Citrus Sinensis ID: 029474

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEcccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
MERMESLLYEASVEGNITTLLQLleqdplildkvvtnrhhetpLHVAALRGHLDFAKEILRRtpvlageldsrrssplhmaAQKGYVEIVKELLQvnpdmclardvdgrnplhmAAMKGRIQVLVDLFrarpfaayaTTIWSETVLHLCVKHNQLEALKFLVSIMNDrdflnakddygMSILHLAVADKQIEV
Flexible Loop (DISEMBL)
MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLageldsrrssplhmAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV
Low Complexity Region (SEG)
MERMESLLYEASVEGNITTllqlleqdplildKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV
Disordered region (IsUnstruct)
*******LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGE*********HMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA******
Disordered Region (DISOPRED)
MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE*
Disordered Region (DISEMBL)
MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV
Disordered Region (DISPRO)
**RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.730	0.265	0.328	2e-13
Q54F46	803	Homeobox protein Wariai O	yes	no	0.896	0.215	0.314	7e-13
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.968	0.316	0.278	6e-12
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.906	0.093	0.319	3e-11
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.766	0.282	0.286	4e-11
Q7Z020	1296	Transient receptor potent	no	no	0.797	0.118	0.316	1e-10
Q9ET47	871	Espin OS=Mus musculus GN=	yes	no	0.901	0.199	0.316	2e-10
Q80YE7	1442	Death-associated protein	no	no	0.891	0.119	0.292	4e-10
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.901	0.044	0.296	5e-10
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.901	0.043	0.296	6e-10

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 43  PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL 102
             HVAA RGHL   KE+LR  P L    D+  +SPL+ AA + ++EIV  +L V+P   +
Sbjct: 97  AFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAM 156

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
               +G+  LH A   G ++++  L               +T LH+ VK   LE ++ + 
Sbjct: 157 IVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEI- 215

Query: 163 SIMNDRDFLNAKDDYGMSILHLA 185
            +  D   LN +D  G + LH+A
Sbjct: 216 -LQADYTILNERDRKGNTALHIA 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q54F46|WARA_DICDI Homeobox protein Wariai OS=Dictyostelium discoideum GN=warA PE=2 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 8/181 (4%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           S L+ A   G++     LL+ D  +   V T  + ETPLH+A+L+G     K +L  T  
Sbjct: 443 SPLFSACKGGHLQIASSLLDHDAEV--SVKTKINGETPLHIASLKGFEKICK-LLIETEA 499

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLV 125
            A  +DS   +PLH A   GY  I K L+    DM  A D+DG  PLH +++ G   ++ 
Sbjct: 500 KASVIDSNNRTPLHHACIMGYFSIAKLLICNGADMN-AIDIDGHTPLHTSSLMGH-DLIT 557

Query: 126 DLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
            L                T +H  V+ +++E +KFL+   +    LN K   G +++HL+
Sbjct: 558 RLLLENGADPNIQDSEGYTPIHYAVRESRIETVKFLIKFNSK---LNIKTKNGQNLIHLS 614

Query: 186 V 186
           V
Sbjct: 615 V 615

Putative transcription factor, that seems to be involved in anterior-posterior patterning of the slug, probably by controlling the proportions of prestalk and prespore cells.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 2   ERMESLLYEASVEGNITTLLQLLEQDP--LILDKVVTNRHHETPLHVAALRGHLDFAKEI 59
           E  E+ L+ A+ +G++  + +LL+      I  K   NR    PLH+AA++GH    + +
Sbjct: 127 ELGETALFTAADKGHLDVVKELLKYSSRESIAKK---NRSGYDPLHIAAIQGHHAIVEVL 183

Query: 60  LRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG 119
           L     L+       ++PL  AA +G+ E+V +LL    ++      + +N LH+AA +G
Sbjct: 184 LDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQG 243

Query: 120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGM 179
            ++V+  L    P  A       +T LH+ VK    E +K L+    D   +   D    
Sbjct: 244 HVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDA--DPAIVMQPDKSCN 301

Query: 180 SILHLAVADKQIEV 193
           + LH+A   K+ E+
Sbjct: 302 TALHVATRKKRAEI 315

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 13/188 (6%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILR-RTPVL 66
           L+ AS  G++  +  LL++        V+N   ETPLH+AA  GH + AK +L+ +  V 
Sbjct: 408 LHVASFMGHLPIVKNLLQRG---ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 464

Query: 67  AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
           A   D +  +PLH AA+ G+  +VK LL+ N +  LA    G  PLH+AA +G ++ ++ 
Sbjct: 465 AKAKDDQ--TPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLA 521

Query: 127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD-FLNAKDDYGMSILHLA 185
           L       A   T    T LH+  K+ ++   + L+    +RD   NA    G++ LH+A
Sbjct: 522 LLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLL----ERDAHPNAAGKNGLTPLHVA 576

Query: 186 VADKQIEV 193
           V    +++
Sbjct: 577 VHHNNLDI 584

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 44  LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA 103
            H+AA  G+L     ++   P L+   DS +++ LH AA +G+ EIV  LL    D+   
Sbjct: 95  FHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAI 154

Query: 104 RDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
              +G+  LH AA  G   ++  L   +           +T LH+ VK    E +  L+ 
Sbjct: 155 ARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME 214

Query: 164 IMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              D   +N+ D+ G + LH+AV   + E+
Sbjct: 215 A--DGSLINSADNKGNTPLHIAVRKNRAEI 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 7/161 (4%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL--RRT 63
           S L+ AS +G+I +L  L+     I  K   N ++E+PLH AA  G  +  +++L   + 
Sbjct: 545 SPLHYASRDGHIRSLENLIRLGACINLK---NNNNESPLHFAARYGRYNTVRQLLDSEKG 601

Query: 64  PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
             +  E D    +PLH+++Q+G+  +V+ LL  N    L RD  GRNPL +AAM G  + 
Sbjct: 602 SFIINESDGAGMTPLHISSQQGHTRVVQLLL--NRGALLHRDHTGRNPLQLAAMSGYTET 659

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI 164
           +  L                T LHL    N+  A+  L+S+
Sbjct: 660 IELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSM 700

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.

Drosophila melanogaster (taxid: 7227)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           ++ A+  G +  L  L+E+  + L  V   R+  TP H AA  G+L   + +L +     
Sbjct: 40  VHHAARSGKLHCLRYLVEE--VALPAVSRARNGATPAHDAAATGYLSCLQWLLTQGGCRV 97

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELL-QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
            E D+  ++ LH+AA+ G+ ++VK LL Q   +  +  D  G  P+H AA KG +  L  
Sbjct: 98  QEKDNSGATVLHLAARFGHPDVVKWLLYQGGANSAITTDT-GALPIHYAAAKGDLPSLKL 156

Query: 127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
           L    P    A T    T L+L  +   LE  K+LV   +    L A+D  GM+ LH A 
Sbjct: 157 LVGHYPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQD--GMTPLHAAA 214

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           +Y AS  G++ TL + L ++   LD  V ++  ET LHVAA  GH D   ++L       
Sbjct: 416 IYWASRHGHVDTL-KFLNENKCPLD--VKDKSGETALHVAARYGHADVV-QLLCSFGSNP 471

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
              D    +PLH AA  GY  + K L +V  ++ + ++ +G  PL  A+ +G    +V+ 
Sbjct: 472 DFQDKEEETPLHCAAWHGYYSVAKALCEVGCNVNI-KNREGETPLLTASARG-YHDIVEC 529

Query: 128 FRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA 187
                    A+       LHL V+  Q+E +K   +++    F++ +D +G + LH+A  
Sbjct: 530 LAEHGADLNASDKDGHIALHLAVRRCQMEVIK---TLLGHGSFVDFQDRHGNTPLHVACK 586

Query: 188 D 188
           D
Sbjct: 587 D 587

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 15/189 (7%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  GN+     LL +   +     T R+  TPLHVA+ RG+ +  K +L R     
Sbjct: 237 LHIAAHYGNVNVATLLLNRGAAV---DFTARNGITPLHVASKRGNTNMVKLLLDR----G 289

Query: 68  GELDSRRS---SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           G++D++     +PLH AA+ G+ ++V+ LL+    + LAR  +G +PLHMAA    ++ +
Sbjct: 290 GQIDAKTRDGLTPLHCAARSGHDQVVELLLERKAPL-LARTKNGLSPLHMAAQGDHVECV 348

Query: 125 VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL 184
             L + +       T+   T LH+          K L   ++ R   NA+   G + LH+
Sbjct: 349 KHLLQYKA-PVDDVTLDYLTALHVAAHCGHYRVTKLL---LDKRANPNARALNGFTPLHI 404

Query: 185 AVADKQIEV 193
           A    +I+V
Sbjct: 405 ACKKNRIKV 413

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 63.9 bits (154), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 15/189 (7%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  GN+     LL +   +     T R+  TPLHVA+ RG+ +  K +L R     
Sbjct: 237 LHIAAHYGNVNVATLLLNRGAAV---DFTARNGITPLHVASKRGNTNMVKLLLDR----G 289

Query: 68  GELDSRRS---SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           G++D++     +PLH AA+ G+ ++V+ LL+    + LAR  +G +PLHMAA    ++ +
Sbjct: 290 GQIDAKTRDGLTPLHCAARSGHDQVVELLLERGAPL-LARTKNGLSPLHMAAQGDHVECV 348

Query: 125 VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL 184
             L + +       T+   T LH+          K L   ++ R   NA+   G + LH+
Sbjct: 349 KHLLQHKA-PVDDVTLDYLTALHVAAHCGHYRVTKLL---LDKRANPNARALNGFTPLHI 404

Query: 185 AVADKQIEV 193
           A    +I+V
Sbjct: 405 ACKKNRIKV 413

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
343887299	477	ankyrin repeat family protein [Citrus un	1.0	0.404	0.943	1e-103
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.963	0.382	0.625	2e-61
343887311	473	ankyrin repeat family protein [Citrus un	0.979	0.399	0.550	1e-57
343887300	469	ankyrin repeat family protein [Citrus un	0.979	0.402	0.560	1e-54
343887301	470	Ankyrin repeat family protein [Citrus un	0.984	0.404	0.557	1e-54
359475964	491	PREDICTED: ankyrin repeat-containing pro	0.979	0.384	0.631	8e-52
224092119	471	predicted protein [Populus trichocarpa]	1.0	0.409	0.554	3e-50
296081692	444	unnamed protein product [Vitis vinifera]	0.756	0.328	0.650	9e-48
224088778	491	predicted protein [Populus trichocarpa]	1.0	0.393	0.548	9e-48
255560685	525	ankyrin repeat-containing protein, putat	0.968	0.356	0.497	2e-45

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/193 (94%), Positives = 187/193 (96%)

Query: 1   MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL 60
           MERMESLLYEASVEGNITTLLQLLEQDPLILDKVV NRHHETPLHVAALRGHL FAKEIL
Sbjct: 1   MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEIL 60

Query: 61  RRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR 120
           RRTPVLAGELDSR SSPLHMAAQKGYV+IVKELLQVNPDMCLARDVDGRNPLH+AAMKGR
Sbjct: 61  RRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGR 120

Query: 121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMS 180
           IQVLV+LFRARPFAAY+TTIW+ETVLHLCVKHNQ EALKFLVSIMND DFLNAKDDYGMS
Sbjct: 121 IQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMS 180

Query: 181 ILHLAVADKQIEV 193
           ILHLAVADKQIE 
Sbjct: 181 ILHLAVADKQIET 193

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/187 (62%), Positives = 149/187 (79%), Gaps = 1/187 (0%)

Query: 7   LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL 66
           +LYEA+ +G++T+L +LL +DPLI+D+V+ N + ETPLH+AAL GH DFAKEIL + P L
Sbjct: 1   MLYEAAAQGSVTSLYELLLKDPLIIDRVMLN-YTETPLHIAALLGHADFAKEILLQKPEL 59

Query: 67  AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
           A ELD RRSSPLH+AA KGY+EIVKELL VNP+MCLA D DGRNP+H+AAM+G + VL +
Sbjct: 60  AAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKE 119

Query: 127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
           L +A+P A +A     ET+LHLCVKHNQLEALK LV   +  + ++AKDD G +ILHLAV
Sbjct: 120 LVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAV 179

Query: 187 ADKQIEV 193
           ADKQ+E 
Sbjct: 180 ADKQLET 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 150/189 (79%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           ME  +YEA+V+G++ +L+ LL++D L+LD+ + + H ETPLH+A++ GH+DF +EI+ + 
Sbjct: 1   MERRIYEAAVDGSVASLIHLLQEDALVLDRFMVSCHAETPLHIASMLGHVDFVQEIVSQK 60

Query: 64  PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           P LAGELDSR++SPLH+A+ KGY+ IVK+L+ VNP+MC  RD DGRNPLH+AA+KG + V
Sbjct: 61  PELAGELDSRKASPLHVASAKGYLVIVKKLVSVNPEMCYVRDRDGRNPLHVAAIKGHVNV 120

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
           L +L + RP AA       ET+LH CV++NQLE++KFL+ I++DR+F+N K++ G +ILH
Sbjct: 121 LRELVQVRPQAARMLMDRGETILHACVRYNQLESMKFLLDILSDREFVNYKNNDGNTILH 180

Query: 184 LAVADKQIE 192
           LAVADKQ E
Sbjct: 181 LAVADKQTE 189

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 140/189 (74%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           ME  +YEA+VEG++ +LL+LL++D L+LD+ + + + ETPLH+A++ GH  F +EIL R 
Sbjct: 1   MERRVYEAAVEGSVESLLKLLQEDALLLDRSMVSCYSETPLHIASMLGHESFVREILSRK 60

Query: 64  PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           P LAGELDSRRSS LH AA KG++ IV +LL VNP MC A D DG+NPLH+AA+KG + V
Sbjct: 61  PELAGELDSRRSSALHFAAAKGHLGIVLKLLSVNPKMCCACDRDGKNPLHVAAIKGHVNV 120

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
           L +L + RP A        ET+LH CV +NQLE LK LV  +ND +F+N+KDD G +ILH
Sbjct: 121 LRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILH 180

Query: 184 LAVADKQIE 192
           LAV DKQ+E
Sbjct: 181 LAVIDKQVE 189

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 142/190 (74%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           ME  +YEA+VEG++ +LL+LL++D L+LD+ + + + ETPLHVA++ GH +F +EIL R 
Sbjct: 1   MERRVYEAAVEGSVESLLKLLQEDALLLDRSMVSCYSETPLHVASMLGHENFVREILSRK 60

Query: 64  PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           P LAGELDSRRSS LH+AA KG++ IV +L+ VNP MC A D DG+NPLH+AA+KG + V
Sbjct: 61  PELAGELDSRRSSALHLAAAKGHLGIVLKLVSVNPKMCCACDRDGKNPLHVAAIKGHVNV 120

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
           L +L + RP A        ET+LH CV +NQLE LK LV  +ND +F+N+KDD G +ILH
Sbjct: 121 LRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILH 180

Query: 184 LAVADKQIEV 193
           LAV DKQ+E 
Sbjct: 181 LAVIDKQVET 190

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475964|ref|XP_002279612.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 120/190 (63%), Positives = 143/190 (75%), Gaps = 1/190 (0%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           ME +LYEA++EG++ +L QLL+QD LILD+V+ +   ETPLHVAA+ GH DF KEIL   
Sbjct: 1   MERMLYEAAMEGSVASLQQLLQQDRLILDRVIVDCITETPLHVAAMLGHTDFVKEILCLK 60

Query: 64  PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           P LA ELDSR  SPLH+A+ KGY E+VK  L V+PDMC A D  GRNPLH+AAMKGR  V
Sbjct: 61  PELARELDSRGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDRYGRNPLHLAAMKGRFDV 120

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND-RDFLNAKDDYGMSIL 182
           L +L RARP AA A     ET+LHLCVK NQLEALKFLV  M+D  D +N +D+ G +IL
Sbjct: 121 LKELVRARPHAARARAERGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTIL 180

Query: 183 HLAVADKQIE 192
           HLAVADKQIE
Sbjct: 181 HLAVADKQIE 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 141/193 (73%)

Query: 1   MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL 60
           ME M+  L EA+VEGN+  LL+LLE+D L+LD   T+   ETPLH++A+ GHL+F ++IL
Sbjct: 12  MEEMQRRLKEAAVEGNVIALLKLLEEDKLVLDGCATDCFTETPLHISAMLGHLEFTRKIL 71

Query: 61  RRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR 120
            R P  A ELD   SSPLH+A   G++E+V+ LL VNPDMC A++ DGRNPLH+A +KGR
Sbjct: 72  CRKPEFAKELDFLGSSPLHLATANGHLEVVRALLSVNPDMCFAQNRDGRNPLHIAVIKGR 131

Query: 121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMS 180
           + VL +L + +P A    T   ETVLHLCVKH QLEALK LV  + D  F+N+KD+ G +
Sbjct: 132 VDVLKELVQNKPEAVLHRTARGETVLHLCVKHFQLEALKLLVETIKDYGFINSKDEDGST 191

Query: 181 ILHLAVADKQIEV 193
           +LHLAVADK+IE+
Sbjct: 192 VLHLAVADKEIEI 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081692|emb|CBI20697.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 114/146 (78%)

Query: 48  ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
           AL GH DFAKEIL + P LA ELD RRSSPLH+AA KGY+EIVKELL VNP+MCLA D D
Sbjct: 14  ALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRD 73

Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
           GRNP+H+AAM+G + VL +L +A+P A +A     ET+LHLCVKHNQLEALK LV   + 
Sbjct: 74  GRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADA 133

Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
            + ++AKDD G +ILHLAVADKQ+E 
Sbjct: 134 HEIMSAKDDNGFTILHLAVADKQLET 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088778|ref|XP_002308536.1| predicted protein [Populus trichocarpa] gi|222854512|gb|EEE92059.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 143/197 (72%), Gaps = 4/197 (2%)

Query: 1   MERMESL---LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAK 57
           MERME +   L +A+VEGN+T+LL LL++D L LD+       ETPLH+AA+ GHL+F +
Sbjct: 36  MERMEEVQRKLLDAAVEGNVTSLLILLQEDKLFLDRCAVTCPAETPLHIAAMLGHLEFTR 95

Query: 58  EILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAM 117
           EIL R P L  ELD  RSSPLH+A   G++E+V+ LL V+ D+CL +D +  NPLH+A +
Sbjct: 96  EILWRKPDLVNELDLHRSSPLHLATANGHLEVVRVLLLVDADLCLVKDRNRWNPLHVAVI 155

Query: 118 KGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI-MNDRDFLNAKDD 176
           KGRI VL +L +A+P A        ET+LHLCVKH QLEALKFLV I + D +F+N++DD
Sbjct: 156 KGRIDVLKELVQAKPDAIRTRGQRGETILHLCVKHYQLEALKFLVGITIADTEFVNSEDD 215

Query: 177 YGMSILHLAVADKQIEV 193
            G +ILHLAVAD++IEV
Sbjct: 216 DGFTILHLAVADREIEV 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560685|ref|XP_002521356.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223539434|gb|EEF41024.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 129/187 (68%)

Query: 7   LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL 66
           +L + S+ G++  L  LL++D LILD+      HETPLH+AA+ GHL FA+ +L R P L
Sbjct: 17  ILCKVSLRGDVPALEALLQEDELILDRASVTCFHETPLHIAAMLGHLHFARALLSRKPKL 76

Query: 67  AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
           + ELDS R  PLH+A+ +GY++IVKELL  +PD C ARD +GR PLH+AA+KGRI ++ +
Sbjct: 77  SNELDSHRRLPLHLASAEGYLDIVKELLDASPDACSARDQEGRIPLHLAAIKGRIDIMKE 136

Query: 127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
           L R  P +        +T+LHLCV++N+LEALK LV    D +F+NA DD G +ILHL+ 
Sbjct: 137 LLRICPDSMTEKLDHGKTILHLCVEYNRLEALKLLVETARDDEFVNASDDNGNTILHLSA 196

Query: 187 ADKQIEV 193
             KQ+E 
Sbjct: 197 ILKQVET 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.787	0.356	0.356	6.4e-19
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.699	0.235	0.348	6.4e-19
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.704	0.307	0.375	9.3e-18
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.746	0.334	0.350	1.8e-17
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.746	0.323	0.318	2e-16
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.746	0.330	0.311	1.7e-14
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.720	0.261	0.333	2.1e-14
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.958	0.279	0.278	3.1e-14
DICTYBASE|DDB_G0291075	803	warA "putative homeobox transc	0.761	0.183	0.333	8.9e-14
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.963	0.306	0.264	1.5e-13

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 6.4e-19, P = 6.4e-19
 Identities = 57/160 (35%), Positives = 86/160 (53%)

Query:    42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             TPLH A+  G LD A E++   P  A +L+    SPLH+A +   VE+  EL++V+P + 
Sbjct:    39 TPLHEASSAGKLDLAMELMILKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLV 98

Query:   102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
               R   G  PLH+ A KG + +L D   A P +     +  ET+LH+ + +++ E LK L
Sbjct:    99 RIRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVL 158

Query:   162 ---VSIMNDRD--F---LNAKDDYGMSILHLAVADKQIEV 193
                +  M D D  F   LN +D  G ++LHLA  +   +V
Sbjct:   159 TGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLAAYENNDKV 198

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 47/135 (34%), Positives = 68/135 (50%)

Query:    52 HLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNP 111
             + D A+ +L R P LA   D   S+PLH A     +EI K LL+++  +    + DG  P
Sbjct:   162 YTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFTP 221

Query:   112 LHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFL 171
             LH+AAMK  I +L +     P      T   ETV HL  +H  + A  F+    +  + L
Sbjct:   222 LHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPDRNNLL 281

Query:   172 NAKDDYGMSILHLAV 186
             +  D YG ++LH AV
Sbjct:   282 HQVDRYGNTVLHTAV 296

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 9.3e-18, P = 9.3e-18
 Identities = 53/141 (37%), Positives = 79/141 (56%)

Query:    56 AKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA 115
             A +ILR+  V   +LD    SPLH AA  G VE V+  L V   +C  +D DG+ PLH+A
Sbjct:    31 AGKILRQRSVF--DLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVA 88

Query:   116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDR---DFLN 172
              M+G+I V+ ++  +        T+  +T LHL V H ++EA+  +V ++ +    D LN
Sbjct:    89 TMRGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLN 148

Query:   173 AKDDYGMSILHLAVADKQIEV 193
              KD+ G + LHLA   K  +V
Sbjct:   149 KKDEQGNTALHLATWRKNRQV 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 54/154 (35%), Positives = 81/154 (52%)

Query:    42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             TPLH A+  G  D A E++   P  A +L+S   SPLH+A +   V++  EL+++NPD+ 
Sbjct:    39 TPLHEASSTGKTDLAMELMVLKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLV 98

Query:   102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
             L     G  PLH+   KG   +L +   A P +   T +  ET LH+ V +++ E LK L
Sbjct:    99 LVAGRKGMTPLHLVVKKGDANLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVL 158

Query:   162 ---VSIMNDRD-------FLNAKDDYGMSILHLA 185
                +  ++  D        LN +D  G +ILHLA
Sbjct:   159 TGWIHRLHKSDAASTEIHVLNKRDRDGNTILHLA 192

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 49/154 (31%), Positives = 79/154 (51%)

Query:    42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             TPLH+A+  G+L FA E++   P  A +L++   SPLH+A ++G   +V  LL+V+ D+ 
Sbjct:    39 TPLHIASASGNLSFAMELMNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLV 98

Query:   102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
               R  +G  P H    +G   ++ +   A P       +  ET LH+ V +++ E L+ L
Sbjct:    99 RLRGREGMTPFHQVVRRGETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVL 158

Query:   162 ---VSIMNDRD-------FLNAKDDYGMSILHLA 185
                V  +   D       FLN +D  G + LH+A
Sbjct:   159 LGWVQRLRQTDAESLEMQFLNKRDQDGNTALHIA 192

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 48/154 (31%), Positives = 78/154 (50%)

Query:    42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             TPLHVAA   ++ FA E+L   P  A +L++   SPLH+A +K + E +  LL  +P + 
Sbjct:    39 TPLHVAAASDNIPFAMEMLNLKPSFARKLNTSGYSPLHLAVEKDHREFITWLLWRDPGLV 98

Query:   102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
               +  +G  P H+ A++G + ++ +  +  P      ++     LHL V +++ E L+ L
Sbjct:    99 RVKGREGITPFHLLAIRGDVNLVAECLKYCPVCIQDVSVNGHNALHLAVMNDRFEILQVL 158

Query:   162 V----------SIMNDRDFLNAKDDYGMSILHLA 185
                        S   + DFLN KD    + LHLA
Sbjct:   159 TGWLQRMSQKDSASTESDFLNRKDLAHNTPLHLA 192

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 47/141 (33%), Positives = 72/141 (51%)

Query:    45 HVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLAR 104
             HVAA RGHL   KE+LR  P L    D+  +SPL+ AA + ++EIV  +L V+P   +  
Sbjct:    99 HVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIV 158

Query:   105 DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI 164
               +G+  LH A   G ++++  L               +T LH+ VK   LE ++ ++  
Sbjct:   159 RKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQA 218

Query:   165 MNDRDFLNAKDDYGMSILHLA 185
               D   LN +D  G + LH+A
Sbjct:   219 --DYTILNERDRKGNTALHIA 237

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.1e-14, P = 3.1e-14
 Identities = 53/190 (27%), Positives = 93/190 (48%)

Query:     5 ESLLYEASVEGNITTXXXXXXXXXXXXXKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
             E+ LY A+  G+                 +   R+   P HVAA +GHL+  K +L   P
Sbjct:   190 ETPLYTAAENGHSIVVEEMLKHMDLETASIAA-RNGFDPFHVAAKQGHLEVLKILLETFP 248

Query:    65 VLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
              LA   D   ++ LH AA +G++++V  LL+ + ++      +G+  LH AA  G ++V+
Sbjct:   249 NLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVV 308

Query:   125 VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN-DRDFLNAKDDYGMSILH 183
               L    P   + T    +T LH+ VK  Q + +  +V ++  D   L+ +D+ G + LH
Sbjct:   309 KSLIGKDPSIGFRTDKKGQTALHMAVK-GQNDGI--VVELVKPDVAVLSVEDNKGNTPLH 365

Query:   184 LAVADKQIEV 193
             +A    +I++
Sbjct:   366 IATNKGRIKI 375

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0291075 warA "putative homeobox transcription factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 51/153 (33%), Positives = 77/153 (50%)

Query:    34 VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
             V T  + ETPLH+A+L+G     K +L  T   A  +DS   +PLH A   GY  I K L
Sbjct:   469 VKTKINGETPLHIASLKGFEKICK-LLIETEAKASVIDSNNRTPLHHACIMGYFSIAKLL 527

Query:    94 LQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN 153
             +    DM  A D+DG  PLH +++ G   ++  L                T +H  V+ +
Sbjct:   528 ICNGADMN-AIDIDGHTPLHTSSLMGH-DLITRLLLENGADPNIQDSEGYTPIHYAVRES 585

Query:   154 QLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
             ++E +KFL+   N +  LN K   G +++HL+V
Sbjct:   586 RIETVKFLIKF-NSK--LNIKTKNGQNLIHLSV 615

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 50/189 (26%), Positives = 88/189 (46%)

Query:     5 ESLLYEASVEGNITTXXXXXXXXXXXXXKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
             E+ L+ A+ +GNI                +  N      LH+A  +GH    + +L   P
Sbjct:   144 ETPLFTAAEKGNIDVVKELLPYTTIESL-MQKNLSGFDALHIACSQGHRSIVQLLLEHEP 202

Query:    65 VLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
              L+  +    ++PL  AA +G+ E+V ELL  +  +      +G+N LH+AA +G + ++
Sbjct:   203 QLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQGHVDIV 262

Query:   125 VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL 184
               L    P  A  T    +T LH+ VK    + ++ L+    D   +   D +G ++LH+
Sbjct:   263 RTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRA--DPAIVMLPDKFGNTVLHI 320

Query:   185 AVADKQIEV 193
             A   K+ E+
Sbjct:   321 ATRKKRAEI 329

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.9 bits (213), Expect = 5e-22
 Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
             +    TPLH+AA  GHL+  K +L     +    D+   +PLH+AA+ G++EIVK LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 95  QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ 154
           +   D+  ARD DG  PLH+AA  G + V V L         A      T LHL  K+  
Sbjct: 61  EKGADVN-ARDKDGNTPLHLAARNGNLDV-VKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

Query: 155 LEALKFLV 162
           LE +K L+
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.8 bits (205), Expect = 9e-21
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D    +PLH+AA  G++E+VK LL+   D+  A+D DGR PLH+AA  G ++++  L   
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ 190
                 A      T LHL  ++  L+ +K L+    D   +NA+D  G + LHLA  +  
Sbjct: 63  GAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGH 118

Query: 191 IEV 193
           +EV
Sbjct: 119 LEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.9 bits (200), Expect = 6e-20
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
            + L+ A+  G++  +  LLE      D    +    TPLH+AA  GHL+  K +L +  
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGA---DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 65  VLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
            +    D   ++PLH+AA+ G +++VK LL+   D+  ARD DGR PLH+AA  G ++V+
Sbjct: 65  DVN-ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVV 122

Query: 125 VDL 127
             L
Sbjct: 123 KLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 3e-15
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 44  LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA 103
           LH+AA  G+L+  K +L +   +         + LH+AA+ G +EIVK LL+   D+  A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVN-A 56

Query: 104 RDVDGRNPLHMAAMKGRIQVL 124
           +D DG   LH+AA  G ++++
Sbjct: 57  KDKDGNTALHLAARNGNLEIV 77

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G++  +  LLE+     D    ++   TPLH+AA  G+LD  K +L+    + 
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGA---DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV- 99

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELL 94
              D    +PLH+AA+ G++E+VK LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 8   LYEASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           L+ A+  GN+  +  LLE+  D  + D        +T LH+AA  G+L+  K +L     
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT-------DTALHLAARNGNLEIVKLLLEHGAD 53

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL 102
           +    D   ++ LH+AA+ G +EIVK LL+   D+ L
Sbjct: 54  VN-AKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 11/163 (6%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHL-----DFAKEIL 60
             L+ A+ +G+   +  LL       D    +   +TPLH+AAL G+      + AK +L
Sbjct: 75  LPLHSAASKGDDKIVKLLLASG---ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131

Query: 61  RRTPVL--AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK 118
                L      D   ++PLH AA  G  +IV+ LL+   D   +R+  G   L  AA  
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKN 190

Query: 119 GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
           GRI+++  L       +               K N L     +
Sbjct: 191 GRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 40/116 (34%)

Query: 78  LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYA 137
           LH+AA+ G +E+VK LL+   D+ L                                   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--------------------------------- 27

Query: 138 TTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
               ++T LHL  ++  LE +K L+    D   +NAKD  G + LHLA  +  +E+
Sbjct: 28  ----TDTALHLAARNGNLEIVKLLLEHGAD---VNAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.2 bits (119), Expect = 8e-08
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 13/158 (8%)

Query: 44  LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA 103
           L +A L         +           D     PLH AA KG  +IVK LL    D+  A
Sbjct: 43  LELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVN-A 101

Query: 104 RDVDGRNPLHMAAMKGRIQ----VLVDLFRARPFAAYATTIWS----ETVLHLCVKHNQL 155
           +D DG  PLH+AA+ G        +  L      A             T LH    +   
Sbjct: 102 KDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 156 EALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           + ++ L+    D    N+++ YG++ L  A  + +IE+
Sbjct: 161 DIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIEL 195

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 74  RSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
             + LH AA  G +E+VK LL+   D     D DG   LH+AA  G ++VL  L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 59  ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA 115
           +L   P+     D   ++PLH+AA+ G +E+V+ LL+   D    RD DG   L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 76  SPLHMAAQKGYVEIVKELLQVNPDMCLARDV---DGRNPLHMAAMKGRIQVLVDLFRARP 132
           S LH A ++G V+ V+ELL +      A DV   DG  PLH+A +  ++ ++  L     
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGK---FADDVFYKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 133 FAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE 192
                 T    + LHL V    ++ ++ L+   + +  L+ +D  G + L +A+A   I 
Sbjct: 127 DPDIPNTD-KFSPLHLAVMMGDIKGIELLI---DHKACLDIEDCCGCTPLIIAMAKGDIA 182

Query: 193 V 193
           +
Sbjct: 183 I 183

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
           GR  LH AA+ GR++ LV     +      T     T LH+  ++  LE LK L+
Sbjct: 1   GRTALHKAAISGRLE-LVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           +ES L++A  EG++  + +LL+      D  V  +   TPLH+A +   LD  K ++ R 
Sbjct: 68  IESELHDAVEEGDVKAVEELLDLGKFADD--VFYKDGMTPLHLATILKKLDIMKLLIAR- 124

Query: 64  PVLAGELD---SRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR 120
                + D   + + SPLH+A   G ++ ++ L+     + +  D  G  PL +A  KG 
Sbjct: 125 ---GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI-EDCCGCTPLIIAMAKGD 180

Query: 121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
           I +   L  +     Y         L   +++N+++ ++  + 
Sbjct: 181 IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           DS+  +PLH+AA KGY + V  LL+   ++ + RD +G   L  A      ++   L+  
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNAISAKHHKIFRILYH- 612

Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ 190
             FA+ +    +  +L    K N L A+K L+    + D   ++D  G + L +A+A+  
Sbjct: 613 --FASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD---SEDHQGATALQVAMAEDH 667

Query: 191 IEV 193
           +++
Sbjct: 668 VDM 670

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 26/135 (19%)

Query: 75  SSPLHMAAQKGYV-----EIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQV-LVD 126
           S+PLH  +   Y      EIVK LL+   N +     D +G  PL  A  K      +V+
Sbjct: 69  STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAP---DNNGITPLLYAISKKSNSYSIVE 125

Query: 127 LFRARPFAAYATTIWSETVLHLCVK--HNQLEALKFLVS------IMNDRDFL------- 171
                           E +LHL ++     L+ LK L+         N  ++L       
Sbjct: 126 YLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPI 185

Query: 172 NAKDDYGMSILHLAV 186
           N KD YG + LH AV
Sbjct: 186 NIKDVYGFTPLHYAV 200

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 23 LLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA 81
          LLE  P+  D   T+ +  TPLH+AA  G L+  + +L+   V     DS   + L +A
Sbjct: 1  LLEHGPI--DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 76  SPLHMAAQKGYVEIVKELLQVN--PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPF 133
           SP+ +A +    E +K L++    PD+   +  D  + LH A  +G ++ + +L     F
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDV---KYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 134 AAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE 192
           A         T LHL     +L+ +K L++   D D  N       S LHLAV    I+
Sbjct: 94  ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK---FSPLHLAVMMGDIK 149

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
            T LH AA+ G L+  K +L    V     D   ++ LH+AA+ G +E++K LL
Sbjct: 1  GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 76  SPLHMAAQKGYVEIVKELLQVNPDMCL 102
           +PLH+AA+ G++E+VK LL+   D+  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	99.98
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.84
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.73
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.66
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.63
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.6
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.59
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.59
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.15
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.15
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.14
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.12
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.06
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.04
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.0
PF13606	30	Ank_3: Ankyrin repeat	99.0
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.97
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.94
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.86
PF13606	30	Ank_3: Ankyrin repeat	98.84
KOG0522	560	consensus Ankyrin repeat protein [General function	98.83
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.79
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.75
KOG0522	560	consensus Ankyrin repeat protein [General function	98.71
KOG0511	516	consensus Ankyrin repeat protein [General function	98.6
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.49
KOG0511	516	consensus Ankyrin repeat protein [General function	98.46
KOG2384	223	consensus Major histocompatibility complex protein	98.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.28
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.16
KOG2384	223	consensus Major histocompatibility complex protein	98.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.01
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.33
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.3
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.03
KOG2505	591	consensus Ankyrin repeat protein [General function	96.98
KOG2505	591	consensus Ankyrin repeat protein [General function	96.83
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.44
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.42
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.37
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	87.98
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	83.41

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-40  Score=207.67  Aligned_cols=175  Identities=27%  Similarity=0.317  Sum_probs=134.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhc-CCccccccccCCCCHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~l~~a   81 (193)
                      ++++|||+||..|..+++.+|++.- + ..++.+|..|+||||.|+..|+.++|+.|+.+ ++.+ +..+..|+|+||||
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~-n-v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyA  113 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQP-N-VKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYA  113 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcC-C-CCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhh
Confidence            5678888888888888888888632 2 24445677788888888888888888888877 4444 67777788888888


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      +..|..++..+|+++|+.+ .++|..|.||||.|+..|+++++++|+.. +..++..|..|+||||.|...++.+..-.|
T Consensus       114 agK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~-~a~~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQ-GAPLNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             hcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhc-CCCCCcccccCccHHHHHHhccCchHHHHH
Confidence            8888888888888888777 77888888888888888888888888874 467777888888888888777788888888


Q ss_pred             HHhcCccccccccCCCCchHHHHHH
Q 029474          162 VSIMNDRDFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tpl~~A~  186 (193)
                      +++|++   ....|++| ||+..|.
T Consensus       192 V~~gAd---~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  192 VRAGAD---TDREDKEG-TALRIAC  212 (226)
T ss_pred             HHhccc---eeeccccC-chHHHHH
Confidence            888877   77777777 7776654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-39  Score=204.62  Aligned_cols=182  Identities=29%  Similarity=0.380  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCC-CCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNR-HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~-~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ..++.+.++.......++.+++..+.  +.+.++. +|+||||+||..|+.+++.+|++.....++.+|..|+||||+|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~k--SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPK--SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChh--hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            45778888888888899999998873  3344454 89999999999999999999997555555777999999999999


Q ss_pred             HcCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           83 QKGYVEIVKELLQV-NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        83 ~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      ..|+-++++.|+.+ ++++ +..++.|.|+||+|+..|..++..+|++ .+..+..+|..|.||||.|+.-|..+++++|
T Consensus        81 s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHH
Confidence            99999999999999 8888 8999999999999999999999999998 6689999999999999999999999999999


Q ss_pred             HHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +..|+.   +|.+|..|+||||.|..-|+.+
T Consensus       159 i~~~a~---~n~qDk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  159 ISQGAP---LNTQDKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             HhcCCC---CCcccccCccHHHHHHhccCch
Confidence            999988   9999999999999997766654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=218.62  Aligned_cols=179  Identities=20%  Similarity=0.277  Sum_probs=157.9

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.||||+|+..|+.++++.|++.++..   +.  .+|.||||+|+..|+.+++++|++.+... +.++..|.||||+|+
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~---n~--~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa  102 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALK---NL--LENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCC---cC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            5789999999999999999999999754   22  24789999999999999999999999876 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCC-CcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDG-RNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      ..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++.++....  ...|.||||+|+..|+.+++++|
T Consensus       103 ~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lL  179 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILL  179 (284)
T ss_pred             HcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cccCccHHHHHHHcCCHHHHHHH
Confidence            999999999999999988 6667666 5899999999999999999985432211  13589999999999999999999


Q ss_pred             HHhcCccccccccCCCCchH-HHHHHhcCCccC
Q 029474          162 VSIMNDRDFLNAKDDYGMSI-LHLAVADKQIEV  193 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tp-l~~A~~~~~~ei  193 (193)
                      +++|++   ++.+|..|.|| ||+|+.+|+.|+
T Consensus       180 L~~gAd---~n~~d~~g~t~~L~~Aa~~~~~e~  209 (284)
T PHA02791        180 LDYMTS---TNTNNSLLFIPDIKLAIDNKDLEM  209 (284)
T ss_pred             HHCCCC---CCcccCCCCChHHHHHHHcCCHHH
Confidence            999999   88999999987 999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.3e-36  Score=223.29  Aligned_cols=181  Identities=20%  Similarity=0.210  Sum_probs=105.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      +.||||.|+..|+.++++.|++.|+.   ++..+..+.+|||.|+..|+.+++++|++.+....+..+..|.||||+|+.
T Consensus        35 g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         35 GISPIKLAMKFRDSEAIKLLMKHGAI---PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC---ccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            45555555555555555555555542   222334455555555555555555555555544433444556666666666


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|++
T Consensus       112 ~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        112 LKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             hCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            66666666666666665 5555566666666666666666666665 344555566666666666666666666666666


Q ss_pred             hcCccccccccCCCCc-hHHHHHHhcCCcc
Q 029474          164 IMNDRDFLNAKDDYGM-SILHLAVADKQIE  192 (193)
Q Consensus       164 ~g~~~~~~~~~d~~g~-tpl~~A~~~~~~e  192 (193)
                      +|++   ++..+..|. ||+|+|+..++.+
T Consensus       190 ~ga~---~n~~~~~~~~t~l~~A~~~~~~~  216 (413)
T PHA02875        190 SGAN---IDYFGKNGCVAALCYAIENNKID  216 (413)
T ss_pred             CCCC---CCcCCCCCCchHHHHHHHcCCHH
Confidence            6665   555555543 5666666666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-36  Score=222.48  Aligned_cols=182  Identities=21%  Similarity=0.230  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      .+++|+.|+..|++++++.|++.|.   +++..+..|.||||+|+..|+.+++++|++++..+ +..+..+.+|||.|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~---~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI---NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHH
Confidence            3689999999999999999999997   44556778999999999999999999999999876 5667889999999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|++
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~  156 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLID  156 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999987756667789999999999999999999998 677899999999999999999999999999999


Q ss_pred             hcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          164 IMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       164 ~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +|++   ++.+|..|.||||+|+..|+.|+
T Consensus       157 ~g~~---~~~~d~~g~TpL~~A~~~g~~ei  183 (413)
T PHA02875        157 HKAC---LDIEDCCGCTPLIIAMAKGDIAI  183 (413)
T ss_pred             cCCC---CCCCCCCCCCHHHHHHHcCCHHH
Confidence            9998   88999999999999999998763

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=196.49  Aligned_cols=176  Identities=20%  Similarity=0.200  Sum_probs=155.2

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC--ChHHHHHHHhcCCccccccc-cCCCCHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG--HLDFAKEILRRTPVLAGELD-SRRSSPL   78 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~-~~~~~~l   78 (193)
                      ++..+||+.|+..|+++.|+.|++..      +..+..|.||||+|+..+  +.+++++|++++..+ +.++ ..|.|||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpL   91 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSAL   91 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHH
Confidence            45689999999999999999999753      245788999999999854  899999999999987 5555 5899999


Q ss_pred             HHHHHc---CCHHHHHHHHhhCCCccccccCCCCcHHHHHHH--cCCHHHHHHHHHhCCCccccccccCccHHhH-HHHh
Q 029474           79 HMAAQK---GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAM--KGRIQVLVDLFRARPFAAYATTIWSETVLHL-CVKH  152 (193)
Q Consensus        79 ~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~-a~~~  152 (193)
                      |+|+..   +..+++++|+++|+++ +..+..|.||||.|+.  .++.+++++|++ .+.+++.+|..|+||||. ++..
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhc
Confidence            998764   4799999999999999 8899999999999876  468999999998 678999999999999996 5667


Q ss_pred             CcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       153 ~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      ++.+++++|+++|++   ++.+|..|.||||+|..++
T Consensus       170 ~~~~iv~~Ll~~Gad---i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGID---INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhhh
Confidence            899999999999998   8999999999999998765

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.7e-35  Score=217.52  Aligned_cols=179  Identities=22%  Similarity=0.248  Sum_probs=152.3

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcc----------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL----------------   66 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~----------------   66 (193)
                      ++.|||+.|+..|+.+++++|++.|+++   +..+..|.||||.|+..|+.+++++|++++...                
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~---n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADI---NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            5679999999999999999999999744   456778899999999999999999999876432                


Q ss_pred             ------ccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccc
Q 029474           67 ------AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI  140 (193)
Q Consensus        67 ------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  140 (193)
                            .+.++..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+.
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~  188 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDN  188 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCC
Confidence                  2445778999999999999999999999999988 7788899999999999999999999998 5668888889


Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      .|+||||+|+..|+.+++++|+++|++   ++.++..|.||||+|+..+
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~---i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNH---IMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC---CcCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999999877   5666666666666666544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.8e-35  Score=220.88  Aligned_cols=181  Identities=24%  Similarity=0.342  Sum_probs=153.2

Q ss_pred             hhhHHHHHHH--HhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC--ChHHHHHHHhcCCccccccccCCCCHH
Q 029474            3 RMESLLYEAS--VEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG--HLDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         3 ~~~~~L~~A~--~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      .+.||||+|+  ..|+.++++.|++.+++   .+..+..|.||||+|+..|  +.+++++|++++... +.++..|.|||
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL  180 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGAN---VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPL  180 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHH
Confidence            4678888888  88888888888888864   4456778888888888888  888888888888776 56677888888


Q ss_pred             HHHHHcCCHHHHHHHHhhCCCccccccCCC------CcHHHHHHHcCC--HHHHHHHHHhCCCccccccccCccHHhHHH
Q 029474           79 HMAAQKGYVEIVKELLQVNPDMCLARDVDG------RNPLHMAAMKGR--IQVLVDLFRARPFAAYATTIWSETVLHLCV  150 (193)
Q Consensus        79 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  150 (193)
                      |+|+..|+.+++++|+++|++. +..+..+      .||+|.|+..++  .+++++|++ .|.+++..|..|.||||+|+
T Consensus       181 ~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A~  258 (480)
T PHA03100        181 HIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYAV  258 (480)
T ss_pred             HHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH
Confidence            8888888888888888888887 5666666      788888888888  888988887 56788888899999999999


Q ss_pred             HhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          151 KHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       151 ~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      ..++.+++++|+++|++   ++.+|..|.||+++|+.+++.+
T Consensus       259 ~~~~~~iv~~Ll~~gad---~n~~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        259 YNNNPEFVKYLLDLGAN---PNLVNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             HcCCHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHhCCHH
Confidence            99999999999999987   8889999999999999888765

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.9e-34  Score=212.62  Aligned_cols=176  Identities=22%  Similarity=0.301  Sum_probs=160.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.+.++.|++.+++   ++..|..|.||||+|+..|+.+++++|++++... +..+..|.||||+|+
T Consensus       123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad---~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~  198 (434)
T PHA02874        123 ELKTFLHYAIKKGDLESIKMLFEYGAD---VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAA  198 (434)
T ss_pred             CCccHHHHHHHCCCHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            578999999999999999999999974   4567889999999999999999999999999876 677899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC-cHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN-QLEALKFL  161 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~L  161 (193)
                      ..|+.+++++|++.|.+. +..+..|.||||.|+..+. +.+.+|+.  +.+++..|..|+||||+|+..+ +.+++++|
T Consensus       199 ~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv~~L  274 (434)
T PHA02874        199 EYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDIL  274 (434)
T ss_pred             HcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHH
Confidence            999999999999999988 7788899999999998765 56777774  5678889999999999999875 88999999


Q ss_pred             HHhcCccccccccCCCCchHHHHHHhcC
Q 029474          162 VSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      +++|++   ++.+|..|.||||+|+..+
T Consensus       275 l~~gad---~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        275 LYHKAD---ISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHCcCC---CCCCCCCCCCHHHHHHHhC
Confidence            999999   8999999999999999876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.9e-34  Score=212.09  Aligned_cols=180  Identities=25%  Similarity=0.269  Sum_probs=160.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhc-CcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            5 ESLLYEASVEGNITTLLQLLEQ-DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      -..++.|++.|+++.++.+++. +.   +++..|.+|.++||+|+.+++.+++++|+++++.++..-..-+.||||||++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~---~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGE---SVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCc---CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHH
Confidence            3467889999999999999998 53   5566788999999999999999999999999998843333778899999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      +|+..++++|+++|+++ ...|..|.+|+|.|++.++..++-+++. .+.+++.+|.+|+||||+|+..|....++.|++
T Consensus       122 ~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK  199 (600)
T ss_pred             cCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH
Confidence            99999999999999999 8899999999999999999999999998 458999999999999999999998888999999


Q ss_pred             hcCccccccccC-CCCchHHHHHHhcCCcc
Q 029474          164 IMNDRDFLNAKD-DYGMSILHLAVADKQIE  192 (193)
Q Consensus       164 ~g~~~~~~~~~d-~~g~tpl~~A~~~~~~e  192 (193)
                      .|+.   +...| ..|.||||+|+..|+.+
T Consensus       200 f~a~---~~~~d~~~g~TpLHwa~~~gN~~  226 (600)
T KOG0509|consen  200 FGAS---LLLTDDNHGNTPLHWAVVGGNLT  226 (600)
T ss_pred             hccc---ccccccccCCchHHHHHhcCCcc
Confidence            9988   77777 99999999999998865

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.9e-34  Score=212.14  Aligned_cols=178  Identities=17%  Similarity=0.221  Sum_probs=138.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCC--hHHHHHHHhcCCccccccccCCCCHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGH--LDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      ++.||||+|+..|+.++++.|++.|++   ++.+|..|.||||+|+..++  .+++++|++++.......+..|.|||| 
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAd---in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHGAD---PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence            467888888888888888888888763   44567788888888877653  677888888887764445777888886 


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC--HHHHHHHHHhCCCccccccccCccHHhHHHHhC--cHH
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR--IQVLVDLFRARPFAAYATTIWSETVLHLCVKHN--QLE  156 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~  156 (193)
                      |+..++.+++++|++.|.+. +..+..|+||||.|+..++  .+++++|++ .+.+++.+|..|+||||+|+..+  +.+
T Consensus       147 aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~  224 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVD  224 (446)
T ss_pred             HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHH
Confidence            55567788888888888877 7778888888888876544  578888887 66788888888889999888875  778


Q ss_pred             HHHHHHHhcCccccccccCCCCchHHHHHHhcCC
Q 029474          157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       157 ~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~  190 (193)
                      ++++|++ |++   ++.+|..|.||||+|+..++
T Consensus       225 iv~lLl~-gad---in~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        225 IINLLLP-STD---VNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HHHHHHc-CCC---CCCCCCCCCCHHHHHHHhCC
Confidence            8888875 666   88888889999998888765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.4e-34  Score=214.69  Aligned_cols=173  Identities=22%  Similarity=0.231  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHH-----------------------
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL-----------------------   60 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll-----------------------   60 (193)
                      +.+|||.|+..|+.++++.|++.|+   +++..|..|.||||+|+..|+.++++.|+                       
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~ga---dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGH---NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            3578999999999999999999886   44566888889999988876655444443                       


Q ss_pred             -----------------------------------------hcCCccccccccC-CCCHHHHHHHcCCHHHHHHHHhhCC
Q 029474           61 -----------------------------------------RRTPVLAGELDSR-RSSPLHMAAQKGYVEIVKELLQVNP   98 (193)
Q Consensus        61 -----------------------------------------~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~   98 (193)
                                                               +++..+ +..+.. |.||||+|+..|+.+++++|++.|+
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence                                                     333333 334555 8888888888888888888888888


Q ss_pred             CccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHh-CcHHHHHHHHHhcCccccccccCC-
Q 029474           99 DMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH-NQLEALKFLVSIMNDRDFLNAKDD-  176 (193)
Q Consensus        99 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~d~-  176 (193)
                      ++ +..+..|.||||.|+..++.+++++|++ .+.+++.+|..|+||||+|+.. ++.+++++|+++|++   ++.++. 
T Consensus       193 d~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad---vn~~~~~  267 (477)
T PHA02878        193 NV-NIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD---VNAKSYI  267 (477)
T ss_pred             CC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC---CCccCCC
Confidence            87 7778888888888888888888888887 5678888888888888888865 678888888888877   565554 


Q ss_pred             CCchHHHHH
Q 029474          177 YGMSILHLA  185 (193)
Q Consensus       177 ~g~tpl~~A  185 (193)
                      .|.||||+|
T Consensus       268 ~g~TpLh~A  276 (477)
T PHA02878        268 LGLTALHSS  276 (477)
T ss_pred             CCCCHHHHH
Confidence            566777766

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=198.28  Aligned_cols=170  Identities=15%  Similarity=0.081  Sum_probs=149.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCC-CCHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRR-SSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~l~~a   81 (193)
                      ++.||||.|+..|+.++++.|++.+++   ++.+|..|.||||+|+..|+.+++++|++++... +.++..| .||||+|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gad---vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~A  135 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHH
Confidence            457999999999999999999999974   4567889999999999999999999999999876 5567777 4899999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccH-HhHHHHhCcHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETV-LHLCVKHNQLEALKF  160 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~  160 (193)
                      +..|+.+++++|+++++...+  ...|.||||+|+..|+.++++.|++ .+.+++.++..|.|| ||+|+..|+.+++++
T Consensus       136 a~~g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHcCCHHHHHHHHhcCCcccc--cccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            999999999999998765411  1358999999999999999999998 567888999999987 999999999999999


Q ss_pred             HHHhcCccccccccCCCCchHHH
Q 029474          161 LVSIMNDRDFLNAKDDYGMSILH  183 (193)
Q Consensus       161 Ll~~g~~~~~~~~~d~~g~tpl~  183 (193)
                      |+++|++   ++.+|.+| +||+
T Consensus       213 Ll~~Ga~---in~~~~~~-~~l~  231 (284)
T PHA02791        213 LFKYDIN---IYSVNLEN-VLLD  231 (284)
T ss_pred             HHHCCCC---CccCcccC-ccCC
Confidence            9999999   88888844 7664

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=213.38  Aligned_cols=180  Identities=27%  Similarity=0.302  Sum_probs=124.6

Q ss_pred             hhHHHHH-----HHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHH--HcCChHHHHHHHhcCCccccccccCCCC
Q 029474            4 MESLLYE-----ASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAA--LRGHLDFAKEILRRTPVLAGELDSRRSS   76 (193)
Q Consensus         4 ~~~~L~~-----A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   76 (193)
                      +.+||+.     |+..|+.++++.|++.|+++   +..+..|.||||+|+  ..|+.+++++|++++... +..+..|.|
T Consensus        68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i---~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t  143 (480)
T PHA03100         68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV---NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGEN  143 (480)
T ss_pred             CcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC---CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCc
Confidence            3456666     66666666666666666533   345666677777777  667777777777766654 455666777


Q ss_pred             HHHHHHHcC--CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccC------ccHHhH
Q 029474           77 PLHMAAQKG--YVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS------ETVLHL  148 (193)
Q Consensus        77 ~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g------~t~l~~  148 (193)
                      |||+|+..+  +.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .+.++...+..|      .||+|.
T Consensus       144 ~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~  221 (480)
T PHA03100        144 LLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDIETLLFTIFETPLHI  221 (480)
T ss_pred             HHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCCCCCcHHHHHhHHHH
Confidence            777777777  677777777777766 5566667777777777777777777776 455666666666      677777


Q ss_pred             HHHhCc--HHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          149 CVKHNQ--LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       149 a~~~~~--~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      |+..++  .+++++|+++|++   ++.+|..|.||||+|+..++.+
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~d---in~~d~~g~TpL~~A~~~~~~~  264 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVP---INIKDVYGFTPLHYAVYNNNPE  264 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHH
Confidence            777777  7777777777776   7788888888888888887765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=7.9e-34  Score=208.81  Aligned_cols=179  Identities=27%  Similarity=0.307  Sum_probs=159.7

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccC-CCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTN-RHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      +++.++||+|+.+++++.+++|++++++++   ... .-+.||||+|+++|++.+|..|+++|+.+ +.+|..|.+++|.
T Consensus        76 ~~g~tlLHWAAiNNrl~v~r~li~~gadvn---~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHl  151 (600)
T KOG0509|consen   76 REGVTLLHWAAINNRLDVARYLISHGADVN---AIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHL  151 (600)
T ss_pred             cCCccceeHHHHcCcHHHHHHHHHcCCCcc---ccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHH
Confidence            367899999999999999999999999653   334 56889999999999999999999999998 8889999999999


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHH
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF  160 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (193)
                      |++.++.-++-+++.++.++ +..|..|+|||++|+..|....+..|++-+....-..+..|+||||+|+..|+..++.+
T Consensus       152 a~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  152 AAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKL  230 (600)
T ss_pred             HHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEeh
Confidence            99999999999999999888 88999999999999999998878888885544444445999999999999999999997


Q ss_pred             HHHhcCccccccccCCCCchHHHHHHhc
Q 029474          161 LVSIMNDRDFLNAKDDYGMSILHLAVAD  188 (193)
Q Consensus       161 Ll~~g~~~~~~~~~d~~g~tpl~~A~~~  188 (193)
                      |++.|++   .+..|.+|+||+++|.+.
T Consensus       231 l~~g~~~---~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  231 LLEGGAD---LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hhhcCCc---ccccccCCCCHHHHHHHh
Confidence            7776677   888999999999999765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=208.33  Aligned_cols=147  Identities=27%  Similarity=0.304  Sum_probs=133.9

Q ss_pred             ccCCC-CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 029474           35 VTNRH-HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLH  113 (193)
Q Consensus        35 ~~~~~-g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~  113 (193)
                      ..+.. |.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+..++.+++++|++.|+++ +..+..|.||||
T Consensus       162 ~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh  239 (477)
T PHA02878        162 MKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLH  239 (477)
T ss_pred             ccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            45566 999999999999999999999999886 678999999999999999999999999999998 888999999999


Q ss_pred             HHHHc-CCHHHHHHHHHhCCCccccccc-cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          114 MAAMK-GRIQVLVDLFRARPFAAYATTI-WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       114 ~a~~~-~~~~~~~~ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      +|+.. ++.+++++|++ .|.+++..+. .|.||||+|  .++.+++++|+++|++   ++..|..|.||||+|+..+
T Consensus       240 ~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad---in~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        240 ISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGAD---INSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHHc
Confidence            99976 78999999998 6678877765 799999999  5678999999999999   8999999999999999753

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-33  Score=209.74  Aligned_cols=183  Identities=19%  Similarity=0.170  Sum_probs=155.8

Q ss_pred             hhhHHHHHHHHh-----CCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC---ChHHHHHHHhcCCccccccccCC
Q 029474            3 RMESLLYEASVE-----GNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG---HLDFAKEILRRTPVLAGELDSRR   74 (193)
Q Consensus         3 ~~~~~L~~A~~~-----g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~   74 (193)
                      .+.|||+.|+..     +..++++.|++.|+   +++.+|..|.||||+|+..+   +.+++++|+++|+.+ +.++..|
T Consensus        70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga---diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g  145 (489)
T PHA02798         70 EYSTPLCTILSNIKDYKHMLDIVKILIENGA---DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDG  145 (489)
T ss_pred             CCCChHHHHHHhHHhHHhHHHHHHHHHHCCC---CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCC
Confidence            578999998764     67899999999997   45567889999999999875   689999999999887 7789999


Q ss_pred             CCHHHHHHHcCC---HHHHHHHHhhCCCccccccCCCCcHHHHHHHc----CCHHHHHHHHHhCC---------------
Q 029474           75 SSPLHMAAQKGY---VEIVKELLQVNPDMCLARDVDGRNPLHMAAMK----GRIQVLVDLFRARP---------------  132 (193)
Q Consensus        75 ~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~ll~~~~---------------  132 (193)
                      .||||+|+..++   .+++++|+++|.++....+..+.||+|.++..    ++.+++++|++.+.               
T Consensus       146 ~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~  225 (489)
T PHA02798        146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFME  225 (489)
T ss_pred             CcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHH
Confidence            999999999987   89999999999988333356789999988764    36778888776321               


Q ss_pred             -----------------------CccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          133 -----------------------FAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       133 -----------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                                             .+++.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+.++
T Consensus       226 ~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd---in~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        226 YLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD---INIITELGNTCLFTAFENE  302 (489)
T ss_pred             HHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc---ccccCCCCCcHHHHHHHcC
Confidence                                   24455677899999999999999999999999999   9999999999999999988


Q ss_pred             Ccc
Q 029474          190 QIE  192 (193)
Q Consensus       190 ~~e  192 (193)
                      +.+
T Consensus       303 ~~~  305 (489)
T PHA02798        303 SKF  305 (489)
T ss_pred             cHH
Confidence            764

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=203.80  Aligned_cols=176  Identities=16%  Similarity=0.200  Sum_probs=155.2

Q ss_pred             hHHHHHHHH--hCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            5 ESLLYEASV--EGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         5 ~~~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .++||.++.  .++.++++.|++.|+   +++.+|..|.||||+|++.|+.+++++|++++..+ +.+|..|.||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Ga---dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGY---SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHH
Confidence            467887664  457889999999997   45567899999999999999999999999999887 688999999999998


