Citrus Sinensis ID: 029510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNASRWSKGMMHHFVKY
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHEEEEccccccccEEEEEEccccccHHHHHHHHHHHcHHcccccccEEEEEEccEEEEEEEcccccccHHHHHHHccccccccccccEEcHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHcccccHHHHHHHHHHccccEcccccHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEEEEEccccccHHHHHHHHccccccccccEEEEHHHHHHHEEcccccccccccccEEcc
Coil and Loop (DISEMBL)
MKMVLKYIEDMDlrrwslpdinAFRIGLREWRSKlncitnpyIYKQLLEINSvdliakgnsdisSRQSAANKFLDKVFRVRLgrgfygeclgvradgnsylsdEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMClrstdsatdTSEIAKayggggsasssSFIIRMDEYNQWLSVNASRwskgmmhhfvky
Flexible Loop (DISEMBL)
MKMVLKYIEdmdlrrwslpdinAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKayggggsassSSFIIRMDEYNQWLSVNasrwskgmmHHFVKY
Low Complexity Region (SEG)
MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYggggsassssFIIRMDEYNQWLSVNASRWSKGMMHHFVKY
Disordered region (IsUnstruct)
***VLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN********AANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLR************************SFIIRMDEYNQWLSVNASRWSKGMMH*****
Disordered Region (DISOPRED)
*KMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNASRWSKGMMHHFVKY
Disordered Region (DISEMBL)
MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKA********SSSFIIRMDEYNQWLSVNASRWSKGMMHHFVKY
Disordered Region (DISPRO)
MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNASRWSKGMMH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNASRWSKGMMHHFVKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
255554581	369	conserved hypothetical protein [Ricinus	0.932	0.485	0.793	5e-75
449438598	365	PREDICTED: uncharacterized protein LOC10	0.932	0.490	0.787	4e-73
359475609	367	PREDICTED: uncharacterized protein LOC10	0.932	0.487	0.806	8e-72
224061011	366	predicted protein [Populus trichocarpa]	0.932	0.489	0.782	1e-71
356527985	326	PREDICTED: uncharacterized protein LOC10	0.911	0.536	0.788	1e-71
357476137	372	hypothetical protein MTR_4g092970 [Medic	0.927	0.478	0.764	1e-70
356519483	471	PREDICTED: uncharacterized protein LOC10	0.932	0.380	0.770	1e-69
15242457	393	uncharacterized protein [Arabidopsis tha	0.895	0.437	0.718	3e-63
116831483	394	unknown [Arabidopsis thaliana]	0.895	0.436	0.718	3e-63
297806989	366	hypothetical protein ARALYDRAFT_325508 [	0.901	0.472	0.714	9e-61

>gi|255554581|ref|XP_002518329.1| conserved hypothetical protein [Ricinus communis] gi|223542549|gb|EEF44089.1| conserved hypothetical protein [Ricinus communis]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 142/179 (79%), Positives = 165/179 (92%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++MVLKY+ED+D+RRWSLPDI AF +GL EWRSKLNCITNP+I+++LLEI+S  LIAKGN
Sbjct: 191 VEMVLKYVEDVDIRRWSLPDIRAFSVGLSEWRSKLNCITNPFIFEELLEISSTSLIAKGN 250

Query: 61  SDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRP 120
           S ISSRQSAA+K L+KVF+VRLGRG YGECLGVRADGNS LSDEIG+QLS +SA AGLRP
Sbjct: 251 SYISSRQSAASKLLEKVFKVRLGRGLYGECLGVRADGNSNLSDEIGRQLSVKSAEAGLRP 310

Query: 121 IGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNAS 179
           +GAV+Y+QRNNLKMCLRSTD+ATDTSE+AKAYGGGGS SSSSFIIRMDEYN+WLS + S
Sbjct: 311 MGAVVYLQRNNLKMCLRSTDNATDTSEVAKAYGGGGSRSSSSFIIRMDEYNRWLSDSPS 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438598|ref|XP_004137075.1| PREDICTED: uncharacterized protein LOC101209755 [Cucumis sativus] gi|449511267|ref|XP_004163910.1| PREDICTED: uncharacterized protein LOC101231614 [Cucumis sativus]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 159/179 (88%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++MVLKYIED DLRRW+LPDI AF IGL EWRSKLNCITNPY+Y+QLLE+NS++LIAKG 
Sbjct: 187 IEMVLKYIEDGDLRRWNLPDIRAFNIGLSEWRSKLNCITNPYMYEQLLEMNSLELIAKGT 246

Query: 61  SDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRP 120
             I+SR++AANK LDK F++RLGRG YGECL VRADGNS LSDEIGKQLS RS AAGLRP
Sbjct: 247 DFIASRENAANKILDKSFKIRLGRGLYGECLAVRADGNSNLSDEIGKQLSMRSVAAGLRP 306

Query: 121 IGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNAS 179
           IGAVIYMQRNNLKMCLR+TD ATDTSE++KAYGGGGS  SSSF+IRMDEYN W  VN+S
Sbjct: 307 IGAVIYMQRNNLKMCLRTTDDATDTSEVSKAYGGGGSPRSSSFMIRMDEYNAWRLVNSS 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475609|ref|XP_002263300.2| PREDICTED: uncharacterized protein LOC100259417 [Vitis vinifera] gi|296088077|emb|CBI35436.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (702), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 160/181 (88%), Gaps = 2/181 (1%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++MVLKYIED DL RW LPDI AF IGL  WRSK N ITNP +Y+QLLEI++VDLI+KGN
Sbjct: 187 IEMVLKYIEDGDLCRWKLPDIKAFNIGLSGWRSKFNSITNPCMYEQLLEISAVDLISKGN 246

