Citrus Sinensis ID: 029473
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 193 | ||||||
| 449443434 | 593 | PREDICTED: putative phagocytic receptor | 1.0 | 0.325 | 0.730 | 5e-78 | |
| 449492826 | 409 | PREDICTED: putative phagocytic receptor | 1.0 | 0.471 | 0.730 | 4e-77 | |
| 296084915 | 636 | unnamed protein product [Vitis vinifera] | 1.0 | 0.303 | 0.709 | 2e-75 | |
| 225464956 | 608 | PREDICTED: putative phagocytic receptor | 1.0 | 0.317 | 0.709 | 3e-75 | |
| 147789820 | 920 | hypothetical protein VITISV_004804 [Viti | 1.0 | 0.209 | 0.683 | 6e-73 | |
| 224132390 | 586 | predicted protein [Populus trichocarpa] | 0.922 | 0.303 | 0.719 | 4e-70 | |
| 357471659 | 589 | Transmembrane 9 superfamily member [Medi | 1.0 | 0.327 | 0.642 | 9e-68 | |
| 356544724 | 589 | PREDICTED: putative phagocytic receptor | 1.0 | 0.327 | 0.642 | 5e-67 | |
| 224079716 | 592 | predicted protein [Populus trichocarpa] | 1.0 | 0.326 | 0.541 | 2e-55 | |
| 145323800 | 589 | endomembrane protein 70-like protein [Ar | 1.0 | 0.327 | 0.551 | 2e-55 |
| >gi|449443434|ref|XP_004139482.1| PREDICTED: putative phagocytic receptor 1b-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/193 (73%), Positives = 162/193 (83%)
Query: 1 MVIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREILPLPWYQKSPCQMFIVGL 60
+VI+ IY ++PLL GG IG+ FRSEFQAP A R PREI PL W++K PCQMFI GL
Sbjct: 401 IVILLIYFFISLPLLVFGGIIGHRFRSEFQAPCATKRNPREIPPLAWFRKLPCQMFISGL 460
Query: 61 LSFSIIALELHHLYASLWGYKIFTLPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWW 120
LSFS + LELHHLYAS+WG+KIFTLP ILF+ FIIL++LTAILS+GLTYIQLSVEDH+WW
Sbjct: 461 LSFSAVVLELHHLYASMWGFKIFTLPSILFITFIILVILTAILSVGLTYIQLSVEDHQWW 520
Query: 121 WRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNVAMCYAFFLILGSVSFRASM 180
WRSVF GGSTAIFMF Y IYFY RSNM+GFLQL FF+GYN +CYAFFL+LG +SFR S+
Sbjct: 521 WRSVFSGGSTAIFMFGYCIYFYARSNMNGFLQLCFFVGYNACICYAFFLMLGVISFRVSL 580
Query: 181 IFVRRIYRVVKSE 193
IFVRRIY VKSE
Sbjct: 581 IFVRRIYDAVKSE 593
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449492826|ref|XP_004159113.1| PREDICTED: putative phagocytic receptor 1b-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|296084915|emb|CBI28324.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225464956|ref|XP_002274254.1| PREDICTED: putative phagocytic receptor 1b-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147789820|emb|CAN67239.1| hypothetical protein VITISV_004804 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224132390|ref|XP_002328257.1| predicted protein [Populus trichocarpa] gi|222837772|gb|EEE76137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357471659|ref|XP_003606114.1| Transmembrane 9 superfamily member [Medicago truncatula] gi|355507169|gb|AES88311.1| Transmembrane 9 superfamily member [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356544724|ref|XP_003540797.1| PREDICTED: putative phagocytic receptor 1b-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224079716|ref|XP_002305925.1| predicted protein [Populus trichocarpa] gi|222848889|gb|EEE86436.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|145323800|ref|NP_001077489.1| endomembrane protein 70-like protein [Arabidopsis thaliana] gi|332190159|gb|AEE28280.1| endomembrane protein 70-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 193 | ||||||
| TAIR|locus:2201806 | 589 | AT1G08350 [Arabidopsis thalian | 1.0 | 0.327 | 0.525 | 4.9e-53 | |
| TAIR|locus:2041160 | 592 | AT2G01970 "AT2G01970" [Arabido | 1.0 | 0.326 | 0.505 | 3.5e-52 | |
| TAIR|locus:2006872 | 592 | AT1G14670 "AT1G14670" [Arabido | 1.0 | 0.326 | 0.5 | 7.2e-52 | |
| TAIR|locus:2169100 | 593 | AT5G37310 [Arabidopsis thalian | 1.0 | 0.325 | 0.489 | 1.7e-50 | |
| DICTYBASE|DDB_G0277273 | 587 | phg1B "TM9 protein B" [Dictyos | 0.989 | 0.325 | 0.416 | 3.9e-44 | |
| UNIPROTKB|G3V1B9 | 519 | TM9SF1 "Transmembrane 9 superf | 1.0 | 0.371 | 0.412 | 4.3e-38 | |
| UNIPROTKB|O15321 | 606 | TM9SF1 "Transmembrane 9 superf | 1.0 | 0.318 | 0.412 | 6.7e-38 | |
| MGI|MGI:1921390 | 606 | Tm9sf1 "transmembrane 9 superf | 1.0 | 0.318 | 0.412 | 6.7e-38 | |
| UNIPROTKB|A4IFE9 | 606 | TM9SF1 "Transmembrane 9 superf | 1.0 | 0.318 | 0.412 | 8.9e-38 | |
| UNIPROTKB|F1MCZ2 | 606 | TM9SF1 "Transmembrane 9 superf | 1.0 | 0.318 | 0.412 | 8.9e-38 |
| TAIR|locus:2201806 AT1G08350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 102/194 (52%), Positives = 134/194 (69%)
Query: 1 MVIVFIYMLFAVPLLALGGRIGYWFRS-EFQAPSALNRYPREILPLPWYQKSPCQMFIVG 59
++I+ I+ L +P L LGG +G F EFQ PSA+ R PREI P WY++ Q+F+ G
Sbjct: 396 VIIILIFTLLNIPFLMLGGVLGNRFGLLEFQPPSAVKRNPREIPPQNWYRRKLYQVFLGG 455