Q ss_pred             HcC--CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC--cHHHH
Q 029474           83 QKG--YVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN--QLEAL  158 (193)
Q Consensus        83 ~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~  158 (193)
                      ..+  ..+++++|+++|+++....+..|.|||+ |+..++.++++.|++ .+.+++..|..|+||||+|+..+  ..+++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            866  4789999999999985457889999997 666789999999998 67899999999999999998765  46999


Q ss_pred             HHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          159 KFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       159 ~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      ++|+++|++   ++.+|..|.||||+|+..+
T Consensus       192 ~~Ll~~Gad---in~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        192 SWMMKLGIS---PSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             HHHHHcCCC---CcccCCCCCCHHHHHHHcC
Confidence            999999999   8999999999999999876

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.2e-32  Score=205.10  Aligned_cols=182  Identities=21%  Similarity=0.256  Sum_probs=129.7

Q ss_pred             hhhHHHHHHHHhC-CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHH--HcCChHHHHHHHhcCCccccccccCCCCHHH
Q 029474            3 RMESLLYEASVEG-NITTLLQLLEQDPLILDKVVTNRHHETPLHVAA--LRGHLDFAKEILRRTPVLAGELDSRRSSPLH   79 (193)
Q Consensus         3 ~~~~~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~   79 (193)
                      .+.||||+|+..| ..++++.|++.|++   ++..+..|.||||+|+  ..++.+++++|++++..+ +.++..|.||||
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~---in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~  157 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLA  157 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHH
Confidence            4677888888888 47788888887763   3455677777777777  445667777777776665 455666666666


Q ss_pred             HHHHcC--CHHHHHHHHhhCCCcc----------------------------------ccccCCCCcHHHHHHHcCCH--
Q 029474           80 MAAQKG--YVEIVKELLQVNPDMC----------------------------------LARDVDGRNPLHMAAMKGRI--  121 (193)
Q Consensus        80 ~a~~~~--~~~~~~~ll~~~~~~~----------------------------------~~~~~~~~~~l~~a~~~~~~--  121 (193)
                      +|+..+  ..+++++|++.|.+..                                  +..+..|.||||+|+..++.  
T Consensus       158 ~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~  237 (471)
T PHA03095        158 VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKR  237 (471)
T ss_pred             HHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchH
Confidence            665543  3455555555554441                                  34445555555555555542  


Q ss_pred             HHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          122 QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       122 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      .++..+++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+.+|+.+
T Consensus       238 ~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad---~n~~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        238 SLVLPLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD---INAVSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCCHH
Confidence            34555565 5678888889999999999999999999999999998   8899999999999999988765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.5e-32  Score=207.66  Aligned_cols=173  Identities=21%  Similarity=0.197  Sum_probs=151.7

Q ss_pred             hhhHHHHHHHHh--CCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCC--hHHHHHHHhcCCccccccccCCCCHH
Q 029474            3 RMESLLYEASVE--GNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGH--LDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         3 ~~~~~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      .+.||||.|+..  ++.+++++|++.|+   +++.+|..|.||||+|++.|+  .++|++|+++|+.+ +.++..|.|||
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GA---DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPL  251 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGV---NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPI  251 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            578999998754  68999999999997   555678999999999999996  48999999999987 77899999999


Q ss_pred             HHH-------------------------------------HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH--cC
Q 029474           79 HMA-------------------------------------AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAM--KG  119 (193)
Q Consensus        79 ~~a-------------------------------------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~--~~  119 (193)
                      |+|                                     +..|+.+++++|+++|+++ +.++..|+||||+|+.  .+
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~  330 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNI  330 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCC
Confidence            975                                     3457788999999999998 7889999999999864  45


Q ss_pred             CHHHHHHHHHhCCCccccccccCccHHhHHHH--------------hCcHHHHHHHHHhcCccccccccCCCCchHHHH
Q 029474          120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVK--------------HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL  184 (193)
Q Consensus       120 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~  184 (193)
                      +.+++++|++ .|.+++.+|..|+||||+|+.              .++.+++++|+++|++   ++.+|..|.||||.
T Consensus       331 ~~eIVklLLe-~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD---In~kn~~G~TPLh~  405 (764)
T PHA02716        331 STDIIKLLHE-YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD---ITAVNCLGYTPLTS  405 (764)
T ss_pred             CchHHHHHHH-cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC---CCCcCCCCCChHHH
Confidence            7899999998 678999999999999999875              3688999999999999   89999999999994

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-31  Score=201.80  Aligned_cols=178  Identities=21%  Similarity=0.200  Sum_probs=138.7

Q ss_pred             hhhHHHHHHHHhC---CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC-ChHHHHHHHhcCCccccccccCCCCHH
Q 029474            3 RMESLLYEASVEG---NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG-HLDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         3 ~~~~~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      .+.||||.|+..|   +.++++.|++.|+   +++..+..|.||||+|+..| +.+++++|++++..+ +.++..|.|||
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga---din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpL  121 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGA---DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPL  121 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            4689999999999   9999999999997   45567889999999999999 599999999999886 77899999999


Q ss_pred             HHHH--HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC--CHHHHHHHHHhCCCccccccccCccHHhHHHHh--
Q 029474           79 HMAA--QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG--RIQVLVDLFRARPFAAYATTIWSETVLHLCVKH--  152 (193)
Q Consensus        79 ~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~--  152 (193)
                      |+|+  ..++.+++++|+++|+++ +..+..|.||||+++..+  +.+++++|++ .+.++...+..|+||||+++..  
T Consensus       122 h~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~~~~  199 (471)
T PHA03095        122 HVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLID-AGADVYAVDDRFRSLLHHHLQSFK  199 (471)
T ss_pred             HHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHHCC
Confidence            9999  556789999999999998 788889999999988765  5778888887 4445555566677777766654  


Q ss_pred             CcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       153 ~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      +..++++.|+++|++   ++.+|..|.||||+|+..+
T Consensus       200 ~~~~i~~~Ll~~g~~---~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        200 PRARIVRELIRAGCD---PAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             CcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence            455566555555554   4444444444444444443

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=202.79  Aligned_cols=184  Identities=16%  Similarity=0.188  Sum_probs=124.6

Q ss_pred             hhHHHHHHHH------hCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHc---CChHHHHHHHhcCCccccccccCC
Q 029474            4 MESLLYEASV------EGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALR---GHLDFAKEILRRTPVLAGELDSRR   74 (193)
Q Consensus         4 ~~~~L~~A~~------~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~   74 (193)
                      ++|||+.|+.      .|..++++.|++.|++   ++.++..|.||||.|+..   ++.+++++|+++|.++.+.++..|
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g  145 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGAD---INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRG  145 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCC
Confidence            3566666553      3556666666666653   344566666666665543   455666666666665433456666


Q ss_pred             CCHHHHHHHc--CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC----CHHHHHHHHHhC-----------------
Q 029474           75 SSPLHMAAQK--GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG----RIQVLVDLFRAR-----------------  131 (193)
Q Consensus        75 ~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~-----------------  131 (193)
                      .||||+|+..  ++.+++++|+++|+++....+..|.||||.++..+    +.+++++|++.+                 
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESF  225 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence            6666666543  45666666666666652224556666666665443    556666665532                 


Q ss_pred             --------------------CCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          132 --------------------PFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       132 --------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                                          +.+++.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..++.
T Consensus       226 ~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad---in~~d~~G~TpL~~A~~~~~~  302 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD---IYNVSKDGDTVLTYAIKHGNI  302 (494)
T ss_pred             HHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCH
Confidence                                134556677899999999999999999999999999   999999999999999999987


Q ss_pred             cC
Q 029474          192 EV  193 (193)
Q Consensus       192 ei  193 (193)
                      ++
T Consensus       303 ~i  304 (494)
T PHA02989        303 DM  304 (494)
T ss_pred             HH
Confidence            53

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.98  E-value=8.5e-31  Score=205.86  Aligned_cols=181  Identities=20%  Similarity=0.254  Sum_probs=111.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcc----------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL----------------   66 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~----------------   66 (193)
                      .+.||||.|+..|+.++++.|++.|++.   +..+..|.||||+|+..++.++++.|++.+...                
T Consensus       177 ~G~TpLh~Aa~~G~~~iv~~LL~~Gad~---n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~  253 (682)
T PHA02876        177 YCITPIHYAAERGNAKMVNLLLSYGADV---NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDL  253 (682)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCc---CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCH
Confidence            4678999999999999999999988743   344556666666666666666666555443211                


Q ss_pred             ------------ccccccCCCCHHHHHHHcCCH-HHHHHHHhhCCCccccccCCCCcHHHHHHHcC-CHHHHHHHHHhCC
Q 029474           67 ------------AGELDSRRSSPLHMAAQKGYV-EIVKELLQVNPDMCLARDVDGRNPLHMAAMKG-RIQVLVDLFRARP  132 (193)
Q Consensus        67 ------------~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~  132 (193)
                                  .+..+..|.||||+|+..++. +++++|++.|.++ +..+..|.||||+|+..| ..++++.|+. .+
T Consensus       254 ~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~g  331 (682)
T PHA02876        254 ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIM-LG  331 (682)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHH-cC
Confidence                        123345566677777666664 4666666666665 556666666666666665 3555555554 34


Q ss_pred             CccccccccCccHHhHHHHh-CcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          133 FAAYATTIWSETVLHLCVKH-NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       133 ~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      .+++..+..|.||||+|+.. +..+++++|++.|++   ++.+|..|.||||+|+..|+.
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad---in~~d~~G~TpLh~Aa~~~~~  388 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN---VNARDYCDKTPIHYAAVRNNV  388 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC---CccCCCCCCCHHHHHHHcCCH
Confidence            45555555555555555543 345555555555555   555555555555555555544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=8.7e-31  Score=202.38  Aligned_cols=173  Identities=17%  Similarity=0.199  Sum_probs=143.9

Q ss_pred             HHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHH--cCChHHHHHHHhcCCccccccccCCCCHHHHHHH-----
Q 029474           11 ASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAAL--RGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ-----   83 (193)
Q Consensus        11 A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~-----   83 (193)
                      |+..|+.+.++.|++.|++   ++.+|..|.||||+|+.  .++.+++++|+++|..+ +.+|..|.||||+|+.     
T Consensus       291 AA~~g~leiVklLLe~GAd---IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~  366 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVK---LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVV  366 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCc---eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhh
Confidence            4667899999999999974   45678999999999875  45789999999999876 7789999999999875     


Q ss_pred             ---------cCCHHHHHHHHhhCCCccccccCCCCcHHHHH----HHcCCHHHHHHHHHhCC------------------
Q 029474           84 ---------KGYVEIVKELLQVNPDMCLARDVDGRNPLHMA----AMKGRIQVLVDLFRARP------------------  132 (193)
Q Consensus        84 ---------~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a----~~~~~~~~~~~ll~~~~------------------  132 (193)
                               .++.+++++|+++|+++ +..+..|.||||.+    ...++.+++++|++.+.                  
T Consensus       367 ~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~  445 (764)
T PHA02716        367 NILDPETDNDIRLDVIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDD  445 (764)
T ss_pred             ccccccccccChHHHHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCc
Confidence                     36889999999999998 88999999999942    23466788888776321                  


Q ss_pred             ------------------------------------------CccccccccCccHHhHHHHhCcH-----HHHHHHHHhc
Q 029474          133 ------------------------------------------FAAYATTIWSETVLHLCVKHNQL-----EALKFLVSIM  165 (193)
Q Consensus       133 ------------------------------------------~~~~~~~~~g~t~l~~a~~~~~~-----~~~~~Ll~~g  165 (193)
                                                                .+.+..|..|+||||+|+..|+.     +++++|++.|
T Consensus       446 ~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~G  525 (764)
T PHA02716        446 TPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQ  525 (764)
T ss_pred             chhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCC
Confidence                                                      01123466899999999999876     4559999999


Q ss_pred             CccccccccCCCCchHHHHHHhcCCc
Q 029474          166 NDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       166 ~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      ++   ++.+|.+|.||||+|+++|+.
T Consensus       526 AD---IN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        526 YN---INIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             CC---CcccCCCCCCHHHHHHHcCCc
Confidence            99   999999999999999999976

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=4.4e-31  Score=198.85  Aligned_cols=187  Identities=25%  Similarity=0.309  Sum_probs=136.9

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCc--chhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcc--------------c
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDP--LILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL--------------A   67 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~--~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~--------------~   67 (193)
                      ++.|+|.|+++|..++.+.++.+.+  ....++..+..+.+|||.|+..|++++++.+++.+...              .
T Consensus       187 ~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv  266 (929)
T KOG0510|consen  187 GNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELV  266 (929)
T ss_pred             CCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHh
Confidence            3445555555555555555555110  11234455667788888888888888888888776432              1


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHH-hCCCccccccccCccHH
Q 029474           68 GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR-ARPFAAYATTIWSETVL  146 (193)
Q Consensus        68 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~t~l  146 (193)
                      +..|.+|.||||+|++.|+.+.++.|+..|.++ +.++.++.||||.|+..|++..++.|++ .+....+..|..|.|||
T Consensus       267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  267 NDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            334778888888888888888888888888888 7788888888888888888888888888 44556777788888888


Q ss_pred             hHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          147 HLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       147 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      |.|++.|+..+++.|++.|+....-...|.+|.||||+|+..|+.
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence            888888888888888888887311003488888888888888864

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.2e-30  Score=201.94  Aligned_cols=175  Identities=23%  Similarity=0.241  Sum_probs=91.2

Q ss_pred             hHHHHHHHHhC-CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC-ChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            5 ESLLYEASVEG-NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG-HLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         5 ~~~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .||||.|+..| +.+.++.|+..+++   ++..+..|.||||+|+..+ +.++++.|++.+..+ +.++..|.||||+|+
T Consensus       308 ~TpLh~Aa~~g~~~~~v~~Ll~~gad---in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa  383 (682)
T PHA02876        308 ETPLYLMAKNGYDTENIRTLIMLGAD---VNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAA  383 (682)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHcCCC---CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHH
Confidence            34444444443 23444444444331   2223444444444444432 344444444444443 444555555555555


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC-HHHHHHHHHhCCCccccccccCccHHhHHHHhC-cHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR-IQVLVDLFRARPFAAYATTIWSETVLHLCVKHN-QLEALKF  160 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~  160 (193)
                      ..++.+++++|++.|+++ +..+..|.||||+|+..++ ..+++.|++ .+.+++.+|..|+||||+|+..+ +.+++++
T Consensus       384 ~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~~iv~l  461 (682)
T PHA02876        384 VRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKLDVIEM  461 (682)
T ss_pred             HcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcHHHHHH
Confidence            555555555555555555 4445555555555554433 234455554 44556666666666666666654 4566666


Q ss_pred             HHHhcCccccccccCCCCchHHHHHHhc
Q 029474          161 LVSIMNDRDFLNAKDDYGMSILHLAVAD  188 (193)
Q Consensus       161 Ll~~g~~~~~~~~~d~~g~tpl~~A~~~  188 (193)
                      |+++|++   ++.+|..|.||+++|+.+
T Consensus       462 Ll~~Gad---~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        462 LLDNGAD---VNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHCCCC---CCCCCCCCCCHHHHHHHh
Confidence            6666666   666666666666666654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=6.7e-31  Score=197.87  Aligned_cols=178  Identities=28%  Similarity=0.318  Sum_probs=160.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhh------------hhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccc
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILD------------KVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL   70 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~------------~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   70 (193)
                      ++.+|||.|+..|++++++.+++.++...+            ++..|.+|.||||+|++.|+++++..|+..|... +.+
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~k  302 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSK  302 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-ccc
Confidence            678999999999999999999998765422            2356889999999999999999999999999987 788


Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccc--cccccCccHHh
Q 029474           71 DSRRSSPLHMAAQKGYVEIVKELLQ-VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY--ATTIWSETVLH  147 (193)
Q Consensus        71 ~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~g~t~l~  147 (193)
                      +.++.||||.|+..|+..+++.|++ .+....+..|..|+||||.|+.+|+..+++.|+..+....+  ..|.+|+||||
T Consensus       303 n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH  382 (929)
T KOG0510|consen  303 NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALH  382 (929)
T ss_pred             CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhh
Confidence            9999999999999999999999999 66666688899999999999999999999999985544443  45999999999


Q ss_pred             HHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHH
Q 029474          148 LCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL  184 (193)
Q Consensus       148 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~  184 (193)
                      .|+..|+..+++.|+.+|++   +..++..|.|++++
T Consensus       383 ~Aa~~g~~~av~~Li~~Ga~---I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  383 LAAKYGNTSAVQKLISHGAD---IGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHhccHHHHHHHHHcCCc---eeeccccccccccc
Confidence            99999999999999999999   89999999999984

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.9e-31  Score=190.43  Aligned_cols=184  Identities=24%  Similarity=0.314  Sum_probs=162.3

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhh------hhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCC
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILD------KVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSS   76 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~------~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   76 (193)
                      ++.+||.+|+++|+.+.|++|+++......      .+--..+|-+||-.|+..||+++|+.|++++..+ +.......|
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNSt  119 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNST  119 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCc
Confidence            467999999999999999999995321111      1122356889999999999999999999999776 666677779


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHH
Q 029474           77 PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE  156 (193)
Q Consensus        77 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (193)
                      ||-.||.-|+.+++++|+++|+++ ++.|+.|.|.|+.|+..|+.+++++|++ .+.+++.++..|+|+||.++..|+++
T Consensus       120 PLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCchHHHhhhhcccHH
Confidence            999999999999999999999999 9999999999999999999999999998 56799999999999999999999999


Q ss_pred             HHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       157 ~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++++|+.+|+.   + .+|..|.|||..|+..|+.+|
T Consensus       198 ivq~Ll~~ga~---i-~~d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  198 IVQLLLKHGAK---I-DVDGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             HHHHHHhCCce---e-eecCCCCchHHHHhhhcchHH
Confidence            99999999987   4 577789999999999998653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=196.31  Aligned_cols=179  Identities=17%  Similarity=0.125  Sum_probs=148.0

Q ss_pred             hhhHHHHHHHHh---CCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChH----HHHHHHhcCCccccccccCCC
Q 029474            3 RMESLLYEASVE---GNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLD----FAKEILRRTPVLAGELDSRRS   75 (193)
Q Consensus         3 ~~~~~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~   75 (193)
                      .++||||+|+..   |+.+.++.|++.|+++   +..+..|.||||.|+..|+.+    +++.|++.+... +..+  ..
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v---~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~  104 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNP---LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FN  104 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc---cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cc
Confidence            578999997555   8899999999999854   467889999999999999854    556787765432 2222  23


Q ss_pred             CHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH--HcCCHHHHHHHHHhCCCccccccc---cC--------
Q 029474           76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA--MKGRIQVLVDLFRARPFAAYATTI---WS--------  142 (193)
Q Consensus        76 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~---~g--------  142 (193)
                      +++++|+..++.+++++|+++|+++ +.++..|+||||.++  ..|+.+++++|++ .|++++..+.   .|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCccccccccccccccccccc
Confidence            6778899999999999999999999 889999999999654  4689999999998 5667765432   33        


Q ss_pred             ---ccHHhHHHH-----------hCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          143 ---ETVLHLCVK-----------HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       143 ---~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                         .||||+|+.           .++.+++++|+++|++   ++.+|..|.||||+|+.+|+.+
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad---vn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK---PSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC---cccCCCCCCcHHHHHHHcCCCc
Confidence               599999986           4589999999999999   9999999999999999999863

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.97  E-value=1.6e-29  Score=201.43  Aligned_cols=175  Identities=19%  Similarity=0.224  Sum_probs=158.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.++|+.||..|+.+.++.|++.|.   +++..|..|.||||+|+..|+.++++.|++++.++ +.+|..|.||||+|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~---d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKL---DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            35689999999999999999999997   45678999999999999999999999999998886 778999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..|+.+++++|++.+...   ....+.++||.|+..|+.++++.|++ .+.+++..|..|+||||+|+..|+.+++++|+
T Consensus       600 ~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        600 SAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            999999999999877654   23457799999999999999999998 67799999999999999999999999999999


Q ss_pred             HhcCccccccccCCCC-chHHHHHHhc
Q 029474          163 SIMNDRDFLNAKDDYG-MSILHLAVAD  188 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g-~tpl~~A~~~  188 (193)
                      ++|++   ++..|..| .||++++...
T Consensus       676 ~~GAd---v~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        676 MNGAD---VDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HcCCC---CCCCCCCCCCCHHHHHHHH
Confidence            99999   88889888 8999887653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.9e-29  Score=183.84  Aligned_cols=174  Identities=9%  Similarity=-0.037  Sum_probs=153.3

Q ss_pred             HHHHhCCHHHHHHHHhcCcchhh---hhccCCCCCcHHHHHHH--cCChHHHHHHHhcCCccccccccCCCCHHHHHHHc
Q 029474           10 EASVEGNITTLLQLLEQDPLILD---KVVTNRHHETPLHVAAL--RGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus        10 ~A~~~g~~~~~~~ll~~~~~~~~---~~~~~~~g~~~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      .|+..+..++++.|+.++.++.-   ....+..++|+||+++.  .|+.++|++|+++|+.+ +.  .++.||+|+|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHc
Confidence            78999999999999999987531   11356779999999999  89999999999999987 33  3558999999999


Q ss_pred             CCHHHHHHHHhhCCCcccccc-----CCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHH
Q 029474           85 GYVEIVKELLQVNPDMCLARD-----VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK  159 (193)
Q Consensus        85 ~~~~~~~~ll~~~~~~~~~~~-----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (193)
                      ++.+++++|+++|.+..+..+     ..+.+++|.+...++.+++++|++ .|++++.++..|.||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999975433331     347789999999999999999998 67899999999999999999999999999


Q ss_pred             HHHHhcCccccccccCCCCchHHHHHHhcCC
Q 029474          160 FLVSIMNDRDFLNAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       160 ~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~  190 (193)
                      +|+++|++   ++.+|..|.||||+|+..|+
T Consensus       239 lLL~~GAd---IN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        239 WLLENGAN---VNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHHCCCC---CCCcCCCCCCHHHHHHHcCC
Confidence            99999999   99999999999999999885

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-28  Score=187.31  Aligned_cols=183  Identities=17%  Similarity=0.162  Sum_probs=153.9

Q ss_pred             hhHHHHHHHHh--CCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHc-----CChHHHHHHHhcCCccccccccCCCC
Q 029474            4 MESLLYEASVE--GNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALR-----GHLDFAKEILRRTPVLAGELDSRRSS   76 (193)
Q Consensus         4 ~~~~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~~   76 (193)
                      +.++++.+..+  ++.++++.|++.|+   +++..+..|.||||.|+..     ++.+++++|+++|..+ +.++..|.|
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Ga---dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~T  111 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGA---NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGET  111 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCC---CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCc
Confidence            34566544444  48999999999998   4556789999999999864     6689999999999987 788999999


Q ss_pred             HHHHHHHcC---CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC---HHHHHHHHHhCCCccccc-cccCccHHhHH
Q 029474           77 PLHMAAQKG---YVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR---IQVLVDLFRARPFAAYAT-TIWSETVLHLC  149 (193)
Q Consensus        77 ~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~-~~~g~t~l~~a  149 (193)
                      |||+|+..+   +.+++++|+++|+++ +..+..|.||||+|+..++   .+++++|++ .|.+++.. +..|.||||.+
T Consensus       112 pLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~-~gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        112 PLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE-KGVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             HHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHH-hCCCcccccCcCCCcHHHHH
Confidence            999999975   689999999999998 8899999999999999987   999999998 56777766 45789999998


Q ss_pred             HHh----CcHHHHHHHHHhcCccc------------------------------------cccccCCCCchHHHHHHhcC
Q 029474          150 VKH----NQLEALKFLVSIMNDRD------------------------------------FLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       150 ~~~----~~~~~~~~Ll~~g~~~~------------------------------------~~~~~d~~g~tpl~~A~~~~  189 (193)
                      +..    ++.+++++|+++|++..                                    +++.+|..|.||||+|+.+|
T Consensus       190 ~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~  269 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHN  269 (489)
T ss_pred             HHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcC
Confidence            764    47899999998886421                                    25668889999999999998


Q ss_pred             Ccc
Q 029474          190 QIE  192 (193)
Q Consensus       190 ~~e  192 (193)
                      +.+
T Consensus       270 ~~~  272 (489)
T PHA02798        270 NRK  272 (489)
T ss_pred             cHH
Confidence            765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-28  Score=185.72  Aligned_cols=184  Identities=17%  Similarity=0.203  Sum_probs=151.9

Q ss_pred             hhhHHHHHHHHhC--CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC------ChHHHHHHHhcCCccccccccCC
Q 029474            3 RMESLLYEASVEG--NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG------HLDFAKEILRRTPVLAGELDSRR   74 (193)
Q Consensus         3 ~~~~~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~------~~~~v~~Ll~~~~~~~~~~~~~~   74 (193)
                      ++.++|+.++..+  +.++++.|++.|+++.   ..+ .+.||||.|+..+      +.+++++|+++|+.+ +.++..|
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn---~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g  108 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVN---YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNG  108 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCcc---CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCC
Confidence            4678887666553  6899999999998653   344 5799999998754      468999999999987 7789999


Q ss_pred             CCHHHHHHHc---CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc--CCHHHHHHHHHhCCCcccc-ccccCccHHhH
Q 029474           75 SSPLHMAAQK---GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK--GRIQVLVDLFRARPFAAYA-TTIWSETVLHL  148 (193)
Q Consensus        75 ~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~-~~~~g~t~l~~  148 (193)
                      .||||.|+..   ++.+++++|+++|+++.+..+..|.||||+|+..  ++.+++++|++ .|++++. .+..|.||||.
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccccccCCChHHH
Confidence            9999988765   6789999999999998557788999999998764  68999999998 5667776 67899999999


Q ss_pred             HHHhC----cHHHHHHHHHhcCccc-----------------------------------cccccCCCCchHHHHHHhcC
Q 029474          149 CVKHN----QLEALKFLVSIMNDRD-----------------------------------FLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       149 a~~~~----~~~~~~~Ll~~g~~~~-----------------------------------~~~~~d~~g~tpl~~A~~~~  189 (193)
                      |+..+    +.+++++|+++|++..                                   +++.+|..|.||||+|+..+
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~  267 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD  267 (494)
T ss_pred             HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence            98764    8999999999998632                                   13566778999999999988


Q ss_pred             Ccc
Q 029474          190 QIE  192 (193)
Q Consensus       190 ~~e  192 (193)
                      +.+
T Consensus       268 ~~~  270 (494)
T PHA02989        268 NYE  270 (494)
T ss_pred             CHH
Confidence            765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=161.01  Aligned_cols=147  Identities=16%  Similarity=0.134  Sum_probs=126.9

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC--CHHHHHHHHhhCCCcccccc-CCCCcHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG--YVEIVKELLQVNPDMCLARD-VDGRNPLH  113 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~-~~~~~~l~  113 (193)
                      ...+.+|||.|+..|+.++|+.|++..    +..+..|.||||+|+..+  +.+++++|+++|+++ +..+ ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHH
Confidence            345789999999999999999999752    456889999999999865  899999999999999 5555 58999999


Q ss_pred             HHHHc---CCHHHHHHHHHhCCCccccccccCccHHhHHHHh--CcHHHHHHHHHhcCccccccccCCCCchHHHH-HHh
Q 029474          114 MAAMK---GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH--NQLEALKFLVSIMNDRDFLNAKDDYGMSILHL-AVA  187 (193)
Q Consensus       114 ~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~-A~~  187 (193)
                      +|+..   ++.+++++|++ .+.+++.+|..|.||||+|+..  ++.+++++|+++|++   ++.+|..|.||||. |+.
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~t~Lh~~a~~  168 (209)
T PHA02859         93 HYLSFNKNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNNNILYSYILF  168 (209)
T ss_pred             HHHHhCccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCCcHHHHHHHh
Confidence            98764   47999999998 7789999999999999999864  689999999999999   89999999999996 555


Q ss_pred             cCCcc
Q 029474          188 DKQIE  192 (193)
Q Consensus       188 ~~~~e  192 (193)
                      .++.+
T Consensus       169 ~~~~~  173 (209)
T PHA02859        169 HSDKK  173 (209)
T ss_pred             cCCHH
Confidence            66554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.6e-28  Score=174.46  Aligned_cols=181  Identities=21%  Similarity=0.302  Sum_probs=157.1

Q ss_pred             HHHHHHhCCHHHHHHHHhcCcch--hhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccc--------ccCCCCH
Q 029474            8 LYEASVEGNITTLLQLLEQDPLI--LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL--------DSRRSSP   77 (193)
Q Consensus         8 L~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------~~~~~~~   77 (193)
                      .+.|++.|.+..+..|+-...+.  .+..-...+|.|||..|+++||.++|++|+++.....++.        ...|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            44788999999998888775532  2222335668899999999999999999999654332222        3567889


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      |-.|+..|+.++++.|+++|+++ +.....+.|||.-||..|+++++++|++ .+.+++..+..|.|.|++||..|+.+|
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I  165 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDI  165 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHH
Confidence            98899999999999999999888 7778888899999999999999999997 788999999999999999999999999


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       158 ~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++|++.|+|   +|.++..|.|+||.|++.|+.||
T Consensus       166 ~qyLle~gAD---vn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  166 AQYLLEQGAD---VNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             HHHHHHhCCC---cchhcccCchHHHhhhhcccHHH
Confidence            9999999999   99999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=172.95  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=141.1

Q ss_pred             hhhHHHHHHHH--hCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccc-----ccCCC
Q 029474            3 RMESLLYEASV--EGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL-----DSRRS   75 (193)
Q Consensus         3 ~~~~~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-----~~~~~   75 (193)
                      ..+++||.++.  .|+.+++++|+++|+++.   .  .++.||||.|+..++.+++++|+++|....+..     +..+.
T Consensus       115 ~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn---~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY---K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             cccHHHHHHHHhcCCCHHHHHHHHHCCCCCC---C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            46899999999  999999999999999652   2  345899999999999999999999997543332     23477


Q ss_pred             CHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCc-
Q 029474           76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ-  154 (193)
Q Consensus        76 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-  154 (193)
                      +++|.|...++.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+ 
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~  267 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSV  267 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCc
Confidence            8999999999999999999999999 8899999999999999999999999998 678999999999999999999884 


Q ss_pred             -------HHHHHHHHHhcCc
Q 029474          155 -------LEALKFLVSIMND  167 (193)
Q Consensus       155 -------~~~~~~Ll~~g~~  167 (193)
                             .+++++|+++|++
T Consensus       268 ~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        268 IARRETHLKILEILLREPLS  287 (437)
T ss_pred             ccccccHHHHHHHHHhCCCC
Confidence                   6999999999987

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=1.4e-27  Score=188.77  Aligned_cols=182  Identities=25%  Similarity=0.288  Sum_probs=163.0

Q ss_pred             hhhHHHHHHHHhC-CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            3 RMESLLYEASVEG-NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      .+.|++|.|++.| ..+....++..+.   +++.....|+||||.|...|+.+.++.+++.+... +.....+.+++|.+
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~---~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla  514 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGA---DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLA  514 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCC---CcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhhhh
Confidence            4578999999999 6666666666665   55567888999999999999999999999888554 55678899999999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      ...+....++.++++|.+. ...+..+.||||.|+..|+..++++|++ .+.+++.++..|+||||.||..|+.+|+++|
T Consensus       515 ~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LL  592 (1143)
T KOG4177|consen  515 ADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELL  592 (1143)
T ss_pred             hhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHH
Confidence            9999999999999999988 7888899999999999999999999998 7889999999999999999999999999999


Q ss_pred             HHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++|++   +|..|.+|.|||++|++.|++++
T Consensus       593 lk~GA~---vna~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  593 LKHGAS---VNAADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             HHcCCC---CCcccccCcchhHHHHHhcccch
Confidence            999999   99999999999999999998864

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=177.02  Aligned_cols=178  Identities=14%  Similarity=0.065  Sum_probs=142.4

Q ss_pred             hhhHHHHHHHHhC---CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC--ChHHHHHHHhcCCcc-ccccccCCCC
Q 029474            3 RMESLLYEASVEG---NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG--HLDFAKEILRRTPVL-AGELDSRRSS   76 (193)
Q Consensus         3 ~~~~~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~v~~Ll~~~~~~-~~~~~~~~~~   76 (193)
                      .|+||||+|+..|   +.++++.|+++|++   ++.+|..|.||||+|+..+  +.++|++|++.+... .+..+..+.+
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAd---in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~  116 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVE---RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDF  116 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhCCCC---CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCc
Confidence            5899999999997   59999999999985   4567999999999999977  799999999997533 2335666889


Q ss_pred             HHHHHHH--cCCHHHHHHHHh-hCCCcccccc----CCCCcHHHHHHHcCCHHHHHHHHHhCCCccc-------cccccC
Q 029474           77 PLHMAAQ--KGYVEIVKELLQ-VNPDMCLARD----VDGRNPLHMAAMKGRIQVLVDLFRARPFAAY-------ATTIWS  142 (193)
Q Consensus        77 ~l~~a~~--~~~~~~~~~ll~-~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-------~~~~~g  142 (193)
                      ||+.++.  +++.+++++|++ .+.++....+    ..|.+|++++...++.+++++|++. |++++       ..+..+
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~-g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS-ECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc-CCcccccccccccccCCc
Confidence            9999888  888999999997 5556522212    3789999999999999999999994 55663       234444


Q ss_pred             ccH-HhHH------HHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 029474          143 ETV-LHLC------VKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA  187 (193)
Q Consensus       143 ~t~-l~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~  187 (193)
                      .+| ||++      ...+..+++++|+++|++   ++.+|..|.||||++..
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad---IN~kd~~G~TpLh~~~~  244 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVS---IHGRDEGGSLPIQYYWS  244 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHH
Confidence            444 4433      345689999999999999   99999999999996443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=4.6e-27  Score=163.13  Aligned_cols=174  Identities=17%  Similarity=0.192  Sum_probs=147.2

Q ss_pred             CHHHHHHHHhcCcc----h--hhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHc-----
Q 029474           16 NITTLLQLLEQDPL----I--LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK-----   84 (193)
Q Consensus        16 ~~~~~~~ll~~~~~----~--~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-----   84 (193)
                      +.+.|...+.....    +  .-+++.|.+|+|+||||+.+++|++|+.|++.+....+.++.-|+||+++++..     
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            45555555544322    1  234567999999999999999999999999999888889999999999998764     


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474           85 GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus        85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      ...+++..|+..|... -..-..|+|+|.+|+.+|+.++++.|+. .+.+++..|.+|.|+|+.||.+|+.+++++|+..
T Consensus       318 ~d~~vV~~LF~mgnVN-aKAsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  318 ADRTVVERLFKMGDVN-AKASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhHHHHHHHHhccCcc-hhhhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            3578889999887543 4456689999999999999999999998 7889999999999999999999999999999974


Q ss_pred             cCccccccccCCCCchHHHHHHhcCCccC
Q 029474          165 MNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       165 g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                        ..+++...|.+|.|+|.+|...|+-||
T Consensus       396 --p~cd~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  396 --PSCDISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             --CcccceeecCCCchhhhhHHhcCchHH
Confidence              344588999999999999999999875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=7.5e-26  Score=148.33  Aligned_cols=144  Identities=19%  Similarity=0.175  Sum_probs=123.9

Q ss_pred             hhhccCCCCCcHHHHHHHcCCh----HHHHHHHhcCCccccccccCCCCHHHHHHHcCCHH---HHHHHHhhCCCccccc
Q 029474           32 DKVVTNRHHETPLHVAALRGHL----DFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVE---IVKELLQVNPDMCLAR  104 (193)
Q Consensus        32 ~~~~~~~~g~~~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~  104 (193)
                      +++..+.++.++||.|++.|+.    +++++|.+.+... +.++..|.||||+|+..++.+   ++++|+++|.++ +..
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~   89 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NAR   89 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCC
Confidence            4445667788999999999998    5666777777665 677899999999999998765   489999999998 667


Q ss_pred             c-CCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCch
Q 029474          105 D-VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMS  180 (193)
Q Consensus       105 ~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~t  180 (193)
                      + ..|.||||+|+..++.+++++|+...+.+++.++..|.||||+|+..++.+++++|+++|++   ++.++..|.+
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~  163 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGLS  163 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCcc
Confidence            6 58999999999999999999999656788999999999999999999999999999999998   7777777653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=5.4e-26  Score=180.21  Aligned_cols=187  Identities=24%  Similarity=0.272  Sum_probs=128.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHH-HHHHcCChHHHHHHHhcCCcc---------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLH-VAALRGHLDFAKEILRRTPVL---------------   66 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~-~A~~~~~~~~v~~Ll~~~~~~---------------   66 (193)
                      ..+..|+.|+..|+.+.++.+++..+ ..+++..|..|.|||| .|+..++.++++.|++.+...               
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~-~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPK-KLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYV   94 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcccc-ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence            45677888888888888888887733 1245556777888888 777777778888777766200               


Q ss_pred             -------------c-------------cccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccc--------------cC
Q 029474           67 -------------A-------------GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLAR--------------DV  106 (193)
Q Consensus        67 -------------~-------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------~~  106 (193)
                                   .             ......|.||||+|+..|+.+++++|+++|+++ +..              ..
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~  173 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFY  173 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCccc
Confidence                         0             001134778888888888888888888877776 322              12


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC---------cHHHHHHHHHhcCccccc----cc
Q 029474          107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN---------QLEALKFLVSIMNDRDFL----NA  173 (193)
Q Consensus       107 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~~~~----~~  173 (193)
                      .|.+|||.|+..++.++++.|++ .+.+++..|..|+||||+|+..+         ...+.+++++.++.....    +.
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i  252 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI  252 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhh
Confidence            47778888888888888887776 55677777777888888877765         234556666665553223    56


Q ss_pred             cCCCCchHHHHHHhcCCcc
Q 029474          174 KDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       174 ~d~~g~tpl~~A~~~~~~e  192 (193)
                      .|..|.||||+|+..|+.+
T Consensus       253 ~N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       253 LNHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             cCCCCCCchhhhhhcCCcc
Confidence            6778888888888777765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2e-25  Score=178.09  Aligned_cols=149  Identities=24%  Similarity=0.323  Sum_probs=135.0

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                      +..+.++|+.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|.++ +..|..|.||||.|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            345678999999999999999999999887 778999999999999999999999999999998 888999999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..|+.++++.|+. .+....  ...+.++||.|+..|+.++++.|+++|++   ++.+|..|.||||+|+..|+.++
T Consensus       600 ~~g~~~iv~~L~~-~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad---in~~d~~G~TpLh~A~~~g~~~i  670 (823)
T PLN03192        600 SAKHHKIFRILYH-FASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAMAEDHVDM  670 (823)
T ss_pred             HhCCHHHHHHHHh-cCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCcHHH
Confidence            9999999999997 333332  34577999999999999999999999999   89999999999999999998763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=5.7e-27  Score=185.29  Aligned_cols=184  Identities=32%  Similarity=0.381  Sum_probs=139.1

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      +++.+|++.|+.+|..+.++.++..+..   ++..+..|.||||.|+.+++.++|+.+++++... +..+..|+|++|.|
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~---~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhva  447 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEAGAD---PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVA  447 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhccCC---cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhh
Confidence            3567888888888988888888888874   4456666777777777777777777777666665 55566666667766


Q ss_pred             HHcC-CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHh------------------------------
Q 029474           82 AQKG-YVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA------------------------------  130 (193)
Q Consensus        82 ~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~------------------------------  130 (193)
                      +..+ ..++...+++.+.+. +..-..|.||||.|...|+.+++..+++.                              
T Consensus       448 a~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  448 AKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             hhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH
Confidence            6666 556666666666665 55566666666666666666665555442                              


Q ss_pred             --CCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          131 --RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       131 --~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                        .+...+.++..|.||||.||..|+.++|++|+++|++   ++.+++.|+||||.|+..|+.+|
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCCChhhHHHHcChHHH
Confidence              3466667777899999999999999999999999999   99999999999999999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=9.3e-25  Score=143.77  Aligned_cols=131  Identities=20%  Similarity=0.259  Sum_probs=115.4

Q ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHhcC-----CccccccccCCCCHHHHHHHcCC----HHHHHHHHhhCCCccccccC
Q 029474           36 TNRHHETPLHVAALRGHLDFAKEILRRT-----PVLAGELDSRRSSPLHMAAQKGY----VEIVKELLQVNPDMCLARDV  106 (193)
Q Consensus        36 ~~~~g~~~L~~A~~~~~~~~v~~Ll~~~-----~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~  106 (193)
                      ++..|.||||+|++.|+.++++.|+...     ....+.+|..|.||||+|+..|+    .+++++|++.|.++ +.++.
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~   95 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEM   95 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCc
Confidence            4678999999999999999999986432     12346789999999999999998    58899999999998 66664


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          107 -DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       107 -~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                       .|.||||+|+..++.+++++|++..+.+++..+..|+||||+|+..++.+++++|+++++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             8999999999999999999999756788999999999999999999999999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=165.73  Aligned_cols=140  Identities=14%  Similarity=0.080  Sum_probs=118.4

Q ss_pred             HHHHHHHcC---ChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC----HHHHHHHHhhCCC-ccccccCCCCcHHHH
Q 029474           43 PLHVAALRG---HLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY----VEIVKELLQVNPD-MCLARDVDGRNPLHM  114 (193)
Q Consensus        43 ~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~-~~~~~~~~~~~~l~~  114 (193)
                      .||.-..++   +.+++++|+++|+.. +. +..|.||||+|+..++    .+++++|+++|++ ..+.++..|.||||.
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATM-DK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCC-Cc-CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhH
Confidence            677777766   579999999999988 44 4789999999988875    8999999999973 227788899999984


Q ss_pred             ---HHHcC---------CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCC-CCchH
Q 029474          115 ---AAMKG---------RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD-YGMSI  181 (193)
Q Consensus       115 ---a~~~~---------~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~-~g~tp  181 (193)
                         +...+         ..+++++|+. .+++++.+|..|.||||+|+..++.+++++|+++|++   ++.+|. .|.||
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd---IN~~d~~~g~Ta  499 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS---VNTTSRSIINTA  499 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCcCCcCH
Confidence               33222         2356899997 7789999999999999999999999999999999999   899997 59999


Q ss_pred             HHHHHhc
Q 029474          182 LHLAVAD  188 (193)
Q Consensus       182 l~~A~~~  188 (193)
                      ||+|+..
T Consensus       500 L~~Aa~~  506 (672)
T PHA02730        500 IQKSSYR  506 (672)
T ss_pred             HHHHHHh
Confidence            9999874

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.3e-24  Score=167.12  Aligned_cols=176  Identities=16%  Similarity=0.097  Sum_probs=140.0

Q ss_pred             hhhHHHHHHHHhCCHH----HHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHH
Q 029474            3 RMESLLYEASVEGNIT----TLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~----~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      .+.||||+|+..|+++    +++.|++.+... +  ..+  ...++++|+..++.++|++|+++|..+ +.++..|.|||
T Consensus        67 ~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n--~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L  140 (661)
T PHA02917         67 RQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-N--IND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVI  140 (661)
T ss_pred             CCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-C--CCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHH
Confidence            5789999999999865    456777654321 1  222  236788899999999999999999987 78899999999


Q ss_pred             HHHH--HcCCHHHHHHHHhhCCCcccccc---CCC-----------CcHHHHHHH-----------cCCHHHHHHHHHhC
Q 029474           79 HMAA--QKGYVEIVKELLQVNPDMCLARD---VDG-----------RNPLHMAAM-----------KGRIQVLVDLFRAR  131 (193)
Q Consensus        79 ~~a~--~~~~~~~~~~ll~~~~~~~~~~~---~~~-----------~~~l~~a~~-----------~~~~~~~~~ll~~~  131 (193)
                      |.++  ..++.+++++|+++|+++ +..+   ..|           .||||+|+.           .++.+++++|++ .
T Consensus       141 ~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~  218 (661)
T PHA02917        141 ENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-H  218 (661)
T ss_pred             HHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-C
Confidence            9654  568999999999999988 4333   233           599999986           458899999998 6


Q ss_pred             CCccccccccCccHHhHHHHhCcH--HHHHHHHHhcCcccc-ccccCCCCchHHHHHHh
Q 029474          132 PFAAYATTIWSETVLHLCVKHNQL--EALKFLVSIMNDRDF-LNAKDDYGMSILHLAVA  187 (193)
Q Consensus       132 ~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~~~~-~~~~d~~g~tpl~~A~~  187 (193)
                      |.+++.+|..|.||||+|+..|+.  +++++|++ |++... ....|..|.+|+++|+.
T Consensus       219 Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        219 GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHH
Confidence            789999999999999999999985  89999975 776211 12577788999999983

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1e-25  Score=146.80  Aligned_cols=176  Identities=23%  Similarity=0.213  Sum_probs=142.2

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      +-+.++.++-+|+...+...+..+.....   .+-.+++|+.+++...+.+.+..+.++.   .+..|+.|.|||.||+.
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~~rgne---vs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa  169 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNGARGNE---VSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAA  169 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeecccccCCc---cccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHh
Confidence            44556666666666666666666654433   3555777777777777766665555433   35668999999999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .|+..++++|++.|+++ ........++|.+|+.-|..++++.|+. +..+++.-|.+|-|||-+|++.++.+|++.|++
T Consensus       170 ~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~  247 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN  247 (296)
T ss_pred             cCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHHh
Confidence            99999999999999988 6777788899999999999999999997 777999999999999999999999999999999


Q ss_pred             hcCccccccccCCCCchHHHHHHhcCC
Q 029474          164 IMNDRDFLNAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       164 ~g~~~~~~~~~d~~g~tpl~~A~~~~~  190 (193)
                      .|++   ++..+..|.+++..|+..|+
T Consensus       248 sGAd---~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  248 SGAD---VTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             cCCC---cccccccCCcHHHHHHHhhh
Confidence            9999   88999999999999998775

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=3.2e-25  Score=144.50  Aligned_cols=167  Identities=20%  Similarity=0.189  Sum_probs=148.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHc
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      -+|+.+++...+++.+..+.+.-     ++..|..|+|||.+|+.+|++++|++|++.|+.+ ....+...++|..|++.
T Consensus       130 ~s~~slsVhql~L~~~~~~~~n~-----VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~g  203 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVNNK-----VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRG  203 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhhcc-----ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcC
Confidence            47888999988887776665543     4457899999999999999999999999999987 66688889999999999


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474           85 GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus        85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      |..++++.|+..+.++ +..|+.|-|||.+|++-++.++++.|+. .|.+++.-+..|.+++..|+..|+. +++..++.
T Consensus       204 gytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  204 GYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             ChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            9999999999999999 8999999999999999999999999998 7889999999999999999999998 77888876


Q ss_pred             cCccccccccCCCCchHHH
Q 029474          165 MNDRDFLNAKDDYGMSILH  183 (193)
Q Consensus       165 g~~~~~~~~~d~~g~tpl~  183 (193)
                      -+.   ...+|+.-++|+|
T Consensus       281 h~l---kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  281 HAL---KLCQDSEKRTPLH  296 (296)
T ss_pred             HHH---HHhhcccCCCCCC
Confidence            555   6788888888875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.7e-23  Score=158.27  Aligned_cols=177  Identities=11%  Similarity=0.108  Sum_probs=145.2

Q ss_pred             hhhHHHHHHHHhC-------CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcC--ChHHHHHHHhcCCc--------
Q 029474            3 RMESLLYEASVEG-------NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRG--HLDFAKEILRRTPV--------   65 (193)
Q Consensus         3 ~~~~~L~~A~~~g-------~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~v~~Ll~~~~~--------   65 (193)
                      .+.||||+|+..+       +.++++.|+++|+++   +..|..|.||||+|+.+.  +.|+++.|++....        
T Consensus       174 ~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~---~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        174 MGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM---RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc---CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            5899999999999       899999999999854   446888999999999999  67777777753110        


Q ss_pred             -------------cc-----------------------------------------------------------------
Q 029474           66 -------------LA-----------------------------------------------------------------   67 (193)
Q Consensus        66 -------------~~-----------------------------------------------------------------   67 (193)
                                   ..                                                                 
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                         00                                                                 


Q ss_pred             --cccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCC--CCcHHHHHHHcCCHH---HHHHHHHhCCCccccccc
Q 029474           68 --GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD--GRNPLHMAAMKGRIQ---VLVDLFRARPFAAYATTI  140 (193)
Q Consensus        68 --~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~~  140 (193)
                        +........+++.|+..++.+++++|+++|+++ +.++..  +.||||.|......+   +++++++ .+++++.+|.
T Consensus       331 Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~  408 (631)
T PHA02792        331 GATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDK  408 (631)
T ss_pred             CCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccc
Confidence              000112456788899999999999999999998 666665  469999877765543   5677776 6779999999


Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA  187 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~  187 (193)
                      .|+||||+|+..++.+++++|+++|++   ++.+|..|.|||++|+.
T Consensus       409 ~G~TPLh~Aa~~~n~eivelLLs~GAD---IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        409 HGRSILYYCIESHSVSLVEWLIDNGAD---INITTKYGSTCIGICVI  452 (631)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999   99999999999999976

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-24  Score=151.01  Aligned_cols=159  Identities=23%  Similarity=0.264  Sum_probs=145.0

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHc-----CChHHHHHHHhcCCccccccccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALR-----GHLDFAKEILRRTPVLAGELDSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~~~   77 (193)
                      +|+|+||+|+..++++.|+.|++.+-  ++++.++..|+||+++++..     .+.++|..|..-+... ..-...|+|+
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgv--C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~gQTA  343 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGV--CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHGQTA  343 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCc--ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhcchh
Confidence            68999999999999999999999885  67778899999999999875     3578888888877554 3346789999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      |++|+.+|+.++++.||.-|+++ |.+|.+|-|+|.+|+.+|+.++++.|+....++....|.+|.|+|.+|...|+.+|
T Consensus       344 LMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             hhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHH
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 029474          158 LKFLVSIM  165 (193)
Q Consensus       158 ~~~Ll~~g  165 (193)
                      .-+|-.+.
T Consensus       423 a~mlYa~~  430 (452)
T KOG0514|consen  423 AVMLYAHM  430 (452)
T ss_pred             HHHHHHHH
Confidence            98888764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.92  E-value=1.7e-23  Score=131.62  Aligned_cols=147  Identities=26%  Similarity=0.276  Sum_probs=110.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      +....+.+|+-.+.+..|+.|++..++  .++.+|.+|+||||-|+.+|+.++|+.|+..+++. +.+...|+||||-||
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an--~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKAN--HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSAC  138 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccc--cccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhh
Confidence            344567778888888888888887774  34567788888888888888888888888777776 666777888888888


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC-HHHHHHHHHhCCCccccccccCccHHhHHHHhC
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR-IQVLVDLFRARPFAAYATTIWSETVLHLCVKHN  153 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  153 (193)
                      ..++.+++-+|+++|+++ +.......||||.|+..++ ...+.+|+..++..+..+...++||+.+|-+.+
T Consensus       139 kWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            888888888888888887 6777777888888876644 456666666667777777777888888876654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-24  Score=156.15  Aligned_cols=173  Identities=27%  Similarity=0.366  Sum_probs=145.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      .+..|++.|+.+.+..|+..+..   .+..+.+|.|+||.+|.-.+.++|++|++++.++ +..|..++||+|.|+.+|+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~---~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS---PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC---ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhccccc
Confidence            46778899999999999999964   4667889999999999999999999999999998 7789999999999999999


Q ss_pred             HHHHHHHHhhCCCccc----------------------------------------------------------cccCCC
Q 029474           87 VEIVKELLQVNPDMCL----------------------------------------------------------ARDVDG  108 (193)
Q Consensus        87 ~~~~~~ll~~~~~~~~----------------------------------------------------------~~~~~~  108 (193)
                      ..++++|+.+|++...                                                          .....|
T Consensus       119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG  198 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence            9999999997764311                                                          112237


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 029474          109 RNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA  187 (193)
Q Consensus       109 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~  187 (193)
                      -|.||.|...|..++...|++ .+..++.+|.+|+||||.|+..|..+.+++|+++|++   .+.....|.||+.+|..
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~---~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD---MDAKTKMGETPLDVADE  273 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc---cchhhhcCCCCccchhh
Confidence            788888888888888888887 5668888888888888888888888888888888888   77888888888887754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.2e-23  Score=145.91  Aligned_cols=153  Identities=16%  Similarity=0.166  Sum_probs=124.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccc-ccCCCCHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVV-TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL-DSRRSSPLHM   80 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~~~l~~   80 (193)
                      ...++|+.|++.|+.++++.|++.|+++...+. .+..|.||||+|+..++.+++++|+++|+.+ +.+ +..|.||||+
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~  110 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYI  110 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHH
Confidence            356889999999999999999999985532211 2468999999999999999999999999887 443 5679999999


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHH
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF  160 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (193)
                      |+..++.+++++|++.|+++ +..+..|.||||.|+..++.+++..+.  +   . ..+..+.+|.+++   ++.+++++
T Consensus       111 Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~--~---~-~~~~~~~~~~~~~---~n~ei~~~  180 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMIC--D---N-EISNFYKHPKKIL---INFDILKI  180 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhc--C---C-cccccccChhhhh---ccHHHHHH
Confidence            99999999999999999998 788899999999999988877664433  1   1 2456677888875   46899999


Q ss_pred             HHHhcC
Q 029474          161 LVSIMN  166 (193)
Q Consensus       161 Ll~~g~  166 (193)
                      |++++.
T Consensus       181 Lish~v  186 (300)
T PHA02884        181 LVSHFI  186 (300)
T ss_pred             HHHHHH
Confidence            999876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=5e-24  Score=138.48  Aligned_cols=132  Identities=15%  Similarity=0.156  Sum_probs=110.2

Q ss_pred             hhccCCCCCcHHHHHHHcCChHHHHHHHhcC------CccccccccCCCCHHHHHHHcCCH---HHHHHHHhhCCCcccc
Q 029474           33 KVVTNRHHETPLHVAALRGHLDFAKEILRRT------PVLAGELDSRRSSPLHMAAQKGYV---EIVKELLQVNPDMCLA  103 (193)
Q Consensus        33 ~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~------~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~ll~~~~~~~~~  103 (193)
                      .+..|..|.||||+|++.|+..  ..+....      ......++..|.||||+|+..+..   +++++|++.|.++ +.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NG   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cc
Confidence            3456788999999999999842  2222221      112245688999999999999986   4688999999998 66


Q ss_pred             cc-CCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          104 RD-VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       104 ~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ++ ..|.||||+|+..++.+++++|+...+.+++.++..|+||||+|+..++.+++++|+++|++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            66 58999999999999999999999866789999999999999999999999999999999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=8.2e-23  Score=133.97  Aligned_cols=135  Identities=12%  Similarity=0.044  Sum_probs=112.9

Q ss_pred             hhhHHHHHHHHhCCHH----HHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHH---HHHHHhcCCccccccc-cCC
Q 029474            3 RMESLLYEASVEGNIT----TLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDF---AKEILRRTPVLAGELD-SRR   74 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~----~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~---v~~Ll~~~~~~~~~~~-~~~   74 (193)
                      +..++|+.||+.|+++    .++.|++.+.   ..+..|..|+||||+|+..|+.+.   +++|++.+... +.++ ..|
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~---~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g   94 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGH---LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTG   94 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcch---hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCC
Confidence            4567899999999994    4455666665   344568899999999999998654   78999999877 6666 589


Q ss_pred             CCHHHHHHHcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCc
Q 029474           75 SSPLHMAAQKGYVEIVKELLQ-VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE  143 (193)
Q Consensus        75 ~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  143 (193)
                      .||||+|+..++.+++++|++ .+.++ +..+..|.||||+|+..++.+++++|++ .+.+.+.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            999999999999999999995 78888 7789999999999999999999999998 5667777666554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=8.9e-23  Score=154.42  Aligned_cols=185  Identities=15%  Similarity=0.101  Sum_probs=140.7

Q ss_pred             hhhHHHHHHHH-hCCHHHHHHHHhcCcchh---------------------------------hhhccCCCCCcHHHHHH
Q 029474            3 RMESLLYEASV-EGNITTLLQLLEQDPLIL---------------------------------DKVVTNRHHETPLHVAA   48 (193)
Q Consensus         3 ~~~~~L~~A~~-~g~~~~~~~ll~~~~~~~---------------------------------~~~~~~~~g~~~L~~A~   48 (193)
                      ++.+++++|+. .|+.|++++|++.|++..                                 ..+..|..|.||||+|+
T Consensus       104 ~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i  183 (631)
T PHA02792        104 GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYI  183 (631)
T ss_pred             CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHH
Confidence            35678888865 589999999999987521                                 11245667899999999


Q ss_pred             HcC-------ChHHHHHHHhcCCccccccccCCCCHHHHHHHcC--CHHHHHHHHhhCC---------------------
Q 029474           49 LRG-------HLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG--YVEIVKELLQVNP---------------------   98 (193)
Q Consensus        49 ~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~---------------------   98 (193)
                      ..+       +.++++.|++++... +..+..|.||||+|+.+.  ..+++++|++...                     
T Consensus       184 ~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~  262 (631)
T PHA02792        184 ITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKN  262 (631)
T ss_pred             hhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCc
Confidence            988       789999999998887 567888999999999888  6777777765210                     


Q ss_pred             -Ccc------------------------------------------------------------------ccccCCCCcH
Q 029474           99 -DMC------------------------------------------------------------------LARDVDGRNP  111 (193)
Q Consensus        99 -~~~------------------------------------------------------------------~~~~~~~~~~  111 (193)
                       .+.                                                                  .........+
T Consensus       263 ~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~  342 (631)
T PHA02792        263 HKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINK  342 (631)
T ss_pred             cCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchH
Confidence             000                                                                  0000123455


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccccC--ccHHhHHHHhCcH---HHHHHHHHhcCccccccccCCCCchHHHHHH
Q 029474          112 LHMAAMKGRIQVLVDLFRARPFAAYATTIWS--ETVLHLCVKHNQL---EALKFLVSIMNDRDFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       112 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~  186 (193)
                      ++.|+..++.+++++|++ .|++++.+|..|  .||||.|+.....   +++++|+++|++   ++.+|..|.||||+|+
T Consensus       343 ~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TPLh~Aa  418 (631)
T PHA02792        343 YFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSILYYCI  418 (631)
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcchHHHHH
Confidence            778888899999999998 577888888775  5999987776554   468888999998   9999999999999999


Q ss_pred             hcCCcc
Q 029474          187 ADKQIE  192 (193)
Q Consensus       187 ~~~~~e  192 (193)
                      ..++.+
T Consensus       419 ~~~n~e  424 (631)
T PHA02792        419 ESHSVS  424 (631)
T ss_pred             HcCCHH
Confidence            988765

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.8e-22  Score=132.87  Aligned_cols=127  Identities=14%  Similarity=0.151  Sum_probs=109.4

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcC---cchhhhhccCCCCCcHHHHHHHcCC----hHHHHHHHhcCCcccccccc-CC
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQD---PLILDKVVTNRHHETPLHVAALRGH----LDFAKEILRRTPVLAGELDS-RR   74 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~---~~~~~~~~~~~~g~~~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~-~~   74 (193)
                      .+.++||+|+..|+.+.++.|+...   ....+.+.+|..|.||||+|+..|+    .+++++|++.+... +.++. .|
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g   98 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEG   98 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCC
Confidence            5689999999999999999986532   1112456678899999999999998    58899999998886 56664 89


Q ss_pred             CCHHHHHHHcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 029474           75 SSPLHMAAQKGYVEIVKELLQ-VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR  131 (193)
Q Consensus        75 ~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  131 (193)
                      .||||+|+..++.+++++|+. .+.++ +..+..|+|||+.|+..++.++++.|++..
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999998 48877 788999999999999999999999999743