Query: 61  SDISSRQSAANKFL--DKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGL 118
           S ISS Q AA+  L  +KVF+VRLGRGFYGECLGVRADGNS L+DEIGKQLS +SAAAGL
Sbjct: 247 SYISSCQHAASNLLKLNKVFKVRLGRGFYGECLGVRADGNSNLTDEIGKQLSQKSAAAGL 306

Query: 119 RPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNA 178
           RPIGAV YMQRNNLKMCLRSTDSATDTSE+AKAYGGGGS SSSSFIIRMDEYNQWLSVN+
Sbjct: 307 RPIGAVTYMQRNNLKMCLRSTDSATDTSEVAKAYGGGGSPSSSSFIIRMDEYNQWLSVNS 366

Query: 179 S 179
           S
Sbjct: 367 S 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061011|ref|XP_002300315.1| predicted protein [Populus trichocarpa] gi|222847573|gb|EEE85120.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 161/179 (89%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++MVLKYIEDMDLRR SLPDI AF +G+ EWRSK N +TNPY++++LLEI+ VD+I KGN
Sbjct: 188 VEMVLKYIEDMDLRRRSLPDIRAFNVGIGEWRSKFNYVTNPYMFEELLEISPVDIIEKGN 247

Query: 61  SDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRP 120
           S ISSR +AA+K +DKVF+VRLGRG YGECLGVRADG S+LSDEIGK+LS +SAAAG RP
Sbjct: 248 SYISSRWTAASKLMDKVFKVRLGRGVYGECLGVRADGYSHLSDEIGKELSVKSAAAGFRP 307

Query: 121 IGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNAS 179
           IGAV+YM RN+LKMCLRS DSATDTSE+AKAYGGGGS SSSSFIIRMDEYNQWLSVNAS
Sbjct: 308 IGAVVYMLRNDLKMCLRSIDSATDTSEVAKAYGGGGSPSSSSFIIRMDEYNQWLSVNAS 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527985|ref|XP_003532586.1| PREDICTED: uncharacterized protein LOC100778583, partial [Glycine max]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/175 (78%), Positives = 159/175 (90%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++++LKYIED DLRRWSLP I AF IGL EWRS+ NCI+NPY+YKQLL++++ DLI KGN
Sbjct: 148 VELMLKYIEDGDLRRWSLPGIRAFNIGLSEWRSRFNCISNPYMYKQLLKLSAEDLITKGN 207

Query: 61  SDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRP 120
           S +SSRQ+AA+K L+K FRVRLGRGFYGECLGVRADGNS LSDEIGK LS +SAA GLRP
Sbjct: 208 SCVSSRQNAASKLLEKAFRVRLGRGFYGECLGVRADGNSNLSDEIGKLLSVKSAATGLRP 267

Query: 121 IGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLS 175
           IGAVI+MQRNNLKMCLRSTDS+TDTSE+AKAYGGGGS SSSSFIIR+DEYNQW+S
Sbjct: 268 IGAVIFMQRNNLKMCLRSTDSSTDTSEVAKAYGGGGSPSSSSFIIRLDEYNQWIS 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476137|ref|XP_003608354.1| hypothetical protein MTR_4g092970 [Medicago truncatula] gi|355509409|gb|AES90551.1| hypothetical protein MTR_4g092970 [Medicago truncatula]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 160/178 (89%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++++LKYIED DLR WSLPDI  F IGL EWRS+ +CI+NPY++KQLLE++  +LIAKGN
Sbjct: 194 VELILKYIEDADLRHWSLPDIKPFNIGLSEWRSRFSCISNPYMFKQLLELSVEELIAKGN 253

Query: 61  SDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRP 120
           S + +R++AA+K LDKVFRVRLGRGFYGECLGVRADGNS LSDEIG  LS +SA+ GLRP
Sbjct: 254 SSLLARRNAASKLLDKVFRVRLGRGFYGECLGVRADGNSNLSDEIGMLLSVKSASIGLRP 313

Query: 121 IGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNA 178
           IGAVI+MQRNNLKMCLRS+D+ATDTSE+AKAYGGGGSASSSSFIIRMDEYNQWLS N+
Sbjct: 314 IGAVIFMQRNNLKMCLRSSDNATDTSEVAKAYGGGGSASSSSFIIRMDEYNQWLSANS 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519483|ref|XP_003528402.1| PREDICTED: uncharacterized protein LOC100819357 [Glycine max]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/179 (77%), Positives = 159/179 (88%)

Query: 1   MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
           ++++LKYIE+ DLRRWSLP I  F IGL EWRS+ NCI+N  +YKQLLE+++  LIAKGN
Sbjct: 293 VQLMLKYIENGDLRRWSLPGIRVFNIGLSEWRSRFNCISNSCMYKQLLELSAEGLIAKGN 352

Query: 61  SDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRP 120
           S +S+RQ+AANK L+KVFRVRLGRGFYGECLGVRADGNS LSDEIGK LS +SAA GLRP
Sbjct: 353 SCVSARQNAANKLLEKVFRVRLGRGFYGECLGVRADGNSNLSDEIGKLLSVKSAATGLRP 412

Query: 121 IGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSVNAS 179
           IGAVI+MQRNNLKMCLRSTDS+TDTSE+AK YGGGGS SSSSFIIRMDEYNQW+S N+S
Sbjct: 413 IGAVIFMQRNNLKMCLRSTDSSTDTSEVAKGYGGGGSPSSSSFIIRMDEYNQWISGNSS 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242457|ref|NP_196520.1| uncharacterized protein [Arabidopsis thaliana] gi|7671431|emb|CAB89372.1| putative protein [Arabidopsis thaliana] gi|98961675|gb|ABF59167.1| unknown protein [Arabidopsis thaliana] gi|332004029|gb|AED91412.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/174 (71%), Positives = 149/174 (85%), Gaps = 2/174 (1%)

