence            999996 69999999999999999999999                                      999999999999


Q ss_pred             cccccCCCCCCCCCC
Q 029470          177 SYADNFKWKGPPKTD  191 (193)
Q Consensus       177 sya~nf~~~~~~~~~  191 (193)
                      ||+|||+|||.+..+
T Consensus       162 sYg~NFsWn~rtr~~  176 (178)
T KOG3389|consen  162 SYGDNFSWNGRTRPE  176 (178)
T ss_pred             cccccccccCCCCCC
Confidence            999999999988644

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=2.3e-48  Score=299.31  Aligned_cols=96  Identities=49%  Similarity=0.987  Sum_probs=60.6

Q ss_pred             ceEEEecCCCCCCCCCCCCCCCcEEEcCCCCCCcCCCcCccCCCCccCC-cCCceeeeCCHHHHHHHHHHcCCeeEEccc
Q 029470           52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN-VGDAGLSFDSKEAAREFAERHGWEYVAAGD  130 (193)
Q Consensus        52 RrVrIY~PaK~AmQSG~~~t~~W~LeFe~~~rwenPLMGWTSS~Dplsq-V~~~~L~F~SkE~AIaYAer~Gw~Y~V~~~  130 (193)
                      |+||||+|+|+|||||.+++++|+|||+..++|+|||||||||+||++| |   +|+|+|+|+||+|||+|||+|+    
T Consensus         1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~----   73 (101)
T PF04800_consen    1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYE----   73 (101)
T ss_dssp             -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEE----
T ss_pred             CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEE----
Confidence            6899999999999999999999999999889999999999999999998 7   9999999999999999999999    


Q ss_pred             ccccceeeeccccCCCCCCCChhhhhhhhhcccccccCCCCCCCcccccccCCCCCCC
Q 029470          131 IFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGPP  188 (193)
Q Consensus       131 ~~~~~~~~~~sh~~~p~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ksya~nf~~~~~~  188 (193)
                                                        |.+|+.+.+++|||+|||+|++..
T Consensus        74 ----------------------------------V~~p~~r~~~~ksY~dNF~~~r~~   97 (101)
T PF04800_consen   74 ----------------------------------VEEPKKRKRRPKSYADNFSWNRRT   97 (101)
T ss_dssp             ----------------------------------EE-STT------------------
T ss_pred             ----------------------------------EeCCCCCcCCcccHHHhCCcCCCC
Confidence                                              999999999999999999999753

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		1e-07
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		6e-07

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 53  RVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    V    LSF ++
Sbjct: 13  RARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTR 69
Query: 112 EAAREFAERHGWEYVAAGDIFRTF 135
           E A  +A  H  +Y    D  RT 
Sbjct: 70  ELAIAYAVAHKIDYTVLQDNPRTI 93

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 56  IYTPARTATQQGSGKLGRWKINF-MSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAA 114
           IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F+++E A
Sbjct: 8   IYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQA 64
Query: 115 REFAERHGWEY 125
             +A+R G EY
Sbjct: 65  EAYAQRKGIEY 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2lju_A	108	Putative oxidoreductase; structural genomics, seat	8e-32
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	8e-30

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score =  110 bits (276), Expect = 8e-32
 Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 43/145 (29%)

Query: 43  SGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYAN 100
            G  +E +   R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    
Sbjct: 2   PGSMQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQ 61

Query: 101 VGDAGLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEM 160
           V    LSF ++E A  +A  H  +Y                                   
Sbjct: 62  V---CLSFTTRELAIAYAVAHKIDYT---------------------------------- 84

Query: 161 YETLVRKPHRPLLKVKSYADNFKWK 185
               V + +   +  KSYADNF   
Sbjct: 85  ----VLQDNPRTIVPKSYADNFTKP 105

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score =  105 bits (263), Expect = 8e-30
 Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 43/144 (29%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDS 110
               IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F++
Sbjct: 4   MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFET 60

Query: 111 KEAAREFAERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHR 170
           +E A  +A+R G EY                                       V  P  
Sbjct: 61  QEQAEAYAQRKGIEYR--------------------------------------VILPKE 82

Query: 171 PLLKVKSYADNFKWKGP-PKTDGN 193
              KV SY DNF++    P T G+
Sbjct: 83  ATRKVVSYTDNFRFNRTQPWTHGS 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	83.02
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	82.35

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=6.8e-50  Score=310.14  Aligned_cols=104  Identities=35%  Similarity=0.582  Sum_probs=96.8

Q ss_pred             ccccCCccccccceEEEecCCCCCCCCCCCCCCCcEEEcCCC-CCCcCCCcCccCCCCccCCcCCceeeeCCHHHHHHHH
Q 029470           40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA  118 (193)
Q Consensus        40 ~~vSGiPee~~~RrVrIY~PaK~AmQSG~~~t~~W~LeFe~~-~rwenPLMGWTSS~DplsqV~~~~L~F~SkE~AIaYA  118 (193)
                      |.+.|.|+.   ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+||
T Consensus         3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA   76 (108)
T 2lju_A            3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA   76 (108)
T ss_dssp             --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred             cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence            455667766   789999999999999999999999999996 59999999999999999998   99999999999999