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=3.7e-23  Score=155.44  Aligned_cols=181  Identities=29%  Similarity=0.373  Sum_probs=156.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+-|.||.|+.+|+.++++.|++..+..   +..+..|.+|||+|++.|+.++++.++...... +..+..|.+|||.|+
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~l---dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaa  123 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALL---DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAA  123 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhh---hhhhccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhh
Confidence            3568999999999999999999998755   234678999999999999999999999988554 778899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCc--------cccccccCccHHhHHHHhCc
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA--------AYATTIWSETVLHLCVKHNQ  154 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--------~~~~~~~g~t~l~~a~~~~~  154 (193)
                      +.|+.+++.+|+.++.+. .+.+..+.|++-.|++.|..+++..|++. ..+        ...++..+-+|+|.|+++|+
T Consensus       124 qhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  124 QHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            999999999999999998 88899999999999999999999999874 211        22345667799999999999


Q ss_pred             HHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          155 LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       155 ~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .++++.|++.|.+   +|..... .|+||.|+..|+.|+
T Consensus       202 ~~~~~~ll~ag~d---in~~t~~-gtalheaalcgk~ev  236 (854)
T KOG0507|consen  202 VECMQALLEAGFD---INYTTED-GTALHEAALCGKAEV  236 (854)
T ss_pred             HHHHHHHHhcCCC---ccccccc-chhhhhHhhcCcchh
Confidence            9999999999988   7655544 589999999998774

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.90  E-value=1.5e-22  Score=127.39  Aligned_cols=143  Identities=24%  Similarity=0.263  Sum_probs=126.4

Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCH
Q 029474           42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI  121 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  121 (193)
                      -.+.+|+..+....|+.|++..+...+.+|.+++||||.|+.+|+.+|++.|+..|++. +.+...|+||||.||++++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            46788999999999999999998888999999999999999999999999999999999 88999999999999999999


Q ss_pred             HHHHHHHHhCCCccccccccCccHHhHHHHhCcH-HHHHHHHH-hcCccccccccCCCCchHHHHHHhcC
Q 029474          122 QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQL-EALKFLVS-IMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       122 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~-~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      +++..|++ .+.+++.......||||+|+..++. ..+++|+. ++..   ...++..+.||+++|-+.+
T Consensus       144 ~va~~LLq-hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~---pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQ-HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH---PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHh-ccCcccccccccchhhHHhhcccchHHHHHHHhhccccC---hhhhcCccchHHHHHHHhh
Confidence            99999998 6789999988899999999987644 55666653 4444   5678889999999998753

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=2.1e-23  Score=156.81  Aligned_cols=187  Identities=26%  Similarity=0.317  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCc----------chhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccC
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDP----------LILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSR   73 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~----------~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   73 (193)
                      ..+-|..|++.|+++.+..+++...          ...+.+..|.+|+|+||.|+..|+.++++.|++..+.. ...+..
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~k   81 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTK   81 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhcc
Confidence            4567889999999999999998732          12355678889999999999999999999999988776 667899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC
Q 029474           74 RSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN  153 (193)
Q Consensus        74 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  153 (193)
                      |.+|||+|+.+|+.++++.++.++... +..+..|.+|||.+++.|+.+++.+|++ .+.+.-.++..+.|++..|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~-~~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLK-KNADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHh-cCCCccccCcccccHHHHHHHhh
Confidence            999999999999999999999999555 8889999999999999999999999998 67788899999999999999999


Q ss_pred             cHHHHHHHHHhcCcccc-----ccccCCCCchHHHHHHhcCCccC
Q 029474          154 QLEALKFLVSIMNDRDF-----LNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       154 ~~~~~~~Ll~~g~~~~~-----~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..++++.|++..-....     -..++-.+-+|||+|+++|+.++
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~  204 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVEC  204 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHH
Confidence            99999999986211000     12455677899999999999764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.2e-21  Score=137.98  Aligned_cols=140  Identities=14%  Similarity=0.054  Sum_probs=116.6

Q ss_pred             ccCCCCCc-HHHHHHHcCChHHHHHHHhcCCcccccc----ccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccc-cCCC
Q 029474           35 VTNRHHET-PLHVAALRGHLDFAKEILRRTPVLAGEL----DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLAR-DVDG  108 (193)
Q Consensus        35 ~~~~~g~~-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~  108 (193)
                      .+|..|.+ +||.|++.|+.+++++|+++|+.+ +.+    +..|.||||+|+..++.+++++|+++|+++ +.. +..|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g  104 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAK  104 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCC
Confidence            34566655 677777889999999999999887 444    458999999999999999999999999999 554 5679


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          109 RNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       109 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                      .||||.|+..++.+++++|+. .+++++.++..|.||||+|+..++.+++..+.  |.      ..+..+.+|++++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~  172 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALMICNNFLAFMIC--DN------EISNFYKHPKKIL  172 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC------cccccccChhhhh
Confidence            999999999999999999998 67899999999999999999998888875554  22      2456667777654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.88  E-value=6.4e-23  Score=139.20  Aligned_cols=112  Identities=31%  Similarity=0.394  Sum_probs=63.4

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      ..|..|++|||+|++.|+..+++.|+.+|... +..+.-..||||+|+..|+.+++.-|++..+++ +..+..|.||||+
T Consensus        29 ~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kadv-navnehgntplhy  106 (448)
T KOG0195|consen   29 VGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHY  106 (448)
T ss_pred             cccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhh
Confidence            34555556666666666665565555555554 444454555566665556555555555555555 5555555566666


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccccCccHHhHH
Q 029474          115 AAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLC  149 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  149 (193)
                      ||.+|.-.+.+-|+. .|..++.-+..|.||+..|
T Consensus       107 acfwgydqiaedli~-~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhcHHHHHHHHHh-ccceeeecccCCCCchhhh
Confidence            655555555555554 4445555555555555554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=126.52  Aligned_cols=127  Identities=17%  Similarity=0.154  Sum_probs=102.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhc--CcchhhhhccCCCCCcHHHHHHHcCCh---HHHHHHHhcCCccccccc-cCCCC
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHL---DFAKEILRRTPVLAGELD-SRRSS   76 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~--~~~~~~~~~~~~~g~~~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~~-~~~~~   76 (193)
                      ++.||||+|+..|++..+......  ..........|..|.||||+|+..|+.   +++++|++.+... +.++ ..|.|
T Consensus        16 ~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T   94 (154)
T PHA02736         16 EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNT   94 (154)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCc
Confidence            578999999999985433222211  111112334688899999999999986   4688999999876 5666 58999


Q ss_pred             HHHHHHHcCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 029474           77 PLHMAAQKGYVEIVKELLQV-NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR  131 (193)
Q Consensus        77 ~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  131 (193)
                      |||+|+..++.+++++|+.+ +.++ +..+..|.||||+|+..++.+++++|++.+
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999985 7877 888999999999999999999999999843

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.87  E-value=2.3e-21  Score=147.15  Aligned_cols=186  Identities=25%  Similarity=0.279  Sum_probs=154.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcc------hhhhhccCCCCCcHHHHHHHc---CChHHHHHHHhcCCcccccc----cc
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPL------ILDKVVTNRHHETPLHVAALR---GHLDFAKEILRRTPVLAGEL----DS   72 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~------~~~~~~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~----~~   72 (193)
                      .++..|...+.++.+..+......      ..+.+.+...|.|+||.|..+   ++.++++.|++..+...+..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            678888888888888887776632      134445567799999999984   34588999998776543332    45


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhhCCCcccc----------c------------cCCCCcHHHHHHHcCCHHHHHHHHHh
Q 029474           73 RRSSPLHMAAQKGYVEIVKELLQVNPDMCLA----------R------------DVDGRNPLHMAAMKGRIQVLVDLFRA  130 (193)
Q Consensus        73 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~------------~~~~~~~l~~a~~~~~~~~~~~ll~~  130 (193)
                      .|+||||+|+.+.+.+++.+|++.|+|+...          +            -..|+.||.+|+..++.+++++|++ 
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~-  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA-  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh-
Confidence            6999999999999999999999999887221          1            1247899999999999999999998 


Q ss_pred             CCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       131 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+++++..|..|+|.||..+.+-..++.++++++|++ .+...+|+.|.|||.+|+.-|+.||
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~em  323 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEM  323 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHH
Confidence            7889999999999999999999999999999999998 6678999999999999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=1e-20  Score=150.33  Aligned_cols=144  Identities=22%  Similarity=0.183  Sum_probs=112.1

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcCCcccccc--------------ccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccc
Q 029474           38 RHHETPLHVAALRGHLDFAKEILRRTPVLAGEL--------------DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA  103 (193)
Q Consensus        38 ~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  103 (193)
                      ..|.||||.|+..|+.++|+.|+++|..+. .+              ...|.+|||.|+..++.+++++|+++|+++ +.
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~  203 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LT  203 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hh
Confidence            458999999999999999999999988763 22              135899999999999999999999999988 88


Q ss_pred             ccCCCCcHHHHHHHcCC---------HHHHHHHHHhC--CCcc----ccccccCccHHhHHHHhCcHHHHHHHHHhcCcc
Q 029474          104 RDVDGRNPLHMAAMKGR---------IQVLVDLFRAR--PFAA----YATTIWSETVLHLCVKHNQLEALKFLVSIMNDR  168 (193)
Q Consensus       104 ~~~~~~~~l~~a~~~~~---------~~~~~~ll~~~--~~~~----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  168 (193)
                      +|..|+||||+|+..+.         ..+.+.++...  ..+.    ...|..|.||||+|+..|+.+++++|++.+.. 
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~-  282 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK-  282 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh-
Confidence            89999999999998861         22444444321  1222    45688999999999999999999999997644 


Q ss_pred             ccccccCCCCchHHHHHH
Q 029474          169 DFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       169 ~~~~~~d~~g~tpl~~A~  186 (193)
                        ..........|.+.+.
T Consensus       283 --~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       283 --QKKFVAWPNGQQLLSL  298 (743)
T ss_pred             --cceeeccCcchHhHhh
Confidence              2333444555555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.84  E-value=2.5e-19  Score=112.21  Aligned_cols=124  Identities=39%  Similarity=0.568  Sum_probs=96.0

Q ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 029474           36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA  115 (193)
Q Consensus        36 ~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a  115 (193)
                      .+..|.||||+|++.++.+++++|++.+... ...+..|.+|+|.|+..+..+++++|++.+... +..+..+.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            3566788888888888888888888877765 556778888888888888888888888887655 55567778888888


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      +..++.+++++|++ .+......+..+.||++.|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888887 44566667777888888888888888877763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=1.4e-19  Score=106.81  Aligned_cols=84  Identities=32%  Similarity=0.446  Sum_probs=58.6

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      ||+|++.|+.+++++|++.+.+. +.    |.||||+|+..|+.+++++|++ .+.+++..+..|+||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence            56777777777777777766555 22    6677777777777777777776 455667777777777777777777777


Q ss_pred             HHHHHHhcCc
Q 029474          158 LKFLVSIMND  167 (193)
Q Consensus       158 ~~~Ll~~g~~  167 (193)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            7777777766

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=1.2e-19  Score=107.09  Aligned_cols=85  Identities=38%  Similarity=0.475  Sum_probs=63.7

Q ss_pred             HHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCH
Q 029474            8 LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYV   87 (193)
Q Consensus         8 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~   87 (193)
                      ||+|++.|+++++++|++.+.+.      +. |.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI------NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC------CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCH
Confidence            67788888888888888866433      11 677888888888888888888877765 56677788888888888888


Q ss_pred             HHHHHHHhhCCCc
Q 029474           88 EIVKELLQVNPDM  100 (193)
Q Consensus        88 ~~~~~ll~~~~~~  100 (193)
                      +++++|+++|+++
T Consensus        73 ~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   73 EIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHTTT-T
T ss_pred             HHHHHHHHcCCCC
Confidence            8888888887766

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=3.7e-19  Score=135.29  Aligned_cols=160  Identities=22%  Similarity=0.202  Sum_probs=136.8

Q ss_pred             hhhHHHHHHHHh---CCHHHHHHHHhcCcchhhhhccC--CCCCcHHHHHHHcCChHHHHHHHhcCCccc----------
Q 029474            3 RMESLLYEASVE---GNITTLLQLLEQDPLILDKVVTN--RHHETPLHVAALRGHLDFAKEILRRTPVLA----------   67 (193)
Q Consensus         3 ~~~~~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~--~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~----------   67 (193)
                      .|+|.||.|..+   +.-+++..|++..+...+-...+  ..|.||||.|+.+.+.++|+.|+..++++.          
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~  221 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCP  221 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCc
Confidence            479999999983   45589999999987654333332  459999999999999999999999987642          


Q ss_pred             -ccc-----------ccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCc-
Q 029474           68 -GEL-----------DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA-  134 (193)
Q Consensus        68 -~~~-----------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-  134 (193)
                       +++           -..|..||-+|+..++.+++++|+++++|+ +.+|..|+|.||..+..-..++...+++ .+.. 
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~  299 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANA  299 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence             111           135789999999999999999999999999 9999999999999999988899999998 4445 


Q ss_pred             -cccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474          135 -AYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus       135 -~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                       ...++..|-|||.+|++.|..++++.+++.
T Consensus       300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence             778899999999999999999999999997

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2e-20  Score=127.15  Aligned_cols=134  Identities=26%  Similarity=0.252  Sum_probs=118.7

Q ss_pred             HHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHH
Q 029474           48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL  127 (193)
Q Consensus        48 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  127 (193)
                      |+.|+.-.|+..++......+.-|..|.+|||||+..|+..+++.|+.+|+.+ +..+....||||+|+.+|+-+++..|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            45566555676777666666888999999999999999999999999999998 77888889999999999999999999


Q ss_pred             HHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 029474          128 FRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       128 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~  186 (193)
                      ++ ...+++..+..|+|||||||..|+.++.+-|+..|+.   +++.+++|.|||+.|.
T Consensus        87 l~-~kadvnavnehgntplhyacfwgydqiaedli~~ga~---v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LS-RKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA---VNICNKKGMTPLDKAK  141 (448)
T ss_pred             HH-HhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce---eeecccCCCCchhhhc
Confidence            98 6679999999999999999999999999999999988   8999999999998763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=7.1e-19  Score=110.17  Aligned_cols=118  Identities=36%  Similarity=0.548  Sum_probs=107.1

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHH
Q 029474           70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLC  149 (193)
Q Consensus        70 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  149 (193)
                      ++..|.||||+|+..++.+++++|++.+.+. ...+..|.+|++.|+..++.+++++|++. +...+..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHH
Confidence            4678999999999999999999999999887 67888999999999999999999999984 446777788999999999


Q ss_pred             HHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          150 VKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       150 ~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +..++.+++++|++++.+   .+..+..|.||+++|+..++.+
T Consensus        81 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  120 (126)
T cd00204          81 ARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLE  120 (126)
T ss_pred             HHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHH
Confidence            999999999999999877   7889999999999999987654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=2.7e-19  Score=130.26  Aligned_cols=146  Identities=25%  Similarity=0.280  Sum_probs=129.3

Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCH
Q 029474           42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI  121 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  121 (193)
                      -.+.-|+..|..+-|+.|+..+..+ +..+.+|.|++|-+|...+.+|+++|+++|.++ +..+..++||+|.|+..|+.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            4577889999999999999998776 777999999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHhCC----------------------------------------------------------CccccccccCc
Q 029474          122 QVLVDLFRARP----------------------------------------------------------FAAYATTIWSE  143 (193)
Q Consensus       122 ~~~~~ll~~~~----------------------------------------------------------~~~~~~~~~g~  143 (193)
                      .++.+|+..+.                                                          ......+..|-
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            99999987322                                                          11222222478


Q ss_pred             cHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       144 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      |.||.|+..|+.++.++|++.|.+   ++.+|.+|.||||.|+.+|+.+
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~~---~~~~D~dgWtPlHAAA~Wg~~~  245 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGYS---VNIKDYDGWTPLHAAAHWGQED  245 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhccC---cccccccCCCcccHHHHhhhHh
Confidence            999999999999999999999999   8999999999999999998865

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=5.3e-19  Score=138.50  Aligned_cols=183  Identities=19%  Similarity=0.280  Sum_probs=135.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      +.+++|-.||..|+-|.++.|+.+|+++.   -+|+.|++||.+|+-.||..+|..|+.+...+..+.|.++.|+|-+||
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganie---hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIE---HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhccccc---ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            45788999999999999999999998653   468889999999999999999999999888877777888888888888


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccc--cccCc-----------------
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYAT--TIWSE-----------------  143 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--~~~g~-----------------  143 (193)
                      ..|..+++++|+..|++. ..++....|||.+|..-|..++|+.|+. .|..++.+  ...|-                 
T Consensus       833 sggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS-~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLS-SGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             CCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhh-cccccccccccccCcchhhhhhhccccHHHHH
Confidence            888888888888888776 5666667777777776677777777765 33233222  22344                 


Q ss_pred             -----------------cHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          144 -----------------TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       144 -----------------t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                                       |+|-+|+..|+.+++.+|+.+.++   +..+-..|.|||+-++..|..||
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an---vehRaktgltplme~AsgGyvdv  974 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN---VEHRAKTGLTPLMEMASGGYVDV  974 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHhhh---hhhhcccCCcccchhhcCCcccc
Confidence                             445555555555566666655555   56666677777777777776654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.73  E-value=9.1e-17  Score=90.98  Aligned_cols=102  Identities=24%  Similarity=0.218  Sum_probs=64.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      .+.|++++|.++.|+..+..+-++.+    ...|++|||+|+-+|..+++.+|+..++++ +.+|+.|.|||..|+..|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~----~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNE----IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHH----HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh
Confidence            45666677777777776666644322    125667777777777777777777666665 5566667777777777777


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           87 VEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        87 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      .+++++|+++|++. .....+|.+.+..
T Consensus        80 ~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   80 RDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            77777777766665 4444455544443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=8.7e-18  Score=131.87  Aligned_cols=182  Identities=22%  Similarity=0.258  Sum_probs=93.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      +||-.|...|.++++..|+..|..+ +....++.|.+||+.|...||.+.++.|++.+.++......+.+|+|.+|+..|
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseI-nSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEI-NSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhccccc-ccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            3444444555555555555555433 222334445555555555555555555555554443333333444444444444


Q ss_pred             CHHHHHHHHhhCCCccccccCCCCcHHHHH-----------------------------------HHcCCHHHHHHHHHh
Q 029474           86 YVEIVKELLQVNPDMCLARDVDGRNPLHMA-----------------------------------AMKGRIQVLVDLFRA  130 (193)
Q Consensus        86 ~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a-----------------------------------~~~~~~~~~~~ll~~  130 (193)
                      ..+++.+||.....+ ..+-..|.|||.-+                                   +..|+...+..|+. 
T Consensus       938 r~evv~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln- 1015 (2131)
T KOG4369|consen  938 RPEVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN- 1015 (2131)
T ss_pred             cchHHHHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC-
Confidence            444444444443333 23333333333333                                   33334444444443 


Q ss_pred             CCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       131 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +...+..++..|+|+|.+|+..|....+++|++++++   ++..|+...++++-|.+.|+++|
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad---~d~qdnr~~S~~maafRKgh~~i 1075 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD---ADQQDNRTNSRTMAAFRKGHFAI 1075 (2131)
T ss_pred             CccceecccCCCCcccchhccCCccccchHHhhcccC---hhhhhcccccccHHHHHhchhhe
Confidence            3344445556666777776666677777777776666   66666666677776766666654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.71  E-value=1e-15  Score=105.44  Aligned_cols=125  Identities=30%  Similarity=0.433  Sum_probs=70.1

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC-----HHHHHHHHhhCC--CccccccCCCCcH
Q 029474           39 HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY-----VEIVKELLQVNP--DMCLARDVDGRNP  111 (193)
Q Consensus        39 ~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~~~  111 (193)
                      .+.++++.++..+..+++++++..+..+ +.++..|.||+|+|+..++     .++++.|++.+.  +....++..|.||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence            3455555555555555555555555555 5555555555555555555     555555555555  3334445555555


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhc
Q 029474          112 LHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM  165 (193)
Q Consensus       112 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  165 (193)
                      ||+|+..|+.+++..+++ .+.+....+..|.|+++.|+..+..+++..+++.+
T Consensus       151 l~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         151 LHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            555555555555555555 34455555555555555555555555555555543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.69  E-value=1.9e-15  Score=104.07  Aligned_cols=121  Identities=33%  Similarity=0.435  Sum_probs=106.7

Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC-----HHHHHHHHHhCC--Cccccccc
Q 029474           68 GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR-----IQVLVDLFRARP--FAAYATTI  140 (193)
Q Consensus        68 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~  140 (193)
                      ...+..+.++++.++..+..+++.+++..+.++ +..+..|.||+|+|+..++     .++++.|++.+.  ......+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            445677889999999999999999999999998 8899999999999999999     999999998554  36777799


Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      .|+||||+|+..|+.++++.|++.|++   ++..+..|.||+++|+..++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~  194 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIE  194 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHH
Confidence            999999999999999999999999888   7888999999999999887754

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=4.8e-16  Score=88.08  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=68.6

Q ss_pred             HHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHH
Q 029474           43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQ  122 (193)
Q Consensus        43 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  122 (193)
                      -+.+++++|.++-|+.....+-++ +. ...|.+|||+|+..|+.+++++|+..|+++ +.+|++|-|||..|+..|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~-~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NE-IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HH-HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHH
Confidence            456677777777777766666444 22 346777777777777777777777777777 667777777777777777777


Q ss_pred             HHHHHHHhCCCccccccccCccHH
Q 029474          123 VLVDLFRARPFAAYATTIWSETVL  146 (193)
Q Consensus       123 ~~~~ll~~~~~~~~~~~~~g~t~l  146 (193)
                      ++++|++ .+.+-+.+..+|.+.+
T Consensus        82 cVklLL~-~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   82 CVKLLLQ-NGADRTIHAPDGTALI  104 (117)
T ss_pred             HHHHHHH-cCcccceeCCCchhHH
Confidence            7777776 5556666666665544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=3.1e-15  Score=101.95  Aligned_cols=121  Identities=22%  Similarity=0.247  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .-.++|..++..|+.+.+..|++.-   -.++..|..|+++|..|+..|+.++|+.|++.+++++..++..++||||.|+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~v---r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTV---RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHh---hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            4578999999999999999999874   2566789999999999999999999999999999998888899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL  127 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  127 (193)
                      .+|+.++..+|++.|+.. ...+.-|+|+-.+|+..|+.+++..+
T Consensus        88 LSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHH
Confidence            999999999999999988 77788999999999999988876544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=1.4e-16  Score=85.06  Aligned_cols=56  Identities=30%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             HHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       127 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                      |++.++.+++..|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            35545578889999999999999999999999999998888   899999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=2.9e-15  Score=109.61  Aligned_cols=118  Identities=27%  Similarity=0.316  Sum_probs=87.7

Q ss_pred             HHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHH
Q 029474           44 LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV  123 (193)
Q Consensus        44 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  123 (193)
                      |.-|+..|.+++|+.++..-.++ .+.+..|.|+||-|+..|+.+|++||++.|.++ +..|.+|+||||+|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            44566778888888777766555 566777888888888888888888888888887 7788888888888888888888


Q ss_pred             HHHHHHhCCCccccccccCccHHhHH--HHhCcHHHHHHHHH
Q 029474          124 LVDLFRARPFAAYATTIWSETVLHLC--VKHNQLEALKFLVS  163 (193)
Q Consensus       124 ~~~ll~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~  163 (193)
                      .+.|++.+++.+-..-.++.|+...+  ...|+.+|.+||-.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            88888866666666666677776654  34567777777754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.60  E-value=6.4e-15  Score=78.23  Aligned_cols=52  Identities=40%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL   93 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l   93 (193)
                      .||||+|++.|+.+++++|++++..+ +.+|.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34444444444444444444443332 33344444444444444444444443

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.60  E-value=1.1e-14  Score=114.29  Aligned_cols=103  Identities=24%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHH
Q 029474           77 PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE  156 (193)
Q Consensus        77 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (193)
                      .|+.|+..|+.+.++.|++.|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            356666677777777777776666 5566667777777777777777777776 45566666667777777777777777


Q ss_pred             HHHHHHHh-------cCccccccccCCCCchHHHH
Q 029474          157 ALKFLVSI-------MNDRDFLNAKDDYGMSILHL  184 (193)
Q Consensus       157 ~~~~Ll~~-------g~~~~~~~~~d~~g~tpl~~  184 (193)
                      ++++|+++       |++   .+..+..|.+|+..
T Consensus       163 iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~  194 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLE  194 (664)
T ss_pred             HHHHHHhCCCcccccCCC---CCccccCCCCccch
Confidence            77777766       554   45555556555543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.59  E-value=2.8e-14  Score=97.38  Aligned_cols=123  Identities=21%  Similarity=0.203  Sum_probs=111.5

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG  119 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~  119 (193)
                      ...+|.-++-.|..+....|++..... +.+|.+|.++|..|+..|+.+.++.|+++|+|++..++..+.|||++|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            357999999999999999999875444 7889999999999999999999999999999998888889999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474          120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus       120 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      +.++-..|++ .|......+.-|+|+-..|+.-|+.+++..+-.+
T Consensus        91 n~dvcrllld-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLD-AGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHh-ccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999998 6778888899999999999999999999887654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.59  E-value=1.5e-14  Score=113.55  Aligned_cols=104  Identities=22%  Similarity=0.317  Sum_probs=88.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      ..|+.|+..|+.+.++.|++.+++   ++..|..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+..+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad---in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD---PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            468999999999999999999874   4567889999999999999999999999998887 778999999999999999


Q ss_pred             CHHHHHHHHhh-------CCCccccccCCCCcHHHH
Q 029474           86 YVEIVKELLQV-------NPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        86 ~~~~~~~ll~~-------~~~~~~~~~~~~~~~l~~  114 (193)
                      +.+++++|+++       +.+. ...+..|.+|+..
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~  194 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLE  194 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCC-CccccCCCCccch
Confidence            99999999998       5555 4455555555443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=8.6e-15  Score=107.20  Aligned_cols=119  Identities=24%  Similarity=0.281  Sum_probs=100.8

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      .|..|+..|.++.|+.++..-.   ++...+..|.|+||-|+-.||.+||++|++.+.++ +..|.+|+||||.|+.+++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~---DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVT---DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhc---CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCc
Confidence            5778999999999999998764   55667889999999999999999999999999998 7889999999999999999


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHHHH--HcCCHHHHHHHHH
Q 029474           87 VEIVKELLQVNPDMCLARDVDGRNPLHMAA--MKGRIQVLVDLFR  129 (193)
Q Consensus        87 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~  129 (193)
                      ..+++.|++.|+-+.-..-.++.|+..-+-  ..|...+.++|-.
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999998874444556778776553  2366777787753

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.56  E-value=2.4e-14  Score=75.97  Aligned_cols=52  Identities=31%  Similarity=0.434  Sum_probs=23.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474          109 RNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus       109 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      +||||.|+..|+.+++++|++. +.+++..|.+|+||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4555555555555555555542 344554555555555555555555555554

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=3.2e-14  Score=75.92  Aligned_cols=44  Identities=30%  Similarity=0.435  Sum_probs=13.5

Q ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHH
Q 029474           36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus        36 ~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      .|..|.||||+|+..|+.+++++|++.+... +.+|..|+||+|+
T Consensus        12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~   55 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHY   55 (56)
T ss_dssp             --TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHh
Confidence            3444444444444444444444444333332 3334444444443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.15  E-value=5.5e-11  Score=86.54  Aligned_cols=88  Identities=27%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      ..+++|++.|++..++.+.-.+.   +....|.+.+|+||.|+..|+++++++|++........+|.+|.|||.-|...+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~---D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGM---DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcc---cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            34555555555555555555553   333445555555555555555555555555544444455555555555555555


Q ss_pred             CHHHHHHHHhh
Q 029474           86 YVEIVKELLQV   96 (193)
Q Consensus        86 ~~~~~~~ll~~   96 (193)
                      +.+++++|-+.
T Consensus       585 h~~v~k~L~~~  595 (622)
T KOG0506|consen  585 HKEVVKLLEEA  595 (622)
T ss_pred             cHHHHHHHHHH
Confidence            55555555543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.15  E-value=4.2e-11  Score=92.64  Aligned_cols=94  Identities=19%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             HHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccc
Q 029474           57 KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY  136 (193)
Q Consensus        57 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  136 (193)
                      .++...+.+..+.+|..|.++||+++..+..+++++|+++|.++.-+....|.||||.|+..|+++++..|++ .+....
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL~  113 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSLR  113 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh-cCCceE
Confidence            3444555555666777777777777777777777777777777733333567777777777777777777776 455666


Q ss_pred             cccccCccHHhHHHH
Q 029474          137 ATTIWSETVLHLCVK  151 (193)
Q Consensus       137 ~~~~~g~t~l~~a~~  151 (193)
                      ..|.+|.+||...++
T Consensus       114 i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EecccCCCHHHHHhh
Confidence            777777777766554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.14  E-value=7.9e-11  Score=85.74  Aligned_cols=93  Identities=23%  Similarity=0.314  Sum_probs=87.1

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHH
Q 029474           72 SRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVK  151 (193)
Q Consensus        72 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  151 (193)
                      ..+...+.+|+..|....++.+.-.|.+. +.+|.+.+|+||.|+..|+.+++++|+.....++..+|.+|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34567899999999999999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHHhc
Q 029474          152 HNQLEALKFLVSIM  165 (193)
Q Consensus       152 ~~~~~~~~~Ll~~g  165 (193)
                      .++.+++++|.+.-
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999998854

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.12  E-value=6.3e-10  Score=83.07  Aligned_cols=117  Identities=21%  Similarity=0.272  Sum_probs=77.0

Q ss_pred             HHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc-cccccccCCCCHHHHHHHcCC
Q 029474            8 LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV-LAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus         8 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      +..|+.++++-.++.....|...   ..++.+..+.||+|++.|+-++|++++++++. ..+..+.+|.|+||.|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l---l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL---LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce---EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            55666666666666665555533   23456666777777777777777777777653 223446677777777777777


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 029474           87 VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF  128 (193)
Q Consensus        87 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll  128 (193)
                      ..++.+|++.|+.. ...|..|.||-..|-+.+..++.-||-
T Consensus       947 r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             hHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHh
Confidence            77777777777766 566667777777777777766666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.06  E-value=7.4e-10  Score=82.74  Aligned_cols=111  Identities=18%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             HHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCc-cccccccCccHHhHHHHhCcHHH
Q 029474           79 HMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA-AYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        79 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      ..|+..+.+--+......|.+. ..++.+..+.||+|++-|+-++++|+++.++.. ....+..|+|+||.|+..++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3344444443344444456666 677888899999999999999999999866533 45668889999999999999999


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       158 ~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++|++.|+.   +...|..|.||-..|.+.|..|+
T Consensus       950 c~~lvdagas---l~ktd~kg~tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  950 CQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDL  982 (1004)
T ss_pred             HHHHHhcchh---heecccCCCChHHHHHhcCCchH
Confidence            9999999988   88999999999999998887763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.04  E-value=2.6e-10  Score=88.45  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 029474           15 GNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL   94 (193)
Q Consensus        15 g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   94 (193)
                      +....++-+++....- -.+.+|..|+|+||+|+..+..++++||+++|....-+-...|+||||.|+..|+.+++-.|+
T Consensus        28 s~~Nqlk~F~~k~c~n-~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQN-LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             CChhHHHHHHHHhhhh-hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            3443455555543222 255788999999999999999999999999998875444567999999999999999999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHh--CcHHHHHHHHHhc
Q 029474           95 QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH--NQLEALKFLVSIM  165 (193)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~g  165 (193)
                      .+|... .++|..|..||...++.....+.. ... .+.++.....+-+.-|-++-..  .+.+.|.++-..|
T Consensus       107 ~~g~SL-~i~Dkeglsplq~~~r~~~~~i~~-~~d-~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg  176 (1267)
T KOG0783|consen  107 SKGRSL-RIKDKEGLSPLQFLSRVLSSTIHP-VLD-LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSG  176 (1267)
T ss_pred             hcCCce-EEecccCCCHHHHHhhcccccccc-ccC-CccceeEecccccccccccCCCCCCChHHhHHHHhcc
Confidence            999887 899999999999877643332221 122 2233333333333334333322  3557777666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.00  E-value=8.4e-10  Score=51.99  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCccccccccC
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKD  175 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d  175 (193)
                      +|+||||+|+..++.+++++|+++|++   ++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD---INARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC---TTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC---CCCCC
Confidence            488999999999999999999999988   66665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=99.00  E-value=6e-10  Score=51.03  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.8

Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      +|+||||+|+..|+.+++++|+++|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            478999999999999999999998887

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.97  E-value=4.9e-09  Score=77.06  Aligned_cols=95  Identities=23%  Similarity=0.200  Sum_probs=82.2

Q ss_pred             ccccCCCCH------HHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccC
Q 029474           69 ELDSRRSSP------LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS  142 (193)
Q Consensus        69 ~~~~~~~~~------l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  142 (193)
                      .+|.+|.+.      ||..++.|+.+..-.|+..|++.+......|.||||.|++.|+..-+..|+- .|+++...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCC
Confidence            345555543      7889999999999999999999977777889999999999999988888886 778999999999


Q ss_pred             ccHHhHHHHhCcHHHHHHHHHh
Q 029474          143 ETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus       143 ~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      .||+.+|-..|+.++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999998888874

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.94  E-value=3.2e-09  Score=77.99  Aligned_cols=80  Identities=23%  Similarity=0.247  Sum_probs=69.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCcccc-ccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhc
Q 029474          110 NPLHMAAMKGRIQVLVDLFRARPFAAYA-TTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD  188 (193)
Q Consensus       110 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~  188 (193)
                      .-||..++.++.+..-.|+.. |++.+. .-..|.||||.|++.|+..-+++|+-+|+|   +...|.+|+||+.+|-..
T Consensus       135 rQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHHhc
Confidence            348999999999988888874 455554 445699999999999999999999999999   999999999999999999


Q ss_pred             CCccC
Q 029474          189 KQIEV  193 (193)
Q Consensus       189 ~~~ei  193 (193)
                      |+-++
T Consensus       211 gH~~l  215 (669)
T KOG0818|consen  211 GHHEL  215 (669)
T ss_pred             CchHH
Confidence            98653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.86  E-value=1.5e-08  Score=75.81  Aligned_cols=93  Identities=23%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchh-hhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLIL-DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~-~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      -|.-|+...|+..+..|+.+|.... +....+.+|.|+||+||+.|++.+.++|+..+.+. ..+|..|.|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            4566777777777777777765431 22234556778888888888887777777777766 566778888888888888


Q ss_pred             CHHHHHHHHhhCCCc
Q 029474           86 YVEIVKELLQVNPDM  100 (193)
Q Consensus        86 ~~~~~~~ll~~~~~~  100 (193)
                      ..++++.|+.+|...
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            888888888877543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=6.5e-09  Score=47.56  Aligned_cols=27  Identities=48%  Similarity=0.767  Sum_probs=14.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhhCCCc
Q 029474           74 RSSPLHMAAQKGYVEIVKELLQVNPDM  100 (193)
Q Consensus        74 ~~~~l~~a~~~~~~~~~~~ll~~~~~~  100 (193)
                      |+||||+|+..|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.83  E-value=1.9e-08  Score=74.56  Aligned_cols=89  Identities=28%  Similarity=0.268  Sum_probs=71.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      |+|+++...+.+.....+... .-..++..|..|.||||.|+.-|+.+.++.|+..++.. ..++..|+++||.|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            488888888888888766655 22245567888899999999999999999999888876 6778889999999999998


Q ss_pred             HHHHHHHHhhC
Q 029474           87 VEIVKELLQVN   97 (193)
Q Consensus        87 ~~~~~~ll~~~   97 (193)
                      ..++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            88887777753

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=1.1e-08  Score=48.14  Aligned_cols=27  Identities=44%  Similarity=0.644  Sum_probs=14.5

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCcc
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVL   66 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~   66 (193)
                      |.||||+|+..|+.+++++|++++..+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            455555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.79  E-value=2.6e-08  Score=74.59  Aligned_cols=89  Identities=21%  Similarity=0.181  Sum_probs=75.2

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCcc---ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCc
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMC---LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ  154 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  154 (193)
                      |..|+.......+-.|+.+|....   ...+.+|+|+||+|+..|+..+.+.|+. .+.++..+|..|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhccc
Confidence            455666667777888998875431   2235578999999999999999999998 778999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 029474          155 LEALKFLVSIMND  167 (193)
Q Consensus       155 ~~~~~~Ll~~g~~  167 (193)
                      .++++.|+++|..
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999964

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.75  E-value=8.6e-08  Score=74.92  Aligned_cols=120  Identities=19%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCC---ccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTP---VLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                      +.--+..|++.|+...|+..++...   ...+.+|.-|.++++.|+.+.+.++.++|++++...        ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            3345555666666666655554322   233445555666666666666666666666654332        23556666


Q ss_pred             HcCCHHHHHHHHHhCC---------CccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          117 MKGRIQVLVDLFRARP---------FAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~---------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ..|..++++.++....         .........+-||+..||..+++||++.|+.+|+.
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            6666666666654211         11223344566888888888888888888887765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.71  E-value=6.7e-08  Score=71.74  Aligned_cols=88  Identities=28%  Similarity=0.499  Sum_probs=73.5

Q ss_pred             cHHHHHHHcCChHHHHH-HHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 029474           42 TPLHVAALRGHLDFAKE-ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR  120 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~-Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~  120 (193)
                      -|+|.++.....+-... |...........|..|.||||.|+..|+.+.+..|+..++++ ..+|..|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            45899988877655544 433344455778999999999999999999999999999998 8899999999999999999


Q ss_pred             HHHHHHHHHh
Q 029474          121 IQVLVDLFRA  130 (193)
Q Consensus       121 ~~~~~~ll~~  130 (193)
                      .+++..++..
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9988888764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=1.2e-07  Score=67.84  Aligned_cols=76  Identities=25%  Similarity=0.322  Sum_probs=59.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHc
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      .--|+.||+.|+++.|+.|++.|.   +++..|....+||.+|+..||.++|++|+++|+.-  .++....---|+++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgv---nVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC--~rdtf~G~RC~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGV---NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC--SRDTFDGDRCHYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCC---CcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc--cccccCcchhhhhhhh
Confidence            346899999999999999999885   45566788889999999999999999999999864  3343333344555554


Q ss_pred             C
Q 029474           85 G   85 (193)
Q Consensus        85 ~   85 (193)
                      .
T Consensus       112 d  112 (516)
T KOG0511|consen  112 D  112 (516)
T ss_pred             H
Confidence            4

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.49  E-value=1.9e-07  Score=74.50  Aligned_cols=123  Identities=17%  Similarity=0.128  Sum_probs=96.1

Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHh
Q 029474           69 ELDSRRSSPLHMAAQKGYVEIVKELLQV-NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLH  147 (193)
Q Consensus        69 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~  147 (193)
                      .....|++.+|+++..+..-.+..+++- +... ...+..+...+|+ |..++++....++.-.+..++.+|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3456788999999999998888888885 5544 5667888888888 44556666656665567788899999999999


Q ss_pred             HHHHhCcHHHHHHHHHhcCcccc---ccccCCCCchHHHHHHhcCCccC
Q 029474          148 LCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       148 ~a~~~~~~~~~~~Ll~~g~~~~~---~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +|+..|+..++..|.+.|++...   +....-.|.|+-.+|..+|+.+|
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            99999999999999988876532   33444568999999998888654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.46  E-value=6.8e-07  Score=64.12  Aligned_cols=72  Identities=24%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      +.-|..||+.|+.+.|++|++.|.++ +.+|.+..+||.+|+..|+..++++|+++|+.- ......|.-++.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhhh
Confidence            56789999999999999999988777 888999999999999999999999999999864 4444556555433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.37  E-value=1.7e-06  Score=56.28  Aligned_cols=69  Identities=19%  Similarity=0.231  Sum_probs=60.9

Q ss_pred             hhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCc
Q 029474           32 DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM  100 (193)
Q Consensus        32 ~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  100 (193)
                      +++..|..|+|++++|+..|+.+.+.+|+.++.......+..+.+++.+|=..|..+++..|.+...+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            456789999999999999999999999999996555788999999999999999999999999875443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.28  E-value=1.6e-06  Score=69.31  Aligned_cols=89  Identities=27%  Similarity=0.296  Sum_probs=73.7

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHH
Q 029474           72 SRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVK  151 (193)
Q Consensus        72 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  151 (193)
                      ..|.++||.|+..+....+++|++.|.++ +..+..|++|+|.+...|+......+++ ++.+....+..|.+|+.+|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence            45688999999999999999999999887 8889999999999999999888888887 778888888999999999877


Q ss_pred             hCcHHHHHHHH
Q 029474          152 HNQLEALKFLV  162 (193)
Q Consensus       152 ~~~~~~~~~Ll  162 (193)
                      ..+.+++-++.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            75555554443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=1.6e-06  Score=69.35  Aligned_cols=80  Identities=23%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 029474          107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       107 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~  186 (193)
                      .|.++||.|+..+..-+...|++ .+.+++..|..|++|+|.+...|+...+..++++|++   .+..+.+|.+|+++|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~---~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD---PNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcccccc---ccccCccCcchhhHHh
Confidence            57899999999999999999998 6778999999999999999999999999999999999   8899999999999998


Q ss_pred             hcCC
Q 029474          187 ADKQ  190 (193)
Q Consensus       187 ~~~~  190 (193)
                      ...+
T Consensus       731 ~~~~  734 (785)
T KOG0521|consen  731 EAAN  734 (785)
T ss_pred             hhcc
Confidence            7644

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.16  E-value=3.4e-06  Score=67.69  Aligned_cols=124  Identities=20%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhc-CCccccccccCCCCHHHHHHHcCCHHHHHHHHh-hCCCccccccCCCCcHHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ-VNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~l~~  114 (193)
                      ...|++.+|++...+..-++..+++- +... ...+..|...+|.++ .++.++.-+++. .+..+ ++.|..|+||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai-~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAI-DIRDRNGWTPLHW  647 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeeccccc-ccccCCCCcccch
Confidence            33455666666665555555555542 2111 333555555555522 233333322222 23333 5555566666666


Q ss_pred             HHHcCCHHHHHHHHHhCC-----CccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474          115 AAMKGRIQVLVDLFRARP-----FAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~-----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      |...|+..++..|++.+.     .++...+..|.|+..+|...|+..+..+|-+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            666666555555554221     1222233345666666666666666655554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.04  E-value=1.8e-05  Score=51.68  Aligned_cols=64  Identities=22%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 029474           67 AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA  130 (193)
Q Consensus        67 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  130 (193)
                      ++.+|..|+|+++.|+..|..+.+.+|+.+|.......+..+.+++.+|-+.|..++++.|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4778999999999999999999999999999433388999999999999999999999999874

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.01  E-value=2.1e-05  Score=62.09  Aligned_cols=112  Identities=19%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhhCCC---ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHH
Q 029474           74 RSSPLHMAAQKGYVEIVKELLQVNPD---MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCV  150 (193)
Q Consensus        74 ~~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  150 (193)
                      +.--...|+..|+.-.++-.++....   ..+..|.-|+++++.|+.+.+.+++.+|+++.. ..       ..+|-+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-~~-------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-EE-------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-cc-------chHHHHHH
Confidence            34456788999998888877775332   226678889999999999999999999998432 22       35778999


Q ss_pred             HhCcHHHHHHHHHhcCcccc-------ccccCCCCchHHHHHHhcCCccC
Q 029474          151 KHNQLEALKFLVSIMNDRDF-------LNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       151 ~~~~~~~~~~Ll~~g~~~~~-------~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..|.+++++.++.+-..-..       -...-.-+.||+.+|+..+++||
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi  146 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI  146 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHH
Confidence            99999999999986543100       01223456899999999999986

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.61  E-value=0.0026  Score=41.69  Aligned_cols=140  Identities=19%  Similarity=0.143  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      +.-.|..|++.+-++++++.-+.....      -...++.+..||+..+.++|+|+-++-..      .+-.+.+..|..
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~------~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~  113 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE------RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFA  113 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc------hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhh
Confidence            345677888888888888877665321      12356788899999999999998544322      222355667777


Q ss_pred             cCCHHHH----HHHHhhCCCcccccc--CCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           84 KGYVEIV----KELLQVNPDMCLARD--VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        84 ~~~~~~~----~~ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      ....+..    ++++++.... ...|  .--..-|..|+..|-.+.+...++.+| +++      .++|..|+..++..+
T Consensus       114 ~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg-~~~------~~vls~Av~ynhRkI  185 (192)
T PF03158_consen  114 KKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGG-NVD------IIVLSQAVKYNHRKI  185 (192)
T ss_pred             ccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCC-ccc------HHHHHHHHHhhHHHH
Confidence            7776552    2333332111 0000  001123667888888888888887544 332      278888888888888


Q ss_pred             HHHHHH
Q 029474          158 LKFLVS  163 (193)
Q Consensus       158 ~~~Ll~  163 (193)
                      +.+++.
T Consensus       186 L~yfi~  191 (192)
T PF03158_consen  186 LDYFIR  191 (192)
T ss_pred             HHHhhc
Confidence            888764

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.33  E-value=0.00048  Score=30.16  Aligned_cols=26  Identities=35%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             CccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          142 SETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       142 g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      |.||+|+|+..++.++++.|++++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56777777777777777777776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.30  E-value=0.00056  Score=29.95  Aligned_cols=25  Identities=40%  Similarity=0.623  Sum_probs=13.7

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCC
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTP   64 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~   64 (193)
                      |.+|+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3455555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.03  E-value=0.0076  Score=40.99  Aligned_cols=115  Identities=12%  Similarity=0.072  Sum_probs=77.8

Q ss_pred             HHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccC----CCCcHHHHHHHc
Q 029474           43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV----DGRNPLHMAAMK  118 (193)
Q Consensus        43 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~----~~~~~l~~a~~~  118 (193)
                      .|.-|+...+.+.+.-++.....        ..+++.+++..+..++..+|+......  .+|.    .+.--+.++...
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft--~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFT--KQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhccee--cchhhhcCcchhhHHHHHhh
Confidence            45666666666666555543322        346788888888889999999864321  1111    121223444332


Q ss_pred             --CCHHHHHHHHHhCCCccccc---cccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          119 --GRIQVLVDLFRARPFAAYAT---TIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       119 --~~~~~~~~ll~~~~~~~~~~---~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                        .+..++.+++..+-++++.+   ...|.|.|.-|+..++.+++.+|+++|+-
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence              35678889998666666643   56799999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.98  E-value=0.002  Score=48.49  Aligned_cols=43  Identities=21%  Similarity=0.306  Sum_probs=34.6

Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~  186 (193)
                      .-.|+||+|+..|.-+++.+|++.|.|   +-.+|..|+||..++.
T Consensus       429 ltsT~LH~aa~qg~~k~v~~~Leeg~D---p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  429 LTSTFLHYAAAQGARKCVKYFLEEGCD---PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccchHHHHHHhcchHHHHHHHHHhcCC---chhcccCCCCcccccc
Confidence            345888888888888888888888877   6688888888887765

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.83  E-value=0.0034  Score=47.34  Aligned_cols=63  Identities=27%  Similarity=0.238  Sum_probs=47.5

Q ss_pred             hHHHHHHHhcCCcc-----ccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           53 LDFAKEILRRTPVL-----AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        53 ~~~v~~Ll~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                      ...+.+|.++....     +...+....|+||+|+.+|..+++.+||+.|+|+ ..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            45566676654322     1223445678999999999999999999999888 888999999988776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.47  E-value=0.055  Score=36.99  Aligned_cols=113  Identities=11%  Similarity=0.065  Sum_probs=81.4

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccc----cCCCCHHHHHH
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD----SRRSSPLHMAA   82 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~l~~a~   82 (193)
                      .|-.|++.-+++.+..++.....          -.+++-+|+..+..+++-+|+++....  .+|    ..+..-+-++.
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd----------A~~Am~~si~~~K~dva~~lls~f~ft--~~dv~~~~~~~ydieY~L  223 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD----------AHQAMWLSIGNAKEDVALYLLSKFNFT--KQDVASMEKELYDIEYLL  223 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH----------HHHHHHHHhcccHHHHHHHHHhhccee--cchhhhcCcchhhHHHHH
Confidence            46678888888888777765431          246889999889999999999875432  112    12333455555


Q ss_pred             Hc--CCHHHHHHHHhhCCCccc---cccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 029474           83 QK--GYVEIVKELLQVNPDMCL---ARDVDGRNPLHMAAMKGRIQVLVDLFRAR  131 (193)
Q Consensus        83 ~~--~~~~~~~~ll~~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  131 (193)
                      ..  .+..++++++++|-...+   .+-++|.|-|..|.+.++.+++..|++.+
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            54  457889999998854323   34568999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.44  E-value=0.017  Score=32.61  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=30.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcC
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT   63 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~   63 (193)
                      ...+..|+..|+.|+++.+++.+..       +   ..++..|+..-+.+++++|+++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-------~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-------D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-------H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4556667777777777766654411       0   24667777777777777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.42  E-value=0.04  Score=36.34  Aligned_cols=132  Identities=14%  Similarity=0.029  Sum_probs=85.1

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR  120 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~  120 (193)
                      ...|.-|++++...+++..-+.....    -...++.+-.||+..+.++++|+-+.-...      ...+.+..|....+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i~------~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHIY------NPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCCC------Cchhhhhhhhhccc
Confidence            45677889999888887765543211    234567889999999999999995543222      34556778888777


Q ss_pred             HHHHH---HHHHhCCCcccc--ccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          121 IQVLV---DLFRARPFAAYA--TTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       121 ~~~~~---~ll~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      .++..   .++-.....-..  .+.--..-|..|+..|-...+--.+++|.+   ++      .+.|..|+.+++-
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~---~~------~~vls~Av~ynhR  183 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN---VD------IIVLSQAVKYNHR  183 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc---cc------HHHHHHHHHhhHH
Confidence            66532   112111100000  011112447889999999999999999887   32      2888899888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.37  E-value=0.01  Score=33.52  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhh
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV   96 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   96 (193)
                      ...+..|+..|+.|+++.+++.+...        ...+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45788899999999998888654221        2468888888888999988886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=87.98  E-value=8.6  Score=28.16  Aligned_cols=48  Identities=6%  Similarity=-0.006  Sum_probs=23.3

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChH
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLD   54 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~   54 (193)
                      .|..+...++.+....+++.-.........|..|.-.+....+.+..+
T Consensus        24 ~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~   71 (322)
T cd07920          24 FLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEE   71 (322)
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHH
Confidence            344455555555555555542221222244555665666555555544

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=83.41  E-value=15  Score=26.86  Aligned_cols=154  Identities=5%  Similarity=-0.030  Sum_probs=72.8

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHhc--CCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCC--CccccccCCCCc
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKEILRR--TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP--DMCLARDVDGRN  110 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~~  110 (193)
                      ..+..|.-.+..+...+..+....+++.  +....-..+..|...+..+......+..+.+++.-.  ...-..+..|..
T Consensus        88 ~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~  167 (322)
T cd07920          88 SLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCR  167 (322)
T ss_pred             cccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccH
Confidence            3455666666666666654333333322  111112346677777777776665555444443210  111123445555


Q ss_pred             HHHHHHHcCCHHHHHHHHHh--CCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhc
Q 029474          111 PLHMAAMKGRIQVLVDLFRA--RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD  188 (193)
Q Consensus       111 ~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~  188 (193)
                      .+.........+....+++.  .....-..|..|+-.+..+...+..+..+.+++.-......-..+..|...+..+...
T Consensus       168 vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~  247 (322)
T cd07920         168 VIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKH  247 (322)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            55555555444333333321  1112223466777777777776655444444432211111124556666655555544

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-11
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		9e-06
1uoh_A	226	Human Gankyrin Length = 226		1e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		3e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 76  SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAA 135
           +PLH+AA+ G++E+VK LL+   D+  A+D +GR PLH+AA  G ++V+  L  A     
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA-GADV 61
Query: 136 YATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            A      T LHL  ++  LE +K L+    D   +NAKD  G + LHLA  +  +EV
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV 116

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 35  VTNRHHETPLHVAALRGHLDFAKEILR-RTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
           V+N   ETPLH+AA  GH + AK +L+ +  V A   D +  +PLH AA+ G+  +VK L
Sbjct: 42  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLL 99
Query: 94  LQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN 153
           L+ N +  LA    G  PLH+AA +G ++ ++ L       A   T    T LH+  K+ 
Sbjct: 100 LENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYG 157
Query: 154 QLEALKFLVSIMNDRD-FLNAKDDYGMSILHLAVADKQIEV 193
           ++   + L+    +RD   NA    G++ LH+AV    +++
Sbjct: 158 KVRVAELLL----ERDAHPNAAGKNGLTPLHVAVHHNNLDI 194

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+  K +L     +  + D    +PLH+AA+ G++E+VK LL+   D+ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPF 133
            A+D +GR PLH+AA  G ++V+  L  A  +
Sbjct: 63  -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
           +GR PLH+AA  G ++V+  L  A      A      T LHL  ++  LE +K L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
           D   +NAKD  G + LHLA  +  +EV
Sbjct: 60  D---VNAKDKNGRTPLHLAARNGHLEV 83

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 42  TPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
           TPLH AA  GH +  K ++ +   V A + D R  +PLH AA++G+ EIVK L+    D+
Sbjct: 39  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR--TPLHYAAKEGHKEIVKLLISKGADV 96
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
             A+D DGR PLH AA +G  ++ V L  ++      +     T L L  +H   E +K 
Sbjct: 97  N-AKDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 161 L 161
           L
Sbjct: 155 L 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 81  AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
           AA+ G  + VK+L++   D+  A D DGR PLH AA +G  ++ V L  ++     A   
Sbjct: 11  AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNAKDS 68
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              T LH   K    E +K L+S   D   +NAKD  G + LH A  +   E+
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEI 118

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +        D    +PLH+AA++G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
            A+D DG  PLH+AA +G ++++  L +A
Sbjct: 108 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 135

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D    +PLH+AA++G++EIV+ LL+   D+  A+D DG  PLH+AA +G ++++  L +A
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A      T LHL  +   LE ++ L+    D   +NA+D +G +   +++
Sbjct: 103 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +        D    +PLH+AA++G++EIV+ LL+   D+ 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
            A+D DG  PLH+AA +G ++++  L +A
Sbjct: 96  -AKDKDGYTPLHLAAREGHLEIVEVLLKA 123

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D    +PLH+AA++G++EIV+ LL+   D+  A+D DG  PLH+AA +G ++++  L +A
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A      T LHL  +   LE ++ L+    D   +NA+D +G +   LA+
Sbjct: 91  GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +        D    +PLH+AA++G++EIV+ LL+   D+ 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
            A+D DG  PLH+AA +G ++++  L +A
Sbjct: 96  -AKDKDGYTPLHLAAREGHLEIVEVLLKA 123

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D    +PLH+AA++G++EIV+ LL+   D+  A+D DG  PLH+AA +G ++++  L +A
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A      T LHL  +   LE ++ L+    D   +NA+D +G +   LA+
Sbjct: 91  GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
           +TPLH+AA  GH +  K +L +        DS   +PLH+AA+ G+ E+VK LL    D 
Sbjct: 38  KTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
             A+D DG+ PLH+AA  G  +V V L  ++      +     T L L  +H   E +K 
Sbjct: 97  N-AKDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 161 L 161
           L
Sbjct: 155 L 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 81  AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
           AA+ G  + VK+LL+   D+  A D DG+ PLH+AA  G  +V V L  ++     A   
Sbjct: 11  AAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDS 68
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             +T LHL  ++   E +K L+S   D    NAKD  G + LHLA  +   EV
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEV 118

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           + + +TPLH+AA  GHL+   E+L +       LD   S+PLH+AA++G++EIV+ LL+ 
Sbjct: 44  DTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVL 124
             D+  A D  G  PLH+AA  G ++++
Sbjct: 103 GADVN-ADDTIGSTPLHLAADTGHLEIV 129

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D+   +PLH+AA+ G++EIV+ LL+   D+  A D  G  PLH+AA +G ++++  L + 
Sbjct: 44  DTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                   TI S T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 103 GADVNADDTIGS-TPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH AA  GH +  K +L +        DS   +PLH AA+ G+ EIVK LL    D  
Sbjct: 39  TPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
            A+D DGR PLH AA  G  ++ V L  ++      +     T L L  +H   E +K L
Sbjct: 98  -AKDSDGRTPLHYAAENGHKEI-VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 42  TPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
           TPLH AA  GH +  K ++ +   V A + D R  +PLH AA+ G+ E+VK L+    D+
Sbjct: 39  TPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAAENGHKEVVKLLISKGADV 96
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
             A+D DGR PLH AA  G  +V V L  ++      +     T L L  +H   E +K 
Sbjct: 97  N-AKDSDGRTPLHHAAENGHKEV-VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 161 L 161
           L
Sbjct: 155 L 155

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +        D+  S+PLH+AA  G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
            A+D +G  PLH+AA +G ++++  L +
Sbjct: 108 -AKDDNGITPLHLAANRGHLEIVEVLLK 134

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 81  AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL-VDLFRARPFAAYATT 139
           AA+ G  + V+ L+    D+  A DV G  PLH+AA  G ++++ V L       AY T 
Sbjct: 21  AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 140 IWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
               T LHL      LE ++ L+    D   +NAKDD G++ LHLA     +E+
Sbjct: 80  --GSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEI 128

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +        D+  ++PLH+AA  G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
            A+D +G  PLH+AA  G ++++  L +
Sbjct: 108 -AKDYEGFTPLHLAAYDGHLEIVEVLLK 134

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 81  AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
           AA+ G  + V+ L+    D+  A D  G  PLH+AA  G +++ V++         A   
Sbjct: 21  AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEI-VEVLLKYGADVNAWDN 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           +  T LHL   +  LE ++ L+    D   +NAKD  G + LHLA  D  +E+
Sbjct: 79  YGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEI 128

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           + +  TPLH+AA  GHL+   E+L R       +D+  ++PLH+AA  G++EIV+ LL+ 
Sbjct: 32  DHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
             D+  A+D  G  PL++AA  G ++++  L +
Sbjct: 91  GADVN-AKDATGITPLYLAAYWGHLEIVEVLLK 122

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 48  ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
           A R   D    IL      A   D    +PLHMAA  G++EIV+ LL+   D+  A D +
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTN 67
Query: 108 GRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM 165
           G  PLH+AA  G ++++  L +  A   A  AT I   T L+L      LE ++ L+   
Sbjct: 68  GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI---TPLYLAAYWGHLEIVEVLLKHG 124
Query: 166 NDRDFLNAKDDYGMSILHLAV 186
            D   +NA+D +G +   +++
Sbjct: 125 AD---VNAQDKFGKTAFDISI 142

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D+   +PLH+AA  G++EIV+ LL+   D+  A D+ G  PLH+AA+ G +++ V++   
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A   W +T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D + S+PLH+AA  G+ EIV+ LL+   D+  ARD DG  PLH+AA  G +++ V++   
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A   +  T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +        DS   +PLH+AA++G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVL 124
            A D  G  PLH+AA +G ++++
Sbjct: 108 -ASDSHGFTPLHLAAKRGHLEIV 129

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 81  AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
           AA+ G  + V+ L+    D+  ARD  G  PLH+AA  G +++ V++         A   
Sbjct: 21  AARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEI-VEVLLKNGADVNAKDS 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              T LHL  +   LE ++ L+    D   +NA D +G + LHLA     +E+
Sbjct: 79  LGVTPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEI 128

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D+   +PLH+AA  G++EIV+ LL+   D+  A D+ G  PLH+AA+ G +++ V++   
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A   W +T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 36  TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
           T+    TPLH+AA  GHL+   E+L +        D    +PLH+AA  G++EIV+ LL+
Sbjct: 43  TDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 96  VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
              D+  A D DG  PLH+AA  G ++++  L +
Sbjct: 102 HGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR- 129
           D+   +PLH+AA  G++EIV+ LL+   D+  A D+ G  PLH+AA  G ++++  L + 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                AY       T LHL  K+  LE ++ L+    D   +NA+D +G +   +++
Sbjct: 103 GADVNAYDND--GHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+   E+L +       +D    +PL +AA  G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
            A D++G  PLH+AAM G ++++  L +
Sbjct: 108 -ANDMEGHTPLHLAAMFGHLEIVEVLLK 134