Query: 4   VLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDI 63
           VL YIED+DLRRW LPDI AF  GL++WRS++NCI NPY+Y+QLL+I+S DLIA GNS  
Sbjct: 218 VLDYIEDIDLRRWMLPDIKAFSFGLKDWRSRINCIINPYMYEQLLKISSADLIAYGNSYF 277

Query: 64  SSRQSAANKFL--DKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPI 121
           SSR   A K L  +K F++RLGRG YGECLG+RADGN  LSDE+GK LS +S+AAGLRPI
Sbjct: 278 SSRLIDAKKLLKLNKAFKIRLGRGLYGECLGMRADGNHQLSDELGKLLSLQSSAAGLRPI 337

Query: 122 GAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLS 175
           GAV ++QRNNLKMCLRSTD+ T+TSE+AKAYGGGG++SSSSFIIRMDEYNQW+S
Sbjct: 338 GAVTFVQRNNLKMCLRSTDAITNTSEVAKAYGGGGTSSSSSFIIRMDEYNQWIS 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831483|gb|ABK28694.1| unknown [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/174 (71%), Positives = 149/174 (85%), Gaps = 2/174 (1%)

Query: 4   VLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDI 63
           VL YIED+DLRRW LPDI AF  GL++WRS++NCI NPY+Y+QLL+I+S DLIA GNS  
Sbjct: 218 VLDYIEDIDLRRWMLPDIKAFSFGLKDWRSRINCIINPYMYEQLLKISSADLIAYGNSYF 277

Query: 64  SSRQSAANKFL--DKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPI 121
           SSR   A K L  +K F++RLGRG YGECLG+RADGN  LSDE+GK LS +S+AAGLRPI
Sbjct: 278 SSRLIDAKKLLKLNKAFKIRLGRGLYGECLGMRADGNHQLSDELGKLLSLQSSAAGLRPI 337

Query: 122 GAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLS 175
           GAV ++QRNNLKMCLRSTD+ T+TSE+AKAYGGGG++SSSSFIIRMDEYNQW+S
Sbjct: 338 GAVTFVQRNNLKMCLRSTDAITNTSEVAKAYGGGGTSSSSSFIIRMDEYNQWIS 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806989|ref|XP_002871378.1| hypothetical protein ARALYDRAFT_325508 [Arabidopsis lyrata subsp. lyrata] gi|297317215|gb|EFH47637.1| hypothetical protein ARALYDRAFT_325508 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 125/175 (71%), Positives = 146/175 (83%), Gaps = 2/175 (1%)

Query: 4   VLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDI 63
           VL YIED+DLRRW LPDI AF  GL++WRS++NCITNPY+Y+QLL+I+S DLIA GNS  
Sbjct: 191 VLDYIEDIDLRRWMLPDIKAFSFGLKDWRSRINCITNPYMYEQLLKISSADLIAYGNSYF 250

Query: 64  SSRQSAANKFLDKVFR--VRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPI 121
           SSR   A K L       +RLGRG YGECLG+RADGN  LSDE+GK LS +S+AAGLRPI
Sbjct: 251 SSRLLDAKKLLKLNKAFKIRLGRGLYGECLGMRADGNHQLSDELGKLLSLQSSAAGLRPI 310

Query: 122 GAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLSV 176
           GA+ +MQRNNLKMCLRSTD+ TDTSE+AKAYGGGG++SSSSFIIRMDEYNQW+S 
Sbjct: 311 GAITFMQRNNLKMCLRSTDAITDTSEVAKAYGGGGTSSSSSFIIRMDEYNQWIST 365

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2144786	393	AT5G09580 "AT5G09580" [Arabido	0.911	0.445	0.661	5e-60
TAIR|locus:505006182	325	AT1G53345 "AT1G53345" [Arabido	0.895	0.529	0.296	1.3e-20

TAIR|locus:2144786 AT5G09580 "AT5G09580" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/177 (66%), Positives = 141/177 (79%)

Query:     1 MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
             ++ VL YIED+DLRRW LPDI AF  GL++WRS++NCI NPY+Y+QLL+I+S DLIA GN
Sbjct:   215 VESVLDYIEDIDLRRWMLPDIKAFSFGLKDWRSRINCIINPYMYEQLLKISSADLIAYGN 274

Query:    61 SDISSRQSAANKFL--DKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGL 118
             S  SSR   A K L  +K F++RLGRG YGECLG+RADGN  LSDE+GK LS +S+AAGL
Sbjct:   275 SYFSSRLIDAKKLLKLNKAFKIRLGRGLYGECLGMRADGNHQLSDELGKLLSLQSSAAGL 334

Query:   119 RPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYXXXXXXXXXXFIIRMDEYNQWLS 175
             RPIGAV ++QRNNLKMCLRSTD+ T+TSE+AKAY          FIIRMDEYNQW+S
Sbjct:   335 RPIGAVTFVQRNNLKMCLRSTDAITNTSEVAKAYGGGGTSSSSSFIIRMDEYNQWIS 391

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006182 AT1G53345 "AT1G53345" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 53/179 (29%), Positives = 94/179 (52%)

Query:     1 MKMVLKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGN 60
             M+ V +YIED D+ +W LP+  AF  G+ + + + +   N  ++ QLL ++   +I +G 
Sbjct:   145 MRRVFEYIEDADIWKWELPESKAFNSGILDLKIEYDFNKNQSLFDQLLSLDHESVINRGK 204

Query:    61 SDISSRQSAANKFLDKVFRVRLGRGF-YGECLGVRADGNSYLSDEIGKQLSARSAAAGLR 119
               +S +    ++ L++ + + LG    +G CL V AD  + L  E+G QL+ +S    LR
Sbjct:   205 QSLSKKHKLIHEVLEQSYEIVLGGDEEFGRCLAVNADEITELRSELGNQLAEKSKNLSLR 264