Q ss_pred             HHcCCeeEEcccccccceeeeccccCCCCCCCChhhhhhhhhcccccccCCCCCCCcccccccCCCCCC
Q 029470          119 ERHGWEYVAAGDIFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGP  187 (193)
Q Consensus       119 er~Gw~Y~V~~~~~~~~~~~~~sh~~~p~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ksya~nf~~~~~  187 (193)
                      |+|||+|+                                      |.+|+.+.+++|+|||||+|++.
T Consensus        77 ek~G~~y~--------------------------------------V~ep~~~~~r~ksYadNF~~~r~  107 (108)
T 2lju_A           77 VAHKIDYT--------------------------------------VLQDNPRTIVPKSYADNFTKPRD  107 (108)
T ss_dssp             HHTTCEEE--------------------------------------EECSSCCCCCCCCCCCCCCCCCC
T ss_pred             HHcCCEEE--------------------------------------EecCCcccCCcCchHHHCCccCC
Confidence            99999999                                      99999999999999999999874

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=5.7e-49  Score=304.24  Aligned_cols=95  Identities=38%  Similarity=0.654  Sum_probs=77.1

Q ss_pred             ceEEEecCCCCCCCCCCCCCCCcEEEcCCC-CCCcCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeeEEccc
Q 029470           52 RRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVAAGD  130 (193)
Q Consensus        52 RrVrIY~PaK~AmQSG~~~t~~W~LeFe~~-~rwenPLMGWTSS~DplsqV~~~~L~F~SkE~AIaYAer~Gw~Y~V~~~  130 (193)
                      ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+|||+|||+|+    
T Consensus         4 m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~----   76 (106)
T 2jya_A            4 MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYR----   76 (106)
T ss_dssp             CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEE----
T ss_pred             cEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEE----
Confidence            689999999999999999999999999996 79999999999999999998   9999999999999999999999    


Q ss_pred             ccccceeeeccccCCCCCCCChhhhhhhhhcccccccCCCCCCCcccccccCCCCCC
Q 029470          131 IFRTFCAITISHTTTPLTPHPKKEKRKKEMYETLVRKPHRPLLKVKSYADNFKWKGP  187 (193)
Q Consensus       131 ~~~~~~~~~~sh~~~p~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ksya~nf~~~~~  187 (193)
                                                        |.+|+.+.+++|||||||+|+..
T Consensus        77 ----------------------------------V~ep~~~~~r~ksYadNF~~~r~   99 (106)
T 2jya_A           77 ----------------------------------VILPKEATRKVVSYTDNFRFNRT   99 (106)
T ss_dssp             ----------------------------------ECCCTTC----------------
T ss_pred             ----------------------------------EeCCCcCcCCcCchHHhCCcCCC
Confidence                                              99999999999999999999864

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=83.02  E-value=1  Score=39.43  Aligned_cols=59  Identities=22%  Similarity=0.248  Sum_probs=37.3

Q ss_pred             eeeeCCHHHHHHHHHHcCCeeEEcccccccceee-eccccCCCCCCCChh-------hhhhhhhcccccc
Q 029470          105 GLSFDSKEAAREFAERHGWEYVAAGDIFRTFCAI-TISHTTTPLTPHPKK-------EKRKKEMYETLVR  166 (193)
Q Consensus       105 ~L~F~SkE~AIaYAer~Gw~Y~V~~~~~~~~~~~-~~sh~~~p~~~~~~~-------~~~~~~~~~~~v~  166 (193)
                      .|.|+|.|+|++||+.+||.+. .++  +..|+. ..--.++++++.+|+       +|+++--|+..|.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~-~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~ve~K~~~~~~~~~i~  299 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII-NGD--AADLKTLQHYSHKLSETQPLKKTYLTCLERRLQKTTYKGLIN  299 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE-TTT--EECGGGCCCSSSSCTTSCCCCCCCCHHHHHHHHTSCHHHHHT
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe-CCC--CchHHhhcchhccccccCCCcchhHHHHHHHHcCCcHHHHHh
Confidence            4999999999999999999998 222  223322 111245677665543       3555555555443

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=82.35  E-value=0.67  Score=38.22  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=20.6

Q ss_pred             eeeeCCHHHHHHHHHHcCCeeE
Q 029470          105 GLSFDSKEAAREFAERHGWEYV  126 (193)
Q Consensus       105 ~L~F~SkE~AIaYAer~Gw~Y~  126 (193)
                      .|.|+|.++++.||+++||...
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i~  220 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDIR  220 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEEe
Confidence            5999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	82.57

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.57  E-value=0.24  Score=33.99  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             eeeCCHHHHHHHHHHcCCeeE
Q 029470          106 LSFDSKEAAREFAERHGWEYV  126 (193)
Q Consensus       106 L~F~SkE~AIaYAer~Gw~Y~  126 (193)
                      |.|.||+|=++||++||++|.
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~  183 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYK  183 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCC
Confidence            456799999999999999998