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D+   +PLH+AA  G++EIV+ LL+   D+  A D  G  PL +AA+ G +++ V++   
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A  +   T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA  GHL+  + +L+    +  + DS   +PLH+AA +G++E+V+ LL+   D+ 
Sbjct: 49  TPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVL 124
            A D +G  PLH+AA  G ++++
Sbjct: 108 -ANDHNGFTPLHLAANIGHLEIV 129

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D    +PLH+AA KG++EIV+ LL+   D+  A D  G  PLH+AA+ G +++ V++   
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 AT  +  T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 36  TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
           T+ +  TPLH+AA  G L+   E+L +        DS   +PLH+AA  G++EIV+ LL+
Sbjct: 35  TDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 96  VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
              D+  A D  G  PLH+AA+ G+++++  L +
Sbjct: 94  HGADVN-AYDRAGWTPLHLAALSGQLEIVEVLLK 126

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR- 129
           D    +PLH+AA  G +EIV+ LL+   D+  A D  G  PLH+AA  G ++++  L + 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK 189
                AY    W  T LHL     QLE ++ L+    D   +NA+D  G++   +++   
Sbjct: 95  GADVNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQG 149
Query: 190 Q 190
           Q
Sbjct: 150 Q 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 70  LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
           +D+   +PLH+AA  G++EIV+ LL+   D+  A DV G  PLH+AAM G +++ V++  
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEI-VEVLL 100
Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                  A  +   T LHL      LE ++ L+    D   +NA+D +G +   +++
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+    GHL+   E+L +        D    +PLH+AA +G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
            A D  G  PLH+AA  G ++++  L +
Sbjct: 108 -AMDYQGYTPLHLAAEDGHLEIVEVLLK 134

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRR---SSPLHMAAQKGYVEIVKELLQVNP 98
           TPLH AA  GH +  K++L +      ++++R    ++PLH+AA+ G+ EIVK LL    
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 99  DMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR 131
           D+  AR  DG  P H+A   G  ++ V L  A+
Sbjct: 67  DVN-ARSKDGNTPEHLAKKNGHHEI-VKLLDAK 97

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D+  ++PLH+AA  G++EIV+ LL+   D+  A DV G  PLH+AA  G +++ V++   
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                 A      T LHL  K   LE ++ L+    D   +NA+D +G +   +++
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
           VT++   +PLHVAAL G  D    +L+     AG  ++ ++ PLH+A Q+G+ ++VK LL
Sbjct: 81  VTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 95  QVN--PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
             N  P+    +D+ G  PL  A   G  + LV L      +  A+     T LH  V  
Sbjct: 140 DSNAKPNK---KDLSGNTPLIYACSGGHHE-LVALLLQHGASINASNNKGNTALHEAVIE 195
Query: 153 NQLEALKFL------VSIMNDR 168
             +  ++ L      V ++N R
Sbjct: 196 KHVFVVELLLLHGASVQVLNKR 217

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 75  SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA 134
           SSPLH+AA  G  +++  LL+   +   AR+ D   PLH+A  +G  QV+  L  +    
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 135 AYATTIWSETVLHLCVK-HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                  +  +++ C   H++L AL     ++     +NA ++ G + LH AV +K + V
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVAL-----LLQHGASINASNNKGNTALHEAVIEKHVFV 200

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
           D R+S+PLH+AA    V IV+ LLQ   D+  A+D  G  PLH A   G  +V  +L   
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEV-TELLLK 112
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
                 A  +W  T LH     N++E    L+S   D   +N    +G S + +A
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMA 164

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 70  LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           +D    +PLH+AA++G++EIV+ LL+   D+  ARD+ GR PLH+AA  G ++++
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIV 96

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 93  LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
           +L  N     A D  G  PLH+AA +G +++ V++         A  IW  T LHL    
Sbjct: 32  ILMANGADVNAMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
             LE ++ L+    D   +NA+D +G +   +++
Sbjct: 91  GHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 70  LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           +D    +PLH+AA++G++EIV+ LL+   D+  A D+ GR PLH+AA  G ++++
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIV 96

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 93  LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
           +L  N     A D  G  PLH+AA +G +++ V++         A+ IW  T LHL    
Sbjct: 32  ILMANGADVNAMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
             LE ++ L+    D   +NA+D +G +   +++
Sbjct: 91  GHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA RGHL+   E+L +        DS   +PLH+AA  G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
            A+D  G+    ++   G 
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 73  RRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
            + SPLH AA+ G+V+I   L+Q   N D C     D R PL  AA    ++ +  L +A
Sbjct: 10  NKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ 190
                      S T LHL  K    E +++L+S  N +  +N +DD G + +  A   K 
Sbjct: 67  GALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLS--NGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 191 IEV 193
           +++
Sbjct: 124 VDL 126

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 70  LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           LD    +PLH+AAQ G++EIV+ LL+   D+  A D  G  PLH+AA++G ++++
Sbjct: 43  LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIV 96

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 36  TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
           T++   T LH A   GH +   E L +  V   + D    SPLH+AA  G  EIVK LL 
Sbjct: 36  TDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL- 93
Query: 96  VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR--ARP--------------------- 132
           V      A + +G  PLH AA K R ++ V L    A P                     
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 133 ------FAAYATTIW---SETVLHLCVKHNQLEALKFLVS 163
                 F   +T I      T LHL     ++E  KFLV+
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 47  AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
           AA  G ++  K++     V   +++ R+S+PLH AA    V +V+ LLQ   D+  A+D 
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 73
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
            G  PLH A   G  +V  +L            +W  T LH      + E  K L+
Sbjct: 74  GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 47  AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
           AA  G ++  K++     V   +++ R+S+PLH AA    V +V+ LLQ   D+  A+D 
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 75
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
            G  PLH A   G  +V  +L            +W  T LH      + E  K L+
Sbjct: 76  GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48  ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
           A  G LD  KE +     LA   D    + LH A   G+ EIV+ LLQ+   +   +D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
           G +PLH+AA  GR +++  L   +     A      T LH     N+ E    L+    +
Sbjct: 73  GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
            D   AKD Y  + +H A A   +++
Sbjct: 132 PD---AKDHYDATAMHRAAAKGNLKM 154

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 47  AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
           AA  G ++  K++     V   +++ R+S+PLH AA    V +V+ LLQ   D+  A+D 
Sbjct: 19  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 77
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
            G  PLH A   G  +V  +L            +W  T LH      + E  K L+
Sbjct: 78  GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48  ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
           A  G L+  KE +     LA   D    + LH A   G+ EIV+ LLQ+   +   +D  
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
           G +PLH+AA  GR +++  L   +     A      T LH     N+ E    L+    +
Sbjct: 73  GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
            D   AKD Y  + +H A A   +++
Sbjct: 132 PD---AKDHYEATAMHRAAAKGNLKM 154

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48  ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
           A  G L+  KE +     LA   D    + LH A   G+ EIV+ LLQ+   +   +D  
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 73
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
           G +PLH+AA  GR +++  L   +     A      T LH     N+ E    L+    +
Sbjct: 74  GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
            D   AKD Y  + +H A A   +++
Sbjct: 133 PD---AKDHYEATAMHRAAAKGNLKM 155

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 75  SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA 134
           +SPLH+AAQ G+    + LL+          VD R PLHMAA +G   + V++       
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANI-VEVLLKHGAD 92
Query: 135 AYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
             A  +   T LH   +HN  E ++ L+    D
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           D + ++PLH+AA   ++EIV+ LL+   D+  A D DG  PLH+AA+ G ++++
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIV 96

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 44  LHVAALRGHLDFAKEILRRTPVLAGEL------DSRRSSPLHMAAQKGYVEIVKELLQVN 97
           LH+A +        E++R+   + G+L      ++ + +PLH+A      EI + LL   
Sbjct: 12  LHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 98  PDMCLARDVDGRNPLHMAAMKG---RIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKH 152
            D  L RD  G  PLH+A  +G    + VL          +   AT     T LHL   H
Sbjct: 69  CDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDY-GMSILHLAV 186
             L  ++ LVS+  D   +NA++   G + LHLAV
Sbjct: 128 GYLGIVELLVSLGAD---VNAQEPCNGRTALHLAV 159

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 3  RMESLLYEASVEGNITTXXXXXXXXXXXXXKVVTNRHHETPLHVAALRGHLDFAKEILRR 62
          R E+LL+ AS++G+I +             K   +    TPLH A   GHL    E+L +
Sbjct: 9  RGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVV-ELLLQ 64
Query: 63 TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
             L      +  SPLH AA+ G+V+IVK LL 
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 44  LHVAALRGHLDFAKEILRRTPVLAGEL------DSRRSSPLHMAAQKGYVEIVKELLQVN 97
           LH+A +        E++R+   + G+L      ++ + +PLH+A      EI + LL   
Sbjct: 9   LHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 65
Query: 98  PDMCLARDVDGRNPLHMAAMKG---RIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKH 152
            D  L RD  G  PLH+A  +G    + VL          +   AT     T LHL   H
Sbjct: 66  CDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 124
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDY-GMSILHLAV 186
             L  ++ LVS+  D   +NA++   G + LHLAV
Sbjct: 125 GYLGIVELLVSLGAD---VNAQEPCNGRTALHLAV 156

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPV---LAGELDSRRSSPLHMAAQKGYVEIVKEL 93
           ++ + T LH AA+   +D  K  + +  +   L G+L+S   +PLH A ++G++ +V +L
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS---TPLHWATRQGHLSMVVQL 95
Query: 94  LQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF 128
           ++   D  L  D +G + +H+AA  G   ++  L 
Sbjct: 96  MKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLI 129

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 43  PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPDM 100
           PLH A +       +E+L   P L  + D     PLH +      EI   LL    N ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE--TVLHLCVKHNQLEAL 158
               D  G  P H+A   G ++V+  L+  RP       I ++  T LHL V     E  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 159 KFLV 162
           +FL+
Sbjct: 124 QFLI 127

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
           PLH A  +     V+ELL   P + L +D DGR PLH +            F+A    ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------FQAHEITSF 54
Query: 137 --------------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGM 179
                           + W  T  H+      LE +K L     DR     LN   + G+
Sbjct: 55  LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGV 108
Query: 180 SILHLAVADKQIEV 193
           + LHLAV  K  EV
Sbjct: 109 TCLHLAVGKKWFEV 122

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 39  HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
           H  +PLH A   G     + ++ R   +   ++    +PLH+AA  G+ +IV++LLQ   
Sbjct: 33  HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 99  DMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
           D+  A +  G  PLH A   G+ QV  DL
Sbjct: 92  DIN-AVNEHGNVPLHYACFWGQDQVAEDL 119

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 43  PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPDM 100
           PLH A +       +E+L   P L  + D     PLH +      EI   LL    N ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE--TVLHLCVKHNQLEAL 158
               D  G  P H+A   G ++V+  L+  RP       I ++  T LHL V     E  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 159 KFLV 162
           +FL+
Sbjct: 124 QFLI 127

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
           PLH A  +     V+ELL   P + L +D DGR PLH +            F+A    ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------FQAHEITSF 54
Query: 137 --------------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGM 179
                           + W  T  H+      LE +K L     DR     LN   + G+
Sbjct: 55  LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGV 108
Query: 180 SILHLAVADKQIEV 193
           + LHLAV  K  EV
Sbjct: 109 TCLHLAVGKKWFEV 122

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 39  HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
           H  +PLH A   G     + ++ R   +   ++    +PLH+AA  G+ +IV++LLQ   
Sbjct: 38  HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 99  DMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
           D+  A +  G  PLH A   G+ QV  DL
Sbjct: 97  DIN-AVNEHGNVPLHYACFWGQDQVAEDL 124

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 43  PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPDM 100
           PLH A +       +E+L   P L  + D     PLH +      EI   LL    N ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE--TVLHLCVKHNQLEAL 158
               D  G  P H+A   G ++V+  L+  RP       I ++  T LHL V     E  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 159 KFLV 162
           +FL+
Sbjct: 124 QFLI 127

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
           PLH A  +     V+ELL   P + L +D DGR PLH +            F+A    ++
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------FQAHEITSF 54
Query: 137 --------------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGM 179
                           + W  T  H+      LE +K L     DR     LN   + G+
Sbjct: 55  LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGV 108
Query: 180 SILHLAVADKQIEV 193
           + LHLAV  K  EV
Sbjct: 109 TCLHLAVGKKWFEV 122

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA+  HL+   E+L +       +D+   +PLH+ A  G++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
            A+D  G+    ++   G 
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 75  SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR-------IQVLVDL 127
            + LH+AA KGY E++K L+Q   D+ + +D DG  PLH AA  G+       ++ L D+
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 128 FRARPFAAYATTIWSETVL 146
                    A  +  E +L
Sbjct: 259 EAVNKVGQTAFDVADEDIL 277

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLH+AA+ GHL+  + +L+    +    ++ R+ PLH+AA   ++EIV+ LL+   D+ 
Sbjct: 49  TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT-PLHLAAWADHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
            A+D  G+    ++   G 
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 57  KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
           KEIL+ T     E+D+  ++PL++A     +EI K L+    D+ L   +   +P   A 
Sbjct: 22  KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAG 80
Query: 117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
            +GR ++L  + +           +    L    +   ++ +K L+   + R+ ++ ++D
Sbjct: 81  AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE--DGREDIDFQND 138
Query: 177 YGMSILHLAVA 187
           +G + L  AV 
Sbjct: 139 FGYTALIEAVG 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-22
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-10
2rfa_A	232	Transient receptor potential cation channel subfa	3e-23
2rfa_A	232	Transient receptor potential cation channel subfa	7e-19
2rfa_A	232	Transient receptor potential cation channel subfa	3e-18
2rfa_A	232	Transient receptor potential cation channel subfa	3e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-19
2etb_A	256	Transient receptor potential cation channel subfam	1e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	9e-14
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2etb_A	256	Transient receptor potential cation channel subfam	8e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-16
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	5e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	6e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 94.1 bits (235), Expect = 3e-24
 Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NP 98
             PLH A +       +E+L   P L  + D     PLH +      EI   LL    N 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 99  DMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKHNQLE 156
           ++    D  G  P H+A   G ++V V     RP        T    T LHL V     E
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             +FL+   N    +  KD +    LH A +   +++
Sbjct: 122 VSQFLIE--NGAS-VRIKDKFNQIPLHRAASVGSLKL 155

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 93.3 bits (233), Expect = 6e-24
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 26/191 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ +           LL +   +      +    TP H+A   G+L+  K +  R     
Sbjct: 40  LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP---L 96

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELL----QVNPDMCLARDVDGRNPLHMAAMKG 119
                ++ ++  + LH+A  K + E+ + L+     V       +D   + PLH AA  G
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-----IKDKFNQIPLHRAASVG 151

Query: 120 RIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN-DRDFLNAKD 175
            +++   L  L ++             T L   +     +A   LV     +    +  D
Sbjct: 152 SLKLIELLCGLGKSAV---NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVD 205

Query: 176 DYGMSILHLAV 186
           + G     +A+
Sbjct: 206 NKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.8 bits (224), Expect = 1e-22
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 36/203 (17%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR--TPV 65
           L++A +E     + +LL   P +L +   ++    PLH +      +    +L +     
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQ------VNPDMCLARDVDGRNPLHMAAMKG 119
           L    D    +P H+A   G +E+VK L        +N          G   LH+A  K 
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQGVTCLHLAVGKK 118

Query: 120 RIQVL---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF 170
             +V          V               +++  LH       L+ ++ L      +  
Sbjct: 119 WFEVSQFLIENGASVR----------IKDKFNQIPLHRAASVGSLKLIELLCG--LGKSA 166

Query: 171 LNAKDDYGMSILHLAVADKQIEV 193
           +N +D  G + L  A+A+   + 
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDA 189

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.2 bits (160), Expect = 2e-13
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A  +        L+E         + ++ ++ PLH AA  G L   + +        
Sbjct: 111 LHLAVGKKWFEVSQFLIENGA---SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
              D +  +PL  A  +G+ +    L++      D     D  G     +A  +   +  
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---LVDNKGAKAEDVALNEQVKKFF 224

Query: 125 VD 126
           ++
Sbjct: 225 LN 226

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 93.5 bits (233), Expect = 4e-24
 Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           ++ A       T  +L  ++    D +      +T       +G                
Sbjct: 16  VFRALYTFEPRTPDELYIEEG---DIIYITDMSDTNWWKGTSKGRTGLIPSNYVA----- 67

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQV-- 123
            E      +PLH AA++G +  ++E L   V  +     D  G   L+ A   G   +  
Sbjct: 68  -EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN---GLDKAGSTALYWACHGGHKDIVE 123

Query: 124 -LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSIL 182
            L                  +T LH        + ++ L++        + ++       
Sbjct: 124 MLFTQPNIELN---QQNKLGDTALHAAAWKGYADIVQLLLA--KGAR-TDLRNIEKKLAF 177

Query: 183 HLAVADKQIEV 193
            +A       +
Sbjct: 178 DMATNAACASL 188

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 9e-20
 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 37/190 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
            ++ + +G       L+                + PLH AA RG+L + +E L       
Sbjct: 49  WWKGTSKGR----TGLIPS----NYVAEQAESIDNPLHEAAKRGNLSWLRECLD-----N 95

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ-----VNPDMCLARDVDGRNPLHMAAMK 118
                 LD   S+ L+ A   G+ +IV+ L       +N      ++  G   LH AA K
Sbjct: 96  RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-----QQNKLGDTALHAAAWK 150

Query: 119 GRIQVLVDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKD 175
           G   + V L     AR        I  +    +         LK        R      +
Sbjct: 151 GYADI-VQLLLAKGARTDL---RNIEKKLAFDMATNAACASLLKKKQGTDAVR---TLSN 203

Query: 176 DYGMSILHLA 185
                    +
Sbjct: 204 AEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 9e-17
 Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 22/159 (13%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           +  +  A          E+              +     +       KG   ++      
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE-----EGDIIYITDMSDTNWWKGTSKGRTGLIPSN--- 64

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKHNQ 154
                  +     NPLH AA +G +  L +    R              T L+       
Sbjct: 65  ---YVAEQAESIDNPLHEAAKRGNLSWLRECLDNR---VGVNGLDKAGSTALYWACHGGH 118

Query: 155 LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            + ++ L +  N    LN ++  G + LH A      ++
Sbjct: 119 KDIVEMLFTQPNIE--LNQQNKLGDTALHAAAWKGYADI 155

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           LY A   G+   +  L  Q  + L++   N+  +T LH AA +G+ D   ++L    +  
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQ--QNKLGDTALHAAAWKGYADIV-QLL----LAK 162

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG 119
           G      +  +     MA       ++K+    +       + +       + ++ 
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEH 217

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 91.7 bits (229), Expect = 6e-24
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPD 99
             +H  A +G LD  KE LR+   L  + D R  +PL  A+  G +E V+ LL+   +P 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 100 MCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLE 156
                  +  + L +A+  G   +   L++                 T L   V+ N ++
Sbjct: 64  ---ILAKERESALSLASTGGYTDIVGLLLE-RDVDI---NIYDWNGGTPLLYAVRGNHVK 116

Query: 157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            ++ L++     D L  + D G + + LAVA    +V
Sbjct: 117 CVEALLA--RGAD-LTTEADSGYTPMDLAVALGYRKV 150

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.2 bits (225), Expect = 2e-23
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 22/179 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           +++ + +G +  L + L +   +++K   +    TPL  A+  G ++  + +L       
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNK--PDERGFTPLIWASAFGEIETVRFLLEW----- 58

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           G     L   R S L +A+  GY +IV  LL+ + D+    D +G  PL  A     ++ 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKC 117

Query: 124 ---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGM 179
              L+    A             T + L V     +  + + + +     L   +    
Sbjct: 118 VEALLAR-GADL---TTEADSGYTPMDLAVALGYRKVQQVIENHILK---LFQSNLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.3 bits (132), Expect = 9e-10
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L  AS  G    +  LLE+D    D  + + +  TPL  A    H+   + +L R     
Sbjct: 73  LSLASTGGYTDIVGLLLERDV---DINIYDWNGGTPLLYAVRGNHVKCVEALLAR----- 124

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNP 111
           G           +P+ +A   GY ++ + +      +    ++   +P
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL-FQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
               +H  A +G +  L +  R              T L       ++E ++FL+    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
               +       S L LA      ++
Sbjct: 62  ---PHILAKERESALSLASTGGYTDI 84

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.7 bits (229), Expect = 8e-24
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ----VN 97
             +      G+    +  L  T     + D    SPLH A ++G   +V+ L+     +N
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 98  PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKHNQL 155
                  +     PLH+AA  G   ++  L + +   A   A        LH      Q 
Sbjct: 67  -----VMNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQD 118

Query: 156 EALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           +  + LV+  N    ++  + YG   +  A A  +  +
Sbjct: 119 QVAEDLVA--NGAL-VSICNKYGEMPVDKAKAPLRELL 153

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.3 bits (207), Expect = 1e-20
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           ++    EGN   +   L+     L++   + H  +PLH A   G      E+L    ++ 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVV-EML----IMR 61

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
           G     ++    +PLH+AA  G+ +IV++LLQ   + +   A +  G  PLH A   G+ 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQD 118

Query: 122 QVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
           QV  DL    A          + E  +       +    +    
Sbjct: 119 QVAEDLVANGALV---SICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 19/119 (15%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G+   + +LL+      D    N H   PLH A   G    A++++       
Sbjct: 76  LHLAASHGHRDIVQKLLQYKA---DINAVNEHGNVPLHYACFWGQDQVAEDLVAN----- 127

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQ 122
           G      +     P+  A       + +   ++  ++        R P      KG  +
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL-------NRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 105 DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS- 163
             +  + +     +G    +                   + LH   +  +   ++ L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 164 ---IMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              I       N  +    + LHLA +    ++
Sbjct: 62  GARI-------NVMNRGDDTPLHLAASHGHRDI 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.0 bits (240), Expect = 8e-24
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 24/187 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+ EG+   +  LL +     +  + N+   TPLH+ A  GH+  A  +++      
Sbjct: 249 LHLAAQEGHAEMVALLLSKQA---NGNLGNKSGLTPLHLVAQEGHVPVADVLIKH----- 300

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
           G           +PLH+A+  G +++VK LLQ   + +   A+   G +PLH AA +G  
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---AKTKLGYSPLHQAAQQGHT 357

Query: 122 QVLVDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYG 178
            + V L     A P      +    T L +  +   +     L  + ++  F+   D + 
Sbjct: 358 DI-VTLLLKNGASP---NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413

Query: 179 MSILHLA 185
           MS     
Sbjct: 414 MSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.3 bits (238), Expect = 2e-23
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 17/190 (8%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G +     LLE+D          ++  TPLHVA    +LD  K +L R     
Sbjct: 150 LHVAAKYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR----- 201

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           G           +PLH+AA++  VE+ + LLQ       A  V G  PLH+AA +G  ++
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEM 260

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
            V L  ++            T LHL  +   +     L+   +    ++A    G + LH
Sbjct: 261 -VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVM-VDATTRMGYTPLH 316

Query: 184 LAVADKQIEV 193
           +A     I++
Sbjct: 317 VASHYGNIKL 326

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.9 bits (237), Expect = 2e-23
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 25/194 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A    N+  +  LL +            +  TPLH+AA +  ++ A+ +L+      
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGG---SPHSPAWNGYTPLHIAAKQNQVEVARSLLQY----- 234

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
           G        +  +PLH+AAQ+G+ E+V  LL    N +     +  G  PLH+ A +G +
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHV 291

Query: 122 QVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGM 179
            V   L +         ATT    T LH+   +  ++ +KFL+   +  D +NAK   G 
Sbjct: 292 PVADVLIKHGVMV---DATTRMGYTPLHVASHYGNIKLVKFLLQ--HQAD-VNAKTKLGY 345

Query: 180 SILHLAVADKQIEV 193
           S LH A      ++
Sbjct: 346 SPLHQAAQQGHTDI 359

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 4e-23
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 27/195 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G+   +  LLE +    +  +      TPLH+AA  GH++    +L +     
Sbjct: 84  LHCAARIGHTNMVKLLLENNA---NPNLATTAGHTPLHIAAREGHVETVLALLEK----- 135

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
                 +  +  +PLH+AA+ G V + + LL+   +P+   A   +G  PLH+A     +
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNL 192

Query: 122 QV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYG 178
            +   L+      P   ++      T LH+  K NQ+E  + L+         NA+   G
Sbjct: 193 DIVKLLLPR-GGSP---HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQG 245

Query: 179 MSILHLAVADKQIEV 193
           ++ LHLA  +   E+
Sbjct: 246 VTPLHLAAQEGHAEM 260

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.1 bits (235), Expect = 5e-23
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 21/192 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ AS  G++  +  LL++          N   ETPLH+AA  GH + AK +L+      
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQN----- 69

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
                       +PLH AA+ G+  +VK LL+   NP+        G  PLH+AA +G +
Sbjct: 70  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN---LATTAGHTPLHIAAREGHV 126

Query: 122 QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSI 181
           +  V     +  +    T    T LH+  K+ ++   + L+    D    NA    G++ 
Sbjct: 127 ET-VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE--RDAH-PNAAGKNGLTP 182

Query: 182 LHLAVADKQIEV 193
           LH+AV    +++
Sbjct: 183 LHVAVHHNNLDI 194

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 93.3 bits (233), Expect = 8e-23
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 39/201 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+ +  +     LL+           +    TPLH+AA  GH +    +L +     
Sbjct: 216 LHIAAKQNQVEVARSLLQYGG---SANAESVQGVTPLHLAAQEGHAEMVALLLSK----- 267

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
                  +    +PLH+ AQ+G+V +   L++  V  D   A    G  PLH+A+  G I
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNI 324

Query: 122 QVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLN 172
           ++            +         A T    + LH   +    + +  L+   N     N
Sbjct: 325 KL----------VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--NGAS-PN 371

Query: 173 AKDDYGMSILHLAVADKQIEV 193
                G + L +A     I V
Sbjct: 372 EVSSDGTTPLAIAKRLGYISV 392

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.2 bits (230), Expect = 2e-22
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 17/190 (8%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G+      LL+            +  +TPLH AA  GH +  K +L       
Sbjct: 51  LHMAARAGHTEVAKYLLQNKA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLE-----N 102

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
                   +   +PLH+AA++G+VE V  LL+            G  PLH+AA  G+++V
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRV 161

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
             +L   R     A      T LH+ V HN L+ +K L+         ++    G + LH
Sbjct: 162 -AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP--RGGS-PHSPAWNGYTPLH 217

Query: 184 LAVADKQIEV 193
           +A    Q+EV
Sbjct: 218 IAAKQNQVEV 227

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
            TPLHVA+  GHL   K +L+R     G      + +  +PLHMAA+ G+ E+ K LLQ 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE 156
              +  A+  D + PLH AA  G   + V L           T    T LH+  +   +E
Sbjct: 70  KAKVN-AKAKDDQTPLHCAARIGHTNM-VKLLLENNANPNLATTAGHTPLHIAAREGHVE 127

Query: 157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            +  L+               G + LH+A    ++ V
Sbjct: 128 TVLALLEKEAS---QACMTKKGFTPLHVAAKYGKVRV 161

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 6e-16
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF 128
                +PLH+A+  G++ IVK LLQ   +P+     +V    PLHMAA  G  +V     
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEV-AKYL 66

Query: 129 RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD 188
                   A     +T LH   +      +K L+    +    N     G + LH+A  +
Sbjct: 67  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---PNLATTAGHTPLHIAARE 123

Query: 189 KQIEV 193
             +E 
Sbjct: 124 GHVET 128

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
                G  PLH+A+  G + + V     R  +   + +  ET LH+  +    E  K+L+
Sbjct: 9   GGGESGLTPLHVASFMGHLPI-VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              N    +NAK     + LH A       +
Sbjct: 68  Q--NKAK-VNAKAKDDQTPLHCAARIGHTNM 95

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 92.7 bits (231), Expect = 1e-23
 Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L          T  + +        +V  N      L  ++L G  D  + I+       
Sbjct: 9   LPPGKRTNLRKTGSERIAHGM----RVKFNPLPLALLLDSSLEGEFDLVQRIIYE----- 59

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKG 119
                  +    + LH A   G+ EIVK L+Q    VN     A D DG  PLH AA   
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAASCN 114

Query: 120 RIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
            +QV   LV+   A  FA   + + +       ++    +  +FL  +      +   + 
Sbjct: 115 NVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK---MGIMNK 170

Query: 177 YGMSILHLAVADKQIEV 193
             +  L         E+
Sbjct: 171 GVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 28/165 (16%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG---ELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
           +  L             E +       G   + +    + L  ++ +G  ++V+ ++   
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAH-----GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 98  PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSETVLHL 148
            D     + +G   LH A   G  ++            +         A      T LH 
Sbjct: 61  DDPS-LPNDEGITALHNAVCAGHTEI----------VKFLVQFGVNVNAADSDGWTPLHC 109

Query: 149 CVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
               N ++  KFLV        +   D    +     + +   + 
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 105 DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI 164
           ++ G+  L         +   +                  +L       + + ++ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG--MRVKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 165 MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           ++D    +  +D G++ LH AV     E+
Sbjct: 60  VDD---PSLPNDEGITALHNAVCAGHTEI 85

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 90.5 bits (226), Expect = 2e-23
 Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 32/170 (18%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ- 95
           N   +  L  AA  G ++  K++     V   +++ R+S+PLH AA    V +V+ LLQ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 96  ---VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSE 143
              V+     A+D  G  PLH A   G  +V          A              +W  
Sbjct: 65  GADVH-----AKDKGGLVPLHNACSYGHYEV----------AELLVKHGAVVNVADLWKF 109

Query: 144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           T LH      + E  K L+   +  D    K+  G + L L   D   ++
Sbjct: 110 TPLHEAAAKGKYEICKLLLQ--HGAD-PTKKNRDGNTPLDLV-KDGDTDI 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 42/211 (19%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKV---VTNRHHETPLHVAALRGHLDFAKEILR 61
           +S L+ A +       ++++ Q  +  D       N   +TPLH+A +    + A E L 
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQ--VKGDLAFLNFQNNLQQTPLHLAVITNQPEIA-EAL- 64

Query: 62  RTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL-----ARDVDGRNPL 112
              + AG      D R ++PLH+A ++G +  V  L Q      L     A + +G   L
Sbjct: 65  ---LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 113 HMAAMKGRIQVL---------VDLFRARPFAAYATTIWS-ETVLHLCVKHNQLEALKFLV 162
           H+A++ G + ++         V+          A    +  T LHL V     + +  L+
Sbjct: 122 HLASIHGYLGIVELLVSLGADVN----------AQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                 D +N     G S   L        +
Sbjct: 172 K--CGAD-VNRVTYQGYSPYQLTWGRPSTRI 199

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 32/201 (15%)

Query: 8   LYEASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL----- 60
           L+ A +         LL    DP + D         TPLH+A  +G L     +      
Sbjct: 49  LHLAVITNQPEIAEALLGAGCDPELRDF-----RGNTPLHLACEQGCLASVGVLTQSCTT 103

Query: 61  RRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARD-VDGRNPLHMA 115
                +    +    + LH+A+  GY+ IV+ L+     VN     A++  +GR  LH+A
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-----AQEPCNGRTALHLA 158

Query: 116 AMKGRIQVLVDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLN 172
                  + V L     A        T    +   L          + L  +  +     
Sbjct: 159 VDLQNPDL-VSLLLKCGADV---NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE---NL 211

Query: 173 AKDDYGMSILHLAVADKQIEV 193
                           +  E 
Sbjct: 212 QMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 69  ELDSRRSSPLHMAAQKGYVEIVKELLQV------NPDMCLARDVDGRNPLHMAAMKGRIQ 122
           +L     S LH+A       +  E+++         +    ++   + PLH+A +  + +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN---FQNNLQQTPLHLAVITNQPE 59

Query: 123 VLVDLFRARPFAAY--ATTIWSETVLHLCVKHNQLEALKFLVS---IMNDRDFLNAKDDY 177
           +   L  A               T LHL  +   L ++  L       +    L A +  
Sbjct: 60  IAEALLGAG---CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116

Query: 178 GMSILHLAVADKQIEV 193
           G + LHLA     + +
Sbjct: 117 GHTCLHLASIHGYLGI 132

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ AS+ G +  +  L+     +  +     +  T LH+A    + D    +L    +  
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQ--EPCNGRTALHLAVDLQNPDLV-SLL----LKC 173

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           G     +  +  SP  +   +    I ++L Q+  +  L    +  +           + 
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN-LQMLPESEDEESYDTESEFTEF 232

Query: 124 LVD 126
             D
Sbjct: 233 TED 235

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 91.5 bits (228), Expect = 3e-23
 Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 35/177 (19%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ- 95
           E+PL +AA    +    ++L       G    +  +   + LH+AA    +E    L++ 
Sbjct: 4   ESPLLLAAKENDVQALSKLL----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59

Query: 96  ---VNPDMCLARDVDGRNPLHMAAMKGR---IQVLV---------DLFRARPFAAYATTI 140
              +  +   +   +G+  LH+A +      ++ L+                +  +    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 141 WSETVLHLCVKHNQLEALKFLVS----IMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           + E  L         E ++ L+     I        A+D  G ++LH+ +       
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADI-------RAQDSLGNTVLHILILQPNKTF 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.0 bits (193), Expect = 3e-18
 Identities = 42/224 (18%), Positives = 74/224 (33%), Gaps = 50/224 (22%)

Query: 5   ESLLYEASVEGNITTLLQLLEQ---DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILR 61
           ES L  A+ E ++  L +LL+    +             ET LH+AAL  +L+ A  ++ 
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-----MGETALHIAALYDNLEAAMVLME 58

Query: 62  R----TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ----VN--------PDMCLARD 105
                             + LH+A     V +V+ LL     V+                
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 106 VDGRNPLHMAAMKGRIQVL---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLE 156
             G +PL  AA  G  +++         +           A      TVLH+ +      
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADIR----------AQDSLGNTVLHILILQPNKT 168

Query: 157 ----ALKFLVSI---MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                   L+S     + +      ++ G++   LA  +  I +
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS--IM 165
             +PL +AA +  +Q L  L +      +      ET LH+   ++ LEA   L+     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 166 NDRDFLNAKDDYGMSILHLAVADKQIEV 193
              + + ++   G + LH+AV ++ + +
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNL 90

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.0 bits (232), Expect = 5e-23
 Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 24/171 (14%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ- 95
           ETPL  A    + +    ++   P  +       + + +S LH A    + ++    ++ 
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 96  -VNPDMCLARDVDGRNPLHMAAMKGRIQV---LV----DLFRARPFAAYATTI-----WS 142
            ++ +     D +   PL+++     + +   L+                TT+       
Sbjct: 234 GIDVN---MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290

Query: 143 ETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              +      ++ E L+ L   +++   +    + G              V
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDE---VVRSLNTGAGGAVKRKKKAAPAV 338

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.6 bits (218), Expect = 6e-21
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 27/196 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLI--LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           L  A    N   L  +++  P    L     N+   + LH A L    D A   +     
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM--- 233

Query: 66  LAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM------------CLARDVDGR 109
             G      D+  + PL+++ +   V + KELLQ                  L   V   
Sbjct: 234 --GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291

Query: 110 NPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD 169
           + +  AA   + +V + L + +      +            K       +  ++      
Sbjct: 292 DFVPAAADPSKQEV-LQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA--PSAP 348

Query: 170 FLNAKDDYGMSILHLA 185
            +  +         ++
Sbjct: 349 -VRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 30/194 (15%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           ++ A +      ++ L+E               + P  +       +  +       + +
Sbjct: 88  IHLAVMANKTDLVVALVEG---------AKERGQMPESLLNECDEREVNE-------IGS 131

Query: 68  GELDSRRSSPLHMAAQKG--YVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
                +  + LH     G  Y+E++K L+Q   +P    A+D     PL  A      + 
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT---AKDKADETPLMRAMEFRNREA 188

Query: 124 ---LVDLFRARPFAAY-ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGM 179
              ++D   ++             + LH  +  N  +     V      D +N +D+   
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE--MGID-VNMEDNEHT 245

Query: 180 SILHLAVADKQIEV 193
             L+L+V    + +
Sbjct: 246 VPLYLSVRAAMVLL 259

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 37/189 (19%)

Query: 31  LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGY 86
           L+++ ++  +   +HVAA +G  D  + ++       G      +    + LH+A + G 
Sbjct: 11  LNRIKSDDENMEKIHVAARKGQTDEVRRLIET-----GVSPTIQNRFGCTALHLACKFGC 65

Query: 87  VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV---LV-----DLFRARPFAAY-- 136
           V+  K L  V           G+ P+H+A M  +  +   LV                  
Sbjct: 66  VDTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECD 122

Query: 137 ----------ATTIWSETVLHLCVK--HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL 184
                           +T LH CV      LE +K LV          AKD    + L  
Sbjct: 123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ--LGAS-PTAKDKADETPLMR 179

Query: 185 AVADKQIEV 193
           A+  +  E 
Sbjct: 180 AMEFRNREA 188

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.9 bits (227), Expect = 6e-23
 Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 34/199 (17%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L EA+   ++  +  L++           +    T LH+AA +GH +  + +L    +  
Sbjct: 48  LMEAAENNHLEAVKYLIKAGA---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
              D    +P+  A +  +V++VK LL     +N      RD +    LH AA  G + +
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-----IRDNEENICLHWAAFSGCVDI 159

Query: 124 LVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAK 174
                     A           A  I  ++ LH+  + N+ + +   +S   D D +  K
Sbjct: 160 ----------AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS--RDSD-VTLK 206

Query: 175 DDYGMSILHLAVADKQIEV 193
           +  G + L  A  + Q+  
Sbjct: 207 NKEGETPLQCASLNSQVWS 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.9 bits (219), Expect = 7e-22
 Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 40/202 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G++     L++    I      +    TPL  AA   HL+   + L    + A
Sbjct: 15  LHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAV-KYL----IKA 66

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAMKGR 120
           G      D+  S+ LH+AA+KG+ E+V+ LL    ++ +    +D  G  P+  A     
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN---CQDDGGWTPMIWATEYKH 123

Query: 121 IQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFL 171
           + +                               LH       ++  + L++   D   L
Sbjct: 124 VDL----------VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD---L 170

Query: 172 NAKDDYGMSILHLAVADKQIEV 193
           +A + +G S LH+A  + + + 
Sbjct: 171 HAVNIHGDSPLHIAARENRYDC 192

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.9 bits (214), Expect = 4e-21
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
            +PLH AA  GH+D    +L    V AG         + +PL  AA+  ++E VK L++ 
Sbjct: 12  RSPLHAAAEAGHVDIC-HML----VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE 156
              +   +D +G   LH+AA KG  +V+  L                T +    ++  ++
Sbjct: 67  GALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125

Query: 157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            +K L+S  +D   +N +D+     LH A     +++
Sbjct: 126 LVKLLLSKGSD---INIRDNEENICLHWAAFSGCVDI 159

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.8 bits (193), Expect = 5e-18
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 13/160 (8%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+ +G+   +  LL    +  D    +    TP+  A    H+D   ++L    +  
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPMIWATEYKHVDLV-KLL----LSK 133

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           G      D+  +  LH AA  G V+I + LL    D+  A ++ G +PLH+AA + R   
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDC 192

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
            V LF +R           ET L     ++Q+ +   +  
Sbjct: 193 -VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
              + SPLH AA+ G+V+I   L+Q    ++         D R PL  AA    ++  V 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANID-----TCSEDQRTPLMEAAENNHLEA-VK 61

Query: 127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                            T LHL  K    E +++L+S  N +  +N +DD G + +  A 
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS--NGQMDVNCQDDGGWTPMIWAT 119

Query: 187 ADKQIEV 193
             K +++
Sbjct: 120 EYKHVDL 126

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.2 bits (129), Expect = 5e-09
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
               + R+PLH AA  G + +   +           +    T L    ++N LEA+K+L+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                   ++ KD  G + LHLA      EV
Sbjct: 65  KAGAL---VDPKDAEGSTCLHLAAKKGHYEV 92

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.8 bits (128), Expect = 7e-09
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G +     LL       D    N H ++PLH+AA     D     L R     
Sbjct: 148 LHWAAFSGCVDIAEILLAAKC---DLHAVNIHGDSPLHIAARENRYDCVVLFLSR----- 199

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPD 99
                  +    +PL  A+    V    ++ +   D
Sbjct: 200 DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 92.7 bits (231), Expect = 8e-23
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 34/210 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLIL-----DKVVTNRHHETPLHVAALRGHLDFAKEILRR 62
           L+  +   +      L+  +         D    +    TPL +A L          L  
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV-AYL-- 185

Query: 63  TPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ-----VNPDMCLARDVDGRNPLH 113
             + AG      +    S LH AA      ++  +L       + +     D +G   L 
Sbjct: 186 --MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE---ELDRNGMTALM 240

Query: 114 MAAMKGRIQVL----------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
           + A       +            +         +      T LH   + + +  +K+LV 
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300

Query: 164 IMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                +  + +D+ G + + LA  + +IEV
Sbjct: 301 -EKGSN-KDKQDEDGKTPIMLAAQEGRIEV 328

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 14/189 (7%)

Query: 12  SVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD 71
           S+  +  +LL+      +   +     +   P       G+     +       +  E +
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLG-DFNHTNLQIPTEPE 91

Query: 72  SRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR 131
                 LH  A  G   I + + + + +  +      R  LH  A     +   DL    
Sbjct: 92  PESPIKLHTEA-AGSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHE 148

Query: 132 PFAAY-------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL 184
                       A      T L L V   +   + +L+    D       +    S LH 
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQ 205

Query: 185 AVADKQIEV 193
           A A++   +
Sbjct: 206 AAANRDFGM 214

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 24/201 (11%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L  A +      +  L++      D  + N+   + LH AA          +L  T +  
Sbjct: 170 LMLAVLARRRRLVAYLMKAGA---DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 68  --GELDSRRSSPLHMAAQKGY---VEIVKELL----QVNPDMCL---ARDVDGRNPLHMA 115
              ELD    + L + A       V   K L+    +V+ D      +    GR  LH A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

Query: 116 AMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLN 172
           A    + +   LV    +            +T + L  +  ++E + +L+        + 
Sbjct: 287 AQVSNMPIVKYLVGEKGSNK---DKQDEDGKTPIMLAAQEGRIEVVMYLIQ--QGAS-VE 340

Query: 173 AKDDYGMSILHLAVADKQIEV 193
           A D    +   LA A+    +
Sbjct: 341 AVDATDHTARQLAQANNHHNI 361

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.9 bits (203), Expect = 8e-19
 Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 32/202 (15%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
             +    GN            +  +           LH  A  G     + I R +  + 
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQIPTEP---EPESPIKLHTEA-AGSYAITEPITRESVNII 120

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL-------ARDVDGRNPLHMAAMKGR 120
               +R  + LH  A     E  ++L+      C+       A D D   PL +A +  R
Sbjct: 121 DPRHNR--TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

Query: 121 IQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFL 171
            ++           AY                + LH    +     + ++++    +  +
Sbjct: 179 RRL----------VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228

Query: 172 NAKDDYGMSILHLAVADKQIEV 193
              D  GM+ L +   ++  + 
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQ 250

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 31/182 (17%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAK---------- 57
           L++A+   +   ++ +L    L  D    +R+  T L + A     D             
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 58  EILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL-----QVNPDMCLARDVDGRNPL 112
           ++             +  + LH AAQ   + IVK L+       +      +D DG+ P+
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----KQDEDGKTPI 317

Query: 113 HMAAMKGRIQV---LVDLFRARPFAAY--ATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
            +AA +GRI+V   L+         A   A      T   L   +N    +        +
Sbjct: 318 MLAAQEGRIEVVMYLIQQG------ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

Query: 168 RD 169
           R+
Sbjct: 372 RE 373

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 91.0 bits (227), Expect = 1e-22
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 21/191 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+EA + G+++ +  LL+    +           TPL  A + G  D    +L+      
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNGV---TADWHTPLFNACVSGSWDCVNLLLQH----- 147

Query: 68  G---ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQ 122
           G   + +S  +SP+H AA++G+VE V  L+    N D    +      PL++A    +  
Sbjct: 148 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPLYLACENQQRA 204

Query: 123 VLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSIL 182
            +  L  +   A        ++ LH  V+    E    L+    D     AK+  G   +
Sbjct: 205 CVKKLLESG--ADVNQGKGQDSPLHAVVRTASEELACLLMDFGAD---TQAKNAEGKRPV 259

Query: 183 HLAVADKQIEV 193
            L   +  +  
Sbjct: 260 ELVPPESPLAQ 270

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.5 bits (210), Expect = 4e-20
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 29/171 (16%)

Query: 34  VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEI 89
           +       +P+H AA+ GH    + ++ +     G     + +   SPLH A   G++  
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLISQ-----GWAVNIITADHVSPLHEACLGGHLSC 107

Query: 90  VKELL----QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF---RARPFAAYATTIWS 142
           VK LL    QVN         D   PL  A + G     V+L     A            
Sbjct: 108 VKILLKHGAQVN-----GVTADWHTPLFNACVSGSWDC-VNLLLQHGASVQPESDL---- 157

Query: 143 ETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            + +H   +   +E +  L++     + ++ K  +  + L+LA  ++Q   
Sbjct: 158 ASPIHEAARRGHVECVNSLIA--YGGN-IDHKISHLGTPLYLACENQQRAC 205

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.3 bits (207), Expect = 9e-20
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 45/203 (22%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           ++EA++ G+  +L  L+ Q        +    H +PLH A L GHL   K +L+      
Sbjct: 63  MHEAAIHGHQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLKH----- 114

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKG 119
           G     + +   +PL  A   G  + V  LLQ    V P+       D  +P+H AA +G
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES------DLASPIHEAARRG 168

Query: 120 RIQVL---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF 170
            ++ +         +D                 T L+L  ++ Q   +K L+   +  D 
Sbjct: 169 HVECVNSLIAYGGNID----------HKISHLGTPLYLACENQQRACVKKLLE--SGAD- 215

Query: 171 LNAKDDYGMSILHLAVADKQIEV 193
           +N +     S LH  V     E+
Sbjct: 216 VN-QGKGQDSPLHAVVRTASEEL 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.2 bits (204), Expect = 3e-19
 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 30/192 (15%)

Query: 11  ASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG 68
            S   +      L+ +      +D          P       G    +       P++  
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN------PLMGD 55

Query: 69  ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQV- 123
            +     SP+H AA  G+   ++ L+     VN         D  +PLH A + G +   
Sbjct: 56  AVSDW--SPMHEAAIHGHQLSLRNLISQGWAVN-----IITADHVSPLHEACLGGHLSCV 108

Query: 124 --LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSI 181
             L+    A+       T    T L         + +  L+   +    +  + D   S 
Sbjct: 109 KILLK-HGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQ--HGAS-VQPESD-LASP 160

Query: 182 LHLAVADKQIEV 193
           +H A     +E 
Sbjct: 161 IHEAARRGHVEC 172

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 20/124 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           ++EA+  G++  +  L+       +      H  TPL++A         K++L       
Sbjct: 161 IHEAARRGHVECVNSLIAYGG---NIDHKISHLGTPLYLACENQQRACVKKLLES----- 212

Query: 68  G---ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGR 120
           G        + SPLH   +    E+   L+            A++ +G+ P+ +   +  
Sbjct: 213 GADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ-----AKNAEGKRPVELVPPESP 267

Query: 121 IQVL 124
           +  L
Sbjct: 268 LAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.2 bits (173), Expect = 5e-15
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 27/134 (20%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELL-- 94
            +P+H AA RGH++    ++       G       S   +PL++A +      VK+LL  
Sbjct: 158 ASPIHEAARRGHVECVNSLIAY-----GGNIDHKISHLGTPLYLACENQQRACVKKLLES 212

Query: 95  --QVNPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLC 149
              VN      +     +PLH        ++   L+D F A      A     +  + L 
Sbjct: 213 GADVN------QGKGQDSPLHAVVRTASEELACLLMD-FGADT---QAKNAEGKRPVELV 262

Query: 150 VKHNQLEALKFLVS 163
              + L  L FL  
Sbjct: 263 PPESPLAQL-FLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.4 bits (145), Expect = 4e-11
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 16/152 (10%)

Query: 46  VAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           + +   H   +  ++ R     G     +D ++   +  +   G  +     L  NP M 
Sbjct: 1   MGSSHHHHHHSSGLVPR-----GSHMASMDGKQG-GMDGSKPAGPRDFPGIRLLSNPLM- 53

Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
               V   +P+H AA+ G     +    ++ +A    T    + LH       L  +K L
Sbjct: 54  -GDAVSDWSPMHEAAIHGHQLS-LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           +   +    +N       + L  A      + 
Sbjct: 112 LK--HGAQ-VNGVTADWHTPLFNACVSGSWDC 140

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.6 bits (226), Expect = 2e-22
 Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 33/203 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L +A    ++  + QLLE    +  +        TPLH A      D   E+L    +  
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIV-ELL----LRH 61

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKG 119
           G          ++P  +AA  G V+++K  L     VN       D  G      AA+ G
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYG 116

Query: 120 RIQVL---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN-DRD 169
           +++ L         V+L R              T L    +   +E LK L+  M  D  
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-- 174

Query: 170 FLNAKDDYGMSILHLAVADKQIE 192
            +NA D+ G + L  A+      
Sbjct: 175 -VNACDNMGRNALIHALLSSDDS 196

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.4 bits (215), Expect = 7e-21
 Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 39/209 (18%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAK---------E 58
              A++ G++  L   L +     D    + +  T    AA+ G +   K          
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGA---DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 59  ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL-----QVNPDMCLARDVDGRNPLH 113
           + R+T      L    ++ L  AA+KG+VE++K LL      VN     A D  GRN L 
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-----ACDNMGRNALI 187

Query: 114 MAAMKGRIQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSI 164
            A +      +  +                        +T L L V+   L  ++ L+  
Sbjct: 188 HALLSSDDSDVEAI------THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE- 240

Query: 165 MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             +   +N  D  G + L LAV  K  ++
Sbjct: 241 -QEHIEINDTDSDGKTALLLAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 1e-19
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 27/169 (15%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
              L  A     +D  +++L     +  + +    +PLH A Q    +IV+ LL+   D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 101 CLARDVDGRNPLHMAAMKGRIQVL---------VDLFRARPFAAYATTIWSETVLHLCVK 151
              R  +G  P  +AA+ G +++L         V+              +  T       
Sbjct: 66  V-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN----------ECDFYGFTAFMEAAV 114

Query: 152 HNQLEALKFLVSI-------MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           + +++ALKFL             ++        G + L  A     +EV
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.2 bits (173), Expect = 5e-15
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 21/182 (11%)

Query: 8   LYEASVEGNITTLLQLL-------EQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL 60
             EA+V G +  L  L         +     D+    +   T L  AA +GH++  K +L
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 61  RRTPVLAGELDSRRSSPLHMAAQKG----YVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
                     D+   + L  A           I   LL    D+   R   G+ PL +A 
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAV 227

Query: 117 MKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNA 173
            K  + +   L++           T    +T L L V+    +  + L          + 
Sbjct: 228 EKKHLGLVQRLLEQEHIEI---NDTDSDGKTALLLAVELKLKKIAELLCK--RGAS-TDC 281

Query: 174 KD 175
            D
Sbjct: 282 GD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 105 DVDGRNPLHMAAMKGRIQVLVDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
            V+  + L  A     + + V       A             T LH  V+ ++ + ++ L
Sbjct: 2   AVEDNHLLIKAVQNEDVDL-VQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELL 58

Query: 162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           +   +  D    +   G +   LA     +++
Sbjct: 59  LR--HGAD-PVLRKKNGATPFLLAAIAGSVKL 87

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 7e-22
 Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 40/196 (20%)

Query: 15  GNITTLLQ-LLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----E 69
           G+   ++   + Q   + ++  T+R  ET LH+AA     D A + L    + A      
Sbjct: 1   GDAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAA-KRL----LEASADANI 53

Query: 70  LDSRRSSPLHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
            D+   +PLH A       + + L++    + D   AR  DG  PL +AA      +   
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLD---ARMHDGTTPLILAARLAVEGM--- 107

Query: 127 LFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDY 177
                              A     ++ LH     N ++A   L+   N  +  + +++ 
Sbjct: 108 -------LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK--NGAN-KDMQNNR 157

Query: 178 GMSILHLAVADKQIEV 193
             + L LA  +   E 
Sbjct: 158 EETPLFLAAREGSYET 173

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.2 bits (212), Expect = 7e-21
 Identities = 38/204 (18%), Positives = 64/204 (31%), Gaps = 44/204 (21%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+         +LLE      D  + +    TPLH A          +IL    +  
Sbjct: 29  LHLAARYSRSDAAKRLLEASA---DANIQDNMGRTPLHAAVSADAQGVF-QIL----IRN 80

Query: 68  G-----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMK 118
                       ++PL +AA+     ++++L+     VN     A D  G++ LH AA  
Sbjct: 81  RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAV 135

Query: 119 GRIQVL---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD 169
             +             D                ET L L  +    E  K L+    +R 
Sbjct: 136 NNVDAAVVLLKNGANKD----------MQNNREETPLFLAAREGSYETAKVLLDHFANR- 184

Query: 170 FLNAKDDYGMSILHLAVADKQIEV 193
             +  D        +A      ++
Sbjct: 185 --DITDHMDRLPRDIAQERMHHDI 206

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.9 bits (188), Expect = 2e-17
 Identities = 29/173 (16%), Positives = 47/173 (27%), Gaps = 39/173 (22%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A           L+      LD         TPL +AA         E L    + +
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGML-EDL----INS 114

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELL----QVNPDMCLARDVDGRNPLHMAAMKG 119
                 +D    S LH AA    V+    LL      +      ++     PL +AA +G
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-----MQNNREETPLFLAAREG 169

Query: 120 RIQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVS 163
             +           A            T         +  +    + ++ L  
Sbjct: 170 SYET----------AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.5 bits (223), Expect = 9e-22
 Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 42/192 (21%)

Query: 19  TLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRR 74
           + L L +        V+T  + +  L  AA  G+ +    +L              D R+
Sbjct: 6   SALDLADPSA---KAVLTGEYKKDELLEAARSGNEEKLMALL----TPLNVNCHASDGRK 58

Query: 75  SSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQVL------ 124
           S+PLH+AA    V IV+ LLQ    V+     A+D  G  PLH A   G  +V       
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVH-----AKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 125 ---VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSI 181
              V+          A  +W  T LH     N++E    L+S   D       + +G S 
Sbjct: 114 GACVN----------AMDLWQFTPLHEAASKNRVEVCSLLLSHGAD---PTLVNCHGKSA 160

Query: 182 LHLAVADKQIEV 193
           + +A   +  E 
Sbjct: 161 VDMAPTPELRER 172

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.9 bits (206), Expect = 3e-19
 Identities = 33/214 (15%), Positives = 65/214 (30%), Gaps = 57/214 (26%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAK-EILRRTPVL 66
           L+EA+ +  +     LL            N H ++ + +A      +    E    + + 
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 67  AG---------EL----------DSRRSSPLHMAAQKGY---VEIVKELLQ----VNPDM 100
           A          +                + LH A    +    ++ + LL+    VN   
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--- 241

Query: 101 CLARDVDGRNPLHMAAMKGRIQVL---------VDLFRARPFAAYATTIWSETVLHLCVK 151
              ++ D   PLH+AA +    V+         ++          A     +T LH    
Sbjct: 242 --EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN----------ALDSLGQTALHRAAL 289

Query: 152 HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
              L+  + L+S     D  +     G +   + 
Sbjct: 290 AGHLQTCRLLLS--YGSD-PSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 35/222 (15%), Positives = 63/222 (28%), Gaps = 57/222 (25%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A   G+      LL+           +    TPLH AA +  ++    +L       
Sbjct: 95  LHNACSYGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVEVCSLLLSH----- 146

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLAR------------------- 104
           G     ++    S + MA      E +    + +  +  AR                   
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206

Query: 105 -DVDGRNPLHMAAMKGR------IQVL------VDLFRARPFAAYATTIWSETVLHLCVK 151
                   LH A            ++L      V+                 T LH+  +
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVN----------EKNKDFMTPLHVAAE 256

Query: 152 HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
               + ++ L    +    +NA D  G + LH A     ++ 
Sbjct: 257 RAHNDVMEVLHK--HGAK-MNALDSLGQTALHRAALAGHLQT 295

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIV 90
             N+   TPLHVAA R H D   E+L       G     LDS   + LH AA  G+++  
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVM-EVL----HKHGAKMNALDSLGQTALHRAALAGHLQTC 296

Query: 91  KELLQ--VNPDMCLARDVDGRNPLHMAA 116
           + LL    +P       + G     M  
Sbjct: 297 RLLLSYGSDPS---IISLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+   +   +  L +           +   +T LH AAL GHL   + +L       
Sbjct: 251 LHVAAERAHNDVMEVLHKHGA---KMNALDSLGQTALHRAALAGHLQTCRLLLSY----- 302

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG 119
           G     +  +  +   M       E V+++L  +  M    DVD    L  A+  G
Sbjct: 303 GSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMR-TSDVDY--RLLEASKAG 350

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.1 bits (217), Expect = 1e-21
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           +TPLH+A ++G+L     ++       G      ++ R +PLH+A       +V+ L+  
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLF-QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHN 153
                 A D  G+   H+A           L+D          A      T LH+ V   
Sbjct: 69  GASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127

Query: 154 QLEALKFLVSIMNDRDFLNAKD-DYGMSILHLAVADKQIEV 193
             E ++ L+    D   ++A D   G S L  AV +  + +
Sbjct: 128 CQETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNSLSM 165

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.4 bits (215), Expect = 4e-21
 Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 22/197 (11%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKV-VTNRHHETPLHVAALRGHLDFAKEILRRTPVL 66
           L+ A V+GN+  + +L+        ++ + N   +TPLH+A +         +L    V 
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV-RLL----VT 67

Query: 67  AG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL---ARDVDGRNPLHMAAMKG 119
           AG     LD    +  H+A +      ++ LL       L   AR+ DG   LH+A    
Sbjct: 68  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127

Query: 120 RIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
             +    L++   A   A    +    + L   V++N L  ++ L+   +  + +NA+  
Sbjct: 128 CQETVQLLLER-GADIDAVDIKSGR--SPLIHAVENNSLSMVQLLLQ--HGAN-VNAQMY 181

Query: 177 YGMSILHLAVADKQIEV 193
            G S LH A     + +
Sbjct: 182 SGSSALHSASGRGLLPL 198

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.2 bits (212), Expect = 9e-21
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 28/198 (14%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A +    + +  L+      +     +RH +T  H+A         + +L       
Sbjct: 50  LHLAVITTLPSVVRLLVTAGASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 68  G---ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
                 +    + LH+A      E V+ LL+   D+       GR+PL  A     + ++
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166

Query: 125 ---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKD 175
                    V+          A      + LH       L  ++ LV   +  D  + K+
Sbjct: 167 QLLLQHGANVN----------AQMYSGSSALHSASGRGLLPLVRTLVR--SGAD-SSLKN 213

Query: 176 DYGMSILHLAVADKQIEV 193
            +  + L +A + + I++
Sbjct: 214 CHNDTPLMVARSRRVIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.9 bits (193), Expect = 5e-18
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 31/171 (18%)

Query: 8   LYEASVEGNITTLLQLLEQD-PLILDKVVTNRHHETPLHVAALRGHLDFAKE-ILRRTPV 65
            + A    + T L  LL+   P  LD    N    T LHVA      +  +  + R   +
Sbjct: 83  AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRI 121
            A ++ S R SPL  A +   + +V+ LLQ    VN     A+   G + LH A+ +G +
Sbjct: 143 DAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVN-----AQMYSGSSALHSASGRGLL 196

Query: 122 QVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVS 163
            +                           ++T L +      ++ L+   +
Sbjct: 197 PL----------VRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 4e-15
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELL--------QVNPDMCLARDVDGRNPLHMAAM 117
           +A   D    +PLH+A  +G +  V  L+        +++       +   + PLH+A +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----IYNNLRQTPLHLAVI 55

Query: 118 KGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF-LNAK 174
                V+  L    A P    A     +T  HL  +H     L+ L+         L A+
Sbjct: 56  TTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 175 DDYGMSILHLAVADKQIEV 193
           +  G++ LH+AV  +  E 
Sbjct: 113 NYDGLTALHVAVNTECQET 131

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 84.7 bits (211), Expect = 3e-21
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 24/164 (14%)