Query:   120 PIGAVIYM-----QRNNLKMCLRSTDSATDTSEIAKAYXXXXXXXXXXFIIRMDEYNQW 173
              +GAV+Y        N LK+ LRS  +  DT+ +++ +          F++   E+ QW
Sbjct:   265 GVGAVVYRVPELGDENKLKISLRSV-AEEDTTPVSQRFGGGGHKNASSFLLNSMEFEQW 322


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       182   0.00098  109 3  11 22  0.39    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.54u 0.16s 14.70t   Elapsed:  00:00:01
  Total cpu time:  14.54u 0.16s 14.70t   Elapsed:  00:00:01
  Start:  Sat May 11 00:00:28 2013   End:  Sat May 11 00:00:29 2013

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I002745 hypothetical protein (366 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PRK14538	838	putative bifunctional signaling protein/50S riboso	99.43
COG0618	332	Exopolyphosphatase-related proteins [General funct	99.21
COG2404	339	Predicted phosphohydrolase (DHH superfamily) [Gene	99.18
PF02272	68	DHHA1: DHHA1 domain; InterPro: IPR003156 This doma	98.7
COG3887	655	Predicted signaling protein consisting of a modifi	98.05
TIGR00644	539	recJ single-stranded-DNA-specific exonuclease RecJ	97.87
PRK11070	575	ssDNA exonuclease RecJ; Provisional	97.16
COG0608	491	RecJ Single-stranded DNA-specific exonuclease [DNA	80.7

>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional

Probab=99.43  E-value=6.7e-13  Score=129.46  Aligned_cols=146  Identities=13%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             HHHHHHhCc-cccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHHccChH-----HHHhcCcchHHhHHHHHHH
Q 029510            4 VLKYIEDMD-LRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLLEINSV-----DLIAKGNSDISSRQSAANK   72 (192)
Q Consensus         4 lv~~i~d~D-lwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~~~~~~-----~~~~~G~~l~~~~~~~i~~   72 (192)
                      +.++++... -++.+...++.+++++  ||..|.+  .++|.+|+   .|.+.+++     .++  ...+..  .++...
T Consensus       503 V~Ell~~~~~~i~l~~~eAt~LyaGI~tDTg~F~~--~Tt~rTFeaAA~L~~~GAD~~~V~~~l--~~~l~~--~~l~~~  576 (838)
T PRK14538        503 LVELMGFLEKEIHITAFEASIMYAGILIDTNAFIY--RTSSRTFEVASKLKDLGADAIEVKSWL--RKDFDK--VLEINK  576 (838)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHhHHHHHcCCccc--CCCHHHHHHHHHHHHcCCCHHHHHHHH--hCCHHH--HHHHHH
Confidence            445554433 1345556788899998  8999988  47788886   88887775     222  234444  555666


Q ss_pred             HHhHHhhHhcCCceecceeeeecC--CCccchhHHHHHH-HHhhhccCCccceEEEEE-E-CCeEEEEEecCCCCCCHHH
Q 029510           73 FLDKVFRVRLGRGFYGECLGVRAD--GNSYLSDEIGKQL-SARSAAAGLRPIGAVIYM-Q-RNNLKMCLRSTDSATDTSE  147 (192)
Q Consensus        73 ~l~~a~~~~~g~~~~~~~l~v~~~--~~~~~~s~lg~~l-~~~~~~~~l~~~~~~~~~-~-~~~~~vslRS~~~~~~v~~  147 (192)
                      ++.+..... ++..+    .....  ......+.+.+.+ ..++.+.      ++++. . ++.++||+||+++ +||+.
T Consensus       577 ll~~~ei~~-~~iAi----a~~~e~~~~~~~~a~~ad~Ll~I~gv~a------sfV~~e~~d~~i~ISaRS~g~-inVq~  644 (838)
T PRK14538        577 LISKMEIFM-DRFAI----IKSEEIYDNRSFLAQVAESVLNIQNVDA------AFMIAKISDNTIAISARSYNE-INVQT  644 (838)
T ss_pred             HHhccEEec-CcEEE----EEEhHHhhccchHHHHHHHHhcccCeeE------EEEEEEEcCCEEEEEEEeCCC-CCHHH
Confidence            676665432 22222    11111  1122235555555 4444322      23343 3 7779999999965 99999


Q ss_pred             HHhhCCCCCcccccCcccCh
Q 029510          148 IAKAYGGGGSASSSSFIIRM  167 (192)
Q Consensus       148 iA~~~gGGGH~~AaG~~~~~  167 (192)
                      ||++||||||++|||+.++.
T Consensus       645 Iae~~GGGGH~~AAGaqi~~  664 (838)
T PRK14538        645 IMEQMEGGGHLNSAATQIKG  664 (838)
T ss_pred             HHHHhCCCccHhhheEEeCC
Confidence            99999999999999999754

>COG0618 Exopolyphosphatase-related proteins [General function prediction only]

Probab=99.21  E-value=7.9e-11  Score=104.20  Aligned_cols=46  Identities=26%  Similarity=0.439  Sum_probs=38.7

Q ss_pred             CCeEEEEEecCCCCCCHHHHHhhCCCCCcccccCcccCh---hhHHHHhh
Q 029510          129 RNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRM---DEYNQWLS  175 (192)
Q Consensus       129 ~~~~~vslRS~~~~~~v~~iA~~~gGGGH~~AaG~~~~~---~~~~~~~~  175 (192)
                      ++.+++++||++. .+|+++|..||||||+.|||++++.   ++.++++.
T Consensus       270 ~~~~r~~~rs~~~-~~v~~~A~~~gGGGH~~AaG~~i~~~~~~~~~~l~~  318 (332)
T COG0618         270 DGSIRVSDRSKGI-GNVNEIAFKFGGGGHALAAGARIPLGILESADDLLK  318 (332)
T ss_pred             CceEEEecccCCc-HHHHHHHhhcCCCCCcccCeeEecccHHHHHHHHHH
Confidence            4489999999964 8999999999999999999999885   55554443