Query: 60 LLSFSIIALELHHLYASLWGYKIFTLPGXXXXXXXXXXXXTAILSIGLTYIQLSVEDHEW 119
+ FS + LE H LYASLWG+KI+T PG ++ + I LTYIQLS EDHEW
Sbjct: 456 FVPFSAVVLEWHQLYASLWGFKIYTSPGIMLFTFIVLIFLSSSVGIILTYIQLSGEDHEW 515
Query: 120 WWRSVFRGGSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNVAMCYAFFLILGSVSFRAS 179
WWRS+ GG TA+FM+ Y + FY RS+M+GFLQLSF+LGY +CYA FL+LG++SF AS
Sbjct: 516 WWRSILCGGFTAVFMYGYGVLFYLRSDMTGFLQLSFYLGYTALLCYALFLVLGTISFLAS 575
Query: 180 MIFVRRIYRVVKSE 193
++F+R IYR VK E
Sbjct: 576 LMFIRHIYRSVKLE 589
|
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| TAIR|locus:2041160 AT2G01970 "AT2G01970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2006872 AT1G14670 "AT1G14670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169100 AT5G37310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0277273 phg1B "TM9 protein B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3V1B9 TM9SF1 "Transmembrane 9 superfamily member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O15321 TM9SF1 "Transmembrane 9 superfamily member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1921390 Tm9sf1 "transmembrane 9 superfamily member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4IFE9 TM9SF1 "Transmembrane 9 superfamily member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MCZ2 TM9SF1 "Transmembrane 9 superfamily member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 193 | |||
| pfam02990 | 518 | pfam02990, EMP70, Endomembrane protein 70 | 5e-49 |
| >gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70 | Back alignment and domain information |
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Score = 165 bits (421), Expect = 5e-49
Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 2 VIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREILPLPWYQKSPCQMFIVGLL 61
++ ++ L +VPL LGG +G+ R+ Q P N+ PR+I PWY + + G+L
Sbjct: 368 ALLLLWFLVSVPLTFLGGIVGFRNRAGEQHPVRTNQIPRQIPEQPWYLSPLPGILMGGIL 427
Query: 62 SFSIIALELHHLYASLWGYKIFTLPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWW 121
F I +EL ++ SLW +KI+ + G LF++FIIL+V+ + ++I LTY QL ED+ WWW
Sbjct: 428 PFGAIFIELFFIFTSLWLHKIYYMFGFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWW 487
Query: 122 RSVFRGGSTAIFMFAYSI-YFYFRSNMSGF 150
RS GSTA+++F YSI YF+ + +SGF
Sbjct: 488 RSFLTSGSTAVYVFLYSIYYFFTKLKISGF 517
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Length = 518 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 193 | |||
| KOG1278 | 628 | consensus Endosomal membrane proteins, EMP70 [Intr | 100.0 | |
| KOG1277 | 593 | consensus Endosomal membrane proteins, EMP70 [Intr | 100.0 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 100.0 |
| >KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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Probab=100.00 E-value=4.4e-76 Score=541.73 Aligned_cols=191 Identities=38% Similarity=0.842 Sum_probs=188.5
Q ss_pred chhhhHHhhhcchhhhhhhhhcccccCCCCCccCCCCCCCCCCCCCcCCcchhHHhhhhhhHHHHHHHHHHHHHhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREILPLPWYQKSPCQMFIVGLLSFSIIALELHHLYASLWGYK 81 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~GilPF~~i~vEl~~i~~slW~~~ 81 (193)
.++++||+||+||+++||++|+| ++++|+|+||||||||||+||||+|+.+.++++|++||+++++||+||++|+|.||
T Consensus 437 ~ll~LwF~isVPLsf~G~y~g~k-k~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~q 515 (628)
T KOG1278|consen 437 ALLFLWFGISVPLSFVGGYFGFK-KPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQ 515 (628)
T ss_pred HHHHHHHHhhhhHHHhhHHhhcc-CCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999 57889999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCceeeeeeecCChhHHHHHHHHHHHhh-hhcccCcchhhHHHHHH
Q 029473 82 IFTLPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYF-RSNMSGFLQLSFFLGYN 160 (193)
Q Consensus 82 ~yy~fgfL~~~~iil~i~~~~vsI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~-~~~~~g~~~~~lyf~ys 160 (193)
+||+||||++++++|+++|+|+||++||+|||+||||||||||++||++|+|+|+||++|++ |++++|++++++|+|||
T Consensus 516 fYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYs 595 (628)
T KOG1278|consen 516 FYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYS 595 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 029473 161 VAMCYAFFLILGSVSFRASMIFVRRIYRVVKSE 193 (193)
Q Consensus 161 ~l~s~~~~l~~GsiGflas~~Fv~~IY~~iK~d 193 (193)
++++++++++||||||+||+|||||||+++|+|
T Consensus 596 li~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 596 LIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence 999999999999999999999999999999999
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| >KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00