Query: 39  HHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELL 94
            +   +H  A +G + +    + +            D    +PL  AA  G + +V+ LL
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 95  QV--NPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLC 149
           Q   +P           + L +A  KG   +   L+D                 T L   
Sbjct: 57  QNGADPQ---LLGKGRESALSLACSKGYTDIVKMLLD-CGVDV---NEYDWNGGTPLLYA 109

Query: 150 VKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           V  N ++ +K L+   +  D    + D G + + LAVA     V
Sbjct: 110 VHGNHVKCVKMLLE--SGAD-PTIETDSGYNSMDLAVALGYRSV 150

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.9 bits (201), Expect = 7e-20
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 35/182 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           +++ + +G +  L   +EQ+        T+    TPL  AA  G +   + +L+      
Sbjct: 7   VHQLAAQGEMLYLATRIEQEN---VINHTDEEGFTPLMWAAAHGQIAVVEFLLQN----- 58

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           G     L   R S L +A  KGY +IVK LL    D+    D +G  PL  A     ++ 
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKC 117

Query: 124 L---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAK 174
           +                       T      + L V        + + S +     L   
Sbjct: 118 VKMLLESGADPT----------IETDSGYNSMDLAVALGYRSVQQVIESHLLK---LLQN 164

Query: 175 DD 176
             
Sbjct: 165 IK 166

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 84.0 bits (209), Expect = 3e-21
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 39/169 (23%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG---ELDSRRSSPLHMAAQKGYVEIVKELLQ-- 95
              L  AA  G  D  + ++       G     D   +SPLH+AAQ G+    + LL+  
Sbjct: 3   GKKLLEAARAGQDDEVRILMAN-----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 96  --VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSET 144
              +     AR    R PLHMAA +G   +                      A  +   T
Sbjct: 58  VSRD-----ARTKVDRTPLHMAASEGHANI----------VEVLLKHGADVNAKDMLKMT 102

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            LH   +HN  E ++ L+      D ++ +  +  +   +++ +   ++
Sbjct: 103 ALHWATEHNHQEVVELLIK--YGAD-VHTQSKFCKTAFDISIDNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.3 bits (158), Expect = 1e-13
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 18/95 (18%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKE 92
            +   TPLH+AA  GH +   E+L    +  G      D  + + LH A +  + E+V+ 
Sbjct: 64  TKVDRTPLHMAASEGHANIV-EVL----LKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 93  LLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           L++    V+      +    +    ++   G   +
Sbjct: 119 LIKYGADVH-----TQSKFCKTAFDISIDNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.8 bits (110), Expect = 8e-07
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ 95
            T LH A    H +   E+L    +  G           +   ++   G  ++  E+LQ
Sbjct: 101 MTALHWATEHNHQEVV-ELL----IKYGADVHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
           D    L  AA  G+    V +  A   A + T     + LHL  ++      + L+    
Sbjct: 1   DLGKKLLEAARAGQDDE-VRILMANG-APFTTDWLGTSPLHLAAQYGHFSTTEVLLR--A 56

Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
                +A+     + LH+A ++    +
Sbjct: 57  GVS-RDARTKVDRTPLHMAASEGHANI 82

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.0 bits (209), Expect = 6e-21
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 40/169 (23%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ-- 95
             L  AA  G  D    IL    +  G      D+   +PLH+AA  G++EIV+ LL+  
Sbjct: 16  KKLLEAARAGRDDEV-RIL----MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 96  --VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSET 144
             VN     A D  G  PL +AA+ G +++                      A  +   T
Sbjct: 71  ADVN-----AVDHAGMTPLRLAALFGHLEI----------VEVLLKNGADVNANDMEGHT 115

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            LHL      LE ++ L+   N  D +NA+D +G +   +++ +   ++
Sbjct: 116 PLHLAAMFGHLEIVEVLLK--NGAD-VNAQDKFGKTAFDISIDNGNEDL 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.4 bits (179), Expect = 1e-16
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 40/173 (23%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L EA+  G    +  L+       D    +    TPLH+AA  GHL+   E+L    +  
Sbjct: 18  LLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIV-EVL----LKN 69

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKG 119
           G     +D    +PL +AA  G++EIV+ LL+    VN     A D++G  PLH+AAM G
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-----ANDMEGHTPLHLAAMFG 124

Query: 120 RIQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVS 163
            +++                      A   + +T   + + +   +  + L  
Sbjct: 125 HLEI----------VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L  A++ G++  +  LL+      D    +    TPLH+AA+ GHL+   E+L    +  
Sbjct: 84  LRLAALFGHLEIVEVLLKNGA---DVNANDMEGHTPLHLAAMFGHLEIV-EVL----LKN 135

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
           G      D    +   ++   G  ++ + L ++N
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 85.3 bits (212), Expect = 1e-20
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 21/169 (12%)

Query: 41  ETPLHVAALRGHLDFAKEILRR--TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
           +T LH+A +  H  F   +L            +    + LH+AA  G    V++L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 99  DMCLARDVDGRNPLHMAAMKGRIQV--------------LVDLFRARPFAAYATTIWSET 144
            +    +  G   LH+A                        D +  +       T  +  
Sbjct: 70  GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                  + + E              L A++  G + LH+AV  K  E+
Sbjct: 129 -AVDSQPNPENEEEPRDEDWRLQ---LEAENYDGHTPLHVAVIHKDAEM 173

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 39/206 (18%), Positives = 66/206 (32%), Gaps = 34/206 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR----- 62
           L+ A++ G  +T+ +L      +L      R   T LH+A        A  +L+      
Sbjct: 49  LHLAAILGEASTVEKLYAAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 63  -------TPVLAGELDSRRSSPLHMAAQKGYVEIVKELL-----QVNPDMCLARDVDGRN 110
                               +P  + +Q       +        Q+      A + DG  
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-----AENYDGHT 160

Query: 111 PLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
           PLH+A +    ++   L D   A       T     T LHL V+      L+ L+     
Sbjct: 161 PLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGR--TPLHLAVEAQAASVLELLLK--AG 215

Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
            D   A+   G + L  A+      +
Sbjct: 216 AD-PTARMYGGRTPLGSALLRPNPIL 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.3 bits (186), Expect = 7e-17
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 20/199 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDP----------LILDKVVTNRHHETPLHVAALRGHLDFAK 57
           L+ A      T    LL+  P          L   +  T      P  V +     +  +
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 58  EILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAM 117
                  +     +    +PLH+A      E+V+ L     D+       GR PLH+A  
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201

Query: 118 KGRIQVLVDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAK 174
                V ++L     A P    A      T L   +        + L +  +        
Sbjct: 202 AQAASV-LELLLKAGADP---TARMYGGRTPLGSALLRPNPILARLLRA--HGAP-EPED 254

Query: 175 DDYGMSILHLAVADKQIEV 193
               +S    + +D   + 
Sbjct: 255 GGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.3 bits (186), Expect = 7e-17
 Identities = 41/205 (20%), Positives = 62/205 (30%), Gaps = 29/205 (14%)

Query: 8   LYEASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           L+ A +  +   L  LL        LD    N   +T LH+AA+ G     +++      
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEASTVEKLYAA--- 67

Query: 66  LAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL------------ARDVDGR 109
             G      +    + LH+A +         LLQ  P                       
Sbjct: 68  --GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 110 NPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD 169
            P  + +                    A      T LH+ V H   E ++ L       D
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD--AGAD 183

Query: 170 FLNAKD-DYGMSILHLAVADKQIEV 193
            LN  +   G + LHLAV  +   V
Sbjct: 184 -LNKPEPTCGRTPLHLAVEAQAASV 207

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 7e-09
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALK 159
               DG   LH+A +       +D      A            +T LHL     +   ++
Sbjct: 4   YVTEDGDTALHLAVIHQHEPF-LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 160 FLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            L +       +   +  G + LHLA   +    
Sbjct: 63  KLYA--AGAG-VLVAERGGHTALHLACRVRAHTC 93

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A      + L  LL+      D         TPL  A LR +   A+ +        
Sbjct: 196 LHLAVEAQAASVLELLLKAGA---DPTARMYGGRTPLGSALLRPNPILARLLRAH----- 247

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ 95
           G    E    + SP   +      +   E  +
Sbjct: 248 GAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.4 bits (210), Expect = 2e-20
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 26/196 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A++   I  +   + +  ++    +    + TPLH A  +GHL    ++++      
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIV--DQLGGDLNSTPLHWATRQGHLSMVVQLMKY----- 98

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGR- 120
           G     +D    S +H+AAQ G+  IV  L+    + D     D +G  PL  AA +   
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGMTPLMWAAYRTHS 155

Query: 121 ---IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDY 177
               ++L+  F               T LH  V       +  L+      + ++A++  
Sbjct: 156 VDPTRLLLT-FNVSVNLG--DKYHKNTALHWAVLAGNTTVISLLLE--AGAN-VDAQNIK 209

Query: 178 GMSILHLAVADKQIEV 193
           G S L LA   K + +
Sbjct: 210 GESALDLAKQRKNVWM 225

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.9 bits (201), Expect = 3e-19
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           + +A+  G      +L+E      D    ++ + T LH AA+   +D  K       +  
Sbjct: 13  IVKATQYGIYERCRELVEAGY---DVRQPDKENVTLLHWAAINNRIDLVK-YY----ISK 64

Query: 68  G----ELDSRR-SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQ 122
           G    +L     S+PLH A ++G++ +V +L++   D     D +G + +H+AA  G   
Sbjct: 65  GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTS 123

Query: 123 VLVDLFRARPFAAY---------ATTIWSETVLHL-CVKHNQLEALKFLVSIMNDRDFLN 172
           +           AY                T L     + + ++  + L++       +N
Sbjct: 124 I----------VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VN 170

Query: 173 AKDDY-GMSILHLAVADKQIEV 193
             D Y   + LH AV      V
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTV 192

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 78.2 bits (194), Expect = 3e-18
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 36  TNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVK 91
            + +    +  A   G  +  +E++       G    + D    + LH AA    +++VK
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEA-----GYDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 92  ELLQV--NPDMCLARDVD-GRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVL 146
             +      D       D    PLH A  +G + ++V L +  A P           + +
Sbjct: 60  YYISKGAIVD---QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP---SLIDGEGCSCI 113

Query: 147 HLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
           HL  +      + +L++   D   ++  D  GM+ L  A
Sbjct: 114 HLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+ +G+++ ++QL++      D  + +    + +H+AA  GH      ++ +     
Sbjct: 80  LHWATRQGHLSMVVQLMKYGA---DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK----- 131

Query: 68  G----ELDSRRSSPLHMAAQKGY-VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQ 122
           G     +D    +PL  AA + + V+  + LL  N  + L         LH A + G   
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191

Query: 123 VLVDLFRARPFAAY--ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD 169
           V+  L  A    A   A  I  E+ L L  +   +  +  L      + 
Sbjct: 192 VISLLLEAG---ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 2e-15
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 69  ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
            +D   +  +  A Q G  E  +EL++    V        D +    LH AA+  RI + 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAAINNRIDL- 57

Query: 125 VDLF---RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSI 181
           V  +    A           + T LH   +   L  +  L+    D    +  D  G S 
Sbjct: 58  VKYYISKGAIVDQ--LGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSC 112

Query: 182 LHLAVADKQIEV 193
           +HLA       +
Sbjct: 113 IHLAAQFGHTSI 124

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 2e-20
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYV 87
           D    + H  +  + A    ++      L    + AG     L++    PLH AA     
Sbjct: 23  DTFKADVHGHSASYYAIADNNVRLV-CTL----LNAGALKNLLENE--FPLHQAATLEDT 75

Query: 88  EIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF---RARPFAAYATTIWSET 144
           +IVK LL    D     D  G   L+ A   G +Q  V LF     R           +T
Sbjct: 76  KIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQT-VKLFVKKNWRLMF--YGKTGWKT 131

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             +  V  N +  + + +S +             +S +H+ + +  +++
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPS----TFDLAILLSCIHITIKNGHVDM 176

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.1 bits (209), Expect = 4e-20
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 22/192 (11%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
            Y A  + N+  +  LL    L          +E PLH AA        K +L       
Sbjct: 35  SYYAIADNNVRLVCTLLNAGALK-----NLLENEFPLHQAATLEDTKIVKILLFS----- 84

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRN-PLHMAAMKGRIQ 122
           G    + D + ++ L+ A   G ++ VK  ++ N  +       G     + A M   + 
Sbjct: 85  GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVS 143

Query: 123 VLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMS-I 181
           ++          +        + +H+ +K+  ++ +  L+  M      N  +       
Sbjct: 144 IVSYFLSEI--PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS---TNTNNSLLFIPD 198

Query: 182 LHLAVADKQIEV 193
           + LA+ +K IE+
Sbjct: 199 IKLAIDNKDIEM 210

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 39/196 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           LY A   GN+ T+   ++++  ++         +T  + A +   +      L   P   
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELL----QVNPDMCLARDVDGRNP-LHMAAMKGRIQ 122
               +   S +H+  + G+V+++  LL      N       +     P + +A     I+
Sbjct: 157 D--LAILLSCIHITIKNGHVDMMILLLDYMTSTN-----TNNSLLFIPDIKLAIDNKDIE 209

Query: 123 VL-------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKD 175
           +L       +++                +     V  +  E  K ++      +   +  
Sbjct: 210 MLQALFKYDINI---------------YSANLENVLLDDAEIAKMIIE--KHVE-YKSDS 251

Query: 176 DYGMSILHLAVADKQI 191
                 +       +I
Sbjct: 252 YTKDLDIVKNNKLDEI 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.6 bits (187), Expect = 5e-17
 Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 18/185 (9%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKE-ILRRTPVL 66
           L++A+   +   +  LL       D    +    T L+ A   G++   K  + +   ++
Sbjct: 66  LHQAATLEDTKIVKILLFSGL---DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM 122

Query: 67  AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
                  ++   + A     V IV   L   P           + +H+    G + + + 
Sbjct: 123 FYGKTGWKT-SFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDM-MI 178

Query: 127 LF---RARPFAAYATTIWSET-VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSIL 182
           L                      + L + +  +E L+ L     D + + + +   + + 
Sbjct: 179 LLLDYMTST---NTNNSLLFIPDIKLAIDNKDIEMLQALFK--YDIN-IYSANLENVLLD 232

Query: 183 HLAVA 187
              +A
Sbjct: 233 DAEIA 237

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 21/122 (17%)

Query: 78  LHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRAR 131
           L         + +K  L             DV G +  + A     +++   L++     
Sbjct: 4   LSRIN-TWKSKQLKSFLSSKDTF-----KADVHGHSASYYAIADNNVRLVCTLLNA---- 53

Query: 132 PFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI 191
              A    + +E  LH        + +K L+    D    +  DD G + L+ AV    +
Sbjct: 54  --GALKNLLENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKGNTALYYAVDSGNM 108

Query: 192 EV 193
           + 
Sbjct: 109 QT 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.8 bits (206), Expect = 2e-20
 Identities = 37/203 (18%), Positives = 81/203 (39%), Gaps = 42/203 (20%)

Query: 11  ASVEGNITTLLQLLEQ-------DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           + ++ N   + ++ ++       D L   +   + ++ TPL VA + G  +   + L   
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR---DSYNRTPLMVACMLGMENAI-DKL--- 54

Query: 64  PVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG 119
            V       + D   S+ L  A +   + I ++LL    ++   +D  G+ PL  + + G
Sbjct: 55  -VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFG 112

Query: 120 RIQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF 170
             ++          + +            +  ET L +  K+ + E +K L+ +  D   
Sbjct: 113 YSEM----------SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD--- 159

Query: 171 LNAKDDYGMSILHLAVADKQIEV 193
           ++A+D  G++    A    + EV
Sbjct: 160 ISARDLTGLTAEASARIFGRQEV 182

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.3 bits (171), Expect = 3e-15
 Identities = 34/174 (19%), Positives = 55/174 (31%), Gaps = 40/174 (22%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L  A + G    + +L+E           +    T L  A     L  A E L    +  
Sbjct: 39  LMVACMLGMENAIDKLVENFD---KLEDKDIEGSTALIWAVKNNRLGIA-EKL----LSK 90

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKG 119
           G      D    +PL  +   GY E+   LL+    VN      R+++G  PL +A+  G
Sbjct: 91  GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-----DRNLEGETPLIVASKYG 145

Query: 120 RIQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSI 164
           R ++                      A  +   T         + E +K    +
Sbjct: 146 RSEI----------VKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           ETPL VA+  G  +   + L    +  G      D    +    A   G  E++K   +V
Sbjct: 135 ETPLIVASKYGRSEIV-KKL----LELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

Query: 97  N 97
            
Sbjct: 190 R 190

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.3 bits (207), Expect = 6e-20
 Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTP--------VLAG-----ELDSRRSSPLHMAAQKGYV 87
            TPL +A+  G                     +  G     + D    + LH+AA+    
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 88  EIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETV 145
           +  K LL+   + +    +D  GR PLH A       V   L R R     A      T 
Sbjct: 71  DAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 127

Query: 146 LHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           L L  +      L+ L++   D   +NA DD G S LH A A   ++ 
Sbjct: 128 LILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDA 172

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.9 bits (206), Expect = 7e-20
 Identities = 41/202 (20%), Positives = 70/202 (34%), Gaps = 40/202 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+         +LLE      D  + +    TPLH A         + ++R     A
Sbjct: 61  LHLAARYSRSDAAKRLLEASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNR---A 114

Query: 68  GELDSR---RSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKGR 120
            +LD+R    ++PL +AA+     ++++L+     VN     A D  G++ LH AA    
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNN 169

Query: 121 IQVL---------VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFL 171
           +             D                ET L L  +    E  K L+    +R   
Sbjct: 170 VDAAVVLLKNGANKD----------MQNNREETPLFLAAREGSYETAKVLLDHFANR--- 216

Query: 172 NAKDDYGMSILHLAVADKQIEV 193
           +  D        +A      ++
Sbjct: 217 DITDHMDRLPRDIAQERMHHDI 238

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.1 bits (178), Expect = 8e-16
 Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 27/167 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A           L+      LD         TPL +AA         E L    + +
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGML-EDL----INS 146

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRI 121
                 +D    S LH AA    V+    LL+   N D    ++     PL +AA +G  
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSY 203

Query: 122 QV---LVDLFRARPFAAY--ATTIWSETVLHLCVKHNQLEALKFLVS 163
           +    L+D F      A    T         +  +    + ++ L  
Sbjct: 204 ETAKVLLDHF------ANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 9e-08
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 96  VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP---FAAY----------ATTIWS 142
           ++ +    R  DG  PL +A+  G      +           +            T    
Sbjct: 1   MDVN---VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTG 57

Query: 143 ETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           ET LHL  ++++ +A K L+      D  N +D+ G + LH AV+     V
Sbjct: 58  ETALHLAARYSRSDAAKRLLE--ASAD-ANIQDNMGRTPLHAAVSADAQGV 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.9 bits (201), Expect = 6e-20
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 33/165 (20%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ----VN 97
             L  AA RG +   + +L R  V    L+    + L +    G   I  ELL+     N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 98  PDMCLARDVDGRNPLHMAAMKGRIQVL---------VDLFRARPFAAYATTIWSETVLHL 148
                 +D  G +P+H AA  G +  L         V+                   +HL
Sbjct: 63  -----VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN----------VPDGTGALPIHL 107

Query: 149 CVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            V+      + FL +  +    L+ +D  G++ L LA+     ++
Sbjct: 108 AVQEGHTAVVSFLAAESD----LHRRDARGLTPLELALQRGAQDL 148

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.9 bits (188), Expect = 5e-18
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 29/167 (17%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L  A+  G++  + +LL ++ +  D    NR  +T L V    G    A E+L++     
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQ----- 57

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLARDVDGRNPLHMAAMKG 119
           G      D+  +SP+H AA+ G+++ +K L++    VN       D  G  P+H+A  +G
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-----VPDGTGALPIHLAVQEG 112

Query: 120 RIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
              V   L     +     +       T L L ++    + +  L  
Sbjct: 113 HTAVVSFLAA--ESDL---HRRDARGLTPLELALQRGAQDLVDILQG 154

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 79.8 bits (198), Expect = 1e-19
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 25/141 (17%)

Query: 34  VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEI 89
             TN   ET LH+A+++G +   + +L+      G      D    +PLH A   G++++
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQN-----GSDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 90  VKELLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF---RARPFAAYATTIWS 142
           V+ LLQ    VN            +PLH AA  G + + V L     A   A     I+ 
Sbjct: 59  VELLLQHKALVN-----TTGYQNDSPLHDAAKNGHVDI-VKLLLSYGASRNAV---NIFG 109

Query: 143 ETVLHLCVKHNQLEALKFLVS 163
              +      +    L     
Sbjct: 110 LRPVDYTDDESMKSLLLLPEK 130

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 82.5 bits (204), Expect = 1e-19
 Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 40/201 (19%)

Query: 8   LYEASVEGNITTLLQLLE-----QDPLILDKVVTNRHHETPLHVAALR---GHLDFAKEI 59
           L+     G    L  LLE        L           +T L  A L    G       +
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 60  LRRTPVLAGEL----------DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGR 109
           L+                     +  S LH+A +K  ++ VK L++   D+   R     
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRF 124

Query: 110 NPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD 169
              H                           + E  L L     Q + + +L+   +   
Sbjct: 125 FQKHQGTCFY---------------------FGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 170 FLNAKDDYGMSILHLAVADKQ 190
            L A D  G ++LH  V    
Sbjct: 164 SLEATDSLGNTVLHALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 35/171 (20%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRR------------TPVLAGELDSRRSSPLHMAAQK 84
                + LH+A  +  L   K ++                   G        PL +AA  
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 85  GYVEIVKELLQVNPDMCL--ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS 142
              ++V  LL+         A D  G   LH   M                   A     
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM------------------IADNSPE 188

Query: 143 ETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            + L + +    L+    L   +         +  G++ L LA  + +IE+
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQL---EEISNHQGLTPLKLAAKEGKIEI 236

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.7 bits (163), Expect = 9e-14
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 8   LYEASVEGNITTLLQLLEQ----------DPLILDKVVTNRHHETPLHVAALRGHLDFAK 57
           L+ A  + ++  +  L+E                 +       E PL +AA     D   
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 58  EILRRTPVLA------------------GELDSRRSSPLHMAAQKGYVEIVKELLQVNPD 99
            +L      A                     +S  +S L +    G +++   L      
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL 213

Query: 100 MCLARDVDGRNPLHMAAMKGRIQV 123
                +  G  PL +AA +G+I++
Sbjct: 214 E-EISNHQGLTPLKLAAKEGKIEI 236

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           N    + L +    G L     +      L    + +  +PL +AA++G +EI + +LQ 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPT-VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ- 242

Query: 97  NPDMCLARDVDGRNPLH 113
                  R+  G    H
Sbjct: 243 -------REFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 30/124 (24%)

Query: 77  PLHMAAQKGYVEIVKELLQ-------VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
            L     +G  E +  LL+          D        G+  L  A +  +  V      
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN----- 59

Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK 189
                          ++ L          K LV+          +   G S LH+A+  +
Sbjct: 60  -------------ACIMPLLQIDKDSGNPKPLVNA-----QCTDEFYQGHSALHIAIEKR 101

Query: 190 QIEV 193
            ++ 
Sbjct: 102 SLQC 105

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR 62
           L     +G +    +L     L     ++N    TPL +AA  G ++  + IL+R
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEE---ISNHQGLTPLKLAAKEGKIEIFRHILQR 243

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 80.6 bits (200), Expect = 2e-19
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 36/206 (17%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
            +LL  A+          L +           +    TPL++A     ++ A + L    
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTY---QVDEVDTEGNTPLNIAVHNNDIEIA-KAL---- 58

Query: 65  VLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ-----VNPDMCLARDVDGRNPLHMA 115
           +  G      +S   SP   A  +G  EI+  +L+     +N       +  G N L  A
Sbjct: 59  IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN-----KHNRYGGNALIPA 113

Query: 116 AMKGRIQV---LVDLFRARPFAAYATTIWSETVLHL-----CVKHNQLEALKFLVSIMND 167
           A KG I     L++  R           +  T L              + +K L+    D
Sbjct: 114 AEKGHIDNVKLLLEDGREDI---DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170

Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
               + KD+ G + +  A      E+
Sbjct: 171 ---QSIKDNSGRTAMDYANQKGYTEI 193

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.0 bits (196), Expect = 8e-19
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 24/162 (14%)

Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIV 90
           +        L  A  R      + +             E+D+  ++PL++A     +EI 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 91  KELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAY---ATTIWSET 144
           K L+    D+   ++    +P   A  +GR ++   ++        A         +   
Sbjct: 56  KALIDRGADIN-LQNSISDSPYLYAGAQGRTEILAYMLK------HATPDLNKHNRYGGN 108

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
            L    +   ++ +K L+   + R+ ++ ++D+G + L  AV
Sbjct: 109 ALIPAAEKGHIDNVKLLLE--DGREDIDFQNDFGYTALIEAV 148

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 42/125 (33%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF 128
                + L  A Q+   ++ + L       D     D +G  PL++A     I       
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDI------- 52

Query: 129 RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD 188
                         E               K L+    D   +N ++    S    A A 
Sbjct: 53  --------------EIA-------------KALIDRGAD---INLQNSISDSPYLYAGAQ 82

Query: 189 KQIEV 193
            + E+
Sbjct: 83  GRTEI 87

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 8e-06
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAAL-----RGHLDFAKEILRR 62
           L  A+ +G+I  +  LLE      D    N    T L  A       + + D  K ++  
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGRE--DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM-- 165

Query: 63  TPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ 95
                G      D+   + +  A QKGY EI K L Q
Sbjct: 166 ---ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.0 bits (198), Expect = 6e-19
 Identities = 33/166 (19%), Positives = 53/166 (31%), Gaps = 29/166 (17%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ- 95
              L  AAL G L+  ++ ++           + +    + LH A       IV  L+  
Sbjct: 22  LVLLLDAALTGELEVVQQAVKE-----MNDPSQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 96  ---VNPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLC 149
              VN     + D  G  PLH AA      +   LV    A  FA   T     T    C
Sbjct: 77  GANVN-----SPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFA--TTLSDGATAFEKC 128

Query: 150 --VKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
              +    +   +L  +      +   +   +  L    A+   E+
Sbjct: 129 DPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAAL--RGHLDFAKEILRRTPV 65
           L+ A+   +    + L++    I     T     T          G+ D A   L     
Sbjct: 91  LHCAASCNDTVICMALVQHGAAIFAT--TLSDGATAFEKCDPYREGYADCA-TYLADVEQ 147

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
             G ++S     L   + +   E +      +  + L RD         AA+ G+   
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTV-LRRDGPEETDWWWAALHGQEGY 203

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 7e-19
 Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 22/160 (13%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ-- 95
              ++A      +  + IL              D    + LH A   G+ EIV+ LLQ  
Sbjct: 9   MICNLAYSGKLDELKERILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 96  --VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN 153
             VN      +D  G +PLH+AA  G  ++ V     +     A      T LH     N
Sbjct: 64  VPVN-----DKDDAGWSPLHIAASAGXDEI-VKALLVKGAHVNAVNQNGCTPLHYAASKN 117

Query: 154 QLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           + E    L+    +    +AKD Y  + +H A A   +++
Sbjct: 118 RHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKM 154

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.4 bits (193), Expect = 3e-18
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 17/192 (8%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
            +   A          ++L    L       ++   T LH A   GH +   E L    +
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRT---DQDSRTALHWACSAGHTEIV-EFL----L 60

Query: 66  LAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI 121
             G    + D    SPLH+AA  G  EIVK LL     +  A + +G  PLH AA K R 
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRH 119

Query: 122 QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSI 181
           ++   +         A   +  T +H       L+ +  L+         N +D  G + 
Sbjct: 120 EI-AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTP 175

Query: 182 LHLAVADKQIEV 193
           LHLA  ++++E 
Sbjct: 176 LHLACDEERVEE 187

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
            + L+ A+ +      + LLE      +    + +  T +H AA +G+L     +L    
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGA---NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163

Query: 65  VLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
                 D+  ++PLH+A  +  VE  K L+     +    + + + PL +A 
Sbjct: 164 ST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 106 VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM 165
           V      ++A      ++  +   A    A  T   S T LH        E ++FL+   
Sbjct: 5   VSNIMICNLAYSGKLDEL-KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-- 61

Query: 166 NDRDFLNAKDDYGMSILHLAVADKQIEV 193
                +N KDD G S LH+A +    E+
Sbjct: 62  LGVP-VNDKDDAGWSPLHIAASAGXDEI 88

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
            + ++ A+ +GN+  +  LL          + +    TPLH+A     ++ AK ++ +  
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKA---STNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196

Query: 65  VLAGELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDM 100
            +    +    +PL +A   G + ++ + L       M
Sbjct: 197 SI-YIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.0 bits (198), Expect = 9e-19
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 11/153 (7%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ-VNPDM 100
               +    GH              A ++ S   +P   AA+K   + + +LL+  + D 
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKADEQALSQLLEDRDVD- 71

Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
             A D +GR  L   A  G  + +  L  A     +       T LH+   + + E ++ 
Sbjct: 72  --AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 161 LVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           LV      D +  +D+ G++ L LA    +   
Sbjct: 130 LVE--LGAD-IEVEDERGLTALELAREILKTTP 159

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 33/212 (15%), Positives = 56/212 (26%), Gaps = 42/212 (19%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
                 +G+  + +        +         +ETP   AA +         L     L 
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADV------VSEYETPWWTAARKADEQAL-SQL-----LE 66

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
                 +D    + L   A  G  + V+ L +   D+       G   LHMAA   R +V
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 124 ---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI---MNDRDF------- 170
              LV+L  A             T L L  +  +       +     +            
Sbjct: 127 VEALVEL-GADI---EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182

Query: 171 ---------LNAKDDYGMSILHLAVADKQIEV 193
                    +  K   G  + +L       + 
Sbjct: 183 VFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 32/145 (22%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L   +  G+   +  L E    +  +    R   T LH+AA     +   E L    V  
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHR--DMRGGLTALHMAAGYVRPEVV-EAL----VEL 133

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQ---------------------VNPDMCL 102
           G      D R  + L +A +          +Q                        D  +
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDL 127
            +   G++  ++   K         
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 21/137 (15%), Positives = 35/137 (25%), Gaps = 31/137 (22%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR----- 62
           L+ A+       +  L+E      D  V +    T L +A            ++      
Sbjct: 115 LHMAAGYVRPEVVEALVELGA---DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171

Query: 63  ----TPVLAG------------ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
                 VL G            E   +     ++   K   +              A DV
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV-----AEDV 226

Query: 107 --DGRNPLHMAAMKGRI 121
             D  + L  A  +  I
Sbjct: 227 AKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 12/89 (13%)

Query: 107 DGRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI 164
           +G     +    G     V      A   + Y      ET      +    +AL  L+  
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY------ETPWWTAARKADEQALSQLLE- 66

Query: 165 MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             DRD ++A D+ G + L         + 
Sbjct: 67  --DRD-VDAVDENGRTALLFVAGLGSDKC 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.4 bits (192), Expect = 1e-18
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 40/170 (23%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ- 95
              L  AA RG L+    +L+             +    + L +    G  EI + LL  
Sbjct: 6   GNELASAAARGDLEQLTSLLQN-----NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR 59

Query: 96  ---VNPDMCLARDVDGRNPLHMAAMKGRIQVL---------VDLFRARPFAAYATTIWSE 143
               +      +D  G   +H AA  G +  L         V+                 
Sbjct: 60  GANPD-----LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN----------IEDNEGN 104

Query: 144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             LHL  K   L  ++FLV   +    +  ++  G +   LA    + EV
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK--HTASNVGHRNHKGDTACDLARLYGRNEV 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 5e-14
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 19/96 (19%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKE 92
           +R     +H AA  G LD   + L    +         D+  + PLH+AA++G++ +V+ 
Sbjct: 67  DRTGFAVIHDAARAGFLDTL-QTL----LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 93  LLQ-----VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           L++     V       R+  G     +A + GR +V
Sbjct: 122 LVKHTASNVG-----HRNHKGDTACDLARLYGRNEV 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.9 bits (118), Expect = 6e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           +++A+  G + TL  LLE      D  + +     PLH+AA  GHL   + +++ T    
Sbjct: 74  IHDAARAGFLDTLQTLLEFQA---DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELL 94
           G  + +  +   +A   G  E+V  + 
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.3 bits (194), Expect = 7e-18
 Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 35/197 (17%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G +     L+ Q   +      N   +TPL +A      +  +          
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAV---NSEGDTPLDIAEEEAMEELLQ-------NEV 159

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
                   +      +    +  + L   + +  +     G   LH+AA KG  +V    
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEV---- 214

Query: 128 FRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYG 178
                                    T LH      + EA + LV  + D   + A +  G
Sbjct: 215 ------LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVNKVG 265

Query: 179 MSILHLAVAD--KQIEV 193
            +   +A  D    +E 
Sbjct: 266 QTAFDVADEDILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.3 bits (194), Expect = 8e-18
 Identities = 31/163 (19%), Positives = 50/163 (30%), Gaps = 39/163 (23%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ-- 95
                A   G  +    +L R     G      +    + LH A     V++VK L++  
Sbjct: 42  AVFLAACSSGDTEEVLRLLER-----GADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 96  --VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSET 144
             +N       D +G  PLH AA  G + +          A Y         A     +T
Sbjct: 97  ANIN-----QPDNEGWIPLHAAASCGYLDI----------AEYLISQGAHVGAVNSEGDT 141

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA 187
            L +  +    E L+  V+       + A       I+     
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVD--IEAARKEEERIMLRDAR 182

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 31/164 (18%)

Query: 42  TPLHVAALRGHLDFAKE-ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ--VNP 98
               +    G     +  +++R        D         A   G  E V  LL+   + 
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA---VFLAACSSGDTEEVLRLLERGADI 66

Query: 99  DMCLARDVDGRNPLHMAAMKGRIQVL---------VDLFRARPFAAYATTIWSETVLHLC 149
           +     +VDG   LH A +   + ++         ++                   LH  
Sbjct: 67  N---YANVDGLTALHQACIDDNVDMVKFLVENGANIN----------QPDNEGWIPLHAA 113

Query: 150 VKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                L+  ++L+S       + A +  G + L +A  +   E+
Sbjct: 114 ASCGYLDIAEYLIS--QGAH-VGAVNSEGDTPLDIAEEEAMEEL 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 32/136 (23%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELL----QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
           D+++     +    G    ++  +    +        +  DG      A   G  +    
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTK-----VKFDDG-AVFLAACSSGDTEE--- 55

Query: 127 LFRARPFAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDY 177
                                 +   T LH     + ++ +KFLV   N  + +N  D+ 
Sbjct: 56  -------VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE--NGAN-INQPDNE 105

Query: 178 GMSILHLAVADKQIEV 193
           G   LH A +   +++
Sbjct: 106 GWIPLHAAASCGYLDI 121

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 5/91 (5%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
             D   +    +    G    L      R             V          E +  L+
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKR--KKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                 D +N  +  G++ LH A  D  +++
Sbjct: 61  E--RGAD-INYANVDGLTALHQACIDDNVDM 88

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+ +G    L  L++      D  + +    TPLH AA  G  +    IL    V  
Sbjct: 203 LHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEAC-RIL----VEN 254

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD 105
                 ++    +   +A +     + +   + N      R+
Sbjct: 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.0 bits (188), Expect = 1e-17
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ-VNPDM 100
               +    GH              A ++ S   +P   AA+K   + + +LL+  + D 
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKADEQALSQLLEDRDVD- 70

Query: 101 CLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA 157
             A D +GR  L   A  G  +    L +   A             T LH+   + + E 
Sbjct: 71  --AVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDH--RDMRGGLTALHMAAGYVRPEV 125

Query: 158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           ++ LV      D +  +D+ G++ L LA    +   
Sbjct: 126 VEALVE--LGAD-IEVEDERGLTALELAREILKTTP 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 15/159 (9%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
                 +G+  + +        +         +ETP   AA +       ++L    V  
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADV------VSEYETPWWTAARKADEQALSQLLEDRDV-- 69

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV---L 124
             +D    + L   A  G  + V+ L +   D+       G   LHMAA   R +V   L
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 125 VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS 163
           V+L  A             T L L  +  +       + 
Sbjct: 130 VEL-GADIEVE---DERGLTALELAREILKTTPKGNPMQ 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 33/190 (17%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL---DSRRSS----PLHMA---AQKGY 86
             +    +  A  + +    + +L         L   + +        L  A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 87  VEIVKELLQVNPDM----------CLARDVDGRNPLHMAAMKGRIQV---LVD------- 126
            + +  LL V                     G+  LH+A  +  + +   LV+       
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 127 ---LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
                  +         + E  L L    NQL  +KFL+        ++A+D  G ++LH
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189

Query: 184 LAVADKQIEV 193
             V      V
Sbjct: 190 ALVEVADNTV 199

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 31/180 (17%), Positives = 49/180 (27%), Gaps = 40/180 (22%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRR-------------TPVLAGELDSRRSSPLHMAAQ 83
               +T LH+A  R ++     ++                             PL +AA 
Sbjct: 98  YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157

Query: 84  KGYVEIVKELLQVNPDMCL--ARDVDGRNPLHMAAMKGRIQVLVDLFRARPF------AA 135
              + IVK LLQ +       ARD  G   LH         V    F    +       A
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 136 Y---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
                      T     T L L     ++  L +++           ++ +     H A 
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------REIHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.8 bits (158), Expect = 5e-13
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 23/127 (18%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLD-----FAKEILRR 62
           L  A+    +  +  LL+      D    +    T LH              F   +   
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 63  TPVLAGELDSRRS----------SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPL 112
             +L  +L               +PL +AA  G + ++  +LQ        R++      
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REIHEPECR 263

Query: 113 HMAAMKG 119
           H AA   
Sbjct: 264 HAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY 86
            + +TNR   TPL +AA  G +     IL+R        +       H AA   +
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS-------ETVLHLCV---KH 152
              +  R  +  A  +   Q L  L      +    T          +T L   +    +
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 153 NQLEALKFLVSIMNDRDFL--------NAKDDYGMSILHLAVADKQIEV 193
            Q + +  L+ +    D L              G + LH+A+  + + +
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.1 bits (181), Expect = 2e-17
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 33/138 (23%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
            TPLH+AA  GHL+  K +L       G      D    +PLH+AA+ G++E+VK LL+ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA-----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 97  --NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSETV 145
             + +   A+D +GR PLH+AA  G ++V                      A      T 
Sbjct: 58  GADVN---AKDKNGRTPLHLAARNGHLEV----------VKLLLEAGADVNAKDKNGRTP 104

Query: 146 LHLCVKHNQLEALKFLVS 163
           LHL  ++  LE +K L+ 
Sbjct: 105 LHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.8 bits (167), Expect = 3e-15
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 21/124 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G++  +  LLE      D    +++  TPLH+AA  GHL+  K +L    + A
Sbjct: 6   LHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVK-LL----LEA 57

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELL----QVNPDMCLARDVDGRNPLHMAAMKG 119
           G      D    +PLH+AA+ G++E+VK LL     VN     A+D +GR PLH+AA  G
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNG 112

Query: 120 RIQV 123
            ++V
Sbjct: 113 HLEV 116

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G++  +  LLE      D    +++  TPLH+AA  GHL+  K +L       
Sbjct: 39  LHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA----- 90

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELL 94
           G      D    +PLH+AA+ G++E+VK LL
Sbjct: 91  GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.7 bits (102), Expect = 6e-06
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 22/96 (22%)

Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSETVLHLCVKHNQLEA 157
           +GR PLH+AA  G ++V                      A      T LHL  ++  LE 
Sbjct: 1   NGRTPLHLAARNGHLEV----------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 50

Query: 158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           +K L+    D   +NAKD  G + LHLA  +  +EV
Sbjct: 51  VKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV 83

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.8 bits (180), Expect = 3e-17
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
              A   G++  +   + +     D   T      PLH AA  G L+  + +L +     
Sbjct: 11  FMWALKNGDLDEVKDYVAKGE---DVNRTLEGGRKPLHYAADCGQLEILEFLLLK----- 62

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           G      D    +PL  A  +G+V  VK LL    D    +  DG         +    +
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKAL 121

Query: 124 L 124
           L
Sbjct: 122 L 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.0 bits (178), Expect = 8e-17
 Identities = 29/157 (18%), Positives = 44/157 (28%), Gaps = 47/157 (29%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           +     A   G LD  K+ + +     G            PLH AA  G +EI++ LL  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAK-----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE 156
             D+  A D     PL  A  +G                                   + 
Sbjct: 63  GADIN-APDKHHITPLLSAVYEGH----------------------------------VS 87

Query: 157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            +K L+S   D      K   G++            +
Sbjct: 88  CVKLLLSKGAD---KTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G +  L  LL +     D    ++HH TPL  A   GH+   K +L +     
Sbjct: 44  LHYAADCGQLEILEFLLLKGA---DINAPDKHHITPLLSAVYEGHVSCVKLLLSK----- 95

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVK 91
           G           +       +    +++
Sbjct: 96  GADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
                   A   G +   V  + A+      T       LH      QLE L+FL+    
Sbjct: 6   MCDKEFMWALKNGDLDE-VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
           D   +NA D + ++ L  AV +  +  
Sbjct: 65  D---INAPDKHHITPLLSAVYEGHVSC 88

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 47/203 (23%)

Query: 7   LLYEASVEGNITTLLQLLE----QDPLILDKVVTNRHH-ETPLHVAAL---RGHLDFAKE 58
           +L++    G+   L  LL         + D+        +T L  A L    G  D    
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 59  ILRRTPVLAG----------ELDSRRSSPLHMAAQKGYVEIVKELLQ----VNPDMCLAR 104
           +L                  ++  R  + LH+A ++     V+ L++    V+     A+
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-----AQ 122

Query: 105 DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI 164
                                               + E  L L    NQ   + +L   
Sbjct: 123 ARGRFFQPK--------------------DEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

Query: 165 MNDRDFLNAKDDYGMSILHLAVA 187
            + +  L  +D  G ++LH  VA
Sbjct: 163 GHKQADLRRQDSRGNTVLHALVA 185

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLA--GELDSRRSSPLHMAAQ---------KGYVEI 89
           E PL +AA          +       A     DSR ++ LH             K   ++
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 90  VKELL----QVNPDMCLA--RDVDGRNPLHMAAMKGRIQV 123
              LL    ++ PD  L    + DG +PL MAA  G+I +
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 20/121 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGH-----LDFAKEI--- 59
           L  A+       +  L E      D    +    T LH              F  ++   
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203

Query: 60  -------LRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPL 112
                  L     L   L++   SPL MAA+ G + I + +++         D    +  
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE-----IADAAAHHHH 258

Query: 113 H 113
           H
Sbjct: 259 H 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 33/149 (22%)

Query: 77  PLHMAAQKGYVEIVKELLQ--------VNPDMCLARDVDGRNPLHMAAM------KGRIQ 122
            L     +G  + ++ LL         +  D        G+  L  A +         I 
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLT-DEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 123 VLVDLFRARPFAAY-------ATTIWSETVLHLCVKHNQLEALKFLVS-----------I 164
           +L+D+                      +T LH+ ++      ++ LV             
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 165 MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                       +G   L LA    Q  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHI 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.7 bits (177), Expect = 2e-16
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 26/159 (16%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
              L  AA RG ++  + +L      AG      +S    P+ +    G   + + LL  
Sbjct: 13  ADWLATAAARGRVEEVRALLE-----AGANPNAPNSYGRRPIQVMMM-GSARVAELLLLH 66

Query: 97  --NPDMCLARDVDGR-NPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVK 151
              P+     D      P+H AA +G +  LV L R  AR         W    + L  +
Sbjct: 67  GAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR---DAWGRLPVDLAEE 120

Query: 152 HNQLEALKFLVSIMNDRDFLNAKDDYGMSIL--HLAVAD 188
               +  ++L +           +   +        + D
Sbjct: 121 LGHRDVARYLRAAAGG---TRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 68.3 bits (168), Expect = 4e-15
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 19/123 (15%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L  A+  G +  +  LLE      +    N +   P+ V    G    A+ +L       
Sbjct: 16  LATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMM-MGSARVAELLLLH----- 66

Query: 68  G-ELDSR----RSSPLHMAAQKGYVEIVKELLQV--NPDMCLARDVDGRNPLHMAAMKGR 120
           G E +       + P+H AA++G+++ +  L +     D    RD  GR P+ +A   G 
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGH 123

Query: 121 IQV 123
             V
Sbjct: 124 RDV 126

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 77  PLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQV---LVDLFRAR 131
            L  AA +G VE V+ LL+   NP+   A +  GR P+ +  M G  +V   L+    A 
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMM-GSARVAELLLL-HGAE 69

Query: 132 PFAAYATTIWSETV-LHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ 190
           P         + T  +H   +   L+ L  L         L+ +D +G   + LA     
Sbjct: 70  P---NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGH 123

Query: 191 IEV 193
            +V
Sbjct: 124 RDV 126

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           +++A+ EG + TL+ L           V +     P+ +A   GH D A+ +        
Sbjct: 82  VHDAAREGFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA---G 135

Query: 68  GELDSRRSSPLHMAAQKGYVEIV 90
               +R S+   + A +G  +I 
Sbjct: 136 ---GTRGSNHARIDAAEGPSDIP 155

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 2e-16
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 10/86 (11%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
           TPLH+AA  GHL+  K +L       G      D    +PLH+AA+ G++E+VK LL+  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 98  PDMCLARDVDGRNPLHMAAMKGRIQV 123
            D+  A+D +GR PLH+AA  G ++V
Sbjct: 59  ADVN-AKDKNGRTPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.1 bits (134), Expect = 9e-11
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 42/119 (35%)

Query: 77  PLHMAAQKGYVEIVKELLQV--NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA 134
           PLH+AA+ G++E+VK LL+   + +   A+D +GR PLH+AA  G               
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGH-------------- 47

Query: 135 AYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                               LE +K L+    D   +NAKD  G + LHLA  +  +EV
Sbjct: 48  --------------------LEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.2 bits (124), Expect = 3e-09
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 8  LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
          L+ A+  G++  +  LLE      D    +++  TPLH+AA  GHL+  K +L       
Sbjct: 6  LHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA----- 57

Query: 68 G----ELDSRRSSPLHMAAQKGYVEIVKELL 94
          G      D    +PLH+AA+ G++E+VK LL
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 17/192 (8%)

Query: 5   ESLLYEASVEGNITTL---LQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEIL- 60
           E + + A++ G  + L     LL  D       V    +     +AA  GHL     +  
Sbjct: 93  EVICFVAAITGCSSALDTLCLLLTSDE---IVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 61  RRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA-RDVDGRNPLHMAAM-K 118
                +   + +       +AA+ G++ ++  L ++ P    A    +       AA+ +
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209

Query: 119 GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYG 178
           G   V+  L       AYA  I         V         F+   +N    ++      
Sbjct: 210 GHHNVINFLLDCPVMLAYA-EIHEFEYGEKYVN-------PFIARHVNRLKEMHDAFKLS 261

Query: 179 MSILHLAVADKQ 190
                  +  K 
Sbjct: 262 NPDGVFDLVTKS 273

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.4 bits (172), Expect = 9e-15
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 39/214 (18%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
              A+  G++  L +L E  P      +    +     +AA  GHL     +    P  A
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190

Query: 68  GE-LDSRRSSPLHMAA-QKGYVEIVKELLQVNPD---------------------MCLAR 104
              + +        AA  +G+  ++  LL                            + R
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 250

Query: 105 DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ---LEALKFL 161
             +  +   ++   G   ++      + F           +L   ++ N    L+ ++FL
Sbjct: 251 LKEMHDAFKLSNPDGVFDLVTKSECLQGF----------YMLRNLIRRNDEVLLDDIRFL 300

Query: 162 VSIMNDRD--FLNAKDDYGMSILHLAVADKQIEV 193
           +SI   +              +L LA+       
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGA 334

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 39/169 (23%)

Query: 29  LILDKVVTNRHHETPLHVAALRGH---LDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG 85
           L  D        E    VAA+ G    LD    +L    ++   + +       +AA+ G
Sbjct: 81  LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENG 139

Query: 86  YVEIVKELLQVNPDMCLA-RDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSET 144
           ++ ++  L ++ P   +A    +  +   +AA  G                         
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG------------------------- 174

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                     L  L  L  +         + +   +    AV      V
Sbjct: 175 ---------HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 11/89 (12%)

Query: 42  TPLHVAALRGH---LDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELL 94
             L     R     LD  + +L    + A      +    +  L +A + G       LL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 95  QVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
            +         +   N  ++    GR+ +
Sbjct: 340 SIPSV----LALTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 7   LLYEASVEGNITTLLQLLEQDPL--ILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
            L   + E  +  +  LL    +  +             L +A   G+      +L    
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS--- 340

Query: 65  VLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
            +   L   +++  ++    G +++    L+
Sbjct: 341 -IPSVLALTKANNYYINETGGRLDLRAVALE 370

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.3 bits (171), Expect = 5e-16
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
            TPLH AA  GH +  K++L +     G          ++PLH+AA+ G+ EIVK LL  
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQV 123
             D+  AR  DG  P H+A   G  ++
Sbjct: 65  GADVN-ARSKDGNTPEHLAKKNGHHEI 90

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 59.7 bits (146), Expect = 3e-12
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G+   + +LL +     D    ++   TPLH+AA  GH +   ++L    +  
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHAEIV-KLL----LAK 64

Query: 68  G----ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLH 113
           G          ++P H+A + G+ EIVK L     D+  AR     +  H
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 56.2 bits (137), Expect = 5e-11
 Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 38/117 (32%)

Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
           PLH AA+ G+ E VK+LL    D+  AR  DG  PLH+AA  G                 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHA--------------- 55

Query: 137 ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                 E V             K L++   D   +NA+   G +  HLA  +   E+
Sbjct: 56  ------EIV-------------KLLLAKGAD---VNARSKDGNTPEHLAKKNGHHEI 90

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.9 bits (174), Expect = 8e-16
 Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 26/170 (15%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA----AQKGYVEIVKELLQ-- 95
             +  AA+ G  +   E+  +           +S+ L+        +   +I   L+   
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 96  --VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY-----ATTIWSETVLHL 148
             +      +R  +G          G   +       + F        A     + V+  
Sbjct: 66  ADIK-----SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 149 CVKHNQLEALKF-----LVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            + +  ++  +      L+   +    L  KD +G++ L      ++   
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIA 169

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 24/190 (12%), Positives = 52/190 (27%), Gaps = 35/190 (18%)

Query: 8   LYEASVEGNITTLLQLLEQ-DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL 66
           +  A++ G     L+L E+        + +N  +   L           +  ++ +    
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILY-DVLRNNNDEARYKISMFLINK---- 64

Query: 67  AG----ELDSRRSSPLHMAAQKGY------VEIVKELLQ----VNPDMCLARDVDGRNPL 112
            G          ++      Q G        E+ K  L+    +      A     +  +
Sbjct: 65  -GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-----ALYKPYKIVV 118

Query: 113 HMAAMKGRIQV-----LVDLFRARPFA-AYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
                   +       L  L  ++          W  T L    +  +  ALK +   + 
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

Query: 167 DRDFLNAKDD 176
                N K++
Sbjct: 179 K---YNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
           +  +     +  AAM G  +  ++LF        +   +     VL       + +   F
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 161 LVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           L++     D + ++   G ++          ++
Sbjct: 61  LIN--KGAD-IKSRTKEGTTLFFPLFQGGGNDI 90

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 68.2 bits (168), Expect = 3e-15
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 17/136 (12%)

Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIV 90
           +     +  L  AA RG ++  +++L      AG     L+     P+ +    G  ++ 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLE-----AGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 91  KELLQVNPDMCLARDVDGR-NPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLH 147
           + LL    +     D      P+H AA +G +  LV L R  AR         W    + 
Sbjct: 61  ELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVCDAWGRLPVD 116

Query: 148 LCVKHNQLEALKFLVS 163
           L  +    +  ++L +
Sbjct: 117 LAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
            P+H AA  G LD    + R     AG      D+    P+ +A ++G+ +I + L    
Sbjct: 80  RPVHDAAREGFLDTLVVLHR-----AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

Query: 98  PD 99
            D
Sbjct: 135 GD 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.0 bits (165), Expect = 7e-15
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQ-- 95
             L  AA  G  D    IL    +  G      D    +PL++A   G++EIV+ LL+  
Sbjct: 16  KKLLEAARAGQDDEV-RIL----MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70

Query: 96  --VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY---------ATTIWSET 144
             VN     A D  G  PLH+AA  G +++          A           A   + +T
Sbjct: 71  ADVN-----AVDAIGFTPLHLAAFIGHLEI----------AEVLLKHGADVNAQDKFGKT 115

Query: 145 VLHLCVKHNQLEALKFLVSI 164
              + + +   +  + L  +
Sbjct: 116 AFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.0 bits (165), Expect = 8e-15
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 31/130 (23%)

Query: 77  PLHMAAQKGYVEIVKELL----QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP 132
            L  AA+ G  + V+ L+     VN     A+D  G  PL++A   G +++         
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEI--------- 62

Query: 133 FAAY---------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
                        A      T LHL      LE  + L+   +  D +NA+D +G +   
Sbjct: 63  -VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK--HGAD-VNAQDKFGKTAFD 118

Query: 184 LAVADKQIEV 193
           +++ +   ++
Sbjct: 119 ISIGNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.8 bits (154), Expect = 3e-13
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 18/95 (18%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKE 92
           + +  TPL++A   GHL+   E+L    +  G     +D+   +PLH+AA  G++EI + 
Sbjct: 44  DEYGLTPLYLATAHGHLEIV-EVL----LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 93  LLQ----VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           LL+    VN     A+D  G+    ++   G   +
Sbjct: 99  LLKHGADVN-----AQDKFGKTAFDISIGNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.2 bits (111), Expect = 4e-07
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKELLQV 96
            TPLH+AA  GHL+ A E+L    +  G      D    +   ++   G  ++ + L ++
Sbjct: 81  FTPLHLAAFIGHLEIA-EVL----LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

Query: 97  N 97
           N
Sbjct: 136 N 136

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.4 bits (164), Expect = 9e-14
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 25/209 (11%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
                   S +  +  +        L L+  V + H  TPLH      +L+  K +++  
Sbjct: 96  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKH- 153

Query: 64  PVLAG----ELDSRRSSPLHMAAQKG---YVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
               G      D+   S L  A +          + LL       +  D   R  LH   
Sbjct: 154 ----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209

Query: 117 MKGRI------------QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI 164
           +   +             ++  + + +     + T   E+  +      +   L+ L   
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 165 MNDRDFLNAKDDYGMSILHLAVADKQIEV 193
               + LNA+D  G + L++A     I +
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISI 298

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 6e-11
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 27/198 (13%)

Query: 8   LYEASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           L+  +   N+  +  L++   + L  D        E+ L  A    +   +         
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYGDN-----MGESCLVKAVKSVNNYDSGTFEALLDY 189

Query: 66  LAG---ELDSRRSSPLHMAAQ-----------KGYVEIVKELLQVNPDMCLARDVDGRNP 111
           L       DS   + LH               K Y++I+   +    +  +    + +  
Sbjct: 190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249

Query: 112 LHMAAMKGRIQVLVDLFRARPFAAY---ATTIWSETVLHLCVKHNQLEALKFLVSIMNDR 168
                   R   +++    +   A    A     +T L++  +   +  +  L+      
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD--YGA 307

Query: 169 DFLNAKDDYGMSILHLAV 186
           D     +  G+  +    
Sbjct: 308 D-PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 10/156 (6%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
               E  L         +    +   +     E  S      H++      E+       
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHN- 153
             ++ +  D  G  PLH       ++++  L +  +            E+ L   VK   
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL---YGDNMGESCLVKAVKSVN 176

Query: 154 --QLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA 187
                  + L+  +     L  +D    +ILH  + 
Sbjct: 177 NYDSGTFEALLDYLYPC--LILEDSMNRTILHHIII 210

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 2e-13
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAG----ELDSRRSSPLHMAAQKGYVEIVKE 92
                  L  AA  G  D  + ++       G      D   S+PLH+AA+ G++E+VK 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMAN-----GADVAAKDKNGSTPLHLAARNGHLEVVKL 75

Query: 93  LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
           LL+   D+  A+D  G+    ++   G   + 
Sbjct: 76  LLEAGADV-XAQDKFGKTAFDISIDNGNEDLA 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 15/82 (18%)

Query: 47  AALRGHLDFAKEILRRTPVLAG-ELDSRRSSPLHMAAQKGYVEIVKELL----QVNPDMC 101
            +   H   +  ++ R     G  + S     L  AA+ G  + V+ L+     V     
Sbjct: 1   GSSHHHHHHSSGLVPR-----GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA---- 51

Query: 102 LARDVDGRNPLHMAAMKGRIQV 123
            A+D +G  PLH+AA  G ++V
Sbjct: 52  -AKDKNGSTPLHLAARNGHLEV 72

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 41/113 (36%)

Query: 81  AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
            +   +      L+     M      D    L  AA  G                     
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAG--------------------- 35

Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                        Q + ++ L++   D   + AKD  G + LHLA  +  +EV
Sbjct: 36  -------------QDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEV 72

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.2 bits (135), Expect = 6e-10
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 35  VTNRHHETPLHVAALRGHLDFAK--EILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKE 92
             +   ET LH+A            + L +      +   + S+ LH        E +K 
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 93  LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
           LL+    +    +  G  PL +A          +L  
Sbjct: 224 LLRGKASIE-IANESGETPLDIAKRLKHEH-CEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L   SV+     ++  L Q+   LDK        T LH   L  + +   ++L R     
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTALHYCCLTDNAECL-KLLLRGKASI 231

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQ 95
              +    +PL +A +  +    + L Q
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 71  DSRRSSPLHMAAQKGYVEIVK--ELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF 128
                + LH+A +      +   + L  N      +   G   LH   +    +  + L 
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC-LKLL 224

Query: 129 RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDR--DFLNAKDDYGM 179
                +        ET L +  +       + L   ++ R    ++ + ++ +
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRL 277

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 3/124 (2%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           +LL+ AS        +         ++ V   + + TPL  A     L    E L +   
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC-EFLLQNGA 259

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLV 125
              + DS    PLH A   G+  +    L+   D   ARD +GR+PL +A       + V
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADI-V 317

Query: 126 DLFR 129
            L R
Sbjct: 318 TLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 2   ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILR 61
           +   + L +A+   ++     LL+      +    +     PLH A + GH   A   L+
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGA---NVNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 62  RTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
           R   L G  DS    PL +A +    +IV  L  
Sbjct: 290 RGADL-GARDSEGRDPLTIAMETANADIVTLLRL 322

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 4   MESLLYEASVEGNITTLLQLL---EQDPLILDKVVTNRHHETPLHVAALRGHLD--FAKE 58
               L+ A    ++ ++L+     +     L         E  LH+A    +       +
Sbjct: 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD 210

Query: 59  ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK 118
            + +         +  ++ LH AA     + +K LL+    +    +  G   L +A  K
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKK 269

Query: 119 GRIQVLVDLFR 129
              +   +L  
Sbjct: 270 HHKE-CEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 64  PVLAGELDSRRSSPLHMAAQKGY---VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR 120
           P+   +  +     LH+A +      + +V  ++Q    +  A+  DG   LH AA+  +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQ 238

Query: 121 IQVLVDLFRARPFAAYATTIWSETVLHLCVK--HNQLEALKFLVSIMNDRD-FLNAKDDY 177
               + L               ET L +  K  H + E L    +        L+    +
Sbjct: 239 PD-CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL-LEQAQAGTFAFPLHVDYSW 296

Query: 178 GMS 180
            +S
Sbjct: 297 VIS 299

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 5   ESLLYEASVEGNITTLLQLLEQ---DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILR 61
              L+ A    ++ ++L+           L         E  LH+A    +         
Sbjct: 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN--------- 183

Query: 62  RTPVLAGEL-----------DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRN 110
           +  +   +             +  ++ LH AA     + +K LL+    +    +  G  
Sbjct: 184 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGET 242

Query: 111 PLHMAAMKGRIQVLVDLFRARP 132
            L +A  K   +    L +A+ 
Sbjct: 243 ALDIARKKHHKECEELLEQAQA 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	89.96
3gvo_A	351	Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom	83.87
3k49_A	369	MRNA-binding protein PUF3; PUF3, pumilio, RNA bind	83.06