>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]

Probab=99.18  E-value=2.9e-11  Score=106.42  Aligned_cols=152  Identities=14%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             ChhHHHHHHhCccccccCCCcHHHHHHH--hhcCCcccccC----c-HHHHHHHHccChH-------HHHhcCcchHHhH
Q 029510            1 MKMVLKYIEDMDLRRWSLPDINAFRIGL--REWRSKLNCIT----N-PYIYKQLLEINSV-------DLIAKGNSDISSR   66 (192)
Q Consensus         1 ~p~lv~~i~d~Dlwrf~~~~t~~i~a~L--~~~~fd~~~~~----~-~~~~~~L~~~~~~-------~~~~~G~~l~~~~   66 (192)
                      +|.|++++++.|+|.|+.|....+..++  ...-|+.+.|.    . ++.++-+-.....       ..+.+. .+.+-.
T Consensus       136 ~~~lve~v~s~DiW~~e~~~~~~~~~~~~l~r~~~d~~~~~~~l~~~e~~~~~l~k~~~gi~~de~~~~~l~~-~~~~~~  214 (339)
T COG2404         136 LEQLVELVRSVDIWLWEDYGLGMIPQGSELNRFMFDDNQWEYLLGDGEEYKDYLKKFNAGILWDEVLDYILQI-AVGRDK  214 (339)
T ss_pred             HHHHHHHhcccchhhccCcccccccchhhHHHHhhcchHHHHhhcchHHHHHHHHHhhcCcccHHHHHHHHHH-Hhhcch
Confidence            4789999999999999999955454442  11111211111    1 1222211111100       011111 111101


Q ss_pred             HHHHHHHHhHHhhHhcCCceecceeeeecCCCccchhHHHHHHHHhhhccCCccceEEEEEECCeEEEEEecCCCCCCH-
Q 029510           67 QSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDT-  145 (192)
Q Consensus        67 ~~~i~~~l~~a~~~~~g~~~~~~~l~v~~~~~~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~~~~~~vslRS~~~~~~v-  145 (192)
                      ...++...+++....+...... +-..........++..|+ ......     .+.+.+...++  .+|+||++. +|+ 
T Consensus       215 ~~~l~~~~kr~~~~~i~~~~~~-~~i~y~~~~g~~s~~~g~-~~~~~~-----d~vv~~~~~d~--~~~~~sk~~-~n~~  284 (339)
T COG2404         215 IETLSNASKRVVTITIDDKKHV-VEIYYRGPGGYDSSIMGQ-TDELYN-----DFVVFVLRSDS--GISDRSKNN-ANVN  284 (339)
T ss_pred             hHHHHHHHHhHhhhccccceee-EEEEecCCCCcchhhccc-hhhhhc-----ceeEEeccCCC--ccccccccc-Cccc
Confidence            3455666667766544442221 011111222235666666 333332     11122223344  578888863 666 


Q ss_pred             ---HHHHh-hCCCCCcccccCc
Q 029510          146 ---SEIAK-AYGGGGSASSSSF  163 (192)
Q Consensus       146 ---~~iA~-~~gGGGH~~AaG~  163 (192)
                         .++|+ +|||||||+|||.
T Consensus       285 ~~~a~~~~~~~gGGGH~nAaG~  306 (339)
T COG2404         285 IDVAEIAQVQYGGGGHPNAAGG  306 (339)
T ss_pred             hhHHHHHHhhcCCCCCcccccc
Confidence               88998 8999999999993

>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain

Probab=98.70  E-value=1.5e-08  Score=69.25  Aligned_cols=48  Identities=27%  Similarity=0.422  Sum_probs=39.5

Q ss_pred             EECCeEEEEEecCCCCCCHH-HHHhhC------CCCCcccccCcccChhh-HHHHhh
Q 029510          127 MQRNNLKMCLRSTDSATDTS-EIAKAY------GGGGSASSSSFIIRMDE-YNQWLS  175 (192)
Q Consensus       127 ~~~~~~~vslRS~~~~~~v~-~iA~~~------gGGGH~~AaG~~~~~~~-~~~~~~  175 (192)
                      ..++++++|+||.++ ++.. ++++.+      +||||+.|||+.++.+. +++++.
T Consensus         9 ~~~~~~~~s~rs~~~-~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~~   64 (68)
T PF02272_consen    9 EEDGKIKVSARSSKG-VDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFLK   64 (68)
T ss_dssp             EESSTEEEEEEESSS-STHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHHH
T ss_pred             EcCCEEEEEEEECCc-hhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHHH
Confidence            458999999999865 8888 666665      69999999999988766 887775

DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]

Probab=98.05  E-value=9.4e-06  Score=76.54  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             CCeEEEEEecCCCCCCHHHHHhhCCCCCcccccCcccC
Q 029510          129 RNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIR  166 (192)
Q Consensus       129 ~~~~~vslRS~~~~~~v~~iA~~~gGGGH~~AaG~~~~  166 (192)
                      ++.+.+|-||.++ ++|..|++++|||||.++|++.+.
T Consensus       596 ~~~i~ISaRS~g~-iNVQ~ImEaLGGGGH~tnAAtql~  632 (655)
T COG3887         596 DGLISISARSLGK-INVQVIMEALGGGGHLTNAATQLK  632 (655)
T ss_pred             CCeEEEEecccCC-chHHHHHHHhcCcchhhHHHHhhc
Confidence            7889999999986 999999999999999999999754

