Citrus Sinensis ID: 029511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHccccEEEEEccccccHHHEcHHHHccHHHHHHHHHHHHcHEEEcccccccHHHHHHcccccccEcEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
msqdttvdspessdgaslmsfdteltlglpgesrsparapafaqghkknctkrgFMETVIDLnlgtshismprgqnsesrvsgtgkypaakaqvtgwppvrsfrKKTLEGSSKLVKVAvdgapylrkvDLQIYSSYQDLFRALEEMFTCfttrgdynmEERKLTgalngreyvptyedkdddwmllgdvpwk
Flexible Loop (DISEMBL)
msqdttvdspessdgaslmSFDTELTLGLPGESRSPARAPAFaqghkknctkrGFMETVIDLNlgtshismprgqNSESRVSGTGKypaakaqvtgwppvrsfrkktlegssklvkvavdgapylrkVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKltgalngreyvptyedkdddwmllgdvpwk
Low Complexity Region (SEG)
MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK
Disordered region (IsUnstruct)
*************************************************CTKRGFMETVIDLNLG*****************************TGWPPVR*F****LEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD****
Disordered Region (DISOPRED)
**********************TELTLGL*************************************************************************************VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTR************ALNGREYVPTYEDKDDDWMLLGDVPWK
Disordered Region (DISEMBL)
***************ASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISM***********************TGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK
Disordered Region (DISPRO)
*****************LMSFDTELTLGLPG**********************************************************AKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
O24407	236	Auxin-responsive protein	yes	no	0.864	0.703	0.441	9e-35
Q38832	228	Auxin-responsive protein	no	no	0.838	0.706	0.445	1e-33
Q38825	243	Auxin-responsive protein	no	no	0.833	0.658	0.447	1e-33
Q38826	321	Auxin-responsive protein	no	no	0.994	0.595	0.377	1e-32
P93830	229	Auxin-responsive protein	no	no	0.822	0.689	0.429	1e-31
P49679	189	Auxin-induced protein IAA	N/A	no	0.812	0.825	0.430	1e-31
Q5VRD1	199	Auxin-responsive protein	yes	no	0.510	0.492	0.65	1e-31
Q38827	338	Auxin-responsive protein	no	no	0.942	0.535	0.381	2e-31
Q9ZSY8	305	Auxin-responsive protein	no	no	0.994	0.626	0.368	4e-31
O24542	193	Auxin-induced protein 22D	N/A	no	0.723	0.720	0.431	4e-30

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  146 bits (368), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 119/213 (55%), Gaps = 47/213 (22%)

Query: 18  LMSFD-TELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETV-IDLNLGTSHISMPRGQ 75
           +++F+ TEL LGLPG +     A        KN  KRGF ETV + LNL ++ +      
Sbjct: 1   MINFEATELRLGLPGGNHGGEMA-------GKNNGKRGFSETVDLKLNLSSTAMDSVSKV 53

Query: 76  NSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTL-----------EGSSK----------- 113
           + E+      K P AKAQV GWPPVRSFRK  +           EG+ K           
Sbjct: 54  DLENMKEKVVK-PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSA 112

Query: 114 -------LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN-------ME 159
                   VKV++DGAPYLRK+DL++Y +YQDL  AL +MF+ FT  G+Y        M 
Sbjct: 113 SACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI-GNYGPQGMKDFMN 171

Query: 160 ERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK 192
           E KL   LNG +YVPTYEDKD DWML+GDVPW+
Sbjct: 172 ESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 113/200 (56%), Gaps = 39/200 (19%)

Query: 22  DTELTLGLPGESR---SPARAPAFAQGHKKNCTKRGFMETV-IDLNLGTS---HISM-PR 73
           +TEL LGLPG +    SPA++            KRGF ETV + LNL ++   H+ +   
Sbjct: 5   ETELCLGLPGGTETVESPAKSGV--------GNKRGFSETVDLKLNLQSNKQGHVDLNTN 56

Query: 74  GQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLE---------------GSSKLVKVA 118
           G   E         P AKAQV GWPPVR++RK  +                G+   VKV+
Sbjct: 57  GAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVS 116

Query: 119 VDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN-------MEERKLTGALNGRE 171
           +DGAPYLRKVDL++Y+SY+DL  AL +MF+ FT  G Y        M E K+   LN  E
Sbjct: 117 MDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTM-GSYGAQGMIDFMNESKVMDLLNSSE 175

Query: 172 YVPTYEDKDDDWMLLGDVPW 191
           YVP+YEDKD DWML+GDVPW
Sbjct: 176 YVPSYEDKDGDWMLVGDVPW 195

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 114/210 (54%), Gaps = 50/210 (23%)

Query: 23  TELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETV-IDLNLGTSHISMPRGQNSESRV 81
           TEL LGLPG + +       A G     +KRGF ETV + LNL ++      G      V
Sbjct: 11  TELCLGLPGGAEAVESPAKSAVG-----SKRGFSETVDLMLNLQSNK----EGSVDLKNV 61

Query: 82  SGTGK---------YPAAKAQVTGWPPVRSFRKKTL----------EGSSK--------- 113
           S   K          P AKAQV GWPPVR++RK  +          E SS+         
Sbjct: 62  SAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGA 121

Query: 114 ----LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN-------MEERK 162
               LVKV++DGAPYLRKVDL++Y SYQDL  AL +MF+ FT  G+Y        M E K
Sbjct: 122 AGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM-GNYGAQGMIDFMNESK 180

Query: 163 LTGALNGREYVPTYEDKDDDWMLLGDVPWK 192
           L   LN  EYVP+YEDKD DWML+GDVPW+
Sbjct: 181 LMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/262 (37%), Positives = 131/262 (50%), Gaps = 71/262 (27%)