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5e-41  Score=234.40  Aligned_cols=183  Identities=20%  Similarity=0.215  Sum_probs=171.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.++++.|++.+.   +++..+..|.||||+|+..|+.+++++|++++....+.++..|.||||+|+
T Consensus        56 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           56 TGETALHLAARYSRSDAAKRLLEASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH
Confidence            57899999999999999999999997   445678899999999999999999999999988555788999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|+
T Consensus       133 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          133 RLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             HHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999999998 7889999999999999999999999998 67789999999999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++|++   ++.+|..|.||+|+|+.+|+.||
T Consensus       211 ~~ga~---~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          211 DHFAN---RDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HTTCC---TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCC---ccccccCCCCHHHHHHHcCCHHH
Confidence            99999   88999999999999999999874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.9e-41  Score=236.75  Aligned_cols=187  Identities=21%  Similarity=0.153  Sum_probs=162.2

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      +.+.||||+|+..|+.+++++|++.++....++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A   85 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLA   85 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            36789999999999999999999988765446678889999999999999999999999998876 67788999999999


Q ss_pred             HHcCCHHHHHHHHhhCCCc----------------------------------------------cccccCCCCcHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDM----------------------------------------------CLARDVDGRNPLHMA  115 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~----------------------------------------------~~~~~~~~~~~l~~a  115 (193)
                      +..++.+++++|++++...                                              .+..+..|.||||+|
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  165 (282)
T 1oy3_D           86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (282)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence            9999999999999877541                                              245677899999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccc-cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTI-WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +..|+.+++++|++ .+.+++..+. .|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.+|
T Consensus       166 ~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          166 VIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHH
Confidence            99999999999998 4567777664 499999999999999999999999988   88999999999999999988753

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.1e-40  Score=226.24  Aligned_cols=183  Identities=20%  Similarity=0.215  Sum_probs=171.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.|||++|+..|+.+++++|++.+.   +++..+..|.||||+|+..|+.+++++|++++....+.++..|.||||+|+
T Consensus        24 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           24 TGETALHLAARYSRSDAAKRLLEASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            57899999999999999999999987   445678899999999999999999999999988556788999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+
T Consensus       101 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  178 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL  178 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998 7889999999999999999999999998 57799999999999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++|++   ++.+|..|.||+++|+..++.+|
T Consensus       179 ~~ga~---~~~~~~~g~t~l~~A~~~~~~~i  206 (223)
T 2f8y_A          179 DHFAN---RDITDHMDRLPRDIAQERMHHDI  206 (223)
T ss_dssp             HTTCC---TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCC---CccccccCCCHHHHHHHhcchHH
Confidence            99998   88999999999999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=7.2e-40  Score=225.68  Aligned_cols=186  Identities=25%  Similarity=0.282  Sum_probs=165.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhc-CcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccc----cccccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQ-DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA----GELDSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~----~~~~~~~~~~   77 (193)
                      .++||||.|+..|+.+.++.|++. +.   +++..|..|.||||+|+..|+.+++++|++++....    +..+..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence            378999999999999999999998 64   455678999999999999999999999999987653    3456789999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccC-------------CCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCcc
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDV-------------DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSET  144 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t  144 (193)
                      ||+|+..|+.+++++|+++|.++ +..+.             .|.||||+|+..|+.+++++|++ .+.+++..|..|+|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCC
Confidence            99999999999999999999887 44443             79999999999999999999998 57899999999999


Q ss_pred             HHhHHHHhCcHHHH----HHHHHhcCccc---cccccCCCCchHHHHHHhcCCccC
Q 029474          145 VLHLCVKHNQLEAL----KFLVSIMNDRD---FLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       145 ~l~~a~~~~~~~~~----~~Ll~~g~~~~---~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      |||+|+..++.+++    ++|+++|++..   ..+.+|..|.||||+|+..|+.++
T Consensus       157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~  212 (232)
T 2rfa_A          157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM  212 (232)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999988    99999998731   115899999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.6e-39  Score=219.40  Aligned_cols=185  Identities=21%  Similarity=0.215  Sum_probs=169.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ...+||+.|+..|+.+.++.++..++.  +++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG   80 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            457899999999999999999998862  44567889999999999999999999999999887 678999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCc-----HHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ-----LEA  157 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~  157 (193)
                      ..|+.+++++|++.+....+..+..|.||||.|+..++.+++++|++.++.+++..+..|+||||+|+..+.     .++
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            999999999999665533488899999999999999999999999997768999999999999999999988     999


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       158 ~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++|+++|++   ++.+|..|.||||+|+..|+.++
T Consensus       161 v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~  193 (201)
T 3hra_A          161 VKLLMENGAD---QSIKDNSGRTAMDYANQKGYTEI  193 (201)
T ss_dssp             HHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHhH
Confidence            9999999999   89999999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.7e-39  Score=222.17  Aligned_cols=182  Identities=22%  Similarity=0.272  Sum_probs=136.9

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcC--CccccccccCCCCHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~~l~~a   81 (193)
                      ++||||.|+..|+.+.++.|++.++....  ..+..|.||||+|+..|+.+++++|++++  .......+..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            46788888888888888888887764322  35777888888888888888888888877  444222567778888888


Q ss_pred             HHcCCHHHHHHHHhhC--CCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHH
Q 029474           82 AQKGYVEIVKELLQVN--PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK  159 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (193)
                      +..|+.+++++|++++  .+. +..+..|.||||.|+..++.+++++|++ .+.+++..+..|+||||+|+..|+.++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            8888888888888877  555 6667778888888888888888888887 46677777777888888888888888888


Q ss_pred             HHHHhc-CccccccccCCCCchHHHHHHhcCCcc
Q 029474          160 FLVSIM-NDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       160 ~Ll~~g-~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +|+++| ++   ++.+|..|.||||+|+..|+.+
T Consensus       158 ~Ll~~g~~~---~~~~d~~g~t~L~~A~~~~~~~  188 (228)
T 2dzn_A          158 LLCGLGKSA---VNWQDKQGWTPLFHALAEGHGD  188 (228)
T ss_dssp             HHHTTTCCC---SCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHhcCccc---ccCcCCCCCCHHHHHHHcCCHH
Confidence            888877 55   7777888888888888777654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.5e-40  Score=225.41  Aligned_cols=179  Identities=27%  Similarity=0.369  Sum_probs=97.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHc
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      +++|+.|+..|+++.++.+++.++..  .+..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+..
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGG--GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhh--hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence            45555555555555555555555432  2234555555555555555555555555555443 34455555555555555


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474           85 GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus        85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      |+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++
T Consensus        84 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  161 (231)
T 3aji_A           84 GXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY  161 (231)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            5555555555555554 4445555555555555555555555554 3444555555555555555555555555555555


Q ss_pred             cCccccccccCCCCchHHHHHHhcCCc
Q 029474          165 MNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       165 g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      |++   ++.+|..|.||||+|+..++.
T Consensus       162 g~~---~~~~~~~g~t~L~~A~~~~~~  185 (231)
T 3aji_A          162 KAS---TNIQDTEGNTPLHLACDEERV  185 (231)
T ss_dssp             TCC---SCCCCTTSCCHHHHHHHTTCH
T ss_pred             CCC---ccccCCCCCCHHHHHHHCCCH
Confidence            555   455555555555555555544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4e-39  Score=211.32  Aligned_cols=161  Identities=32%  Similarity=0.405  Sum_probs=148.9

Q ss_pred             CchhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHH
Q 029474            1 MERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus         1 ~~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      |.+..+.|+.||..|++++|+.|++.|+   +++.+|..|.||||+|+..++.+++++|++++..+ +.++..|.||||+
T Consensus         1 ~sdlg~~L~~Aa~~G~~~~v~~Ll~~Ga---dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~   76 (169)
T 4gpm_A            1 MSELGKRLIEAAENGNKDRVKDLIENGA---DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHH   76 (169)
T ss_dssp             -CHHHHHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHH
Confidence            4567789999999999999999999997   45678999999999999999999999999999887 7789999999999


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHH
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF  160 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (193)
                      |+..|+.+++++|+++|.++ +..+..|+||||+|+..|+.+++++|++ .+.+++.+|..|+|||++|+..|+.+++++
T Consensus        77 A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999998 8899999999999999999999999998 678999999999999999999999999999


Q ss_pred             HHHhcCc
Q 029474          161 LVSIMND  167 (193)
Q Consensus       161 Ll~~g~~  167 (193)
                      |+++|++
T Consensus       155 Ll~~GA~  161 (169)
T 4gpm_A          155 LEKQGGW  161 (169)
T ss_dssp             HHTC---
T ss_pred             HHHCCCC
Confidence            9999998

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-40  Score=230.39  Aligned_cols=182  Identities=25%  Similarity=0.337  Sum_probs=163.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcch---------------------------------------hhhhccCCCCCcH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLI---------------------------------------LDKVVTNRHHETP   43 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~---------------------------------------~~~~~~~~~g~~~   43 (193)
                      +..++|+.|+..|++++|+.|++.++..                                       .+++..|.+|.||
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp   89 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP   89 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCH
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            4568999999999999999999765421                                       1234567889999


Q ss_pred             HHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHH
Q 029474           44 LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV  123 (193)
Q Consensus        44 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  123 (193)
                      ||+|+..|+.++|++|++.+... +..+..|.||+++|+..++.+++++|++.|.++ +..+..|.||||+|+..|+.++
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~  167 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHEL  167 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGG
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999887 677899999999999999999999999999998 8889999999999999999999


Q ss_pred             HHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC
Q 029474          124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       124 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~  190 (193)
                      +++|++ .+.+++..+..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+++++
T Consensus       168 v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          168 VALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHhCCc
Confidence            999998 6779999999999999999999999999999999998   89999999999999988775

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.8e-39  Score=221.78  Aligned_cols=182  Identities=23%  Similarity=0.250  Sum_probs=128.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.|||+.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+
T Consensus        10 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A           10 NKRSPLHAAAEAGHVDICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAA   85 (237)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC---cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHH
Confidence            456788888888888888888877753   3445667777777777777777777777776655 555667777777777


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..|+.+++++|++.+....+..+..|.||||.|+..++.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            77777777777777633225666667777777777777777777776 45566666677777777777777777777777


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      ++|++   ++.+|..|.||||+|+..++.+
T Consensus       165 ~~g~~---~~~~~~~g~t~L~~A~~~~~~~  191 (237)
T 3b7b_A          165 AAKCD---LHAVNIHGDSPLHIAARENRYD  191 (237)
T ss_dssp             TTTCC---TTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HcCCC---CCCcCCCCCCHHHHHHHhCCHh
Confidence            77666   6666777777777777766654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-39  Score=227.52  Aligned_cols=185  Identities=24%  Similarity=0.225  Sum_probs=143.6

Q ss_pred             chhhHHHHHHHHhC-------------CHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccc
Q 029474            2 ERMESLLYEASVEG-------------NITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG   68 (193)
Q Consensus         2 ~~~~~~L~~A~~~g-------------~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~   68 (193)
                      +++.||||+|+..|             +.++++.|++.++....  ..|..|.||||+|+..|+.+++++|++++..+ +
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~   84 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEASADA-N   84 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-C
Confidence            36899999999987             99999999999985432  35788999999999999999999999999886 6


Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhH
Q 029474           69 ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHL  148 (193)
Q Consensus        69 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  148 (193)
                      .++..|.||||+|+..++.+++++|++.+....+..+..|.||||+|+..++.+++++|++ .+.+++..+..|+||||+
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~  163 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHW  163 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHH
Confidence            7799999999999999999999999999884448889999999999999999999999998 677899999999999999


Q ss_pred             HHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          149 CVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       149 a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      |+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.++
T Consensus       164 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~~~~  205 (253)
T 1yyh_A          164 AAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYET  205 (253)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCCHHH
Confidence            9999999999999999999   89999999999999999998763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-38  Score=219.28  Aligned_cols=181  Identities=23%  Similarity=0.246  Sum_probs=168.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.|||++|+..|+.+++++|++.+.   +++..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+
T Consensus        39 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~  114 (231)
T 3aji_A           39 DSRTALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAA  114 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCC---CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            57899999999999999999999986   44567889999999999999999999999999886 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|++++.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+
T Consensus       115 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999999988 7888999999999999999999999998 67789999999999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      ++|++   ++.+|..|.||+|+|+..++.+
T Consensus       193 ~~ga~---~~~~~~~g~t~l~~A~~~~~~~  219 (231)
T 3aji_A          193 TQGAS---IYIENKEEKTPLQVAKGGLGLI  219 (231)
T ss_dssp             HTTCC---SCCCCTTSCCHHHHSCHHHHHH
T ss_pred             HCCCC---CCCCCCCCCCHHHHHHhhHHHH
Confidence            99998   8899999999999998876544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-38  Score=220.34  Aligned_cols=181  Identities=23%  Similarity=0.264  Sum_probs=136.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHh----cCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLE----QDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      ++.||||+|+..|+++++++|++    .+.   +++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.|||
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l   83 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR---ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA   83 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCC---CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence            56788888888888888888876    333   34456777888888888888888888888877665 55677788888


Q ss_pred             HHHHHcCCHHHHHHHHhhCC----CccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccc-ccCccHHhHHHHhC
Q 029474           79 HMAAQKGYVEIVKELLQVNP----DMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATT-IWSETVLHLCVKHN  153 (193)
Q Consensus        79 ~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~~  153 (193)
                      |+|+..++.+++++|++.+.    +. +..+..|.||||.|+..++.+++++|++ .+.+++..+ ..|.||||+|+..+
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcC
Confidence            88888888888888888775    44 5566777788888888888888887777 455666665 66778888888888


Q ss_pred             cHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          154 QLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       154 ~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +.+++++|+++|++   ++.+|..|.||||+|+..|+.+
T Consensus       162 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~  197 (241)
T 1k1a_A          162 SLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLP  197 (241)
T ss_dssp             CHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHH
Confidence            88888888877777   7777777888888887777654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5e-39  Score=222.09  Aligned_cols=181  Identities=23%  Similarity=0.304  Sum_probs=168.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.|||+.|+..|+.+++++|++.+..   ++..+..|.||||+|+..|+.+++++|+++++...+.++..|.||||+|+
T Consensus        43 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  119 (237)
T 3b7b_A           43 DQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT  119 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH
Confidence            568999999999999999999999874   44568889999999999999999999999986555778999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+
T Consensus       120 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  197 (237)
T 3b7b_A          120 EYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFL  197 (237)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH
Confidence            999999999999999998 7889999999999999999999999998 66789999999999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      ++|++   ++.+|..|.||||+|+.+++.
T Consensus       198 ~~gad---~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          198 SRDSD---VTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             TTTCC---TTCCCTTSCCHHHHSCTTCHH
T ss_pred             HcCCC---CCccCCCCCCHHHHHHHHHHH
Confidence            99999   899999999999999998865

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.6e-39  Score=221.58  Aligned_cols=182  Identities=20%  Similarity=0.183  Sum_probs=166.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHhcC--CccccccccCCCCHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVV-TNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLH   79 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~~~g~~~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~~l~   79 (193)
                      .+.||||+|+..|+.+++++|++.++.. +... .+..|.||||+|+..|+.+++++|++++  ... +.++..|.||||
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~  112 (228)
T 2dzn_A           35 DGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLH  112 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTCTTC-CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHH
Confidence            5689999999999999999999999544 3333 7889999999999999999999999997  554 677899999999


Q ss_pred             HHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHH
Q 029474           80 MAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK  159 (193)
Q Consensus        80 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (193)
                      +|+..++.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++.+..+++..|..|+||||+|+..++.++++
T Consensus       113 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          113 LAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999998 8889999999999999999999999999665899999999999999999999999999


Q ss_pred             HHH-HhcCccccccccCCCCchHHHHHHhcCC
Q 029474          160 FLV-SIMNDRDFLNAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       160 ~Ll-~~g~~~~~~~~~d~~g~tpl~~A~~~~~  190 (193)
                      +|+ ++|++   ++.+|..|.||+|+|+..+.
T Consensus       192 ~Ll~~~ga~---~~~~~~~g~t~l~~A~~~~~  220 (228)
T 2dzn_A          192 LLVEKYGAE---YDLVDNKGAKAEDVALNEQV  220 (228)
T ss_dssp             HHHHHHCCC---SCCBCTTSCBGGGGCSSTTH
T ss_pred             HHHHhcCCC---CCccCCCCCcHHHHHHHHHH
Confidence            999 89998   89999999999999977653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.1e-39  Score=233.91  Aligned_cols=183  Identities=21%  Similarity=0.199  Sum_probs=155.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccc--------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG--------------   68 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~--------------   68 (193)
                      ++.||||+|+..|+++++++|++.+.   +++..|..|.||||+|+..|+.++|++|++++.....              
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIETGV---SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcC
Confidence            56888999999999999999998886   4455678888888888888888888888887653311              


Q ss_pred             --------------------c-----------------cccCCCCHHHHHHHcC--CHHHHHHHHhhCCCccccccCCCC
Q 029474           69 --------------------E-----------------LDSRRSSPLHMAAQKG--YVEIVKELLQVNPDMCLARDVDGR  109 (193)
Q Consensus        69 --------------------~-----------------~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~  109 (193)
                                          .                 ++..|.||||+|+..|  +.+++++|+++|.++ +..+..|.
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~  174 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADE  174 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSC
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCC
Confidence                                1                 5667899999999999  899999999999888 78888999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCc-----cccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHH
Q 029474          110 NPLHMAAMKGRIQVLVDLFRARPFA-----AYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL  184 (193)
Q Consensus       110 ~~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~  184 (193)
                      ||||+|+..|+.+++++|++.+ .+     ++..+..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+
T Consensus       175 t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~  250 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYL  250 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHH
Confidence            9999999999999999999843 34     788888999999999999999999999999988   88999999999999


Q ss_pred             HHhcCCccC
Q 029474          185 AVADKQIEV  193 (193)
Q Consensus       185 A~~~~~~ei  193 (193)
                      |+..|+.++
T Consensus       251 A~~~g~~~~  259 (364)
T 3ljn_A          251 SVRAAMVLL  259 (364)
T ss_dssp             HHHTCCHHH
T ss_pred             HHHhChHHH
Confidence            999988763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-39  Score=223.84  Aligned_cols=183  Identities=20%  Similarity=0.181  Sum_probs=167.3

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc---cccccccCCCCHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV---LAGELDSRRSSPLH   79 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~~~l~   79 (193)
                      .+.|||++|+..|+.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++.+..   ..+..+..|.||||
T Consensus        45 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  121 (241)
T 1k1a_A           45 LRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH  121 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH
Confidence            468999999999999999999999974   456788999999999999999999999999862   33667889999999


Q ss_pred             HHHHcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHH
Q 029474           80 MAAQKGYVEIVKELLQVNPDMCLARD-VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEAL  158 (193)
Q Consensus        80 ~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  158 (193)
                      +|+..++.+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|++ .+.+++..+..|+||||+|+..++.+++
T Consensus       122 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v  199 (241)
T 1k1a_A          122 VAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLV  199 (241)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999998 5555 789999999999999999999998 5779999999999999999999999999


Q ss_pred             HHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          159 KFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       159 ~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++|+++|++   ++.+|..|.||||+|+..|+.+|
T Consensus       200 ~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~i  231 (241)
T 1k1a_A          200 RTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDI  231 (241)
T ss_dssp             HHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             HHHHhcCCC---CCCcCCCCCCHHHHHHhcCcHHH
Confidence            999999999   89999999999999998877653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.3e-39  Score=224.47  Aligned_cols=186  Identities=25%  Similarity=0.256  Sum_probs=161.1

Q ss_pred             hhHHHHHHHHhCCHH----HHHHHHhcCcchhhhh-ccCCCCCcHHHHHHHc---CChHHHHHHHhcCCcccc-------
Q 029474            4 MESLLYEASVEGNIT----TLLQLLEQDPLILDKV-VTNRHHETPLHVAALR---GHLDFAKEILRRTPVLAG-------   68 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~----~~~~ll~~~~~~~~~~-~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~~-------   68 (193)
                      ++||||.|+..|+.+    .++++++.+.++.... ..|..|.||||+|+..   |+.+++++|++.+.....       
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            689999999999998    5566666776442211 1588999999999999   999999999998765421       


Q ss_pred             ---ccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCC-------------CCcHHHHHHHcCCHHHHHHHHHh--
Q 029474           69 ---ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD-------------GRNPLHMAAMKGRIQVLVDLFRA--  130 (193)
Q Consensus        69 ---~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~ll~~--  130 (193)
                         ..+..|.||||+|+..|+.+++++|+++|.++ +..+..             |.||||+|+..|+.+++++|++.  
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence               22467999999999999999999999999998 666654             99999999999999999999984  


Q ss_pred             CCCccccccccCccHHhHHHH--hCcHH-------HHHHHHHhcCccccc-------cccCCCCchHHHHHHhcCCccC
Q 029474          131 RPFAAYATTIWSETVLHLCVK--HNQLE-------ALKFLVSIMNDRDFL-------NAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       131 ~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~~~~-------~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+.+++.+|..|+||||+|+.  .++.+       ++++|+++|++   +       +.+|..|.||||+|+..|+.++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR---LCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC---cccccccccccCCCCCCHHHHHHHhCCHHH
Confidence            678999999999999999999  78888       99999999998   7       8999999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=223.75  Aligned_cols=180  Identities=26%  Similarity=0.276  Sum_probs=156.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.++++.|++.+.   +++..|..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+
T Consensus        58 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           58 SDWSPMHEAAIHGHQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC  133 (285)
T ss_dssp             CSCCHHHHHHHTTCHHHHHHHHHTTC---CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHH
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            46799999999999999999999886   44567888999999999999999999999998776 677889999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..|+.+++++|++.+.+. +. +..|.||||+|+..|+.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+
T Consensus       134 ~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  210 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLL  210 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999998877 33 3458999999999999999999998 56688888899999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++|++   ++ .+..|.||||+|+..++.++
T Consensus       211 ~~ga~---~~-~~~~g~t~L~~A~~~~~~~~  237 (285)
T 3d9h_A          211 ESGAD---VN-QGKGQDSPLHAVVRTASEEL  237 (285)
T ss_dssp             HTTCC---TT-CCBTTBCHHHHHHHTTCHHH
T ss_pred             HCCCC---CC-CCCCCCCHHHHHHHcCCHHH
Confidence            99888   66 48889999999999888653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.1e-38  Score=224.02  Aligned_cols=181  Identities=20%  Similarity=0.159  Sum_probs=150.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc-----------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV-----------------   65 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~-----------------   65 (193)
                      .+.||||+|+..|+.++++.|++.+++   ++..+..|.||||+|+..|+.+++++|++++..                 
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (282)
T 1oy3_D           44 LGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (282)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccC
Confidence            478999999999999999999999974   456788999999999999999999999987643                 


Q ss_pred             -----------------------------cccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHH
Q 029474           66 -----------------------------LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD-VDGRNPLHMA  115 (193)
Q Consensus        66 -----------------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a  115 (193)
                                                   ..+.++..|.||||+|+..|+.+++++|+++|.++ +..+ ..|.||||+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A  199 (282)
T 1oy3_D          121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLA  199 (282)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHH
T ss_pred             cchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHH
Confidence                                         13456788999999999999999999999999998 5555 4599999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      +..|+.+++++|++ .+.+++.++..|+||||+|+..++.+++++|+++|++   ++.+|..|.||+++|......
T Consensus       200 ~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          200 VEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP---EPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC---CCCCC----------------
T ss_pred             HHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC---cCcCCCcccccccccCCcccc
Confidence            99999999999998 5789999999999999999999999999999999999   899999999999999886543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-38  Score=226.13  Aligned_cols=175  Identities=26%  Similarity=0.333  Sum_probs=130.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.++|+.|+..|+++.++.|++.+.+   ++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            467999999999999999999999974   5567889999999999999999999999999876 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCC------------------------------------------------------
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDG------------------------------------------------------  108 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~------------------------------------------------------  108 (193)
                      ..|+.+++++|+++|.++ +..+..|                                                      
T Consensus       115 ~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence            999999999999999877 5555444                                                      


Q ss_pred             ------CcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHH
Q 029474          109 ------RNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSIL  182 (193)
Q Consensus       109 ------~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl  182 (193)
                            .||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.|||
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l  269 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAF  269 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTT
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC---CCCcCCCCCCHH
Confidence                  455555555555555555554 3445555555555555555555555555555555555   555555555555


Q ss_pred             HHHH
Q 029474          183 HLAV  186 (193)
Q Consensus       183 ~~A~  186 (193)
                      |+|+
T Consensus       270 ~~A~  273 (299)
T 1s70_B          270 DVAD  273 (299)
T ss_dssp             TSCC
T ss_pred             HHHH
Confidence            5553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-38  Score=231.86  Aligned_cols=185  Identities=18%  Similarity=0.198  Sum_probs=168.4

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCC--ccccccccCCCCHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP--VLAGELDSRRSSPLHM   80 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~~~l~~   80 (193)
                      .+.||||+|+..|+.+++++|++.+++   ++..+..|.||||+|+..|+.+++++|++++.  ...+..+..|.||||+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCC---CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            578999999999999999999999974   45678899999999999999999999999872  2236778999999999


Q ss_pred             HHHcC---CHHHHHHHHhhCCCccc-------cccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHH
Q 029474           81 AAQKG---YVEIVKELLQVNPDMCL-------ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCV  150 (193)
Q Consensus        81 a~~~~---~~~~~~~ll~~~~~~~~-------~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  150 (193)
                      |+..+   +.+++++|+++|.++..       ..+..|.||||+|+..|+.+++++|++.++.+++..|..|+||||+|+
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~  321 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  321 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence            99998   89999999999988722       256689999999999999999999999787899999999999999999


Q ss_pred             HhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          151 KHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       151 ~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..|+.+++++|+++|++   ++.+|..|.||||+|+.+|+.+|
T Consensus       322 ~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A~~~g~~~i  361 (373)
T 2fo1_E          322 QEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNI  361 (373)
T ss_dssp             HHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999   89999999999999999998764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.1e-38  Score=224.64  Aligned_cols=179  Identities=20%  Similarity=0.296  Sum_probs=161.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.++++.|++.++++   +..  +|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus        30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           30 HGHSASYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAV  103 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHH
Confidence            5789999999999999999999999754   333  5899999999999999999999999887 678999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCC-CcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDG-RNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      ..|+.+++++|+++|.++ +..+..| .||||+|+..|+.+++++|++.+. +... ...|.||||+|+..|+.+++++|
T Consensus       104 ~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFD-LAILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC-TTCC-CSTHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-cccc-ccCCccHHHHHHHcChHHHHHHH
Confidence            999999999999999998 7888888 899999999999999999998543 3321 12899999999999999999999


Q ss_pred             HHhcCccccccccCCCCchH-HHHHHhcCCccC
Q 029474          162 VSIMNDRDFLNAKDDYGMSI-LHLAVADKQIEV  193 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tp-l~~A~~~~~~ei  193 (193)
                      +++|++   ++.+|..|.|| ||+|+..++.++
T Consensus       181 l~~gad---~n~~~~~g~t~~L~~A~~~~~~~~  210 (285)
T 3kea_A          181 LDYMTS---TNTNNSLLFIPDIKLAIDNKDIEM  210 (285)
T ss_dssp             HHHHHH---TCTTCCCBCCTTHHHHHHHTCHHH
T ss_pred             HHcCCC---CCcccCCCCChHHHHHHHcCCHHH
Confidence            999998   89999999998 999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-37  Score=225.13  Aligned_cols=182  Identities=24%  Similarity=0.275  Sum_probs=147.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.+++++|++.+.   +++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQLLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAA  132 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            45788888888888888888888876   34556778888888888888888888888887776 566788888888888


Q ss_pred             HcCCHHHHHHHHhhCCCcccc------------------------------------------------------ccCCC
Q 029474           83 QKGYVEIVKELLQVNPDMCLA------------------------------------------------------RDVDG  108 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~------------------------------------------------------~~~~~  108 (193)
                      ..|+.+++++|+++|.++ +.                                                      .+..+
T Consensus       133 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  211 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH  211 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred             HcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence            888888888888887765 22                                                      23456


Q ss_pred             CcHHHHHHHc---CCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          109 RNPLHMAAMK---GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       109 ~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                      .||||+|+..   +..+++++|++ .+.+++..+..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|
T Consensus       212 ~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          212 ETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRA  287 (351)
T ss_dssp             CCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHH
Confidence            7788888877   44677788877 5667888888899999999999999999999999888   888999999999999


Q ss_pred             HhcCCccC
Q 029474          186 VADKQIEV  193 (193)
Q Consensus       186 ~~~~~~ei  193 (193)
                      +..|+.++
T Consensus       288 ~~~~~~~~  295 (351)
T 3utm_A          288 ALAGHLQT  295 (351)
T ss_dssp             HHHTCHHH
T ss_pred             HHcCcHHH
Confidence            99888653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-37  Score=217.52  Aligned_cols=180  Identities=23%  Similarity=0.211  Sum_probs=98.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      +.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+.
T Consensus        39 g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           39 GWTPLHNAVQMSREDIVELLLRHGAD---PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAV  114 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHH
Confidence            34555555555555555555555542   2334555555666666555555565555555444 3445555555555555


Q ss_pred             cCCHHHHHHHHhhCCCccccc----------cCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC
Q 029474           84 KGYVEIVKELLQVNPDMCLAR----------DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN  153 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  153 (193)
                      .|+.+++++|++.+.++ +..          +..|.||||.|+..|+.+++++|++..+.+++..+..|+||||+|+..+
T Consensus       115 ~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  193 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             hCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence            55555555555555544 222          4445566666666666666666655434455555555555555555555


Q ss_pred             c----HHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          154 Q----LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       154 ~----~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      +    .+++++|+++|++   ++.+|..|.||||+|+..|+.
T Consensus       194 ~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~  232 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCH
Confidence            5    5555555555554   455555555555555555544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.2e-40  Score=226.00  Aligned_cols=187  Identities=22%  Similarity=0.235  Sum_probs=158.5

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcch-hhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLI-LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~-~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      +++.||||+|+..|+.++++.|++.+... .+++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   84 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL   84 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence            35789999999999999999999887531 134567888999999999999999999999988776 6778899999999


Q ss_pred             HHHcCCHHHHHHHHhhCCCc-----cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccc-cCccHHhHHHHhCc
Q 029474           81 AAQKGYVEIVKELLQVNPDM-----CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI-WSETVLHLCVKHNQ  154 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~l~~a~~~~~  154 (193)
                      |+..|+.+++++|++.+.+.     ....+..|.||||+|+..|+.+++++|++ .+.+++..+. .|+||||+|+..|+
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~  163 (236)
T 1ikn_D           85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQN  163 (236)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999988642     35667789999999999999999999998 4567887776 89999999999999


Q ss_pred             HHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          155 LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       155 ~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+++++|+++|++   ++.+|..|.||||+|+.+++.++
T Consensus       164 ~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~  199 (236)
T 1ikn_D          164 PDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRI  199 (236)
T ss_dssp             HHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             HHHHHHHHHcCCC---CCcccCCCCCHHHHHHccCchHH
Confidence            9999999999988   88999999999999999888653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.9e-38  Score=222.02  Aligned_cols=187  Identities=21%  Similarity=0.235  Sum_probs=161.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhc----Ccchhhhh-ccCCCCCcHHHHHHHc---CChHHHHHHHhcCCccc-------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQ----DPLILDKV-VTNRHHETPLHVAALR---GHLDFAKEILRRTPVLA-------   67 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~----~~~~~~~~-~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~-------   67 (193)
                      .+.|||+.|+..|+++.++.|++.    +..+.+.. ..+..|.||||+|+..   |+.+++++|++.+....       
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            578999999999999999999975    33222222 2478899999999987   99999999999875421       


Q ss_pred             ---cccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccC--------------CCCcHHHHHHHcCCHHHHHHHHHh
Q 029474           68 ---GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV--------------DGRNPLHMAAMKGRIQVLVDLFRA  130 (193)
Q Consensus        68 ---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~ll~~  130 (193)
                         ...+..|.||||+|+..|+.+++++|+++|.++ +..+.              .|.||||+|+..|+.+++++|++.
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence               124668999999999999999999999999998 66665              799999999999999999999984


Q ss_pred             --CCCccccccccCccHHhHHHHhCc---------HHHHHHHHHhcCcccccc-------ccCCCCchHHHHHHhcCCcc
Q 029474          131 --RPFAAYATTIWSETVLHLCVKHNQ---------LEALKFLVSIMNDRDFLN-------AKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       131 --~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~~~~-------~~d~~g~tpl~~A~~~~~~e  192 (193)
                        .+.+++.+|..|+||||+|+..++         .+++++|+++|++   ++       .+|..|.||||+|+..|+.+
T Consensus       171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHH
Confidence              578999999999999999999988         8999999999988   64       58999999999999999876


Q ss_pred             C
Q 029474          193 V  193 (193)
Q Consensus       193 i  193 (193)
                      |
T Consensus       248 i  248 (273)
T 2pnn_A          248 V  248 (273)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-37  Score=229.84  Aligned_cols=182  Identities=29%  Similarity=0.399  Sum_probs=157.3

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      +.+.||||.|+..|+++++++|++.+.   +++..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~---~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   87 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGA---SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCA   87 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTC---CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHH
Confidence            357899999999999999999999986   44556788999999999999999999999998876 67788999999999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      +..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .+.+....+..|.||||+|+..|+.+++++|
T Consensus        88 ~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           88 ARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999888 7788889999999999999999999998 4556777788888999999999999999999


Q ss_pred             HHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +++|++   ++..+..|.||||+|+..++.+
T Consensus       166 l~~g~~---~~~~~~~g~t~L~~A~~~~~~~  193 (437)
T 1n11_A          166 LERDAH---PNAAGKNGLTPLHVAVHHNNLD  193 (437)
T ss_dssp             HHTTCC---TTCCCSSCCCHHHHHHHTTCHH
T ss_pred             HhCCCC---CCCCCCCCCCHHHHHHHcCCHH
Confidence            988887   7788888888888888888765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=6e-38  Score=219.55  Aligned_cols=187  Identities=20%  Similarity=0.203  Sum_probs=160.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHh----cCcchhhhh-ccCCCCCcHHHHHH---HcCChHHHHHHHhcCCcc--------
Q 029474            3 RMESLLYEASVEGNITTLLQLLE----QDPLILDKV-VTNRHHETPLHVAA---LRGHLDFAKEILRRTPVL--------   66 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~----~~~~~~~~~-~~~~~g~~~L~~A~---~~~~~~~v~~Ll~~~~~~--------   66 (193)
                      -++++|+.|+..|+.+.++.|++    .+..+...+ ..+..|.||||+|+   ..|+.+++++|++.+...        
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            35799999999999997666665    776554332 23477999999999   679999999999986432        


Q ss_pred             --ccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccccc--------------CCCCcHHHHHHHcCCHHHHHHHHHh
Q 029474           67 --AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD--------------VDGRNPLHMAAMKGRIQVLVDLFRA  130 (193)
Q Consensus        67 --~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~~  130 (193)
                        ....+..|.||||+|+..|+.+++++|+++|.++ +..+              ..|.||||+|+..|+.+++++|++.
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence              2334558999999999999999999999999998 6666              5799999999999999999999984


Q ss_pred             --CCCccccccccCccHHhHHHHhCc---------HHHHHHHHHhcCccccc-------cccCCCCchHHHHHHhcCCcc
Q 029474          131 --RPFAAYATTIWSETVLHLCVKHNQ---------LEALKFLVSIMNDRDFL-------NAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       131 --~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~~~-------~~~d~~g~tpl~~A~~~~~~e  192 (193)
                        .+.+++..|..|+||||+|+..++         .+++++|+++|++   +       +.+|..|.||||+|+..|+.+
T Consensus       163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK---LFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc---cccccchhhcccCCCCCHHHHHHHcCCHH
Confidence              578999999999999999998887         7999999999988   6       679999999999999999876


Q ss_pred             C
Q 029474          193 V  193 (193)
Q Consensus       193 i  193 (193)
                      |
T Consensus       240 ~  240 (260)
T 3jxi_A          240 I  240 (260)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-37  Score=228.39  Aligned_cols=181  Identities=22%  Similarity=0.232  Sum_probs=148.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.|||++|+..|+.++++.|++.+..   ++..+..|.||||+|+..|+.+++++|++++... +..+..|.||||+|+
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~  286 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVA  286 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHH
Confidence            346777777777777777777777753   3456777888888888888888888888887765 566788888888888


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++.++..|+||||+|+..|+.+++++|+
T Consensus       287 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll  364 (437)
T 1n11_A          287 QEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL  364 (437)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence            888888888888888887 7778888899999998888889988887 56788888888899999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      ++|++   ++.+|..|.||+++|++.|+.+
T Consensus       365 ~~ga~---~~~~~~~g~t~l~~A~~~g~~~  391 (437)
T 1n11_A          365 KNGAS---PNEVSSDGTTPLAIAKRLGYIS  391 (437)
T ss_dssp             HTTCC---SCCCCSSSCCHHHHHHHTTCHH
T ss_pred             HCcCC---CCCCCCCCCCHHHHHHHcCcHH
Confidence            98888   7888888999999998888754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.8e-37  Score=216.89  Aligned_cols=175  Identities=22%  Similarity=0.258  Sum_probs=160.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.+++++|++.+.   +++..+..|.||||+|+..|+.+++++|++++... +. +..|.||||+|+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~  165 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGA---QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAA  165 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC---CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHH
Confidence            57899999999999999999999987   44567899999999999999999999999998876 33 456999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++ .+.+++. +..|+||||+|+..++.+++++|+
T Consensus       166 ~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll  242 (285)
T 3d9h_A          166 RRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACLLM  242 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998 8889999999999999999999999998 4567664 889999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhc
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVAD  188 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~  188 (193)
                      ++|++   ++.+|..|.||||+|+.+
T Consensus       243 ~~gad---~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          243 DFGAD---TQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             HTTCC---TTCCCTTSCCGGGGSCTT
T ss_pred             HCCCC---CCCcCCCCCCHHHHhcCc
Confidence            99998   899999999999999854

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-36  Score=213.65  Aligned_cols=182  Identities=24%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccc----------cc
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL----------DS   72 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------~~   72 (193)
                      .+.|||++|+..|+.++++.|++.+.+   ++..+..|.||||+|+..|+.+++++|++++... +..          +.
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~  146 (285)
T 1wdy_A           71 NGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRK  146 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhcc
Confidence            567999999999999999999999874   4567889999999999999999999999998776 333          67


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCC----HHHHHHHHHhCCCccccccccCccHHh
Q 029474           73 RRSSPLHMAAQKGYVEIVKELLQV-NPDMCLARDVDGRNPLHMAAMKGR----IQVLVDLFRARPFAAYATTIWSETVLH  147 (193)
Q Consensus        73 ~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~g~t~l~  147 (193)
                      .|.||||+|+..|+.+++++|++. +.++ +..+..|.||||.|+..++    .+++++|++ .+.+++.++..|+||||
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~  224 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLI  224 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHH
Confidence            899999999999999999999998 8877 7889999999999999999    899999998 67789999999999999


Q ss_pred             HHHHhCcHHHHHHHHH-hcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          148 LCVKHNQLEALKFLVS-IMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       148 ~a~~~~~~~~~~~Ll~-~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +|+..++.+++++|++ .|++   ++.+|..|.||||+|+..|+.+|
T Consensus       225 ~A~~~~~~~~v~~Ll~~~g~~---~~~~~~~g~t~l~~A~~~~~~~i  268 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHcCcHHH
Confidence            9999999999999999 7888   89999999999999999998764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-36  Score=199.41  Aligned_cols=146  Identities=34%  Similarity=0.403  Sum_probs=139.2

Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCH
Q 029474           42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI  121 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  121 (193)
                      ++|+.|++.|+.++|+.|++++.++ +.++..|.||||+|+..++.+++++|++.|.++ +..+..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            5799999999999999999999887 788999999999999999999999999999998 88899999999999999999


Q ss_pred             HHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          122 QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       122 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+.+|+.+|
T Consensus        84 ~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A           84 EVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEV  151 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHH
Confidence            99999998 6789999999999999999999999999999999999   89999999999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=207.84  Aligned_cols=183  Identities=21%  Similarity=0.243  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      +.++|+.|+..|+++.+++|++.+.+   ++..+..|.||||+|+..|+.+++++|++++.......+..|.||||+|+.
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYD---VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence            34555555555555555555555532   233445555555555555555555555555554433333445555555555


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHh---------------------------------
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA---------------------------------  130 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~---------------------------------  130 (193)
                      .++.+++++|++.|.+. +..+..|.||||.|+..++.+++++|++.                                 
T Consensus        86 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  164 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT  164 (240)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence            55555555555555544 44444555555555555555555555442                                 


Q ss_pred             CCCccccccc-cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          131 RPFAAYATTI-WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       131 ~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+.+++..+. .|+||||+|+..++.+++++|+++|++   ++.+|..|.|||++|+..|+.++
T Consensus       165 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~  225 (240)
T 3eu9_A          165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVWM  225 (240)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHH
Confidence            3344444444 678888888888999999999999888   88889999999999999888653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=4.7e-36  Score=197.78  Aligned_cols=170  Identities=19%  Similarity=0.179  Sum_probs=150.8

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      ..+||+.|+..|+++.++.+++.++..  .+..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG--GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence            357999999999999999999998753  4567889999999999999999999999999876 6779999999999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .++.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|++
T Consensus        79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            99999999999999998 7889999999999999999999999998 677899999999999999999999999999999


Q ss_pred             hcCccccccccCCCCchH
Q 029474          164 IMNDRDFLNAKDDYGMSI  181 (193)
Q Consensus       164 ~g~~~~~~~~~d~~g~tp  181 (193)
                      +|++   +..++..|.||
T Consensus       157 ~~~~---~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILK---LFQSNLVPADP  171 (172)
T ss_dssp             HHHH---HSCC-------
T ss_pred             HHHH---HhcccCCCCCC
Confidence            9988   77888888877

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=3.2e-37  Score=217.59  Aligned_cols=183  Identities=17%  Similarity=0.190  Sum_probs=167.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH--
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA--   82 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~--   82 (193)
                      .++++.|+..|+++.++.+++.+... .++..|..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            56778899999999999999887543 467789999999999999999999999999998555888999999999999  


Q ss_pred             ---HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHH
Q 029474           83 ---QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK  159 (193)
Q Consensus        83 ---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (193)
                         ..++.+++++|++.|... ...+..|.||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               567899999999999877 7778899999999999999999999998 67899999999999999999999999999


Q ss_pred             HHHH-hcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          160 FLVS-IMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       160 ~Ll~-~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +|++ .|++   ++.+|..|.||||+|+..|+.+|
T Consensus       234 ~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~~i  265 (276)
T 4hbd_A          234 LLLAVPSCD---ISLTDRDGSTALMVALDAGQSEI  265 (276)
T ss_dssp             HHHTSTTCC---TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHhcCCCC---CcCcCCCCCCHHHHHHHcCCHHH
Confidence            9999 8888   89999999999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.1e-36  Score=206.67  Aligned_cols=151  Identities=17%  Similarity=0.197  Sum_probs=138.9

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      ..|..|.++|+.|+..|+.+++++|++.+... +.++..|.||||+|+..|+.+++++|++.+.+.....+..+.||||.
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            35777899999999999999999999999776 67789999999999999999999999999998866666779999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCC
Q 029474          115 AAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~  190 (193)
                      |+..++.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+++|++   ++..+..|.||||+|+..++
T Consensus        83 A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             HHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCC
Confidence            999999999999998 5778888999999999999999999999999999988   88999999999999997665

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=7e-36  Score=195.07  Aligned_cols=160  Identities=23%  Similarity=0.304  Sum_probs=146.0

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      +...+||+.|+..|+++.+++|++.+.   +++..+..|.||||+|+. |+.+++++|++++..+ +.++..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNV---NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA   77 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCC---CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCC---CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            567899999999999999999999886   445678899999999999 9999999999998876 67799999999999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      +..++.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++.+...++..+..|.||||+|+..++.+++++|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999988 788999999999999999999999999977655788999999999999999999999999


Q ss_pred             HHhcCc
Q 029474          162 VSIMND  167 (193)
Q Consensus       162 l~~g~~  167 (193)
                      +++|++
T Consensus       157 l~~GAd  162 (162)
T 1ihb_A          157 QANGAG  162 (162)
T ss_dssp             HHTC--
T ss_pred             HHhCCC
Confidence            999975

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.3e-35  Score=213.55  Aligned_cols=184  Identities=26%  Similarity=0.221  Sum_probs=140.9

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCC-CCCcHHHHHHHcCChHHHHHHHhcCCcc---------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNR-HHETPLHVAALRGHLDFAKEILRRTPVL---------------   66 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~-~g~~~L~~A~~~~~~~~v~~Ll~~~~~~---------------   66 (193)
                      +++|+|+.|+..|++++|+.|++.|+++   +.++. .|+||||+|+..|+.++|++|++++..+               
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadv---n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANV---NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            4689999999999999999999999744   44554 5899999999999999999999987643               


Q ss_pred             -----------------ccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccc---------cccCCCCcHHHHHHHcCC
Q 029474           67 -----------------AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL---------ARDVDGRNPLHMAAMKGR  120 (193)
Q Consensus        67 -----------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~---------~~~~~~~~~l~~a~~~~~  120 (193)
                                       .+..+..|.||+|+|+..|+.+++++++++|.++..         ..+..|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence                             234567788899999999998999888888876521         234467888888888888


Q ss_pred             HHHHHHHHHhCCCc-------------------------------------cccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474          121 IQVLVDLFRARPFA-------------------------------------AYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus       121 ~~~~~~ll~~~~~~-------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .+++++|++..+.+                                     ++.++..|+||||+|+..++.+++++|++
T Consensus       181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            88888887644433                                     34445567777777777777777777776


Q ss_pred             h-cCccccccccCCCCchHHHHHHhcCCcc
Q 029474          164 I-MNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       164 ~-g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      . |++   ++.+|..|.||||+|+..|+.+
T Consensus       261 ~~~~~---vn~~d~~G~TpL~~A~~~g~~~  287 (337)
T 4g8k_A          261 QEHIE---INDTDSDGKTALLLAVELKLKK  287 (337)
T ss_dssp             STTCC---TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             hcCCc---ccCcCCCCCCHHHHHHHcCCHH
Confidence            4 455   7777777777777777777765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.6e-35  Score=213.93  Aligned_cols=183  Identities=26%  Similarity=0.272  Sum_probs=163.3

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.++|+.|+..|+.+.++.++....  .+.+..|..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLN--VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTT--TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHH
Confidence            46899999999999999999998743  245567889999999999999999999999999876 777999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccc------------------------
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYAT------------------------  138 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------------------------  138 (193)
                      ..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++. +.+++..                        
T Consensus       100 ~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            999999999999999998 78899999999999999999999999984 4454432                        


Q ss_pred             ------------------------------cccCccHHhHHHHh---CcHHHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          139 ------------------------------TIWSETVLHLCVKH---NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       139 ------------------------------~~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                                                    +..|.||||+|+..   +..+++++|++.|++   ++.+|..|.||||+|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A  254 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVA  254 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHH
Confidence                                          35678999999998   668999999999998   899999999999999


Q ss_pred             HhcCCccC
Q 029474          186 VADKQIEV  193 (193)
Q Consensus       186 ~~~~~~ei  193 (193)
                      +..|+.++
T Consensus       255 ~~~g~~~~  262 (351)
T 3utm_A          255 AERAHNDV  262 (351)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCCHHH
Confidence            99998763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.1e-37  Score=223.73  Aligned_cols=182  Identities=18%  Similarity=0.206  Sum_probs=162.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHH--------hcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCC
Q 029474            3 RMESLLYEASVEGNITTLLQLL--------EQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRR   74 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll--------~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   74 (193)
                      .+.||||+|+..|+.++++.|+        +.+.   +++..|..|.||||+|+..|+.++|++|++++..+ +.++..|
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga---~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g  199 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA---DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSE  199 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC---CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCC
Confidence            5789999999999998888876        5675   45567899999999999999999999999999887 6779999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhhC---CCccccccCCCCcHHHHHHHcC---CHHHHHHHHHhCCCcccc--------ccc
Q 029474           75 SSPLHMAAQKGYVEIVKELLQVN---PDMCLARDVDGRNPLHMAAMKG---RIQVLVDLFRARPFAAYA--------TTI  140 (193)
Q Consensus        75 ~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~--------~~~  140 (193)
                      .||||+|+..|+.+++++|++++   .++ +..+..|.||||+|+..+   +.+++++|++. +.+++.        .+.
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~  277 (373)
T 2fo1_E          200 RSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKY  277 (373)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccc
Confidence            99999999999999999999987   566 778899999999999998   89999999985 445553        567


Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhc-CccccccccCCCCchHHHHHHhcCCccC
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIM-NDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .|.||||+|+..|+.+++++|++++ ++   ++.+|..|.||||+|+..|+.++
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~~i  328 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEV  328 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCHHH
Confidence            8999999999999999999999987 77   89999999999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-36  Score=215.53  Aligned_cols=156  Identities=26%  Similarity=0.293  Sum_probs=135.3

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccc-------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGE-------------   69 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~-------------   69 (193)
                      .+.||||+|+..|+.+++++|++.+++   ++..+..|.||||+|+..|+.+++++|++++..+...             
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B           72 DGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh
Confidence            568999999999999999999999974   4567889999999999999999999999987654110             


Q ss_pred             ----------------------------------------------cccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccc
Q 029474           70 ----------------------------------------------LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA  103 (193)
Q Consensus        70 ----------------------------------------------~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  103 (193)
                                                                    .+..|.||||+|+..|+.+++++|+++|.++ +.
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~  227 (299)
T 1s70_B          149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NI  227 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TC
T ss_pred             cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CC
Confidence                                                          2346889999999999999999999999998 88


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474          104 RDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus       104 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      .+..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||+++|+.. ..+.++.+++.
T Consensus       228 ~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          228 KDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            89999999999999999999999998 6789999999999999999764 45555555554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-36  Score=217.76  Aligned_cols=171  Identities=12%  Similarity=0.071  Sum_probs=129.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCC---hHHHHHHHhcCCccccccccCCCCHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGH---LDFAKEILRRTPVLAGELDSRRSSPLH   79 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~l~   79 (193)
                      .+.||||+|+..|+.+++++|++.++   +++.+|..|.||||+|+..|+   .++++.|++.+....+.++..|.||||
T Consensus       130 ~g~TpLh~Aa~~g~~~~v~~Ll~~Ga---d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  206 (327)
T 1sw6_A          130 HGNTPLHWLTSIANLELVKHLVKHGS---NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  206 (327)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC---CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHH
Confidence            56788888888888888888888886   444667788888888888877   667777777664434677888888888


Q ss_pred             HHHH----cCCHHHHHHHHhh--------------------CCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCcc
Q 029474           80 MAAQ----KGYVEIVKELLQV--------------------NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAA  135 (193)
Q Consensus        80 ~a~~----~~~~~~~~~ll~~--------------------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  135 (193)
                      +|+.    .|+.+++++|++.                    +.++ +..+..|.||||.|+.      +++|++.   ++
T Consensus       207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~---~~  276 (327)
T 1sw6_A          207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN---ML  276 (327)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TT
T ss_pred             HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh---CC
Confidence            8887    7888888888876                    5665 6677788888888774      6777764   57


Q ss_pred             ccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          136 YATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       136 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      +..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+++|
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence            88899999999999999999999999999999   8999999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.7e-35  Score=197.38  Aligned_cols=155  Identities=22%  Similarity=0.250  Sum_probs=141.0

Q ss_pred             hhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHH
Q 029474           33 KVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPL  112 (193)
Q Consensus        33 ~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l  112 (193)
                      .+.+|..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+..++.+++++|++++.++ +..+..|.|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence            3457888999999999999999999999988766 677889999999999999999999999999988 78888999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          113 HMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       113 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      |+|+..++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.||+|+|+..|+.+
T Consensus       106 ~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHH
Confidence            99999999999999998 5778889999999999999999999999999999988   8899999999999999999876


Q ss_pred             C
Q 029474          193 V  193 (193)
Q Consensus       193 i  193 (193)
                      +
T Consensus       182 ~  182 (192)
T 2rfm_A          182 V  182 (192)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=8.7e-36  Score=204.07  Aligned_cols=172  Identities=23%  Similarity=0.236  Sum_probs=154.3

Q ss_pred             CCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 029474           15 GNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL   94 (193)
Q Consensus        15 g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   94 (193)
                      |+.+++++|++.+.+...  ..|..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+..++.+++++|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCccc--ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            677888899999875432  24788999999999999999999999998876 677999999999999999999999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCcccccccc
Q 029474           95 QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAK  174 (193)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  174 (193)
                      +.+....+..+..|.||||+|+..++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~  154 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQ  154 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCC
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCc
Confidence            99885447888999999999999999999999998 6778999999999999999999999999999999998   8999


Q ss_pred             CCCCchHHHHHHhcCCccC
Q 029474          175 DDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       175 d~~g~tpl~~A~~~~~~ei  193 (193)
                      |..|.||||+|+..|+.++
T Consensus       155 ~~~g~t~L~~A~~~~~~~~  173 (223)
T 2f8y_A          155 NNREETPLFLAAREGSYET  173 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHH
T ss_pred             CCCCcCHHHHHHHcCCHHH
Confidence            9999999999999998753

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.6e-34  Score=188.92  Aligned_cols=157  Identities=26%  Similarity=0.411  Sum_probs=134.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ...++|+.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA   88 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            357889999999999999999998864   4456788899999999999999999999888776 667888899999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++ .+.+++.++..|.||+++|+..++.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999998887 7778888999999999999999999988 56788888888999999999999999999988


Q ss_pred             Hhc
Q 029474          163 SIM  165 (193)
Q Consensus       163 ~~g  165 (193)
                      ++|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.6e-34  Score=189.57  Aligned_cols=159  Identities=23%  Similarity=0.225  Sum_probs=147.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.||||.|+..|+.+.+++|++.+.   +++..+..|.||||+|+..|+.+++++|++++..+ +..+..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN---VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC---CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            46899999999999999999999986   45567889999999999999999999999998776 677899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|.||+++|+..|+.+++++|+
T Consensus        78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999998 7889999999999999999999999998 67789999999999999999999999999999


Q ss_pred             HhcCc
Q 029474          163 SIMND  167 (193)
Q Consensus       163 ~~g~~  167 (193)
                      +++.+
T Consensus       156 ~~~~~  160 (167)
T 3v31_A          156 SHLLK  160 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-35  Score=205.45  Aligned_cols=181  Identities=17%  Similarity=0.147  Sum_probs=160.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc-----cccccccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV-----LAGELDSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~~~   77 (193)
                      .+.||||+|+..|+.+++++|++.+.   +++..+..|.||||+|+..|+.+++++|++.+..     ..+..+..|.||
T Consensus        44 ~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  120 (236)
T 1ikn_D           44 LQQTPLHLAVITNQPEIAEALLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC  120 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSCCC---CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCH
Confidence            46899999999999999999999987   4456788999999999999999999999998853     235678889999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccC-CCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHH
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDV-DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE  156 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (193)
                      ||+|+..|+.+++++|+++|.++ +..+. .|.||||+|+..|+.+++++|++ .+.+++.++..|.|||++|+..++.+
T Consensus       121 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~  198 (236)
T 1ikn_D          121 LHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTR  198 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchH
Confidence            99999999999999999999998 66676 99999999999999999999998 67899999999999999999999999


Q ss_pred             HHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       157 ~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      ++++|+++|++.. ...++..|.||.+.+....
T Consensus       199 ~~~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          199 IQQQLGQLTLENL-QMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             HHHHHHTTSCGGG-SSCCCCCTTTCCCCC----
T ss_pred             HHHHHHHcchhhh-hcCCccchHHHHhhhcccc
Confidence            9999999999743 4588899999987665543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.6e-34  Score=193.69  Aligned_cols=157  Identities=20%  Similarity=0.207  Sum_probs=147.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.+++++|++.+.   +++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFD---KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSI  109 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcc---ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            57899999999999999999999986   44567888999999999999999999999999876 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++ .+.+++.++..|.||+++|+..++.+++++|+
T Consensus       110 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            999999999999999998 8889999999999999999999999998 57799999999999999999999999999999


Q ss_pred             Hhc
Q 029474          163 SIM  165 (193)
Q Consensus       163 ~~g  165 (193)
                      ++|
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.2e-34  Score=188.93  Aligned_cols=149  Identities=23%  Similarity=0.249  Sum_probs=140.0

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 029474           39 HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK  118 (193)
Q Consensus        39 ~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~  118 (193)
                      .|.||||.|+..|+.+++++|++.+... +.++..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            4789999999999999999999998775 778999999999999999999999999999988 77889999999999999


Q ss_pred             CCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          119 GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       119 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..|+.++
T Consensus        80 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~  150 (167)
T 3v31_A           80 GYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSV  150 (167)
T ss_dssp             TCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHH
Confidence            99999999998 5678889999999999999999999999999999998   88999999999999999998763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.6e-34  Score=189.94  Aligned_cols=167  Identities=23%  Similarity=0.256  Sum_probs=151.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.++|+.|+..|+++.++.|++.++.  +++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            567899999999999999999998653  44567889999999999999999999999998876 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|.||+++|+..++.+++++|+
T Consensus        81 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 8889999999999999999999999998 67799999999999999999999999999999


Q ss_pred             HhcCccccccccCCC
Q 029474          163 SIMNDRDFLNAKDDY  177 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~  177 (193)
                      ++|++   ++..+..
T Consensus       159 ~~g~~---~~~~~~~  170 (179)
T 3f6q_A          159 KMGQN---LNRIPYK  170 (179)
T ss_dssp             HTTCC---CSCBCCC
T ss_pred             HhhcC---cccCCcc
Confidence            99998   5555443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.4e-34  Score=206.03  Aligned_cols=181  Identities=19%  Similarity=0.166  Sum_probs=158.0

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhh-------hhccCCCCCcHHHHHHHcCChHHHHHHHhc-CCccccccccCC
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILD-------KVVTNRHHETPLHVAALRGHLDFAKEILRR-TPVLAGELDSRR   74 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~-------~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~   74 (193)
                      .+.|||+.|+..|+.++++.+++.++++..       ....+..|.||||+|+..|+.++|++|+++ +..+ +.++..|
T Consensus       124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g  202 (337)
T 4g8k_A          124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMG  202 (337)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTS
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCC
Confidence            467999999999999999999999876521       123456799999999999999999999976 4554 7889999


Q ss_pred             CCHHHHHHHcCC----HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHH
Q 029474           75 SSPLHMAAQKGY----VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCV  150 (193)
Q Consensus        75 ~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  150 (193)
                      .++++.++..+.    ..++++|+++|.++ +..+..|+||||+|+..|+.++++.|++..+.+++.+|..|+||||+|+
T Consensus       203 ~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~  281 (337)
T 4g8k_A          203 RNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  281 (337)
T ss_dssp             CCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH
T ss_pred             CcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH
Confidence            999998876543    46889999999998 8889999999999999999999999998778899999999999999999


Q ss_pred             HhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          151 KHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       151 ~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..|+.+++++|+++|++   ++     ..+|||+|+.+|+.+|
T Consensus       282 ~~g~~~iv~~Ll~~GAd---~n-----~~~~L~~A~~~~~~~i  316 (337)
T 4g8k_A          282 ELKLKKIAELLCKRGAS---TD-----CGDLVMTARRNYDHSL  316 (337)
T ss_dssp             HTTCHHHHHHHHTTSCS---ST-----TCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHCCCC---CC-----CCCHHHHHHHcCCHHH
Confidence            99999999999999998   55     3469999999998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-33  Score=182.05  Aligned_cols=152  Identities=24%  Similarity=0.315  Sum_probs=121.4

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      +..++|+.|+..|+.+.+++|++.+...    ..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAA   75 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCC----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCC----CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            3567888888888888888888887643    14677888888888888888888888877765 566778888888888


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      ..++.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++ .+.+++.++..|+||+++|+..|+.+++++|
T Consensus        76 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            888888888888888877 6777788888888888888888888887 4667777788888888888888888888776