>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ

Probab=97.87  E-value=0.00014  Score=68.47  Aligned_cols=69  Identities=13%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             ccchhHHHHHHHHhhhccCCccceEEEEEE-CCe-EEEEEecCCCCCCHHHHH----h-hC-CCCCcccccCcccChhhH
Q 029510           99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQ-RNN-LKMCLRSTDSATDTSEIA----K-AY-GGGGSASSSSFIIRMDEY  170 (192)
Q Consensus        99 ~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~-~~~-~~vslRS~~~~~~v~~iA----~-~~-gGGGH~~AaG~~~~~~~~  170 (192)
                      +.....++..++.+.   +. |  ++++.. ++. +|.|.||.++ +|+.++-    . .+ .||||+.|||++++.+.+
T Consensus       336 ~Gv~GivA~rl~~~~---~k-P--~ivls~~~~~~~kgS~Rs~~g-~nl~~~l~~~~~~~l~~~GGH~~AaG~~i~~~~~  408 (539)
T TIGR00644       336 PGVLGIVASRLAETF---NK-P--VIVLAIDEGKGAKGSARSISG-IDLYDLLSELREALFLKFGGHAMAAGLTLKRENL  408 (539)
T ss_pred             CchHHHHHHHHHHHH---CC-C--EEEEEEcCCceEEEeeccCCC-CcHHHHHHHHHHhhccccCChHHcCeeEEcHHHH
Confidence            445566666666544   32 3  344443 444 8999999975 9998743    3 33 499999999999997777


Q ss_pred             HHHh
Q 029510          171 NQWL  174 (192)
Q Consensus       171 ~~~~  174 (192)
                      +++.
T Consensus       409 ~~f~  412 (539)
T TIGR00644       409 EEFR  412 (539)
T ss_pred             HHHH
Confidence            6665

All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.

>PRK11070 ssDNA exonuclease RecJ; Provisional

Probab=97.16  E-value=0.0043  Score=59.16  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=46.5

Q ss_pred             ccchhHHHHHHHHhhhccCCccceEEEEEE--CCeEEEEEecCCCCCCHHHHHh--------h-CCCCCcccccCcccCh
Q 029510           99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQ--RNNLKMCLRSTDSATDTSEIAK--------A-YGGGGSASSSSFIIRM  167 (192)
Q Consensus        99 ~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~--~~~~~vslRS~~~~~~v~~iA~--------~-~gGGGH~~AaG~~~~~  167 (192)
                      +.+..-++..++.+.   +- |  ++++..  ++..|-|.||.++ +|+.+.=+        . ...|||+.|||++++.
T Consensus       365 ~GViGIVAsrl~e~y---~r-P--~ivls~~~~g~~kGS~RSi~g-~~l~~aL~~~~~~~~~ll~~fGGH~~AaG~ti~~  437 (575)
T PRK11070        365 QGVVGILASRIKERF---HR-P--VIAFAPAGDGTLKGSGRSIQG-LHMRDALERLDTLYPGLILKFGGHAMAAGLSLEE  437 (575)
T ss_pred             ccHHHHHHHHHHHHH---CC-C--EEEEEEcCCCeEEEEEeCCCC-CcHHHHHHHhhhcccchhhccCChHHhCcceeCH
Confidence            344455555555544   33 3  444543  4789999999975 99875322        2 3699999999999987


Q ss_pred             hhHHHHh
Q 029510          168 DEYNQWL  174 (192)
Q Consensus       168 ~~~~~~~  174 (192)
                      +.++.+.
T Consensus       438 e~l~~f~  444 (575)
T PRK11070        438 DKFELFQ  444 (575)
T ss_pred             HHHHHHH
Confidence            7776655

>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]

Probab=80.70  E-value=7.5  Score=36.24  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=30.5

Q ss_pred             CCeEEEEEecCC-CCCCHHH----HHh--hC-CCCCcccccCcccChhhHHHHh
Q 029510          129 RNNLKMCLRSTD-SATDTSE----IAK--AY-GGGGSASSSSFIIRMDEYNQWL  174 (192)
Q Consensus       129 ~~~~~vslRS~~-~~~~v~~----iA~--~~-gGGGH~~AaG~~~~~~~~~~~~  174 (192)
                      .+..|-|.||.+ . .++.+    ...  .+ .+|||+.|+|+++..+.++.+.
T Consensus       334 ~~~~kgs~rsi~~~-~~~~~~l~~~~~~~~~~~~gGh~~aagl~~~~~~~~~~~  386 (491)
T COG0608         334 EGGAKGSARSIAKG-IDLRKLLRKGRSKLLLEKFGGHAMAAGLSLKEENLEEFR  386 (491)
T ss_pred             ccccccceeecchh-hhHHHHHHhcCcHhhhhccCCccccCceEeeHhhhHHHH
Confidence            345688999996 3 66665    222  22 3899999999998765554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3dma_A	343	Exopolyphosphatase-related protein; structural gen	99.62
3dev_A	320	SH1221; alpha-beta protein., structural genomics,	99.57
2zxr_A	666	Single-stranded DNA specific exonuclease RECJ; DNA	97.87
2haw_A	309	Manganese-dependent inorganic pyrophosphatase; sub	80.04

>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}

Probab=99.62  E-value=9.8e-16  Score=134.66  Aligned_cols=150  Identities=16%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             HHHHHHhCcc-ccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHHccChH-----HHHhcCcchHHhHHHHHHH
Q 029510            4 VLKYIEDMDL-RRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLLEINSV-----DLIAKGNSDISSRQSAANK   72 (192)
Q Consensus         4 lv~~i~d~Dl-wrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~~~~~~-----~~~~~G~~l~~~~~~~i~~   72 (192)
                      +.++++..+- +..+...++.+++++  ||..|.+ ..++|+.++   +|++.+.+     ..+.......+  .++...
T Consensus       149 v~~l~~~~~~~~~i~~~~At~L~~GI~tDTg~F~~-~~Tt~~t~~aaa~L~~~Gad~~~i~~~l~~~~s~~~--~~l~~~  225 (343)
T 3dma_A          149 VFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTY-NSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESR--LRLMGY  225 (343)
T ss_dssp             HHHHHHHTTCGGGCCHHHHHHHHHHHHHHTTTTTS-SCCCHHHHHHHHHHHTTTCCHHHHHHHHHSCCCHHH--HHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHhccCCHHH--HHHHHH
Confidence            4566666551 344555677788888  8999988 456787776   88887654     45667777776  778888