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5e-34  Score=188.03  Aligned_cols=149  Identities=27%  Similarity=0.289  Sum_probs=139.5

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG  119 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~  119 (193)
                      +.+|||.|+..|+.+++++|++.+....+.++..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4689999999999999999999998866888999999999999999999999999999998 788999999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       120 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..++.++
T Consensus        81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           81 YTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHH
Confidence            9999999998 6778999999999999999999999999999999998   89999999999999999998763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=5.7e-34  Score=186.56  Aligned_cols=158  Identities=22%  Similarity=0.227  Sum_probs=141.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.++|+.|+..|+.+.++.|++.++  .+....+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTT--TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCC--CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            67899999999999999999998764  244456778899999999999999999999998876 677899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..++.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++.++..|+||+++|+. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            999999999999999998 7888999999999999999999999998 577899999999999999776 8999999999


Q ss_pred             HhcC
Q 029474          163 SIMN  166 (193)
Q Consensus       163 ~~g~  166 (193)
                      +.|+
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            8775

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.5e-33  Score=190.10  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=145.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.||||+|+..|+.+++++|++.++   +++..+..|.||||+|+..|+.+++++|++++....+.++..|.||||+|+
T Consensus        38 ~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  114 (201)
T 3hra_A           38 EGNTPLNIAVHNNDIEIAKALIDRGA---DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA  114 (201)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH
Confidence            56899999999999999999999997   445678899999999999999999999997766555788999999999999


Q ss_pred             HcCCHHHHHHHHhhC-CCccccccCCCCcHHHHHHHcCC-----HHHHHHHHHhCCCccccccccCccHHhHHHHhCcHH
Q 029474           83 QKGYVEIVKELLQVN-PDMCLARDVDGRNPLHMAAMKGR-----IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE  156 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (193)
                      ..++.+++++|++++ .++ +..+..|.||||+|+..++     .+++++|++ .+.+++.++..|+||||+|+..|+.+
T Consensus       115 ~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~  192 (201)
T 3hra_A          115 EKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTE  192 (201)
T ss_dssp             HTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHh
Confidence            999999999999999 665 8889999999999999988     999999998 67899999999999999999999999


Q ss_pred             HHHHHHHhc
Q 029474          157 ALKFLVSIM  165 (193)
Q Consensus       157 ~~~~Ll~~g  165 (193)
                      ++++|+++|
T Consensus       193 ~~~~Ll~~G  201 (201)
T 3hra_A          193 ISKILAQYN  201 (201)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHhcC
Confidence            999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=5.3e-34  Score=184.56  Aligned_cols=147  Identities=24%  Similarity=0.337  Sum_probs=137.6

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG  119 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~  119 (193)
                      ..++|+.|++.|+.+++++|++++... + .+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            358999999999999999999998865 3 5888999999999999999999999999998 788999999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       120 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+.+|+.+|
T Consensus        79 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B           79 HANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHH
Confidence            9999999998 6778999999999999999999999999999999998   89999999999999999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=9.3e-34  Score=186.29  Aligned_cols=151  Identities=26%  Similarity=0.379  Sum_probs=140.4

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                      ...+.++|+.|++.|+.+++++|++++... +.++..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            455679999999999999999999998876 677999999999999999999999999999988 788999999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..++.++
T Consensus        89 ~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~  161 (169)
T 2y1l_E           89 LFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDL  161 (169)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHH
Confidence            9999999999998 6778899999999999999999999999999999998   88999999999999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.4e-33  Score=193.08  Aligned_cols=162  Identities=20%  Similarity=0.231  Sum_probs=144.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhh--hccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccccc--------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDK--VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDS--------   72 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~--~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------   72 (193)
                      .+.||||+|+..|+.++++.|++.+++....  ...+..|.||||+|+..|+.+++++|++++... +..+.        
T Consensus        36 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~  114 (232)
T 2rfa_A           36 MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRP  114 (232)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecc
Confidence            5789999999999999999999999865322  345778999999999999999999999998776 34333        


Q ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHH----HHHHHhCCCcc------cc
Q 029474           73 -----RRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL----VDLFRARPFAA------YA  137 (193)
Q Consensus        73 -----~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~----~~ll~~~~~~~------~~  137 (193)
                           .|.||||+|+..|+.+++++|+++|.++ +..|..|.||||+|+..++.+++    ++|++.+ .+.      +.
T Consensus       115 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~  192 (232)
T 2rfa_A          115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELV  192 (232)
T ss_dssp             TCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-Cchhhhhhhcc
Confidence                 7999999999999999999999999998 88899999999999999999988    8888844 444      57


Q ss_pred             ccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          138 TTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       138 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ++..|+||||+|+..|+.+++++|+++|..
T Consensus       193 ~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          193 PNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            899999999999999999999999999976

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=2.5e-33  Score=181.84  Aligned_cols=155  Identities=24%  Similarity=0.331  Sum_probs=141.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.++|+.|+..|+.+.++.|++...  .+++..+..|.||||+ +..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAA   76 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTC--CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhC--cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence            46799999999999999999999832  2455678899999999 9999999999999998876 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++.  .+++..+..|.|||++|+..|+.+++++|+
T Consensus        77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999988 78889999999999999999999999985  788899999999999999999999999998


Q ss_pred             Hh
Q 029474          163 SI  164 (193)
Q Consensus       163 ~~  164 (193)
                      ++
T Consensus       154 ~~  155 (156)
T 1bd8_A          154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            74

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=202.27  Aligned_cols=169  Identities=22%  Similarity=0.260  Sum_probs=140.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.||||+|+..|+.++++.|++.+++   +...+..|.||++.|+..++.+++++|++.+..+ +.++..|.||||+|+
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~  160 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYAC  160 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            578999999999999999999999974   4567889999999999999999999999999887 778999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCc-HHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ-LEALKFL  161 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~L  161 (193)
                      ..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .|.+++.+|..|+||||+|+.++. .++++++
T Consensus       161 ~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l  238 (269)
T 4b93_B          161 SGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIMELLQVV  238 (269)
T ss_dssp             HTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-
T ss_pred             HCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHH
Confidence            999999999999999998 8889999999999999999999999998 678999999999999999998876 4666666


Q ss_pred             HHhcCccccccccCCC
Q 029474          162 VSIMNDRDFLNAKDDY  177 (193)
Q Consensus       162 l~~g~~~~~~~~~d~~  177 (193)
                      .+.++...++..+|..
T Consensus       239 ~~~~~~~~~~~~td~~  254 (269)
T 4b93_B          239 PSCVASLDDVAETDRK  254 (269)
T ss_dssp             ----------------
T ss_pred             HHhchhhhhccCCChh
Confidence            6666554334444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=209.44  Aligned_cols=181  Identities=17%  Similarity=0.074  Sum_probs=149.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.++|+.|+..|+.++++.|++.+.   +++..|..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMN---DPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            46788999999999999999999886   44567888999999999999999999999988776 677888999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccc-cCCCCcHHHHH--HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLAR-DVDGRNPLHMA--AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK  159 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (193)
                      ..|+.+++++|++.|.++ +.. +..|.||||+|  +..++.+++++|++ .+.+++..+..|.++++.++.....   +
T Consensus        96 ~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~---~  170 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVYALWDYSAEFGD---E  170 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEEESSCBCCSSTT---B
T ss_pred             HcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchHHHHHHhhcccc---c
Confidence            999999999999999888 444 46899999998  88899999999998 4567888888888888865544332   5


Q ss_pred             HHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          160 FLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       160 ~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +|++.|++.. ++.+|..|.||||+|+.+|+.++
T Consensus       171 ~ll~~ga~~~-~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          171 LSFREGESVT-VLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             CCBCTTCEEE-EEESSCTTCSSEEEEEETTEEEE
T ss_pred             cCcccccccc-ccccCCCcccHHHHHHHcCCcce
Confidence            6777776532 67889999999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.2e-34  Score=210.40  Aligned_cols=185  Identities=16%  Similarity=0.086  Sum_probs=153.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhc----Ccchhh--------------hhccCCCCCcHHHHHHHcC--ChHHHHHHHhc
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQ----DPLILD--------------KVVTNRHHETPLHVAALRG--HLDFAKEILRR   62 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~----~~~~~~--------------~~~~~~~g~~~L~~A~~~~--~~~~v~~Ll~~   62 (193)
                      ++.|||++|+..|+.++++.|++.    +.....              .+..+..|.||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            455666666666666666666666    332211              1116778999999999999  99999999999


Q ss_pred             CCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCC-----ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 029474           63 TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD-----MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYA  137 (193)
Q Consensus        63 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  137 (193)
                      +..+ +.++..|.||||+|+..|+.+++++|++++.+     + +..+..|.||||+|+..|+.+++++|++ .+.+++.
T Consensus       163 ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~  239 (364)
T 3ljn_A          163 GASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNM  239 (364)
T ss_dssp             TCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTC
T ss_pred             CCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCC
Confidence            8886 77899999999999999999999999999988     6 7889999999999999999999999998 6789999


Q ss_pred             ccccCccHHhHHHHhCcHHHHHHHHHhcCccccc---------cccCCCCchHHHHHHhcCC
Q 029474          138 TTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFL---------NAKDDYGMSILHLAVADKQ  190 (193)
Q Consensus       138 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---------~~~d~~g~tpl~~A~~~~~  190 (193)
                      .|..|+||||+|+..|+.+++++|+++|++....         ...+..+.||+++|+..++
T Consensus       240 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~  301 (364)
T 3ljn_A          240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS  301 (364)
T ss_dssp             CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred             CCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence            9999999999999999999999999998763211         1256778888887776654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.1e-33  Score=183.26  Aligned_cols=149  Identities=23%  Similarity=0.244  Sum_probs=138.1

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 029474           39 HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK  118 (193)
Q Consensus        39 ~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~  118 (193)
                      ...+|||.|+..|+.+++++|++++... +.++..|.||||+|+. |+.+++++|+++|.++ +..+..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            3568999999999999999999998776 6779999999999999 9999999999999988 78899999999999999


Q ss_pred             CCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          119 GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       119 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++.  ++.+|..|.||||+|+..|+.++
T Consensus        81 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~  152 (162)
T 1ihb_A           81 GFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEV  152 (162)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHH
Confidence            99999999998 66789999999999999999999999999999999873  57899999999999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.8e-33  Score=198.16  Aligned_cols=175  Identities=19%  Similarity=0.162  Sum_probs=142.4

Q ss_pred             hhhHHHHHHHHh---CCHHHHHHHHhcCcchhh----hh----ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccc
Q 029474            3 RMESLLYEASVE---GNITTLLQLLEQDPLILD----KV----VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD   71 (193)
Q Consensus         3 ~~~~~L~~A~~~---g~~~~~~~ll~~~~~~~~----~~----~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   71 (193)
                      .+.||||+|+..   |+.+++++|++.++....    ++    ..|..|.||||+|+..|+.+++++|++++..+ +.++
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~  131 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAA  131 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCB
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccc
Confidence            578999999987   999999999999865311    11    24568999999999999999999999998876 5556


Q ss_pred             c--------------CCCCHHHHHHHcCCHHHHHHHHh---hCCCccccccCCCCcHHHHHHHcCC---------HHHHH
Q 029474           72 S--------------RRSSPLHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAMKGR---------IQVLV  125 (193)
Q Consensus        72 ~--------------~~~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~  125 (193)
                      .              .|.||||+|+..|+.+++++|++   .|.++ +..+..|+||||+|+..++         .++++
T Consensus       132 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~  210 (273)
T 2pnn_A          132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYN  210 (273)
T ss_dssp             CSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHH
Confidence            5              79999999999999999999999   89988 8889999999999999988         78999


Q ss_pred             HHHHhCCCccc-------cccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHH
Q 029474          126 DLFRARPFAAY-------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSIL  182 (193)
Q Consensus       126 ~ll~~~~~~~~-------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl  182 (193)
                      +|++. +.+++       ..|..|+||||+|+..|+.+++++|+++|+..  +......+.+|-
T Consensus       211 ~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d--p~~~~~~~~~~~  271 (273)
T 2pnn_A          211 EILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE--PECRHAAAHHHH  271 (273)
T ss_dssp             HHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHh-hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC--chhhhhhhhhcc
Confidence            99984 44554       58999999999999999999999999999932  555666665554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=6.7e-34  Score=186.23  Aligned_cols=151  Identities=28%  Similarity=0.354  Sum_probs=138.4

Q ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 029474           36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA  115 (193)
Q Consensus        36 ~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a  115 (193)
                      .+..|.++||.|++.|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            35668899999999999999999999777666777888999999999999999999999999998 88899999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +..++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+. ++.+
T Consensus        83 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           83 CSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHH
T ss_pred             HHcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChH
Confidence            99999999999998 6778999999999999999999999999999999998   89999999999999876 6544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.9e-33  Score=197.61  Aligned_cols=168  Identities=18%  Similarity=0.179  Sum_probs=149.2

Q ss_pred             HHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHH
Q 029474           12 SVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVK   91 (193)
Q Consensus        12 ~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   91 (193)
                      +...+.+.+..++..+    +++..|..|.||||+|+..|+.+++++|++++..+ +..  +|.||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK----DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHST----TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHH
Confidence            4566777777777765    45678999999999999999999999999998876 433  5999999999999999999


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccC-ccHHhHHHHhCcHHHHHHHHHhcCcccc
Q 029474           92 ELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS-ETVLHLCVKHNQLEALKFLVSIMNDRDF  170 (193)
Q Consensus        92 ~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  170 (193)
                      +|+++|.++ +..+..|.||||+|+..|+.+++++|++. +.+++..+..| .||||+|+..|+.+++++|+++|++   
T Consensus        80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---  154 (285)
T 3kea_A           80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---  154 (285)
T ss_dssp             HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---
T ss_pred             HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---
Confidence            999999998 78899999999999999999999999985 77899999999 8999999999999999999999977   


Q ss_pred             ccccCC-CCchHHHHHHhcCCccC
Q 029474          171 LNAKDD-YGMSILHLAVADKQIEV  193 (193)
Q Consensus       171 ~~~~d~-~g~tpl~~A~~~~~~ei  193 (193)
                      .  .+. .|.||||+|+..|+.++
T Consensus       155 ~--~~~~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          155 T--FDLAILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             T--CCCSTHHHHHHHHHHTTCHHH
T ss_pred             c--ccccCCccHHHHHHHcChHHH
Confidence            2  333 89999999999998763

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.5e-33  Score=196.76  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=144.2

Q ss_pred             hhhHHHHHHHHh---CCHHHHHHHHhcCcchhhhh--------ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccc
Q 029474            3 RMESLLYEASVE---GNITTLLQLLEQDPLILDKV--------VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD   71 (193)
Q Consensus         3 ~~~~~L~~A~~~---g~~~~~~~ll~~~~~~~~~~--------~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   71 (193)
                      .+.||||+|+..   |+.++++.|++.++......        ..|..|.||||+|+..|+.+++++|++++..+ +.++
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~  120 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRA  120 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccc
Confidence            578999999999   99999999999987543221        23467999999999999999999999998876 5556


Q ss_pred             cC-------------CCCHHHHHHHcCCHHHHHHHHh---hCCCccccccCCCCcHHHHHHH--cCCHH-------HHHH
Q 029474           72 SR-------------RSSPLHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAM--KGRIQ-------VLVD  126 (193)
Q Consensus        72 ~~-------------~~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~l~~a~~--~~~~~-------~~~~  126 (193)
                      ..             |.||||+|+..|+.+++++|++   .|.++ +..+..|+||||+|+.  .++.+       ++++
T Consensus       121 ~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~  199 (256)
T 2etb_A          121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDG  199 (256)
T ss_dssp             CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHH
Confidence            54             9999999999999999999999   89998 8889999999999999  78888       9999


Q ss_pred             HHHhCCCcc-------ccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          127 LFRARPFAA-------YATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       127 ll~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      |++. +.++       +.+|..|+||||+|+..|+.+++++|+++|.+
T Consensus       200 Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          200 LLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHc-CCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            9984 5567       88999999999999999999999999999976

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=6.1e-33  Score=180.04  Aligned_cols=147  Identities=24%  Similarity=0.318  Sum_probs=135.9

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG  119 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~  119 (193)
                      +.++||.|+..|+.+++++|+++.....+..+..|.||||+ +..|+.+++++|+++|.++ +..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            46899999999999999999998433457789999999999 9999999999999999998 888999999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       120 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|+++ ++   ++.+|..|.||||+|+..|+.++
T Consensus        80 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A           80 FLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             cHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHH
Confidence            9999999998 6678999999999999999999999999999998 66   89999999999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=9.3e-33  Score=194.79  Aligned_cols=160  Identities=22%  Similarity=0.247  Sum_probs=147.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHH-----HcCChHHHHHHHhcCCccccccccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAA-----LRGHLDFAKEILRRTPVLAGELDSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   77 (193)
                      .+.||||+|+..|+.++++.|++.++.  +++..+..|.||||+|+     ..++.+++++|++.+... +..+..|.||
T Consensus       110 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tp  186 (276)
T 4hbd_A          110 NGNTALHYSVSHANFPVVQQLLDSGVC--KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTA  186 (276)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTSCC--CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCC--cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCH
Confidence            578999999999999999999999972  34567889999999999     668899999999999766 6678899999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      ||+|+..|+.+++++|++.|.++ +..|..|.||||+|+..|+.+++++|++..+.+++.+|..|+||||+|+..|+.++
T Consensus       187 Lh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~i  265 (276)
T 4hbd_A          187 LMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI  265 (276)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999998 88899999999999999999999999986788999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 029474          158 LKFLVSIMN  166 (193)
Q Consensus       158 ~~~Ll~~g~  166 (193)
                      +++|++++.
T Consensus       266 v~~Ll~~~~  274 (276)
T 4hbd_A          266 ASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHhccC
Confidence            999999753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2.3e-33  Score=186.04  Aligned_cols=149  Identities=19%  Similarity=0.171  Sum_probs=136.7

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH
Q 029474           38 RHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAM  117 (193)
Q Consensus        38 ~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~  117 (193)
                      .++.++|+.|+..|+.+++++|++.+....+.++..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            457899999999999999999999977666888999999999999999999999999999998 7889999999999999


Q ss_pred             cCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          118 KGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       118 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      .++.+++++|++ .+.+++..+..|+||||+|+..++.+++++|+++|++   ++.+|..|.|||++|+..++.
T Consensus        82 ~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A           82 HGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHH
T ss_pred             cCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHH
Confidence            999999999998 5779999999999999999999999999999999999   899999999999999876654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=100.00  E-value=1.1e-33  Score=195.77  Aligned_cols=181  Identities=22%  Similarity=0.183  Sum_probs=131.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.|||+.|+..|+.+.++.|++.+.++.    .+..|.||||.|+..|+.+++++|++.+..+ +.++..|.||||+|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~----~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcc----cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            57899999999999999999999997552    2467899999999999999999999999865 778999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCc-cHHhHH--HHhCcHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE-TVLHLC--VKHNQLEALK  159 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~  159 (193)
                      ..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++ .+.+++..+..|. ||+|+|  +..|+.++++
T Consensus        79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            999999999999999998 8889999999999999999999999998 5678888887777 999999  7889999999


Q ss_pred             HHHHhcCccccccc------cCCCCchHHHHHHhcCC
Q 029474          160 FLVSIMNDRDFLNA------KDDYGMSILHLAVADKQ  190 (193)
Q Consensus       160 ~Ll~~g~~~~~~~~------~d~~g~tpl~~A~~~~~  190 (193)
                      +|+++|++....+.      .+..+.+|++++...|.
T Consensus       157 ~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99999988432222      27778888888777664

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=5.5e-33  Score=194.32  Aligned_cols=163  Identities=16%  Similarity=0.093  Sum_probs=142.9

Q ss_pred             hhhHHHHHHH---HhCCHHHHHHHHhcCcchhh--------hhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccc
Q 029474            3 RMESLLYEAS---VEGNITTLLQLLEQDPLILD--------KVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD   71 (193)
Q Consensus         3 ~~~~~L~~A~---~~g~~~~~~~ll~~~~~~~~--------~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   71 (193)
                      .+.||||+|+   ..|+.++++.|++.++....        ....|..|.||||+|+..|+.++|++|++++..+ +.++
T Consensus        45 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~  123 (260)
T 3jxi_A           45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQA  123 (260)
T ss_dssp             TCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             CCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Cccc
Confidence            4789999999   77999999999998864321        1233447999999999999999999999999877 5556


Q ss_pred             --------------cCCCCHHHHHHHcCCHHHHHHHHh---hCCCccccccCCCCcHHHHHHHcCC---------HHHHH
Q 029474           72 --------------SRRSSPLHMAAQKGYVEIVKELLQ---VNPDMCLARDVDGRNPLHMAAMKGR---------IQVLV  125 (193)
Q Consensus        72 --------------~~~~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~  125 (193)
                                    ..|.||||+|+..|+.+++++|++   .|.++ +..+..|+||||+|+..++         .++++
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence                          589999999999999999999999   89998 8899999999999998887         78999


Q ss_pred             HHHHhCCCcc-------ccccccCccHHhHHHHhCcHHHHHHHHHhcCcc
Q 029474          126 DLFRARPFAA-------YATTIWSETVLHLCVKHNQLEALKFLVSIMNDR  168 (193)
Q Consensus       126 ~ll~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  168 (193)
                      +|++. +.++       +..+..|+||||+|+..|+.+++++|+++|.+.
T Consensus       203 ~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          203 LLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHh-CcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            99984 4565       678999999999999999999999999999763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.2e-32  Score=187.88  Aligned_cols=164  Identities=18%  Similarity=0.189  Sum_probs=139.2

Q ss_pred             HHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCC
Q 029474           20 LLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD   99 (193)
Q Consensus        20 ~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~   99 (193)
                      ++.|++.+......+..+..|.||||.|+..|+.+++++|++++..+ +.++..|.||||+|+..|+.+++++|++.|.+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            45678888766555556777889999999999999999999999876 77899999999999999999999999999999


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccc-ccCccHHhHH--HHhCcHHHHHHHHHhcCccccccccCC
Q 029474          100 MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATT-IWSETVLHLC--VKHNQLEALKFLVSIMNDRDFLNAKDD  176 (193)
Q Consensus       100 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~d~  176 (193)
                      + +..+..|.||||+|+..|+.+++++|++ .+.+++..+ ..|+||||+|  +..++.+++++|+++|++   ++..|.
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~  154 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNS  154 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGG
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccC
Confidence            8 8889999999999999999999999998 567787775 6999999999  999999999999999998   888999


Q ss_pred             CCchHHHHHHhcC
Q 029474          177 YGMSILHLAVADK  189 (193)
Q Consensus       177 ~g~tpl~~A~~~~  189 (193)
                      .|.||++.++..+
T Consensus       155 ~~~~~l~~~~~~~  167 (229)
T 2vge_A          155 GAVYALWDYSAEF  167 (229)
T ss_dssp             GEEEESSCBCCSS
T ss_pred             CchHHHHHHhhcc
Confidence            9999998554433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-31  Score=193.57  Aligned_cols=171  Identities=16%  Similarity=0.079  Sum_probs=135.8

Q ss_pred             HHHHHHhCCHHHHHHHHhcCcchhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC
Q 029474            8 LYEASVEGNITTLLQLLEQDPLILDKVV-TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus         8 L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      ++.|+..+..++++.|++.+.   +++. .|..|.||||+|+..|+.++|++|++++..+ +.++..|.||||+|+..|+
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~---dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQL---NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCC---CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred             hHHHHHhhHHHHHHHHHhcCC---CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcc
Confidence            466777777788888888886   4455 6899999999999999999999999999887 7889999999999999998


Q ss_pred             ---HHHHHHHHhhCCCccccccCCCCcHHHHHHH----cCCHHHHHHHHHhC-------------------CCccccccc
Q 029474           87 ---VEIVKELLQVNPDMCLARDVDGRNPLHMAAM----KGRIQVLVDLFRAR-------------------PFAAYATTI  140 (193)
Q Consensus        87 ---~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~~-------------------~~~~~~~~~  140 (193)
                         .++++.|++.+....+..+..|+||||+|+.    .|+.+++++|++..                   +.+++..+.
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence               6777888887633338889999999999999    89999999999753                   678889999


Q ss_pred             cCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       141 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .|.||||.|+.      +++|+++  +   ++.+|..|.||||+|+..|+.++
T Consensus       257 ~g~t~L~~a~~------~~~Ll~~--~---~n~~d~~G~TpLh~A~~~g~~~~  298 (327)
T 1sw6_A          257 ERKDSILENLD------LKWIIAN--M---LNAQDSNGDTCLNIAARLGNISI  298 (327)
T ss_dssp             ---CHHHHHCS------HHHHHHH--T---TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             cCCChhHHHHH------HHHHHHh--C---CCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999985      8999987  3   78999999999999999998764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.5e-30  Score=165.09  Aligned_cols=132  Identities=19%  Similarity=0.268  Sum_probs=122.8

Q ss_pred             hhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCC-CCc
Q 029474           32 DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD-GRN  110 (193)
Q Consensus        32 ~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~  110 (193)
                      +++..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+. ++.+++++|++++.++ +..+.. |.|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCC
Confidence            44567889999999999999999999999998776 6779999999999999 9999999999999998 778888 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          111 PLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       111 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      |||+|+..++.+++++|++ .+.+++.++..|+||||+|+..++.+++++|+++|++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999998 6678999999999999999999999999999999975

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=4.6e-31  Score=171.25  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCc-HHH
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRN-PLH  113 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~l~  113 (193)
                      ..+..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+ .|+.+++++|+++|.++ +..+..|.| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence            34677899999999999999999999998776 677899999999985 89999999999999998 888999999 999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          114 MAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       114 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                      +|+..|+.+++++|++ .+.+++.++..|+||||+|+..++.+++++|+++|++   ++.++..|.||.+-+
T Consensus        84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HHHHCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence            9999999999999998 4678999999999999999999999999999999999   889999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=2.4e-31  Score=177.02  Aligned_cols=163  Identities=14%  Similarity=0.096  Sum_probs=135.9

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCCh----HHHHHHHhcCCccccccccCCCCHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHL----DFAKEILRRTPVLAGELDSRRSSPLH   79 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~l~   79 (193)
                      ..++|+.|++.|+++.++.++..+.+..+    +..|.||||+|+..|+.    +++++|+++|..+ +.++..|.||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            34789999999999999999988753221    25689999999999875    5899999999887 778899999999


Q ss_pred             HHHHcCC------HHHHHHHHhhCCCccccccCCCC-cHHHHHHHcC-----CHHHHHHHHHhCCCccccccccCccHHh
Q 029474           80 MAAQKGY------VEIVKELLQVNPDMCLARDVDGR-NPLHMAAMKG-----RIQVLVDLFRARPFAAYATTIWSETVLH  147 (193)
Q Consensus        80 ~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~ll~~~~~~~~~~~~~g~t~l~  147 (193)
                      +|+..++      .+++++|+++|+++ +..|..|. ||||+|+..+     ..+++++|++..+.+++.+|..|+||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9999886      57899999999998 88888999 9999998844     3568888887567899999999999999


Q ss_pred             HHHHhCcHHHHHHHHHhcCccccccccC
Q 029474          148 LCVKHNQLEALKFLVSIMNDRDFLNAKD  175 (193)
Q Consensus       148 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~d  175 (193)
                      +|+..++.+++++|.++..+   .+.++
T Consensus       160 ~A~~~~~~~~v~~L~~~~~~---~~~~~  184 (186)
T 3t8k_A          160 FVKRCQKPIALKMMEDYIKK---YNLKE  184 (186)
T ss_dssp             HHHTTTCHHHHHHHHHHHHH---HTCCC
T ss_pred             HHHHcCCHHHHHHHHHHHHH---Hhccc
Confidence            99999999999999987655   45444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=8.4e-31  Score=181.23  Aligned_cols=150  Identities=15%  Similarity=0.089  Sum_probs=107.2

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                      +..|.||||.|+..++.+.++.|++++... +. +..+.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            345899999999999999999999999876 33 577899999999999999999999999988 888999999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCc-hHHHHH--HhcCCccC
Q 029474          117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGM-SILHLA--VADKQIEV  193 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~-tpl~~A--~~~~~~ei  193 (193)
                      ..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++..+..|. ||||+|  +..|+.++
T Consensus        79 ~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~  154 (239)
T 1ycs_B           79 CAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQC  154 (239)
T ss_dssp             HHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             HcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHH
Confidence            9999999999998 4678999999999999999999999999999999999   888998887 999999  66777653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=2.4e-30  Score=172.20  Aligned_cols=146  Identities=14%  Similarity=0.085  Sum_probs=129.6

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCH----HHHHHHHhhCCCccccccCCCCcHHHHH
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYV----EIVKELLQVNPDMCLARDVDGRNPLHMA  115 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~l~~a  115 (193)
                      ++++|+.|++.|+.+.++.++..+...  ..+..|.||||+|+..++.    +++++|+++|+++ +..+..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            467999999999999999999877543  2237899999999999975    5899999999999 88899999999999


Q ss_pred             HHcCC------HHHHHHHHHhCCCccccccccCc-cHHhHHHHh-----CcHHHHHHHHH-hcCccccccccCCCCchHH
Q 029474          116 AMKGR------IQVLVDLFRARPFAAYATTIWSE-TVLHLCVKH-----NQLEALKFLVS-IMNDRDFLNAKDDYGMSIL  182 (193)
Q Consensus       116 ~~~~~------~~~~~~ll~~~~~~~~~~~~~g~-t~l~~a~~~-----~~~~~~~~Ll~-~g~~~~~~~~~d~~g~tpl  182 (193)
                      +..++      .+++++|++ .|.+++.+|..|+ ||||+|+..     +..+++++|++ +|++   ++.+|..|.|||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~TpL  158 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTAL  158 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCHH
T ss_pred             HHcCCcchhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCHH
Confidence            99887      578999998 6789999999999 999999984     35679999999 9999   999999999999


Q ss_pred             HHHHhcCCcc
Q 029474          183 HLAVADKQIE  192 (193)
Q Consensus       183 ~~A~~~~~~e  192 (193)
                      |+|++.++.+
T Consensus       159 ~~A~~~~~~~  168 (186)
T 3t8k_A          159 EFVKRCQKPI  168 (186)
T ss_dssp             HHHHTTTCHH
T ss_pred             HHHHHcCCHH
Confidence            9999998865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=1.1e-28  Score=154.25  Aligned_cols=126  Identities=36%  Similarity=0.532  Sum_probs=106.1

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 029474           39 HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK  118 (193)
Q Consensus        39 ~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~  118 (193)
                      +|.||||.|+..|+.+++++|++++... +.++..|.||||+|+..++.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            4778888888888888888888887765 566788888888888888888888888888877 67778888888888888


Q ss_pred             CCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          119 GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       119 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ++.+++++|++ .+.+++.++..|.|||++|+..++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            88888888887 5667888888888999999888899999999888864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=2.2e-32  Score=199.59  Aligned_cols=174  Identities=17%  Similarity=0.174  Sum_probs=135.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcc--ccccccCCCCHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVL--AGELDSRRSSPLHM   80 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~~~l~~   80 (193)
                      +++||||.|+..|+.+++++|++.++........+..|.||||+|+..|+.++|++|+++++..  .+..+.+ .||||+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            3569999999999999999999988632222233456788999999999999999999998631  0122222 899999


Q ss_pred             HHHcCCHHHHHHHHhhCCCcccc--ccCCCCcHHHHHH-HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLA--RDVDGRNPLHMAA-MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      |+..|+.+++++|+++|+++ +.  .+..|.||||+|+ ..|+.+++++|++ .+       ..|.|||++|+..|+.++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~g-------a~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CP-------VMLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SH-------HHHHHHHHCTTTTTTTTH
T ss_pred             HHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHh-CC-------CccchHHHHHHHCCCHHH
Confidence            99999999999999999886 44  6777899999999 9999999999997 33       137899999999999999


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       158 ~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++|+++|++   ++..+    ++++.|+.+|+.+|
T Consensus       241 v~lL~~~ga~---~~~~~----~~l~~A~~~g~~~v  269 (376)
T 2aja_A          241 NPFIARHVNR---LKEMH----DAFKLSNPDGVFDL  269 (376)
T ss_dssp             HHHHHHHHHH---HHHHH----TTTTTTSSSSCCCC
T ss_pred             HHHHHhcCcc---ccccc----HHHHHHHHCCChhh
Confidence            9999999887   54443    36777777777663

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=1.9e-28  Score=155.36  Aligned_cols=126  Identities=23%  Similarity=0.303  Sum_probs=97.2

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                      ...+.||||.|+..|+.+++++|++++... +.++..|.||||+|+..++.+++++|++++.++ +..+..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            344677888888888888888888877665 566777888888888888888888888887776 667777888888888


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhc
Q 029474          117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM  165 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  165 (193)
                      ..++.+++++|++ .+.+++..|..|+||||+|+..++.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8888888888887 45677777788888888888888888888887754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=3e-29  Score=162.69  Aligned_cols=141  Identities=21%  Similarity=0.211  Sum_probs=114.7

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCC-HHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSS-PLHM   80 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~l~~   80 (193)
                      +.+.|||++|+..|+.+++++|++.+.   +++..+..|.||||+|+ .|+.+++++|++++..+ +.++..|.| |||+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGA---NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTC---CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            467899999999999999999999986   45567889999999995 89999999999998876 778999999 9999


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHH
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLC  149 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  149 (193)
                      |+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|++ .+.+++.++..|.||.+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            99999999999999999998 8889999999999999999999999998 6789999999999988754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=1.2e-27  Score=151.63  Aligned_cols=123  Identities=24%  Similarity=0.317  Sum_probs=114.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      .+.+||++|+..|+.++++.|++.+.+   ++..|..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA   88 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            578999999999999999999999874   4567889999999999999999999999998876 677999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA  130 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  130 (193)
                      ..++.+++++|+++|.++ +..+..|.|||++|+..++.+++++|++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999998 78899999999999999999999999873

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1e-28  Score=156.60  Aligned_cols=121  Identities=24%  Similarity=0.256  Sum_probs=113.2

Q ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccccc-CccH
Q 029474           67 AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIW-SETV  145 (193)
Q Consensus        67 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-g~t~  145 (193)
                      .+.++..|.||||+|+..|+.+++++|++++.++ +..+..|+||||+|+. ++.+++++|++ .+.+++..+.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCH
Confidence            3667899999999999999999999999999988 7889999999999999 99999999998 56788899999 9999


Q ss_pred             HhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          146 LHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       146 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..++.++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~  126 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDI  126 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999998   89999999999999999998763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.95  E-value=1.1e-27  Score=166.08  Aligned_cols=140  Identities=21%  Similarity=0.196  Sum_probs=125.4

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccc-cCCCCHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD-SRRSSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~~l~~a   81 (193)
                      ++.||||.|+..|+.++++.|++ +.   +++..|..|.||||+|+..|+.++|++|++++..+ +.++ ..|.||||+|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TC---CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CC---CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            67899999999999999999999 65   55667899999999999999999999999999887 4555 8899999999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      +..|+.+++++|+++|.++ +..+..|.||||+|+..++                  ...+.|||++|+..|+.+++++|
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            9999999999999999998 8899999999999985321                  14578999999999999999999


Q ss_pred             HHhcC
Q 029474          162 VSIMN  166 (193)
Q Consensus       162 l~~g~  166 (193)
                      ++++.
T Consensus       180 ~~~~~  184 (244)
T 3ui2_A          180 EGQVF  184 (244)
T ss_dssp             HHHHE
T ss_pred             HHhcc
Confidence            99754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=170.07  Aligned_cols=141  Identities=18%  Similarity=0.123  Sum_probs=121.8

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccc-----cccCCCCHHHHHHHc---CCHHHHHHHHhhCCCccccccCCCCcH
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGE-----LDSRRSSPLHMAAQK---GYVEIVKELLQVNPDMCLARDVDGRNP  111 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~  111 (193)
                      ..++|+.|+..|+.+.++.|+..+..+...     .+..|.||||+|+..   ++.+++++|+++|.++ +..+..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence            346799999999999999999998876332     588899999999997   8999999999999998 8889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          112 LHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       112 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      ||+|+..|+.+++++|++ .+.+++.+|..|+|||++|+..++.+++++|+++|++         .|.||||+|+.+|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcCCc
Confidence            999999999999999998 6789999999999999999999999999999998875         489999999998863

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=1.9e-27  Score=158.06  Aligned_cols=138  Identities=21%  Similarity=0.195  Sum_probs=122.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccc-cCCCCHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELD-SRRSSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~~l~~a   81 (193)
                      ++.||||.|+..|+.+.++.|++ +.   +++..|..|.||||+|+..|+.+++++|++++..+ +.++ ..|.||||+|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~---~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TS---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            67899999999999999999999 64   55667899999999999999999999999999887 4555 8899999999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      +..|+.+++++|+++|.++ +..+..|.||||+|+..++.                  ..+.++|++|+..|..+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999999998 78899999999999864321                  3467999999999999999999


Q ss_pred             HHh
Q 029474          162 VSI  164 (193)
Q Consensus       162 l~~  164 (193)
                      .++
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=7.7e-27  Score=145.79  Aligned_cols=124  Identities=35%  Similarity=0.517  Sum_probs=114.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.|||+.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..++.+++++|++++..+ +.++..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence            478999999999999999999999864   4557889999999999999999999999998876 677899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR  131 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  131 (193)
                      ..++.+++++|+++|.++ +..+..|.||+++|+..++.+++++|++.+
T Consensus        77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999999998 788999999999999999999999999854

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=4.4e-29  Score=182.24  Aligned_cols=166  Identities=13%  Similarity=0.095  Sum_probs=133.2

Q ss_pred             HHHHHHHH-hCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccc--cccccCCCCHHHHHH
Q 029474            6 SLLYEASV-EGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA--GELDSRRSSPLHMAA   82 (193)
Q Consensus         6 ~~L~~A~~-~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~~~~~l~~a~   82 (193)
                      ++++.|.. .++.+.++.+++.+.          ++.||||+|++.|+.++|++|++++....  ...+..|.||||+|+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~----------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGI----------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTC----------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCC----------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            45666665 467777777777664          23599999999999999999999886221  123456778999999


Q ss_pred             HcCCHHHHHHHHhhCCCcc--ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccc--ccccCccHHhHHH-HhCcHHH
Q 029474           83 QKGYVEIVKELLQVNPDMC--LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYA--TTIWSETVLHLCV-KHNQLEA  157 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~  157 (193)
                      ..|+.+++++|+++|++..  +..... .||||+|+..|+.+++++|++ .+.++..  .+..|.||||+|+ ..|+.++
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~-~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ei  214 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNV  214 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH-cCCccchhccCCCCCCHHHHHHHHCCCHHH
Confidence            9999999999999997520  222223 899999999999999999998 5667666  8888999999999 9999999


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       158 ~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++|+++|+.          |.||||+|+.+|+.||
T Consensus       215 v~~Ll~~ga~----------~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          215 INFLLDCPVM----------LAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHHTTSHHH----------HHHHHHCTTTTTTTTH
T ss_pred             HHHHHhCCCc----------cchHHHHHHHCCCHHH
Confidence            9999997643          8999999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=1.1e-27  Score=152.00  Aligned_cols=128  Identities=23%  Similarity=0.265  Sum_probs=108.5

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      .+|..|.||||+|+..|+.+++++|++.+... +.++..|.||||+|+..++.+++++|++++.++ +..+..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            46788999999999999999999999988776 677888999999999999999999999998887 7788888999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhc
Q 029474          115 AAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM  165 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  165 (193)
                      |+..++.+++++|++ .+.+++.+|..|.||+++|+..+..+++++|.+.+
T Consensus        83 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999997 56788888999999999998888888887776644

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=7.5e-28  Score=152.78  Aligned_cols=118  Identities=25%  Similarity=0.324  Sum_probs=110.4

Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhH
Q 029474           69 ELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHL  148 (193)
Q Consensus        69 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  148 (193)
                      .++..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHH
Confidence            45889999999999999999999999999988 7889999999999999999999999998 677899999999999999


Q ss_pred             HHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          149 CVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       149 a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      |+..++.+++++|+++|++   ++.+|..|.||+|+|+..+..
T Consensus        83 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~  122 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMK  122 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHH
Confidence            9999999999999999998   899999999999999876543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=3.7e-27  Score=146.91  Aligned_cols=107  Identities=23%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC
Q 029474           74 RSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN  153 (193)
Q Consensus        74 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  153 (193)
                      |.+|||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++ .+.+++..|..|+||||+|+..+
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcC
Confidence            344444444444444444444444443 3344444444444444444444444443 33344444445555555555555


Q ss_pred             cHHHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          154 QLEALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       154 ~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                      +.+++++|+++|++   ++.+|..|.||||+|
T Consensus        85 ~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 HVSCVKLLLSKGAD---KTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CHHHHHHHHHTTCC---TTCCCTTSCCHHHHC
T ss_pred             CHHHHHHHHHcCCC---CCCcCCCCCCHHHHh
Confidence            55555555555544   445555555555554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=2e-26  Score=164.13  Aligned_cols=142  Identities=18%  Similarity=0.115  Sum_probs=119.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhh---ccCCCCCcHHHHHHHc---CChHHHHHHHhcCCccccccccCCCCHH
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKV---VTNRHHETPLHVAALR---GHLDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~---~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      .++|+.|+..|+++.++.|++.+.++....   ..+..|.||||+|+..   |+.+++++|++++..+ +.++..|.|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHH
Confidence            468999999999999999999987542210   0478899999999997   8999999999999876 77899999999


Q ss_pred             HHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcH
Q 029474           79 HMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQL  155 (193)
Q Consensus        79 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (193)
                      |+|+..|+.+++++|+++|+++ +..|..|.|||++|+..++.+++++|++.+. +      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA-G------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-H------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C------CCCChhHHHHhcCCc
Confidence            9999999999999999999998 8899999999999999999999999998542 2      588999999988753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=4.5e-27  Score=160.77  Aligned_cols=134  Identities=25%  Similarity=0.263  Sum_probs=112.1

Q ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhh-CCCccccccCCCCcHHHH
Q 029474           36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV-NPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        36 ~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~  114 (193)
                      .+..|.||||+|+..|+.+++++|++.+... +.++..|.||||+|+..|+.+++++|++. +.++ +..+..|.||||+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~  146 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA  146 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence            3556789999999999999999999998776 67799999999999999999999999998 8887 8889999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCcccccc
Q 029474          115 AAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLN  172 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  172 (193)
                      |+..|+.+++++|++. +.+++.++..|+|||++|+..+..++++.|++.|+.....+
T Consensus       147 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999984 77899999999999999999999999999999998844333

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=3.2e-26  Score=142.62  Aligned_cols=110  Identities=22%  Similarity=0.194  Sum_probs=76.9

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH
Q 029474           38 RHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAM  117 (193)
Q Consensus        38 ~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~  117 (193)
                      ..|.||||+|+..|+.+++++|++.+... +.++..|.||||+|+..++.+++++|++.+.++ +..+..|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            44667777777777777777777766654 555667777777777777777777777777766 6666677777777777


Q ss_pred             cCCHHHHHHHHHhCCCccccccccCccHHhHHH
Q 029474          118 KGRIQVLVDLFRARPFAAYATTIWSETVLHLCV  150 (193)
Q Consensus       118 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  150 (193)
                      .++.+++++|++ .+.+++.++..|+||+++|.
T Consensus        83 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence            777777777776 45566777777777777774

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=2.7e-26  Score=159.01  Aligned_cols=131  Identities=21%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHHH
Q 029474           38 RHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD-VDGRNPLHMAA  116 (193)
Q Consensus        38 ~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~  116 (193)
                      ..|.||||.|+..|+.++++.|++ +..+ +.++..|.||||+|+..|+.+++++|+++|.++ +..+ ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            458899999999999999999999 6655 778999999999999999999999999999998 5555 88999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      ..|+.+++++|++ .+.+++..+..|+||||+|+..+                    ....+.|||++|+..|+.+
T Consensus       120 ~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~--------------------~~~~~~~~l~~a~~~g~~~  174 (244)
T 3ui2_A          120 GYVRPEVVEALVE-LGADIEVEDERGLTALELAREIL--------------------KTTPKGNPMQFGRRIGLEK  174 (244)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHH--------------------TTCCCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHH--------------------hccCCCCHHHHHHHcChHH
Confidence            9999999999998 57899999999999999998521                    2245899999999887654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.93  E-value=2.5e-25  Score=162.00  Aligned_cols=149  Identities=16%  Similarity=0.118  Sum_probs=115.6

Q ss_pred             CCCCcHHHHHHHc-CChHHHHHHHhcCCccccccc--cCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           38 RHHETPLHVAALR-GHLDFAKEILRRTPVLAGELD--SRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        38 ~~g~~~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      ..+.++||.|+.. |+.++++.|++++..+ +..+  ..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            3456799999999 9999999999999877 5556  78999999999999999999999999998 7889999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcC
Q 029474          115 AAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK  189 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~  189 (193)
                      |+..|+.+++++|++ .+.+++..|..|.||||+|+..++.+++++|++.+.........+..+.|+++++....
T Consensus       275 A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          275 ATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999998 57889999999999999999999999999999988665545567778889988776543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=6.3e-26  Score=155.08  Aligned_cols=130  Identities=22%  Similarity=0.256  Sum_probs=109.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhc-CCccccccccCCCCHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~l~~a   81 (193)
                      .+.||||.|+..|+.++++.|++.+.   +++..|..|.||||+|+..|+.+++++|++. +... +.++..|.||||+|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRV---GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA  147 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCC---CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence            46799999999999999999999986   4556788999999999999999999999998 5554 78899999999999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYAT  138 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  138 (193)
                      +..|+.+++++|+++|.++ +..+..|.|||++|+..++.++++.++.. +......
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~  202 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLS  202 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhcc
Confidence            9999999999999999998 88999999999999999999999999874 4344433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=9.9e-26  Score=149.75  Aligned_cols=132  Identities=20%  Similarity=0.127  Sum_probs=108.3

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHH
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD-VDGRNPLHMA  115 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a  115 (193)
                      +..|.||||.|+..|+.++++.|++ +..+ +.++..|.||||+|+..|+.+++++|+++|.++ +..+ ..|.||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            4467899999999999999999998 6554 677889999999999999999999999999888 5555 8899999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      +..|+.+++++|++ .+.+++.+|..|+||||+|+..++.                    ..+.+||++|+..|+.+
T Consensus       118 ~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~  173 (183)
T 3deo_A          118 AGYVRPEVVEALVE-LGADIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEK  173 (183)
T ss_dssp             HHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHH-cCCCCcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHH
Confidence            99999999999998 4678888899999999999763221                    34678888888776544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=5.5e-24  Score=154.92  Aligned_cols=144  Identities=25%  Similarity=0.275  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHh-CCHHHHHHHHhcCcchhhhhccC--CCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHH
Q 029474            4 MESLLYEASVE-GNITTLLQLLEQDPLILDKVVTN--RHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus         4 ~~~~L~~A~~~-g~~~~~~~ll~~~~~~~~~~~~~--~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      ..++|+.|+.. |+++.++.|++.+.++   +..+  ..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv---n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~  274 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADV---NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHH  274 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCT---TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCC---CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            45799999999 9999999999999754   4445  78999999999999999999999999887 6789999999999


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC--CccccccccCccHHhHHHHh
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP--FAAYATTIWSETVLHLCVKH  152 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~g~t~l~~a~~~  152 (193)
                      |+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|+..+.  ......+..+.|+++.+...
T Consensus       275 A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999998 8899999999999999999999999997542  22334455677887776543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.5e-23  Score=147.72  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=115.5

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccc-----cccccCCCCHHHHHHHc---CCHHHHHHHHhhCCCccccccCCCCcHH
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLA-----GELDSRRSSPLHMAAQK---GYVEIVKELLQVNPDMCLARDVDGRNPL  112 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l  112 (193)
                      .++|+.|+..|+.+.++.++..+....     +..+..|.||||+|+..   ++.+++++|+++|.++ +..|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            368999999999999999999987642     33478899999999999   8999999999999998 88899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCcc
Q 029474          113 HMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDR  168 (193)
Q Consensus       113 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  168 (193)
                      |+|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       210 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998 77899999999999999999999999999999999863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=2.8e-23  Score=146.39  Aligned_cols=126  Identities=21%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhh---hhccCCCCCcHHHHHHHc---CChHHHHHHHhcCCccccccccCCCCHH
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILD---KVVTNRHHETPLHVAALR---GHLDFAKEILRRTPVLAGELDSRRSSPL   78 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~---~~~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~l   78 (193)
                      -++|+.|+..|+++.++.+++.+.+...   .+..+..|.||||+|+..   |+.+++++|++++..+ +.+|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            4689999999999999999999986532   234577899999999999   8999999999999887 77899999999


Q ss_pred             HHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 029474           79 HMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP  132 (193)
Q Consensus        79 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  132 (193)
                      |+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999998 8899999999999999999999999998654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.4e-23  Score=124.27  Aligned_cols=91  Identities=36%  Similarity=0.553  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhC
Q 029474           74 RSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN  153 (193)
Q Consensus        74 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  153 (193)
                      |.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++ .+.+++.+|..|+||||+|+..+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcC
Confidence            455666666666666666666655555 4555556666666666666666666655 34455555666666666666666


Q ss_pred             cHHHHHHHHHhcC
Q 029474          154 QLEALKFLVSIMN  166 (193)
Q Consensus       154 ~~~~~~~Ll~~g~  166 (193)
                      +.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            6666666666554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=7.6e-24  Score=130.26  Aligned_cols=108  Identities=31%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHH
Q 029474           70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLC  149 (193)
Q Consensus        70 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  149 (193)
                      +|..|.||||+|+..++.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence            4666777777777777777777777777766 5666777777777777777777777776 4566777777778888888


Q ss_pred             HHhCcHHHHHHHHHhcCccccccccCCCCchHH
Q 029474          150 VKHNQLEALKFLVSIMNDRDFLNAKDDYGMSIL  182 (193)
Q Consensus       150 ~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl  182 (193)
                      +..++.+++++|+++|++   ++.++..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGAD---VNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSS---HHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCC---CCcCCccccccc
Confidence            888888888888887777   777777777764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=5.6e-23  Score=121.65  Aligned_cols=88  Identities=41%  Similarity=0.660  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC
Q 029474           40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG  119 (193)
Q Consensus        40 g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~  119 (193)
                      |.||||+|+..|+.+++++|++++..+ +.++..|.||||+|+..++.+++++|+++|.++ +..+..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            445555555555555555555554443 344455555555555555555555555555544 444455555555555555


Q ss_pred             CHHHHHHHHH
Q 029474          120 RIQVLVDLFR  129 (193)
Q Consensus       120 ~~~~~~~ll~  129 (193)
                      +.+++++|++
T Consensus        80 ~~~~~~~Ll~   89 (93)
T 1n0q_A           80 HLEVVKLLLE   89 (93)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=5.3e-23  Score=126.47  Aligned_cols=109  Identities=31%  Similarity=0.391  Sum_probs=95.5

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      ++|..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+..++.+++++|+++|.++ +..+..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            46888999999999999999999999998776 677889999999999999999999999999988 7788899999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccccCccHH
Q 029474          115 AAMKGRIQVLVDLFRARPFAAYATTIWSETVL  146 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l  146 (193)
                      |+..++.+++++|++ .+.+++..+..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            999999999999997 6778888888888773

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=5.8e-20  Score=111.91  Aligned_cols=90  Identities=27%  Similarity=0.347  Sum_probs=54.1

Q ss_pred             cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 029474           36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA  115 (193)
Q Consensus        36 ~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a  115 (193)
                      .+.+|.|+||+|+..|+.+++++|++++... +.++..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            3455666666666666666666666665544 445566666666666666666666666666655 55555666666666


Q ss_pred             HHcCCHHHHHHH
Q 029474          116 AMKGRIQVLVDL  127 (193)
Q Consensus       116 ~~~~~~~~~~~l  127 (193)
                      +..++.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            666666665543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=1e-19  Score=110.83  Aligned_cols=92  Identities=24%  Similarity=0.372  Sum_probs=71.5

Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHh
Q 029474           68 GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLH  147 (193)
Q Consensus        68 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~  147 (193)
                      ...+.+|.|+||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++ .+.+++.++..|+||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHH
Confidence            344677788888888888888888888888777 6677788888888888888888888887 46677778888888888


Q ss_pred             HHHHhCcHHHHHHH
Q 029474          148 LCVKHNQLEALKFL  161 (193)
Q Consensus       148 ~a~~~~~~~~~~~L  161 (193)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888888766

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=89.96  E-value=0.24  Score=22.77  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=15.5

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHh
Q 029474            2 ERMESLLYEASVEGNITTLLQLLE   25 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~   25 (193)
                      +.++--+..||..|+++.++.|-.
T Consensus        11 ~aiEQqiyvA~seGd~etv~~Le~   34 (40)
T 1gp8_A           11 DAIRKQMDAAASKGDVETYRKLKA   34 (40)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Confidence            345556677777777777766643

>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X

Probab=83.87  E-value=2.7  Score=30.30  Aligned_cols=83  Identities=11%  Similarity=-0.006  Sum_probs=43.9

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhc--CCccccccccCCCCHHHHHHHc
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRR--TPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      .|......++.+..+.+++.-.........|..|...+......++.+....+++.  +....-..+..|...+..+...
T Consensus        40 ~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~  119 (351)
T 3gvo_A           40 FIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALES  119 (351)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHh
Confidence            34445555666655555554322222335677788888888887777665555543  1111112345555555555555


Q ss_pred             CCHHH
Q 029474           85 GYVEI   89 (193)
Q Consensus        85 ~~~~~   89 (193)
                      ...+-
T Consensus       120 ~~~~~  124 (351)
T 3gvo_A          120 ISSDQ  124 (351)
T ss_dssp             SCHHH
T ss_pred             CCHHH
Confidence            44433

>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A

Probab=83.06  E-value=4.4  Score=29.40  Aligned_cols=85  Identities=4%  Similarity=-0.137  Sum_probs=47.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcC--CccccccccCCCCHHHHHH
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~~l~~a~   82 (193)
                      .-.+..+...++.+....+++.-.........|..|...+......+..+....+++.-  ....-..+..|...+..+.
T Consensus        43 sR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~l  122 (369)
T 3k49_A           43 SRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKAL  122 (369)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHH
T ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHH
Confidence            34455566666666666666553222233357888888888888888876655555431  1111122445555555555


Q ss_pred             HcCCHHH
Q 029474           83 QKGYVEI   89 (193)
Q Consensus        83 ~~~~~~~   89 (193)
                      .....+-
T Consensus       123 e~~~~~q  129 (369)
T 3k49_A          123 EYIDSNQ  129 (369)
T ss_dssp             HHSCHHH
T ss_pred             HhCCHHH
Confidence            5444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 1e-18
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 37/184 (20%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
           TPLHVA+  GHL   K +L+R        + +  +PLHMAA+ G+ E+ K LLQ    + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY------------------------- 136
            A+  D + PLH AA  G   ++  L                                  
Sbjct: 61  -AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 137 -------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK 189
                    T    T LH+  K+ ++   + L+         NA    G++ LH+AV   
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVAVHHN 176

Query: 190 QIEV 193
            +++
Sbjct: 177 NLDI 180

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 8e-15
 Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 40/221 (18%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
           E+ L+ A+  G+      LL+            +  +TPLH AA  GH +  K +L    
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQNKA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 65  --------------------------------VLAGELDSRRSSPLHMAAQKGYVEIVKE 92
                                                +  +  +PLH+AA+ G V + + 
Sbjct: 91  NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 150

Query: 93  LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
           LL+ +     A   +G  PLH+A     + + V L   R  + ++      T LH+  K 
Sbjct: 151 LLERDAHPN-AAGKNGLTPLHVAVHHNNLDI-VKLLLPRGGSPHSPAWNGYTPLHIAAKQ 208

Query: 153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           NQ+E  + L+         NA+   G++ LHLA  +   E+
Sbjct: 209 NQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQEGHAEM 246

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 9e-15
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           +    TPLH+AA  GH +    +L +        +    +PLH+ AQ+G+V +   L++ 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKH 286

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE 156
              +  A    G  PLH+A+  G I++ V           A T    + LH   +    +
Sbjct: 287 GVMVD-ATTRMGYTPLHVASHYGNIKL-VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            +  L+         N     G + L +A     I V
Sbjct: 345 IVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISV 378

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 7e-13
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
           + N+   TPLH+ A  GH+  A  +++   ++        + PLH+A+  G +++VK  L
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT-PLHVASHYGNIKLVK-FL 316

Query: 95  QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ 154
             +     A+   G +PLH AA +G   + V L      +    +    T L +  +   
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDI-VTLLLKNGASPNEVSSDGTTPLAIAKRLGY 375

Query: 155 LEALKFLVSIMNDRDFLNAKDDYGMSI 181
           +     L  + ++  F+   D + MS 
Sbjct: 376 ISVTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 1e-12
 Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 36/216 (16%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+ A+  G +     LLE+D          ++  TPLHVA    +LD  K +L       
Sbjct: 136 LHVAAKYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNLDIVK-LLLPRGGSP 191

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
                   +PLH+AA++  VE+ + LLQ       A  V G  PLH+AA +G  ++ V L
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEM-VAL 249

Query: 128 FRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS------------------------ 163
             ++            T LHL  +   +     L+                         
Sbjct: 250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 309

Query: 164 ------IMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                 ++  +  +NAK   G S LH A      ++
Sbjct: 310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 4e-11
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           + L+  + EG++     L++          T R   TPLHVA+  G++   K +L+    
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGV---MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 322

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLV 125
                     SPLH AAQ+G+ +IV  LL+           DG  PL +A   G I V  
Sbjct: 323 -VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKRLGYISV-T 379

Query: 126 DLFRA 130
           D+ + 
Sbjct: 380 DVLKV 384

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 3e-16
 Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 39/211 (18%)

Query: 7   LLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDF----------- 55
           ++   +  G +  L + +  D  +  +  T++   T LH A   GH +            
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATR--TDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 56  ---------------------AKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
                                  + L         ++    +PLH AA K   EI   LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 95  QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ 154
           +   +   A+D      +H AA KG ++++  L   +            T LHL     +
Sbjct: 124 EGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEER 181

Query: 155 LEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
           +E  K LVS       +  ++    + L +A
Sbjct: 182 VEEAKLLVSQGAS---IYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 78  LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYA 137
           +   A  G +E +KE +  +  +    D D R  LH A   G  ++ V+           
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEI-VEFLLQLGVPVND 65

Query: 138 TTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                 + LH+     + E +K L+        +NA +  G + LH A +  + E+
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEI 118

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.4 bits (153), Expect = 9e-13
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 14/201 (6%)

Query: 2   ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHH------ETPLHVAALRGHLDF 55
           E +   L        +  LL L         K + +  H      E    VAA+ G    
Sbjct: 46  EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 105

Query: 56  AK--EILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA-RDVDGRNPL 112
                +L  +  +   + +       +AA+ G++ ++  L ++ P   +A    +  +  
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

Query: 113 HMAAMKGRIQVLVDLFRARPFAA--YATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF 170
            +AA  G + VL  L    P  A                V       + FL+        
Sbjct: 166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--- 222

Query: 171 LNAKDDYGMSILHLAVADKQI 191
           L   + +        V     
Sbjct: 223 LAYAEIHEFEYGEKYVNPFIA 243

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 6e-11
 Identities = 22/178 (12%), Positives = 46/178 (25%), Gaps = 15/178 (8%)

Query: 30  ILDKVVTNRHHETPLHVAALRGHLDFAK-------EILRRTPVLAGELDSR---RSSPLH 79
            L  +  +      + +   +      +          R    L  +   +         
Sbjct: 36  ELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF 95

Query: 80  MAAQKGY---VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP-FAA 135
           +AA  G    ++ +  LL  +  +      +      +AA  G + VL  L    P    
Sbjct: 96  VAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 136 YATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                 +     L  ++  L  L  L  +         + +   +    AV      V
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 212

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 24  LEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ 83
              +P I   V   +       ++   G  D    ++ ++  L G    R    L     
Sbjct: 236 KYVNPFIARHVNRLKEMHDAFKLSNPDGVFD----LVTKSECLQGFYMLR---NLIRRND 288

Query: 84  KGYVEIVKELLQVNPDMCLA----RDVDGRNPLHMAAMKGRIQV 123
           +  ++ ++ LL +     LA       D    L +A   G    
Sbjct: 289 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 332

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRT 63
           M      ++ +G    + +          + +   +    L        LD  + +L   
Sbjct: 252 MHDAFKLSNPDGVFDLVTK---------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302

Query: 64  PVL----AGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
            +        +    +  L +A + G       LL +
Sbjct: 303 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 13/132 (9%), Positives = 27/132 (20%), Gaps = 16/132 (12%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
                         G       I R                  ++   G  ++V +   +
Sbjct: 220 PVMLAYAEIHEFEYGEKYVNPFIARH-----VNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPF----AAYATTIWSETVLHLCVKH 152
                          L     +  +  +  L                  +  +L L ++ 
Sbjct: 275 Q-------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 153 NQLEALKFLVSI 164
               A   L+SI
Sbjct: 328 GNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 14/159 (8%), Positives = 39/159 (24%), Gaps = 24/159 (15%)

Query: 35  VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
           + N  ++  L +       +  +  +    +    L  + +  + +   K   ++ + L 
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 95  QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ 154
                          +  H   +K                        E +  +      
Sbjct: 67  LYYAHYN-RNAKQLWSDAHKKGIKS-----------------------EVICFVAAITGC 102

Query: 155 LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
             AL  L  ++   + +            LA  +  + V
Sbjct: 103 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 141

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 8   LYEASVEGNITTLLQLLEQ--DPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           L   + E  +  +  LL       +             L +A   G+      +L    V
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 342

Query: 66  LA 67
           LA
Sbjct: 343 LA 344

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 6e-12
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVK 91
            K        T LH AA   ++   K ++        + D    +P+ +AAQ+G +E+V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 92  ELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR 131
            L+Q    +  A D        +A       ++    R R
Sbjct: 239 YLIQQGASVE-AVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 9/153 (5%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
           E+P+ +           E + R  V   +    R+  LH  A     E  ++L+      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRT-VLHWIASNSSAEKSEDLIVHEAKE 59

Query: 101 CLA-------RDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN 153
           C+A        D D   PL +A +  R +++  L +A              + H    + 
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAANR 118

Query: 154 QLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
               + ++++    +  +   D  GM+ L +  
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
           +    GR  LH AA    + ++  L   +           +T + L  +  ++E + +L+
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                   + A D    +   LA A+    +
Sbjct: 242 QQGAS---VEAVDATDHTARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 9e-07
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 71  DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
             +  + LH AAQ   + IVK L+         +D DG+ P+ +AA +GRI+V V     
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV-VMYLIQ 242

Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
           +  +  A      T   L   +N    +   
Sbjct: 243 QGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 7e-12
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 6/142 (4%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDS---RRSSPLHMAAQKGYVEIVKEL 93
            +   T L  AA +GH++  K +L          D+          +++    VE +  L
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 94  LQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN 153
           L  +      R   G+ PL +A  K  + ++  L          T    +T L L V+  
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 154 QLEALKFLVSIMNDRDFLNAKD 175
             +  + L          +  D
Sbjct: 265 LKKIAELLCKRGAS---TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 9e-12
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 14/169 (8%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTP---------VLAGELDSRRSSPLHMAAQKGYV 87
           + +  T    AA+ G +   K + +R                L    ++ L  AA+KG+V
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 88  EIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR---ARPFAAYATTIWSET 144
           E++K LL        A D  GRN L  A +      +  +                  +T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 145 VLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            L L V+   L  ++ L+    +   +N  D  G + L LAV  K  ++
Sbjct: 222 PLILAVEKKHLGLVQRLLE--QEHIEINDTDSDGKTALLLAVELKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 46/234 (19%), Positives = 72/234 (30%), Gaps = 50/234 (21%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
             LL +A    ++  + QLLE    +           TPLH A      D  + +LR   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANV--NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 65  V--------------------------------LAGELDSRRSSPLHMAAQKGYVEIVKE 92
                                               E D    +    AA  G V+ +K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 93  LLQVNPD---------MCLARDVDGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTI 140
           L +   +                 G   L  AA KG ++V   L+D   A   A      
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 141 WSETVLHLCVKHNQLEAL-KFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            +     L    + +EA+   L+    D   +N + + G + L LAV  K + +
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGL 234

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 1/117 (0%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTN-RHHETPLHVAALRGHLDFAKEILRRTPVL 66
           L +A+ +G++  L  LL++    ++      R+      +++    ++    +L      
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 67  AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
                 R  +PL +A +K ++ +V+ LL+         D DG+  L +A      ++
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVK 91
           D  V     +TPL +A  + HL   + +L +  +   + DS   + L +A +    +I +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 92  ELLQ 95
            L +
Sbjct: 271 LLCK 274

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 17/201 (8%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
               S +  +  +        L L+  V   H  TPLH      +L+  K +++      
Sbjct: 76  QQHVSFDSLLQEVNDAFPNTQLNLNIPVDE-HGNTPLHWLTSIANLELVKHLVKH-GSNR 133

Query: 68  GELDSRRSSPLHMAAQKGY---VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
              D+   S L  A +          + LL       +  D   R  LH   +   +   
Sbjct: 134 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 193

Query: 125 VD------------LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLN 172
                         + + +     + T   E+  +      +   L+ L       + LN
Sbjct: 194 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 253

Query: 173 AKDDYGMSILHLAVADKQIEV 193
           A+D  G + L++A     I +
Sbjct: 254 AQDSNGDTCLNIAARLGNISI 274

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAG--ELDSRRSSPLHMAAQKGYVEI 89
                    E+  +           + +  +  +       DS   + L++AA+ G + I
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 90  VKELLQVNPDMCLARDVDGRNPLHMAA 116
           V  LL    D     +  G  P+   A
Sbjct: 275 VDALLDYGADPF-IANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 22/196 (11%), Positives = 58/196 (29%), Gaps = 23/196 (11%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L+  +   N+  +  L++      +++  +   E+ L  A    +   +         L 
Sbjct: 111 LHWLTSIANLELVKHLVKHGS---NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 68  GEL---DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL------------ARDVDGRNPL 112
             L   DS   + LH       +       +   D+ +            +   +  +  
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 227

Query: 113 HMAAMKGRIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF 170
           +    + +  +L +L      A    A     +T L++  +   +  +  L+    D   
Sbjct: 228 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD--- 284

Query: 171 LNAKDDYGMSILHLAV 186
               +  G+  +    
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 20/146 (13%), Positives = 43/146 (29%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
           E  L         +    +   +     E  S      H++      E+         ++
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
            +  D  G  PLH       ++++  L +      Y   +    ++      N  ++  F
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 161 LVSIMNDRDFLNAKDDYGMSILHLAV 186
              +      L  +D    +ILH  +
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHII 185

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 3e-10
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQ 122
           PLH A  +     V+ELL   P + L +D DGR PLH +      +
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 2e-09
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 40/221 (18%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA 67
           L++A +E     + +LL   P +L +   ++    PLH +      +    +L +   + 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 68  GELDSRRSSPLHMAAQKGYVEIVKE----------------------------------- 92
            +     S             +                                      
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 93  -LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVK 151
             L  N      +D   + PLH AA  G ++++  L      A         T L   + 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 152 HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE 192
               +A   LV         +  D+ G     +A+ ++  +
Sbjct: 182 EGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVALNEQVKK 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 4e-09
 Identities = 23/143 (16%), Positives = 40/143 (27%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
            PLH A +       +E+L   P L  + D     PLH +      EI   LL    ++ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
           L    D               + V                +   +         +  +  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 162 VSIMNDRDFLNAKDDYGMSILHL 184
             ++ +   +  KD +    LH 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHR 144

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 5e-07
 Identities = 16/91 (17%), Positives = 34/91 (37%)

Query: 36  TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
            ++ ++ PLH AA  G L   + +           D +  +PL  A  +G+ +    L++
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 193

Query: 96  VNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
                    D  G     +A  +   +  ++
Sbjct: 194 KYGAEYDLVDNKGAKAEDVALNEQVKKFFLN 224

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
           + G +     + LH+A    +   +  LL      +    ++  G+  LH+AA+ G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRD 169
            V+   A             T LHL  +         L+       
Sbjct: 61  -VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 35/235 (14%), Positives = 63/235 (26%), Gaps = 50/235 (21%)

Query: 5   ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTP 64
           ++ L+ A +  +   L  LL          + N   +T LH+AA+ G     +++     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL-YAAG 68

Query: 65  VLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC---------LARDVDGRNPLHMA 115
                 +    + LH+A +         LLQ  P             ++D         A
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 116 AMKGRIQVLVDL-------------------------------------FRARPFAAYAT 138
           A+  +     +                                        A        
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 139 TIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
                T LHL V+      L+ L+    D     A+   G + L  A+      +
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL 240

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
                TPLH+A         + +L+              +PL  A  +    + + L  
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 34  VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
           V   +   T LHVAA +G+ +  K +L +        D    +PLH AA  G  E  + L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 94  LQVNPDMCLARDVDGRNPLHMAA 116
           ++   DM  A +  G+    +A 
Sbjct: 252 VENLCDME-AVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 79  HMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYAT 138
               ++  +   ++ L       +     G   LH+AA KG  +VL  L +   +     
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIK 228

Query: 139 TIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD 188
                T LH      + EA + LV  + D   + A +  G +   +A  D
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 47  AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
              R  L  A++ L    +          + LH+AA KGY E++K L+Q   D+   +D 
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDY 230

Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
           DG  PLH AA  G+ +    +         A     +T   +  +    + L +L  +  
Sbjct: 231 DGWTPLHAAAHWGKEEA-CRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQK 285

Query: 167 DRDFLN 172
            ++ L+
Sbjct: 286 KQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.8 bits (99), Expect = 8e-06
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 74  RSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPF 133
             +    A   G  E V  LL+   D+    +VDG   LH A +   + ++  L      
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 134 AAYATTIWSETVLHLCVKHNQ 154
                      +         
Sbjct: 99  INQPDNEGWIPLHAAASCGYL 119

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 36/214 (16%), Positives = 62/214 (28%), Gaps = 34/214 (15%)

Query: 6   SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV 65
           ++   A   G+   +L+LLE+     D    N    T LH A +  ++D  K ++     
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGA---DINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 66  LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM----------- 114
           +    +                  + E L        A + +G  PL +           
Sbjct: 99  INQPDNEGWIPLHAA--ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 115 ---------------AAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK 159
                             +  ++       +             T LH+       E LK
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 160 FLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            L+    D   +N KD  G + LH A    + E 
Sbjct: 217 LLIQARYD---VNIKDYDGWTPLHAAAHWGKEEA 247

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-08
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVK 91
           D    +        + A+  +     ++L +            SS LH A+ +G + +V+
Sbjct: 135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 194

Query: 92  ELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
            L++   D    ++     PL +A  +  I +L
Sbjct: 195 TLVRSGADSS-LKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-06
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
            LH+A      E V+ LL+   D+       GR+PL  A     + + V L         
Sbjct: 113 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM-VQLLLQHGANVN 171

Query: 137 ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           A      + LH       L  ++ LV    D    + K+ +  + L +A + + I++
Sbjct: 172 AQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 3/156 (1%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGEL---DSRRSSPLHMAAQKGYVEIVKELLQVN 97
           +TPLH+A ++G+L     ++        EL   ++ R +PLH+A       +V+ L+   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 98  PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA 157
                               +    +   L  A P          + +  L V  N    
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
               + +    D        G S L  AV +  + +
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 159

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 4e-04
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVK 91
                + LH A+ RG L   + ++R     +   +    +PL +A  +  ++I++
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAK 57
           L+ AS  G +  +  L+       D  + N H++TPL VA  R  +D  +
Sbjct: 181 LHSASGRGLLPLVRTLVRSGA---DSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 107 DGRNPLHMAAMKGRIQV---LVDLFRARPFAAYATTIWSETVLHLCVKHNQ 154
           DG  PLH+A ++G +     LV+LF+             +T LHL V    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-07
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 44/194 (22%)

Query: 41  ETPLHVAALRGHLDFAKEILRRTPVLAGELDSR---RSSPLHMAAQKGYVEIV------- 90
           ++ LH+A +        E++R+       L+ +   + +PLH+A      EI        
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 91  -------------------------------KELLQVNPDMCLARDVDGRNPLHMAAMKG 119
                                                   +  A + +G   LH+A++ G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGM 179
            + ++  L                T LHL V     + +  L+    D    N     G 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV---NRVTYQGY 179

Query: 180 SILHLAVADKQIEV 193
           S   L        +
Sbjct: 180 SPYQLTWGRPSTRI 193

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
           N +  T LH+A++ G+L   + ++     +  +      + LH+A      ++V  LL+ 
Sbjct: 108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 167

Query: 97  NPDMCLARDVDGRNPLHMAAMKGRIQVL 124
             D+       G +P  +   +   ++ 
Sbjct: 168 GADVN-RVTYQGYSPYQLTWGRPSTRIQ 194

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-05
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 37  NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
             +  T LH+A    + D    +L+        +  +  SP  +   +    I ++L Q+
Sbjct: 142 PCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

Query: 97  NPD 99
             +
Sbjct: 201 TLE 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 36/190 (18%)

Query: 36  TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYV-------- 87
            ++  ET LH+AA     D AK +L        + ++ R+      A             
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 88  ------------------------EIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
                                   E + E L        A D  G+  LH AA     + 
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA 138

Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
            V++         A     ET L L  +    EA K L+    +       D        
Sbjct: 139 -VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN---REITDHMDRLPRD 194

Query: 184 LAVADKQIEV 193
           +A      ++
Sbjct: 195 VASERLHHDI 204

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 88  EIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLH 147
           +++ +LL    ++    D  G   LH+AA   R      L  A   A          +  
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 148 LCVKHNQ 154
                  
Sbjct: 63  AVAADAM 69

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 6e-05
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 32  DKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVK 91
           D    +   +T LH AA   + +    +           D +  +PL +AA++G  E  K
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASK 173

Query: 92  ELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
            LL    +     D   R P  +A+ +    ++
Sbjct: 174 ALLDNFANRE-ITDHMDRLPRDVASERLHHDIV 205

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 8/129 (6%)

Query: 8   LYEASVEGNITTLLQLLEQDPLILDKVVTNRHHE---TPLHVAAL---RGHLDFAKEILR 61
           L EA    +I  LLQ       + +K+     HE   T LH+A     R  L     +++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 62  RTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI 121
            +  L  +     ++  +         +               +  G  PL +A      
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLL--LRGKASIEIANESGETPLDIAKRLKHE 127

Query: 122 QVLVDLFRA 130
                L +A
Sbjct: 128 HCEELLTQA 136

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 5/111 (4%)

Query: 73  RRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP 132
           R    L  AA +G V+ V+ LL        A +  G+  L +         L  L +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 133 FAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
                T+  S                  L  ++     +N  D  G   +H
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLD-----TLKVLVEHGADVNVPDGTGALPIH 106

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 7e-04
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 7/152 (4%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             L  AA RG +   + +L R  V    L+    + L +         ++    +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE---LLKQGAS 60

Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
                         A +      + +                  +HL V+      + FL
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
            +  +    L+ +D  G++ L LA+     ++
Sbjct: 121 AAESD----LHRRDARGLTPLELALQRGAQDL 148

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 2e-04
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 75  SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA 134
           +  L  AA +G VE V+ LL+   +         R    M     R+  L+ L  A P  
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNC 63

Query: 135 AYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           A   T+                    LV +      L+ +D +G   + LA      +V
Sbjct: 64  ADPATLTRPVHDAAREGFLD-----TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 3/122 (2%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             L  AA RG ++  + +L      A            +         V ELL ++    
Sbjct: 5   DWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEP 61

Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
              D          A +      + +             W    + L  +    +  ++L
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 162 VS 163
            +
Sbjct: 122 RA 123

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 3e-04
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 30/147 (20%)

Query: 76  SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLV---------- 125
           + L  AA +G +E +  LLQ N ++  A++  GR  L +  +                  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 126 -------------------DLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
                               L     F A      +E  L L +   +         + +
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
               +  ++  G +   LA    + EV
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEV 148

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 7/152 (4%)

Query: 42  TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
             L  AA  G  D  + ++           +       +     Y       + +   + 
Sbjct: 4   KKLLEAARAGQDDEVRILMAN----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
                         A       +V++         A  +   T LH   +HN  E ++ L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
           +    D   ++ +  +  +   +++ +   ++
Sbjct: 120 IKYGAD---VHTQSKFCKTAFDISIDNGNEDL 148

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 4e-04
 Identities = 9/109 (8%), Positives = 28/109 (25%), Gaps = 5/109 (4%)

Query: 77  PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
               A + G ++ VK+ +    D+    +   +   + A                     
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-----LEFLLLKGA 59

Query: 137 ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
                 +  +   +       +  +  +++       K   G++ L   
Sbjct: 60  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-41  Score=233.49  Aligned_cols=188  Identities=22%  Similarity=0.159  Sum_probs=167.5

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      ++|.||||+||..|+.+++++|++.+++....+.+|..|.||||+|+..|+.+++++|++++..+ +.++..|.||||+|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLA   85 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhh
Confidence            57899999999999999999999998776667788999999999999999999999999999886 67899999999999


Q ss_pred             HHcCCHHHHHHHHhhCCCc----------------------------------------------cccccCCCCcHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDM----------------------------------------------CLARDVDGRNPLHMA  115 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~----------------------------------------------~~~~~~~~~~~l~~a  115 (193)
                      +..++.++++.|++.....                                              .+..+..|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            9999999999998643211                                              123466799999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +..++.+++++|++.+.......+..|.||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+.+++.+|
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad---in~~d~~g~t~L~~A~~~~~~~i  240 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL  240 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCHHH
Confidence            9999999999999976655656778899999999999999999999999998   89999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-38  Score=213.16  Aligned_cols=178  Identities=24%  Similarity=0.248  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      ++||||+|+..|+.+++++++..+...   ...+..+.++++.++..++.+++++|++++..+ +.++..|.||||+|+.
T Consensus        37 G~TpLh~Aa~~g~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          37 SRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHhhhhccccccccccccc---ccccccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHH
Confidence            344444444444444444444443321   112333344444444444455555555555443 5678889999999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .++.+++++|+++|.++ +..+..+.||||+++..++.+++++|.. .+.+++..|..|+||||+|+..|+.+++++|++
T Consensus       113 ~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         113 KNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhcc-ccceeeeccCCCCceeccccccCcHHHHHHHHH
Confidence            99999999999999988 7888999999999999999999998887 667899999999999999999999999999999


Q ss_pred             hcCccccccccCCCCchHHHHHHhcCCc
Q 029474          164 IMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       164 ~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      .|++   ++.+|.+|+||||+|. +|+.
T Consensus       191 ~Gad---~~~~d~~g~tpl~~A~-~~~~  214 (223)
T d1uoha_         191 QGAS---IYIENKEEKTPLQVAK-GGLG  214 (223)
T ss_dssp             TTCC---SCCCCTTSCCHHHHCC-TTHH
T ss_pred             CCCC---CCCCCCCCCCHHHHHH-CCCH
Confidence            9998   8999999999999984 4543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=201.94  Aligned_cols=182  Identities=27%  Similarity=0.350  Sum_probs=167.2

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      .++.|+.+|+.|+++.++.+++..+.  .++.+|..|+||||+|+..|+.+++++++...... ...+..+.++++.++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~--~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGG--GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCC--cCcCcCCCCCCHHHHHHHhhhhccccccccccccc-cccccccccccccccc
Confidence            35789999999999999999988764  45568999999999999999999999999998776 4557788999999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      .++.+++++|++++.++ +..+..|.||||+|+..++.+++++|++ .+.+++..+..|.||||+|+..++.+++++|.+
T Consensus        80 ~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            99999999999999988 7889999999999999999999999998 667899999999999999999999999999999


Q ss_pred             hcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          164 IMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       164 ~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+.+   ++.+|..|.||||+|+..|+.|+
T Consensus       158 ~~~~---i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         158 YKAS---TNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             TTCC---SCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccce---eeeccCCCCceeccccccCcHHH
Confidence            9988   89999999999999999998763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-36  Score=203.30  Aligned_cols=178  Identities=19%  Similarity=0.198  Sum_probs=146.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccc--ccccc----------
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA--GELDS----------   72 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~----------   72 (193)
                      ++|||+||..|+++.++.|++..+.  ..+.+|.+|.||||+|+..|+.+++++|++++..+.  ...+.          
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS--LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG--GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            4799999999999999999998764  445688999999999999999999999999876431  12233          


Q ss_pred             -------------------------CCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHH
Q 029474           73 -------------------------RRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL  127 (193)
Q Consensus        73 -------------------------~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  127 (193)
                                               .+.++++.++..++.++++.|++.+... ...+..|+||||+|+..|+.+++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccc
Confidence                                     3445555555566666666777776666 66788899999999999999999999


Q ss_pred             HHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH-hcCccccccccCCCCchHHHHHHhc
Q 029474          128 FRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS-IMNDRDFLNAKDDYGMSILHLAVAD  188 (193)
Q Consensus       128 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~d~~g~tpl~~A~~~  188 (193)
                      ++.++.+++..|.+|+||||+|+..|+.+++++|++ .|++   ++.+|.+|+||||+|+..
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad---~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---SCCCCTTSCCTGGGCSCH
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC---CCCcCCCCCCHHHHHhhH
Confidence            987777888899999999999999999999999996 5888   889999999999998753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.1e-36  Score=210.67  Aligned_cols=187  Identities=17%  Similarity=0.172  Sum_probs=160.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcch-----hhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLI-----LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~-----~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   77 (193)
                      .++||||+||..|+.++++.|+......     .+++.+|.+|.||||+|+..|+.++|++|+++|..+ +.++..|.||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~  110 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSA  110 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccc-cccccccccc
Confidence            4789999999999999998876543211     145678999999999999999999999999999886 7789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCC--------C--------------------------------------ccccccCCCCcH
Q 029474           78 LHMAAQKGYVEIVKELLQVNP--------D--------------------------------------MCLARDVDGRNP  111 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~--------~--------------------------------------~~~~~~~~~~~~  111 (193)
                      +++|+..++.+++..+.....        +                                      .....+..|.||
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            999999999888887765210        0                                      001234568999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          112 LHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       112 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      ||.++..++.+++++++...+.+...+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+++|+.
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad---in~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999988878889999999999999999999999999999999999   899999999999999999987


Q ss_pred             cC
Q 029474          192 EV  193 (193)
Q Consensus       192 ei  193 (193)
                      ||
T Consensus       268 ~i  269 (277)
T d2fo1e1         268 NI  269 (277)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.8e-35  Score=206.65  Aligned_cols=176  Identities=26%  Similarity=0.345  Sum_probs=157.2

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      +.|+|+.||..|+++.|+.|++.|+   +++..|.+|.||||+|+..|+.++|++|++++... ...+..+.+||++++.
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Ga---dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGA---DINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCC---CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCC---CCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccc
Confidence            4689999999999999999999997   45677999999999999999999999999998876 5668889999999999


Q ss_pred             cCCHHHHHHHHhhCCCcc-----------------------------------------------------------ccc
Q 029474           84 KGYVEIVKELLQVNPDMC-----------------------------------------------------------LAR  104 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~-----------------------------------------------------------~~~  104 (193)
                      .++.++++.|++++....                                                           ...
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            999999999998654320                                                           113


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHH
Q 029474          105 DVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL  184 (193)
Q Consensus       105 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~  184 (193)
                      +..|.||||.|+..|+.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad---v~~~d~~G~TaL~~  271 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAFDV  271 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTTTS
T ss_pred             cCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHH
Confidence            4568899999999999999999997 6678899999999999999999999999999999999   89999999999999


Q ss_pred             HHh
Q 029474          185 AVA  187 (193)
Q Consensus       185 A~~  187 (193)
                      |++
T Consensus       272 A~e  274 (291)
T d1s70b_         272 ADE  274 (291)
T ss_dssp             CCS
T ss_pred             HHH
Confidence            975

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-37  Score=208.26  Aligned_cols=186  Identities=22%  Similarity=0.233  Sum_probs=157.9

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCc-chhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDP-LILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~-~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a   81 (193)
                      +|+||||+|+..|+.+.+..+++... ...+++.+|..|.||||+|+..|+.+++++|++++..+ +.++..|.+||+++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccc
Confidence            57899999999999766665554321 12255678999999999999999999999999999887 77899999999999


Q ss_pred             HHcCCHHHHHHHHhhCCCc-----cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHH
Q 029474           82 AQKGYVEIVKELLQVNPDM-----CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLE  156 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (193)
                      +..+..++++.+++.+...     .......+.||++.|+..++.+++++++..+.......+.+|.||||+|+..|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            9999999999999875432     12344568999999999999999999998766555556678999999999999999


Q ss_pred             HHHHHHHhcCccccccccCCCCchHHHHHHhcCCcc
Q 029474          157 ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIE  192 (193)
Q Consensus       157 ~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~e  192 (193)
                      ++++|+++|++   ++.+|..|.||||+|+..++.+
T Consensus       160 ~v~~Ll~~gad---~~~~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         160 LVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             HHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHH
T ss_pred             HHHHHHhcCCc---ccccCCCCCCHHHHHHHCCCHH
Confidence            99999999998   8999999999999999988765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=194.67  Aligned_cols=184  Identities=20%  Similarity=0.237  Sum_probs=156.5

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHh----cCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCH
Q 029474            2 ERMESLLYEASVEGNITTLLQLLE----QDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSP   77 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   77 (193)
                      |+|+||||.||..|+.++++.|++    .+.   +++..|..|.||||+|+..|+.+++++|++++... +.....+.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~---~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR---ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCC---CCCccCCCCCccceehhcccccccccccccccccc-cccccccccc
Confidence            579999999999999999999986    343   45567899999999999999999999999998776 5667778888


Q ss_pred             HHHHHHcCCHHHHHHHHhh-------------------------------------CCCccccccCCCCcHHHHHHHcCC
Q 029474           78 LHMAAQKGYVEIVKELLQV-------------------------------------NPDMCLARDVDGRNPLHMAAMKGR  120 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~-------------------------------------~~~~~~~~~~~~~~~l~~a~~~~~  120 (193)
                      ++.|...+..++++.+...                                     ..+........+.++++.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            8888888777776665543                                     222222345578999999999999


Q ss_pred             HHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       121 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ..+++.+++ .+.....++..|.||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+++|+.||
T Consensus       157 ~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad---~n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         157 LSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             hhhhhhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCCCccc
Confidence            999999998 5678888999999999999999999999999999998   89999999999999999887764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-33  Score=194.22  Aligned_cols=161  Identities=22%  Similarity=0.195  Sum_probs=144.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc-----------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV-----------------   65 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~-----------------   65 (193)
                      .++||||+|+..|+.++++.|++.|+   +++..|.+|.||||+|+..++.+++++|++....                 
T Consensus        44 ~g~TpL~~A~~~g~~~iv~~Ll~~ga---~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (255)
T d1oy3d_          44 LGQTALHLAAILGEASTVEKLYAAGA---GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (255)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTC---CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCCccchHHhhcccccccccccccc---cccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhc
Confidence            46799999999999999999999997   4556789999999999999999999998764321                 


Q ss_pred             -----------------------------cccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 029474           66 -----------------------------LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA  116 (193)
Q Consensus        66 -----------------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~  116 (193)
                                                   ..+.++..|.||||+|+..++.+++++|++.+.+.....+..|.||||+|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~  200 (255)
T d1oy3d_         121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV  200 (255)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccc
Confidence                                         113457789999999999999999999999999886667889999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       117 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ..++.+++++|++ .+++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus       201 ~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         201 EAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999998 6789999999999999999999999999999999996

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=176.90  Aligned_cols=154  Identities=23%  Similarity=0.300  Sum_probs=143.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      ++||.||..|++++|+.|++.|+   +++.+|..|.||||+|+ .|+.+++++|++++..+ +.++..+.++++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~---d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV---NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC---CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC---CcCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            89999999999999999999997   45668999999999886 78999999999999886 677899999999999999


Q ss_pred             CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhc
Q 029474           86 YVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM  165 (193)
Q Consensus        86 ~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  165 (193)
                      ..+.+..+++.+.+. +..+..+.+|+++|+..++.+++++|++.++.+.+.+|..|+||||+|+..++.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999887 7788999999999999999999999999888889999999999999999999999999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.8e-32  Score=182.10  Aligned_cols=183  Identities=21%  Similarity=0.196  Sum_probs=154.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAA   82 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~   82 (193)
                      ++.||||+||..|+.+++++|+..++.   ++..+..+.++++.++..++.....................+.++.+.+.
T Consensus        22 ~G~t~L~~A~~~g~~e~v~~Ll~~g~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          22 TGETSLHLAARFARADAAKRLLDAGAD---ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhhccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567888888888888888888888763   34567777888888888887776666665555444455666778888888


Q ss_pred             HcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           83 QKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        83 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      ........+.|.+.+.+. +..+..|.|||+.++..+...+++.+++ .+.+++..|..|.||||+|+..|+.+++++|+
T Consensus        99 ~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecc-ccccccccccccccccchhccccHHHHHHHHH
Confidence            888888888999988887 7788999999999999999999999998 56688889999999999999999999999999


Q ss_pred             HhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          163 SIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       163 ~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++|++   ++.+|..|.||||+|+++|+.||
T Consensus       177 ~~gad---~n~~d~~g~Tpl~~A~~~~~~~i  204 (209)
T d1ot8a_         177 DNFAN---REITDHMDRLPRDVASERLHHDI  204 (209)
T ss_dssp             HTTCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HCCCC---CCCcCCCCCCHHHHHHHcCCHHH
Confidence            99998   88999999999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-32  Score=199.11  Aligned_cols=185  Identities=23%  Similarity=0.228  Sum_probs=161.1

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhh------------------------------hhccCCCCCcHHHHHHHcCC
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILD------------------------------KVVTNRHHETPLHVAALRGH   52 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~------------------------------~~~~~~~g~~~L~~A~~~~~   52 (193)
                      ++.+||+.|+..|++++++.|+..+++...                              ....+..+.|||+.|+..++
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            456799999999999999999988764311                              01234557788888888888


Q ss_pred             hHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 029474           53 LDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP  132 (193)
Q Consensus        53 ~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  132 (193)
                      .+++++++...... +..+..|.+|++.|+..++.+++++|+++|.++ +..+..+.|||+.++..++.++++++++ .+
T Consensus       244 ~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g  320 (408)
T d1n11a_         244 AEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQ-HQ  320 (408)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHH-TT
T ss_pred             HhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeecc-cc
Confidence            88888888876655 566888999999999999999999999999988 7778889999999999999999999998 67


Q ss_pred             CccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          133 FAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+++.+|..|+||||+|++.|+.+++++|+++|++   ++.+|.+|+||||+|+++|+.+|
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd---~n~~d~~G~t~L~~A~~~~~~~i  378 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISV  378 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCSSSCCHHHHHHHTTCHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHH
Confidence            78999999999999999999999999999999999   89999999999999999998763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=188.24  Aligned_cols=184  Identities=27%  Similarity=0.240  Sum_probs=136.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccc---------------
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLA---------------   67 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~---------------   67 (193)
                      +.+|+|+.|++.|++++|+.|++.|+++..  ..+..|.||||+|+..|+.+++++|++.+....               
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~--~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc--cCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhh
Confidence            468999999999999999999999985422  234569999999999999999999998654220               


Q ss_pred             -----------------c-------------------------------------------ccccCCCCHHHHHHHcCCH
Q 029474           68 -----------------G-------------------------------------------ELDSRRSSPLHMAAQKGYV   87 (193)
Q Consensus        68 -----------------~-------------------------------------------~~~~~~~~~l~~a~~~~~~   87 (193)
                                       .                                           .....|.||||+|+..|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence                             0                                           0022355666666666666


Q ss_pred             HHHHHHHhh-CCCccccccCCCCcHHHHHHHcC----CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHH
Q 029474           88 EIVKELLQV-NPDMCLARDVDGRNPLHMAAMKG----RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV  162 (193)
Q Consensus        88 ~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  162 (193)
                      +++++|+++ +.++ +..+..+.+++..+...+    ..+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+
T Consensus       162 ~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         162 EVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            666666654 3444 555555555555444332    2345666665 45667777889999999999999999999999


Q ss_pred             Hh-cCccccccccCCCCchHHHHHHhcCCccC
Q 029474          163 SI-MNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       163 ~~-g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      ++ |++   ++.+|.+|.||||+|+++|+.|+
T Consensus       240 ~~~g~d---in~~d~~G~TpL~~A~~~~~~ei  268 (285)
T d1wdya_         240 EQEHIE---INDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HSSSCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HcCCCC---CcCCCCCCCCHHHHHHHcCCHHH
Confidence            84 666   89999999999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.6e-31  Score=170.16  Aligned_cols=153  Identities=24%  Similarity=0.330  Sum_probs=137.4

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHc
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      .+.|+.||..|+++.|+.|++.+.  .+++..|..|+||||+|+. |+.+++++|++++..+ +..+..|.+|++.++..
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~--~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTC--CCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCC--CCCCccCCCCCcccccccc-cccccccccccccccc-ccccccccccccccccc
Confidence            345999999999999999998754  2556789999999999874 8899999999998876 67788999999999999


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHh
Q 029474           85 GYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSI  164 (193)
Q Consensus        85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  164 (193)
                      ++.++++++++++.++ +..+..|.||||+|+..|+.+++++|+.  +.+++.+|..|+||||+|+..|+.+++++|++|
T Consensus        79 ~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-ccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999988 7788999999999999999999998874  568888999999999999999999999999975

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.1e-31  Score=192.40  Aligned_cols=178  Identities=31%  Similarity=0.402  Sum_probs=158.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      ||||.||..|++++|+.|++.|+   +++..|..|.||||+|+..|+.+++++|+++|..+ +.++..|.||||+|+..|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~---~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGA---SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC---CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcC
Confidence            79999999999999999999997   45567899999999999999999999999999876 778999999999999999


Q ss_pred             CHHHHHHHHhhCCCc--------------------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 029474           86 YVEIVKELLQVNPDM--------------------------------CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPF  133 (193)
Q Consensus        86 ~~~~~~~ll~~~~~~--------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  133 (193)
                      +.+++++|+....+.                                ....+..+.++++.++..++.+++++|++ .+.
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~-~~~  156 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDA  156 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH-cCC
Confidence            999999998764432                                12245678899999999999999999998 667


Q ss_pred             ccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCc
Q 029474          134 AAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQI  191 (193)
Q Consensus       134 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~  191 (193)
                      +++..+..|.+||++|+..++.+++++|+++|++   ++..+..|.||+|+++...+.
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~~t~l~~~~~~~~~  211 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHIAAKQNQV  211 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC---SCCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc---ccccCCCCCCcchhhhccchh
Confidence            8888899999999999999999999999999988   788888999999988876654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.9e-30  Score=165.36  Aligned_cols=151  Identities=24%  Similarity=0.318  Sum_probs=123.0

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHH
Q 029474            4 MESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQ   83 (193)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~   83 (193)
                      ..|||+.|++.|+.++++.|++.++..    ..|..|.||||+|+..++.++++.++...... ...+..+.++++.++.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~----~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc----ccccCCCccccccccccccccccccccccccc-cccccccccccccccc
Confidence            458888888888888888888888643    24778888888888888888888888776655 4556777788888888


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHH
Q 029474           84 KGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL  161 (193)
Q Consensus        84 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  161 (193)
                      ..+.++++++..++.+. ...+..|.||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..|+.+++++|
T Consensus        77 ~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            88888888888888877 6778888888888888888888888887 5678888888888888888888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.1e-31  Score=168.91  Aligned_cols=146  Identities=25%  Similarity=0.344  Sum_probs=134.8

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR  120 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~  120 (193)
                      .|||+.|++.|+.++|++|+++++.. + .+..|.||||+|+..++.+++..++...... ......+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            48999999999999999999999865 3 5899999999999999999999999988777 6677788899999999999


Q ss_pred             HHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       121 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .+.+++++. .+.+...++..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+.+|+.||
T Consensus        80 ~~~~~~l~~-~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad---~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          80 ANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ceeeecccc-cCCccccccccCchHHHhhhhcchhheeeeccccccC---CcccCCCCCCHHHHHHHcCCHHH
Confidence            999999997 5668888999999999999999999999999999998   89999999999999999999874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.3e-31  Score=168.20  Aligned_cols=146  Identities=23%  Similarity=0.254  Sum_probs=135.1

Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCH
Q 029474           42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI  121 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  121 (193)
                      ++||.|+..|+.++|++|++++.++ +.+|..|.||||+|+ .++.+++++|++++.++ +..+..+.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            7999999999999999999999886 788999999999886 78999999999999998 78899999999999999999


Q ss_pred             HHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          122 QVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       122 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +.++.+++ .+...+..+..|.+|+++|+..++.+++++|+++++..  ++.+|..|.||||+|+..++.||
T Consensus        80 ~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_          80 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccc--ccccCCCCCCHHHHHHHcCCHHH
Confidence            99999998 56688888999999999999999999999999998732  78999999999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=167.41  Aligned_cols=146  Identities=25%  Similarity=0.321  Sum_probs=132.4

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR  120 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~  120 (193)
                      .+.|+.|+..|+.++|+.|++++....+.+|..|.||||+|+. ++.+++++|++++.++ +..+..+.+|++.++..++
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            3579999999999999999988665568889999999999874 8899999999999988 7788899999999999999


Q ss_pred             HHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       121 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      .++++++++ .+.+++..+..|+||||+|+..|+.+++++|+ .|++   ++.+|.+|+||||+|+..|+.||
T Consensus        81 ~~~~~~~l~-~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~~i  148 (156)
T d1bd8a_          81 LDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             ccccccccc-cccccccccCCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCHHH
Confidence            999999998 56788889999999999999999999999887 5777   89999999999999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-29  Score=171.39  Aligned_cols=161  Identities=16%  Similarity=0.076  Sum_probs=132.6

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCc-----------------------------------HHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHET-----------------------------------PLHVA   47 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~-----------------------------------~L~~A   47 (193)
                      ++.||||+|+..|+.+++++|++.++++......+..|.+                                   +++.+
T Consensus        33 ~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  112 (229)
T d1ixva_          33 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA  112 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6889999999999999999999998765333334444444                                   45555


Q ss_pred             HHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHH
Q 029474           48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDL  127 (193)
Q Consensus        48 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  127 (193)
                      +..++.++++.|++.+... ..++..|.||||+|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|
T Consensus       113 ~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~L  191 (229)
T d1ixva_         113 VGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL  191 (229)
T ss_dssp             HHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHH
Confidence            5555555555555555544 556889999999999999999999999998655588899999999999999999999999


Q ss_pred             HHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          128 FRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       128 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ++..|.+++.+|..|+||||+|+   +.+++++|++.|+|
T Consensus       192 l~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         192 VEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             HHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            98778899999999999999998   46899999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=170.27  Aligned_cols=161  Identities=19%  Similarity=0.193  Sum_probs=143.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc-----cccccccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV-----LAGELDSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~~~   77 (193)
                      .++||||+|+..|+.+++++|++.++   +++..|..|.+||+.|+..++.++++.|+..+..     ........|.||
T Consensus        38 ~g~TpLh~A~~~~~~~iv~~L~~~g~---d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~  114 (221)
T d1iknd_          38 LQQTPLHLAVITNQPEIAEALLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC  114 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSCCC---CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCH
T ss_pred             CCCccccccccccccccccccccccc---cccccccccccccccccccccccccchhhhhcccccccccccccccccchh
Confidence            57899999999999999999999997   4556789999999999999999999999987533     223345668999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHH
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      +|.|+..++.+++.+++..+.......+..|.||||.|+..|+.+++++|++ .+.+++.++..|+||||+|+..++.++
T Consensus       115 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         115 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             hhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHH
Confidence            9999999999999999999998855566789999999999999999999998 678999999999999999999999999


Q ss_pred             HHHHHHhcCc
Q 029474          158 LKFLVSIMND  167 (193)
Q Consensus       158 ~~~Ll~~g~~  167 (193)
                      +++|++.+.+
T Consensus       194 ~~~l~~~~~~  203 (221)
T d1iknd_         194 QQQLGQLTLE  203 (221)
T ss_dssp             HHHHHTTSCG
T ss_pred             HHHHHHcCCc
Confidence            9999998765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=1.8e-31  Score=191.87  Aligned_cols=186  Identities=17%  Similarity=0.185  Sum_probs=141.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHH---HHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCcccccc--ccCCCCH
Q 029474            3 RMESLLYEASVEGNITTLLQ---LLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGEL--DSRRSSP   77 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~---ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~~~   77 (193)
                      .+.|+|++|+..|+.+.++.   |++.++   +++.++..|+||||+|++.|+.++|++|++.++.. +..  +..|.||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~---~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~  164 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDE---IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHA  164 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCS---SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCC---cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCCh
Confidence            57899999999999887766   677776   44567888999999999999999999999998876 333  3468999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCcc--ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccc-----------------
Q 029474           78 LHMAAQKGYVEIVKELLQVNPDMC--LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYAT-----------------  138 (193)
Q Consensus        78 l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----------------  138 (193)
                      ||+|+..|+.+++++|++.++...  +..+..+.||++.|+..|+.+++++|++.+ .+....                 
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC-CCcchHHHHHHHcCcHhhhHHHH
Confidence            999999999999999999987642  223455678888899999999999998632 111100                 


Q ss_pred             --------------------------------cccCccHHhHHHHhCcHHHHHHHHHhcCcccc--ccccCCCCchHHHH
Q 029474          139 --------------------------------TIWSETVLHLCVKHNQLEALKFLVSIMNDRDF--LNAKDDYGMSILHL  184 (193)
Q Consensus       139 --------------------------------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~--~~~~d~~g~tpl~~  184 (193)
                                                      ...+.++++.++..+..+++++|++.+.....  .+..+.+|.||||+
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence                                            00123567777778899999999998765332  23455679999999


Q ss_pred             HHhcCCccC
Q 029474          185 AVADKQIEV  193 (193)
Q Consensus       185 A~~~~~~ei  193 (193)
                      |++.|+.|+
T Consensus       324 A~~~Gn~e~  332 (346)
T d2ajaa1         324 ALRLGNQGA  332 (346)
T ss_dssp             HHHHTCTTH
T ss_pred             HHHcCcHHH
Confidence            999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.6e-28  Score=171.46  Aligned_cols=176  Identities=22%  Similarity=0.228  Sum_probs=145.6

Q ss_pred             HhCCHHHHHHHHhcCcchhhhhc------cCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC
Q 029474           13 VEGNITTLLQLLEQDPLILDKVV------TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY   86 (193)
Q Consensus        13 ~~g~~~~~~~ll~~~~~~~~~~~------~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~   86 (193)
                      +....+.++.+.....+...+..      .+.++.|+|+.||..|+.++|++|+++|.++ +.+|.+|.||||+|+..|+
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCC
Confidence            34446777777776654422211      1233569999999999999999999999886 7789999999999999999


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC----------------------------------
Q 029474           87 VEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP----------------------------------  132 (193)
Q Consensus        87 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----------------------------------  132 (193)
                      .+++++|++++.+. ...+..+.+||+.++..++.+++++|++.+.                                  
T Consensus        86 ~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~  164 (291)
T d1s70b_          86 VDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (291)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             ceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccc
Confidence            99999999999887 6778889999999999999999999986321                                  


Q ss_pred             -------------------------CccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHHh
Q 029474          133 -------------------------FAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVA  187 (193)
Q Consensus       133 -------------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~  187 (193)
                                               ......+..|.||||.|+..|+.+++++|+++|++   ++.++..|.||||+|+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d---in~~~~~g~TpL~~A~~  241 (291)
T d1s70b_         165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAH  241 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec---ccccccCCCCHHHHHHH
Confidence                                     11122345678999999999999999999999998   89999999999999999


Q ss_pred             cCCccC
Q 029474          188 DKQIEV  193 (193)
Q Consensus       188 ~~~~ei  193 (193)
                      .|+.+|
T Consensus       242 ~g~~~i  247 (291)
T d1s70b_         242 WGKEEA  247 (291)
T ss_dssp             TTCHHH
T ss_pred             cCCHHH
Confidence            998764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.9e-30  Score=180.21  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=46.4

Q ss_pred             cccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCCCchHHHHHH
Q 029474          135 AYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV  186 (193)
Q Consensus       135 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~  186 (193)
                      ++.+|..|+||||+|++.|+.+++++|+++|++   ++.+|..|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd---~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHcC
Confidence            567789999999999999999999999999999   8999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.2e-27  Score=163.12  Aligned_cols=170  Identities=21%  Similarity=0.194  Sum_probs=145.9

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcch-------hhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCC
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLI-------LDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRS   75 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~-------~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   75 (193)
                      .+.++++.|+..|....+..++......       ......+..|.||||+|+++|+.+++++|+++.....+..+..+.
T Consensus       104 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~  183 (285)
T d1wdya_         104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  183 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred             CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCC
Confidence            3567899999999999999999875432       122244567999999999999999999999875544577788898


Q ss_pred             CHHHHHHHcC----CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHH
Q 029474           76 SPLHMAAQKG----YVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVK  151 (193)
Q Consensus        76 ~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  151 (193)
                      +++..+...+    ..+++++|+++|+++ +..+..|.||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+.
T Consensus       184 ~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~  262 (285)
T d1wdya_         184 NALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             CHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            8887765543    457899999999998 78899999999999999999999999987788999999999999999999


Q ss_pred             hCcHHHHHHHHHhcCccccccccCC
Q 029474          152 HNQLEALKFLVSIMNDRDFLNAKDD  176 (193)
Q Consensus       152 ~~~~~~~~~Ll~~g~~~~~~~~~d~  176 (193)
                      .|+.+++++|+++|++   +|.+|.
T Consensus       263 ~~~~eiv~~Ll~~GAd---~n~~d~  284 (285)
T d1wdya_         263 LKLKKIAELLCKRGAS---TDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHHSSC---SCCSSC
T ss_pred             cCCHHHHHHHHHCCCC---CCcccC
Confidence            9999999999999999   777763

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=2.3e-27  Score=165.31  Aligned_cols=158  Identities=22%  Similarity=0.235  Sum_probs=135.0

Q ss_pred             chhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCc----------------
Q 029474            2 ERMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPV----------------   65 (193)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~----------------   65 (193)
                      .+++||||+|+..|+.+++++|++.|++   ++.++..|.|||++|+..++.++++.+......                
T Consensus        72 ~~G~TpLh~A~~~g~~~iv~~Ll~~Gad---~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  148 (277)
T d2fo1e1          72 CDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  148 (277)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCeeeccccccccccccccccccccc---cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHH
Confidence            3678999999999999999999999974   556788999999999999999888877643210                


Q ss_pred             ------------------------------cccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 029474           66 ------------------------------LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA  115 (193)
Q Consensus        66 ------------------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a  115 (193)
                                                    .....+..|.|+||+++..++.+++++++.......+..+..|+||||+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A  228 (277)
T d2fo1e1         149 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA  228 (277)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred             HHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHH
Confidence                                          01223456899999999999999999877654444478899999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474          116 AMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus       116 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      +..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++
T Consensus       229 ~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         229 AQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999998 678999999999999999999999999999975

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=147.79  Aligned_cols=119  Identities=21%  Similarity=0.267  Sum_probs=75.8

Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCC-cHHHHHHHcC
Q 029474           41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGR-NPLHMAAMKG  119 (193)
Q Consensus        41 ~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~l~~a~~~~  119 (193)
                      .++||.|+..|+.++|++|++++..+ +.++..|.||+|+|+ .|+.+++++|+++|.++ +..+..+. +|||+|+..|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            45666666666666666666666554 555666666666553 46666666666666666 44444443 5666666666


Q ss_pred             CHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHH
Q 029474          120 RIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVS  163 (193)
Q Consensus       120 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  163 (193)
                      +.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            66666666663 45666666666677777766677777666653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=3e-28  Score=149.03  Aligned_cols=105  Identities=25%  Similarity=0.274  Sum_probs=75.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcH
Q 029474           76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQL  155 (193)
Q Consensus        76 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (193)
                      |||++|+..|+.+++++|+++|.++ +..+..|+||||+|+..++.++++++++ .+.+++.+|..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCch
Confidence            5677777777777777777777666 5666677777777777777777777776 4556667777777777777777777


Q ss_pred             HHHHHHHHhcCccccccccCCCCchHHHHH
Q 029474          156 EALKFLVSIMNDRDFLNAKDDYGMSILHLA  185 (193)
Q Consensus       156 ~~~~~Ll~~g~~~~~~~~~d~~g~tpl~~A  185 (193)
                      +++++|+++|++   ++.+|.+|.||||+|
T Consensus        82 ~~v~~Ll~~Gad---~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD---KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC---SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc---ceeeCCCCCCHHHHH
Confidence            777777777776   677777777777766

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=146.47  Aligned_cols=121  Identities=23%  Similarity=0.287  Sum_probs=108.8

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCC-CHHHHH
Q 029474            3 RMESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRS-SPLHMA   81 (193)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~l~~a   81 (193)
                      ...++||.|+..|+++++++|++.|.   +++.++..|.||||.|+ .|+.+++++|++++..+ +.++..+. +|||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~ga---d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGA---NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTC---CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCC---ccccccccccccccccc-ccccccccccccccccc-ccccccccccccccc
Confidence            45689999999999999999999997   45667899999999775 79999999999999887 56666655 799999


Q ss_pred             HHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 029474           82 AQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR  129 (193)
Q Consensus        82 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  129 (193)
                      +..|+.+++++|+++|.++ +..|..|+||||+|+..|+.+++++|+.
T Consensus        77 ~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999998 8899999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=143.55  Aligned_cols=120  Identities=23%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcC
Q 029474            6 SLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKG   85 (193)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~   85 (193)
                      ++|+.|+..|+++++++|++.+.   +++.+|.+|+||||+|+..|+.+++++|++.+... +.+|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~---d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD---DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS---SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC---Ccccccccccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            45666666666666666666664   33445666666666666666666666666665554 455666666666666666


Q ss_pred             CHHHHHHHHhhCCCccccccCCCCcHHHHH--HHcCCHHHHHHHHH
Q 029474           86 YVEIVKELLQVNPDMCLARDVDGRNPLHMA--AMKGRIQVLVDLFR  129 (193)
Q Consensus        86 ~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~ll~  129 (193)
                      +.+++++|+++|+++.......++|++..+  ...|+.+++++|+.
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            666666666666655222223455554443  23455555555553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.3e-27  Score=145.09  Aligned_cols=106  Identities=25%  Similarity=0.287  Sum_probs=78.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHc
Q 029474            5 ESLLYEASVEGNITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQK   84 (193)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~   84 (193)
                      +|||++|++.|+++.++.|++.|.   +++..+..|.||||+|+..|+.+++++|++++... +.++..|.||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~---d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE---DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC---CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh---cccccccccccccccccccccccccccccccccee-eecccccccchhhhhhc
Confidence            467777777777777777777775   34456777777777777777777777777777665 56677777777777777


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 029474           85 GYVEIVKELLQVNPDMCLARDVDGRNPLHMA  115 (193)
Q Consensus        85 ~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a  115 (193)
                      |+.+++++|+++|.++ +..|..|.||||+|
T Consensus        79 ~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a  108 (118)
T d1myoa_          79 GHVSCVKLLLSKGADK-TVKGPDGLTALEAT  108 (118)
T ss_dssp             TCCHHHHHHHTTCCCS-SSSSSSTCCCCCTC
T ss_pred             Cchhhhhhhhcccccc-eeeCCCCCCHHHHH
Confidence            7777777777777776 66777777777766

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.5e-25  Score=150.10  Aligned_cols=170  Identities=26%  Similarity=0.270  Sum_probs=148.7

Q ss_pred             HHHHHHHHhcCcchhhhhccCCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhh
Q 029474           17 ITTLLQLLEQDPLILDKVVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV   96 (193)
Q Consensus        17 ~~~~~~ll~~~~~~~~~~~~~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   96 (193)
                      .++|+.|++.|+++..  ..|.+|.||||+||..|+.+++++|++.+..+ +.++..+.++++.++..+...........
T Consensus         2 ~~~v~~Ll~~g~din~--~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA--TMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCc--CcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            4789999999985422  14778999999999999999999999999887 67799999999999999998887777776


Q ss_pred             CCCccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCC
Q 029474           97 NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~  176 (193)
                      ...........+.++.+.+.........+.|.. .+.+++..+..|+||++.++..+..++++.+++++.+   ++..|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~  154 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDD  154 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCT
T ss_pred             cccccccccccccccccccccccchhhhhhhhh-hcccccccCCCCCCcchhhcccCcceeeeeecccccc---cccccc
Confidence            655545566778899999988888888888887 6678888999999999999999999999999999988   889999


Q ss_pred             CCchHHHHHHhcCCccC
Q 029474          177 YGMSILHLAVADKQIEV  193 (193)
Q Consensus       177 ~g~tpl~~A~~~~~~ei  193 (193)
                      .|.||||+|+..|+.++
T Consensus       155 ~g~TpL~~A~~~g~~~~  171 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEA  171 (209)
T ss_dssp             TCCCHHHHHHHTTCHHH
T ss_pred             ccccccchhccccHHHH
Confidence            99999999999998763

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.8e-26  Score=140.77  Aligned_cols=121  Identities=28%  Similarity=0.320  Sum_probs=105.1

Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCH
Q 029474           42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRI  121 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  121 (193)
                      ++|+.|+..|+.++|++|++++.++ +.++..|.||||+|+..++.+++++|++.+.+. +..|..|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            6899999999999999999999876 788999999999999999999999999999988 78899999999999999999


Q ss_pred             HHHHHHHHhCCCcccccc-ccCccHHhHH--HHhCcHHHHHHHHHhc
Q 029474          122 QVLVDLFRARPFAAYATT-IWSETVLHLC--VKHNQLEALKFLVSIM  165 (193)
Q Consensus       122 ~~~~~ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~g  165 (193)
                      +++++|++ .+++++..+ ..++||++++  +..|+.+++++|++.+
T Consensus        81 ~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999998 566776555 4578876665  5668899999998754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-24  Score=145.48  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=125.0

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHh----cCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 029474           39 HHETPLHVAALRGHLDFAKEILR----RTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM  114 (193)
Q Consensus        39 ~g~~~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~  114 (193)
                      +|.||||+|+..|+.++++.|++    .+..+ +.+|..|.||||+|+..|+.+++++|++++.+. +.....+.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            69999999999999999998885    45454 778999999999999999999999999999887 6677778888888


Q ss_pred             HHHcCCHHHHHHHHHh-------------------------------------CCCccccccccCccHHhHHHHhCcHHH
Q 029474          115 AAMKGRIQVLVDLFRA-------------------------------------RPFAAYATTIWSETVLHLCVKHNQLEA  157 (193)
Q Consensus       115 a~~~~~~~~~~~ll~~-------------------------------------~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (193)
                      |...++..+++.+...                                     ...........+.++++.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            8877777666555432                                     112222344568899999999999999


Q ss_pred             HHHHHHhcCccccccccCCCCchHHHHHHhcCCccC
Q 029474          158 LKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV  193 (193)
Q Consensus       158 ~~~Ll~~g~~~~~~~~~d~~g~tpl~~A~~~~~~ei  193 (193)
                      +++++++|..   .+.+|..|.||||+|+..|+.|+
T Consensus       160 ~~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~  192 (228)
T d1k1aa_         160 VQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPL  192 (228)
T ss_dssp             HHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHH
T ss_pred             hhhhhhhccc---cccccccCcchHHHHHHcCCHHH
Confidence            9999999988   88999999999999999998763

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.7e-24  Score=137.72  Aligned_cols=122  Identities=23%  Similarity=0.232  Sum_probs=76.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcchhhh---hccCCCCCcHHHHHHHc---CChHHHHHHHhcCCccccccccCCCCHHHH
Q 029474            7 LLYEASVEGNITTLLQLLEQDPLILDK---VVTNRHHETPLHVAALR---GHLDFAKEILRRTPVLAGELDSRRSSPLHM   80 (193)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~---~~~~~~g~~~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~   80 (193)
                      .|+.|++.+++..+..++..+.+....   ...+..|.||||+|++.   ++.+++++|++++..+ +.++..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            466777888888888887776543211   12244566666666653   4456666666666554 5556666666666


Q ss_pred             HHHcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 029474           81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA  130 (193)
Q Consensus        81 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  130 (193)
                      |+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            66666666666666666665 55566666666666666666666666653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.4e-24  Score=135.07  Aligned_cols=125  Identities=17%  Similarity=0.150  Sum_probs=109.7

Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCccc-----cccccCCCCHHHHHHHc---CCHHHHHHHHhhCCCccccccCCCCcHHH
Q 029474           42 TPLHVAALRGHLDFAKEILRRTPVLA-----GELDSRRSSPLHMAAQK---GYVEIVKELLQVNPDMCLARDVDGRNPLH  113 (193)
Q Consensus        42 ~~L~~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~  113 (193)
                      ..|..|++.+++..+..++..+....     ...+..|.||||+|+..   +..+++++|+++|.++ +..+..|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            35678889999999988888765432     22367799999999975   6789999999999998 889999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCcc
Q 029474          114 MAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDR  168 (193)
Q Consensus       114 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  168 (193)
                      +|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++.++..
T Consensus        87 ~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999998 67799999999999999999999999999999988764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=4.6e-26  Score=163.56  Aligned_cols=131  Identities=17%  Similarity=0.230  Sum_probs=107.4

Q ss_pred             ccCCCCCcHHHHHHHcCChHHHHH---HHhcCCccccccccCCCCHHHHHHHcCCHHHHHHHHhhCCCcccccc--CCCC
Q 029474           35 VTNRHHETPLHVAALRGHLDFAKE---ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD--VDGR  109 (193)
Q Consensus        35 ~~~~~g~~~L~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~~~  109 (193)
                      .++..|.|||++|++.|+.+++++   |++.+..+ +.++..|.||||+|+..|+.+++++|+++|++. +..+  ..|.
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~  162 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENY  162 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCC
Confidence            457789999999999999887765   67777765 777999999999999999999999999999987 5544  4589


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCc--cccccccCccHHhHHHHhCcHHHHHHHHHhcCc
Q 029474          110 NPLHMAAMKGRIQVLVDLFRARPFA--AYATTIWSETVLHLCVKHNQLEALKFLVSIMND  167 (193)
Q Consensus       110 ~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  167 (193)
                      ||||+|+..|+.+++++|++.+...  .+..+..+.||++.|+..|+.+++++|++.|++
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            9999999999999999999854322  233445667888889999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.4e-23  Score=145.98  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=93.6

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCccccccccCCCCHHHHHHHcCC-------HHHHHHHHhhCCCccccccCCCC
Q 029474           37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGY-------VEIVKELLQVNPDMCLARDVDGR  109 (193)
Q Consensus        37 ~~~g~~~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~-------~~~~~~ll~~~~~~~~~~~~~~~  109 (193)
                      |..|.||||+|+..|+.++|++|++++.++ +.+|..|+||||.|+..++       .++++.+.+   .. ...+..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~-~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL-ILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG-GEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh-hhcccccC
Confidence            788999999999999999999999999876 6778999999999998664       234444433   22 55677899


Q ss_pred             cHHHHHHHcCC----HH--------HHHHHHHhCCCccccccccCccHHhHHHHhCcHHHHHHHHHhcCccccccccCCC
Q 029474          110 NPLHMAAMKGR----IQ--------VLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDY  177 (193)
Q Consensus       110 ~~l~~a~~~~~----~~--------~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~d~~  177 (193)
                      ||||+++..+.    ..        ++.++.+............+.++++.+........+..+.....-...+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            99998876533    22        3344555444455555555666666655444333332221100001126889999


Q ss_pred             CchHHHHHHhcCCccC
Q 029474          178 GMSILHLAVADKQIEV  193 (193)
Q Consensus       178 g~tpl~~A~~~~~~ei  193 (193)
                      |+||||+|+++|+.+|
T Consensus       259 G~TpLh~A~~~g~~~i  274 (301)
T d1sw6a_         259 GDTCLNIAARLGNISI  274 (301)
T ss_dssp             SCCHHHHHHHHCCHHH
T ss_pred             CCCHHHHHHHcCCHHH
Confidence            9999999999998764