Q ss_pred             HHhHHhhHhcCCceecceeeeec------CCCccchhHHHHHH-HHhhhccCCccceEEEEEE--C-CeEEEEEecCCCC
Q 029510           73 FLDKVFRVRLGRGFYGECLGVRA------DGNSYLSDEIGKQL-SARSAAAGLRPIGAVIYMQ--R-NNLKMCLRSTDSA  142 (192)
Q Consensus        73 ~l~~a~~~~~g~~~~~~~l~v~~------~~~~~~~s~lg~~l-~~~~~~~~l~~~~~~~~~~--~-~~~~vslRS~~~~  142 (192)
                      ++.+.+....++..+.   .+..      +......+.+.+.+ ..++.+.      ++++.+  + +.+++|+||++ .
T Consensus       226 ~l~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~d~~~~v~~ll~i~gv~~------~~~~~e~~~~~~i~vs~RS~~-~  295 (343)
T 3dma_A          226 VLSNMKVYKDYNSALI---SLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCF------SCFLREDTEKKMIKISLRSVG-K  295 (343)
T ss_dssp             HHHTCEEETTTTEEEE---EECHHHHHHTTCCTTTTTTGGGGGGGSTTCCE------EEEEEECCCC--EEEEEEESS-S
T ss_pred             HHhceEEecCCCEEEE---EEcHHHHHHcCCCHHHHHHHHHHhcccCCEEE------EEEEEEecCCCEEEEEEecCC-C
Confidence            8887766544443321   1221      11122233344444 4444322      344544  3 78999999996 4


Q ss_pred             CCHHHHHhh-CCCCCcccccCcccC
Q 029510          143 TDTSEIAKA-YGGGGSASSSSFIIR  166 (192)
Q Consensus       143 ~~v~~iA~~-~gGGGH~~AaG~~~~  166 (192)
                      +||++||++ ||||||++|||++++
T Consensus       296 ~~v~~i~~~~~ggGGH~~aag~~~~  320 (343)
T 3dma_A          296 FPCNRLAAEFFNGGGHLNASGGEFY  320 (343)
T ss_dssp             CCHHHHHHHHTSCEECSSEEEEEEC
T ss_pred             CCHHHHHHhCCCCCCcHHhCeeEEc
Confidence            999999999 999999999999975

>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}

Probab=99.57  E-value=1.8e-15  Score=131.97  Aligned_cols=157  Identities=13%  Similarity=0.175  Sum_probs=98.2

Q ss_pred             HHHHHHhCc-cccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHHccChH-----HHHhcCcchHHhHHHHHHH
Q 029510            4 VLKYIEDMD-LRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLLEINSV-----DLIAKGNSDISSRQSAANK   72 (192)
Q Consensus         4 lv~~i~d~D-lwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~~~~~~-----~~~~~G~~l~~~~~~~i~~   72 (192)
                      +.++++..+ -+..+...++.+++++  ||..|.+ ..++|+.++   +|++.+.+     +.+ ....+.+  .++...
T Consensus       130 v~~~~~~~~~~~~i~~~~A~~L~~GI~tDTg~F~~-~~tt~~t~~aaa~L~~~Gad~~~i~~~l-~~~s~~~--~~l~~~  205 (320)
T 3dev_A          130 IFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLF-SNTSPHTMEVASQLLAYPFNHNAELNKM-SEKDPKL--MPFQGY  205 (320)
T ss_dssp             HHHHHHTTTCTTTCCHHHHHHHHHHHHHHTTTTTS-TTCCHHHHHHHHHHHHSSSCHHHHHHHH-HCBCGGG--HHHHHH
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHccCcCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH-HhCCHHH--HHHHHH
Confidence            456666442 1445555677788888  8999888 456677776   88886554     223 3445544  777788


Q ss_pred             HHhHHhhHhcCCceecceeeeecC------CCccchhHHHHHH-HHhhhccCCccceEEEEEE-CCeEEEEEecCCCCCC
Q 029510           73 FLDKVFRVRLGRGFYGECLGVRAD------GNSYLSDEIGKQL-SARSAAAGLRPIGAVIYMQ-RNNLKMCLRSTDSATD  144 (192)
Q Consensus        73 ~l~~a~~~~~g~~~~~~~l~v~~~------~~~~~~s~lg~~l-~~~~~~~~l~~~~~~~~~~-~~~~~vslRS~~~~~~  144 (192)
                      ++.+.+....|+..+.   .+...      ......+.+.+.+ ..++.+.      ++++.+ ++.+++|+||+  ++|
T Consensus       206 ~l~~~~~~~~g~~a~~---~~~~~~~~~~~~~~~~~~~lv~~l~~i~gv~~------~~~~~~~~~~~~~s~RS~--~~~  274 (320)
T 3dev_A          206 VLQNFELSDSHEYCQI---KITNDVLKQFDIQPNEASQFVNTVADISGLKI------WMFGVDEGDQIRCRIRSK--GIT  274 (320)
T ss_dssp             HHHSCCBCTTSSEEEE---EECHHHHHHTTCCHHHHTTCGGGSTTBTTCCE------EEEEEECSSSEEEEEEES--SSC
T ss_pred             HHhceEEecCCcEEEE---EEcHHHHHHcCCCHHHHHHHHHHHhCcCCcEE------EEEEEEECCEEEEEEecC--CcC
Confidence            8887776544433221   22210      1111222222343 3333222      244444 55899999999  499


Q ss_pred             HHHHHhhCCCCCcccccCccc-ChhhHHHHhh
Q 029510          145 TSEIAKAYGGGGSASSSSFII-RMDEYNQWLS  175 (192)
Q Consensus       145 v~~iA~~~gGGGH~~AaG~~~-~~~~~~~~~~  175 (192)
                      |++||++||||||++|||+++ +.+++.+.+.
T Consensus       275 v~~i~~~~gGGGH~~AAg~~~~~~~~~~~~~~  306 (320)
T 3dev_A          275 INDVANQFGGGGHPNASGVSVYSWDEFEELAQ  306 (320)
T ss_dssp             CHHHHHHTTCEEETTEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcHHhceeecCCHHHHHHHHH
Confidence            999999999999999999996 5666666554

>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A

Probab=97.87  E-value=2.9e-05  Score=73.59  Aligned_cols=66  Identities=14%  Similarity=0.182  Sum_probs=45.9

Q ss_pred             cchhHHHHHHHHhhhccCCccceEEEEEECCeEEEEEecCCCCCCHHHHHhhC-----CCCCcccccCcccChhhHHHHh
Q 029510          100 YLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAY-----GGGGSASSSSFIIRMDEYNQWL  174 (192)
Q Consensus       100 ~~~s~lg~~l~~~~~~~~l~~~~~~~~~~~~~~~vslRS~~~~~~v~~iA~~~-----gGGGH~~AaG~~~~~~~~~~~~  174 (192)
                      ...+.+++.+..+.   .. +  ++++.. +  ++|.||.++ +|+.++.+++     |||||+.|||++++.+.++++.
T Consensus       342 GViGIVAsrl~e~~---~r-P--~iv~a~-~--kgSaRSi~g-~nl~~~L~~~~~ll~~gGGH~~AAG~si~~~~l~~f~  411 (666)
T 2zxr_A          342 GVMGIVASRILEAT---LR-P--VFLVAQ-G--KGTVRSLAP-ISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFK  411 (666)
T ss_dssp             HHHHHHHHHHHHHH---CS-C--EEEEET-T--EEEEECCTT-CCHHHHHHHTGGGCSEEEECSSEEEEECCGGGHHHHH
T ss_pred             ccHHHHHHHHHHHh---CC-C--EEEEEC-C--EEEEECCCC-ccHHHHHHHHHhhCcccCCChHHcccccCcccHHHHH
Confidence            33445555554443   22 2  344442 3  899999874 9999998887     8999999999999876666555


Q ss_pred             h
Q 029510          175 S  175 (192)
Q Consensus       175 ~  175 (192)
                      .
T Consensus       412 ~  412 (666)
T 2zxr_A          412 A  412 (666)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*

Probab=80.04  E-value=2.6  Score=35.38  Aligned_cols=43  Identities=7%  Similarity=-0.110  Sum_probs=26.5

Q ss_pred             HHHHHHhCccccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHH
Q 029510            4 VLKYIEDMDLRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLL   48 (192)
Q Consensus         4 lv~~i~d~Dlwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~   48 (192)
                      +.++++..+ +......++.+++++  ||..|.+ ..++++.++   +|.
T Consensus       123 v~~~~~~~~-~~i~~~~A~~L~~gI~~DT~~F~~-~~tt~~d~~aa~~L~  170 (309)
T 2haw_A          123 LNKMYKENN-VKIEKEIAGLMLSAIISDSLLFKS-PTCTDQDVAAAKELA  170 (309)
T ss_dssp             HHHHHHHTT-CCCCHHHHHHHHHHHHHHHTTTTS-TTCCHHHHHHHHHHH
T ss_pred             HHHHHHHcC-CCCCHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHH
Confidence            345666655 444444566677777  8998887 345565543   565

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1ir6a_	385	Exonuclease RecJ {Thermus thermophilus [TaxId: 274	97.99

>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Exonuclease RecJ
domain: Exonuclease RecJ
species: Thermus thermophilus [TaxId: 274]

Probab=97.99  E-value=9e-06  Score=69.88  Aligned_cols=67  Identities=12%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             ccchhHHHHHHHHhhhccCCccceEEEEEECCeEEEEEecCCCCCCHHHHHhh----C-CCCCcccccCcccChhhHHHH
Q 029510           99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKA----Y-GGGGSASSSSFIIRMDEYNQW  173 (192)
Q Consensus        99 ~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~~~~~~vslRS~~~~~~v~~iA~~----~-gGGGH~~AaG~~~~~~~~~~~  173 (192)
                      +.....+++.+..+.   +- |  ++++. ++  |.|.||.++ +|+.++-++    + .||||+.||||+++.+.++++
T Consensus       293 ~GviGivAsrl~~~~---~k-P--~iv~~-~~--kGS~Rs~~g-~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F  362 (385)
T d1ir6a_         293 PGVMGIVASRILEAT---LR-P--VFLVA-QG--KGTVRSLAP-ISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAF  362 (385)
T ss_dssp             HHHHHHHHHHHHHHH---CS-C--EEEEE-TT--EEEEECCSS-CCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHH
T ss_pred             cchhhhhHHHHHHHc---CC-C--EEEEe-cC--eEEEeCCCC-CCHHHHHHHHhchhhcCCChhHcceEEEcHHHHHHH
Confidence            344455555555443   32 4  34444 44  789999875 999986332    3 399999999999998877777


Q ss_pred             hh
Q 029510          174 LS  175 (192)
Q Consensus       174 ~~  175 (192)
                      ..
T Consensus       363 ~~  364 (385)
T d1ir6a_         363 KA  364 (385)
T ss_dssp             HH
T ss_pred             HH
Confidence            64