Query: 1   MSQDTTVDSPESSD--GASLMSFD-TELTLGLPGESRSPARAPAFA-------------- 43
           +S  ++VDS    +  G S ++F  TEL LGLP ES+SP R   F               
Sbjct: 27  LSDCSSVDSSTIPNVVGKSNLNFKATELRLGLP-ESQSPERETDFGLLSPRTPDEKLLFP 85

Query: 44  -----------QGHKKNCT--KRGFMETVIDLNL---------GTSHISMPRGQNSESRV 81
                       GHK   +  KRGF +T  + +          G + +  P+ ++    +
Sbjct: 86  LLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSI 145

Query: 82  S--------GTGKYPAAKAQVTGWPPVRSFRKKTLEGSSK---------------LVKVA 118
                    G    PAAKAQV GWPP+RS+RK T+  S+                 VKV+
Sbjct: 146 QEERSHAKGGLNNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVS 205

Query: 119 VDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFT--------TRGDYNMEERKLTGALNGR 170
           +DGAPYLRKVDL+ Y+SYQ L  ALE+MF+CFT         +G   M E KL   L+G 
Sbjct: 206 MDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGS 265

Query: 171 EYVPTYEDKDDDWMLLGDVPWK 192
           E+V TYEDKD DWML+GDVPW+
Sbjct: 266 EFVLTYEDKDGDWMLVGDVPWE 287

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 107/198 (54%), Gaps = 40/198 (20%)

Query: 22  DTELTLGLPG-ESRSPARAPAFAQGHKKNCTKRGFMETV-IDLNLG---------TSHIS 70
           +TEL LGLPG ++ +P               KRGF ETV + LNL          T+H  
Sbjct: 11  ETELCLGLPGGDTVAPVTG-----------NKRGFSETVDLKLNLNNEPANKEGSTTHDV 59

Query: 71  MPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSK---------LVKVAVDG 121
           +      +S        P AKAQV GWPPVRS+RK  +    K          VKV++DG
Sbjct: 60  VTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDG 119

Query: 122 APYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN--------MEERKLTGALNGREYV 173
           APYLRK+DL++Y SY +L  AL  MF+ FT  G +         M ERKL   +N  +YV
Sbjct: 120 APYLRKIDLRMYKSYDELSNALSNMFSSFTM-GKHGGEEGMIDFMNERKLMDLVNSWDYV 178

Query: 174 PTYEDKDDDWMLLGDVPW 191
           P+YEDKD DWML+GDVPW
Sbjct: 179 PSYEDKDGDWMLVGDVPW 196

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49679|IAA4_PEA Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 97/172 (56%), Gaps = 16/172 (9%)

Query: 23  TELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESRVS 82
           TEL LGLPG +    +         KN  KR   +T          +S+ +  N E  V 
Sbjct: 6   TELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQT------SEESVSISKVTNDEHIVE 59

Query: 83  GTGKYPAAKAQVTGWPPVRSFRKKTLEGS---SKLVKVAVDGAPYLRKVDLQIYSSYQDL 139
            +   P AKA++ GWPP+RS+RK +L  +      VKV++DGAPYLRK+DL++Y  Y +L
Sbjct: 60  SSSAAPPAKAKIVGWPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSEL 119

Query: 140 FRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPW 191
            +ALE MF    T G+Y+  E        G EY PTYEDKD DWML+GDVPW
Sbjct: 120 LKALETMFKL--TIGEYSERE-----GYKGSEYAPTYEDKDGDWMLVGDVPW 164

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Pisum sativum (taxid: 3888)

>sp|Q5VRD1|IAA1_ORYSJ Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 75/100 (75%), Gaps = 2/100 (2%)

Query: 93  QVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTT 152
           +V GWPPVRSFRK  L  ++K VKVAVDGAPYLRKVDL+ YS Y  L RAL++ F    T
Sbjct: 76  RVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFT 133

Query: 153 RGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK 192
              +  +ERKL  A+NG EYVPTYEDKD DWML+GDVPWK
Sbjct: 134 IRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 129/257 (50%), Gaps = 76/257 (29%)

Query: 9   SPESSDGASLMSFD-TELTLGLPGESRSPAR--------------APAF----------- 42
           SP + D  + +S   TELTLGLPG S+SPAR               P F           
Sbjct: 51  SPLAEDDKATISLKATELTLGLPG-SQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICS 109

Query: 43  -AQGHKKNCTKRGFMETVIDLNLGTSHI------------------------SMPRGQNS 77
            +Q +  +  KRGF +T+       S +                        ++P+GQ+S
Sbjct: 110 SSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSS 169

Query: 78  ESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSK--------------LVKVAVDGAP 123
            +  S +    AAKAQ+ GWPPVRS+RK TL  + K               VKV++DGAP
Sbjct: 170 TTNNSSSPP--AAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAP 227

Query: 124 YLRKVDLQIYSSYQDLFRALEEMFTCFT--------TRGDYNMEERKLTGALNGREYVPT 175
           YLRKVDL+ Y++Y +L  ALE+MFT FT          G   + E KL   LNG++YV T
Sbjct: 228 YLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLT 287

Query: 176 YEDKDDDWMLLGDVPWK 192
           YEDKD DWML+GDVPW+
Sbjct: 288 YEDKDGDWMLVGDVPWE 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 124/255 (48%), Gaps = 64/255 (25%)

Query: 1   MSQDTTVDSPESSDGASLMSFD-TELTLGLPGESRSPARAPA-FAQGHKKNC----TKRG 54
           M   T  D  ++ D  + ++F  TEL LGLPG S SP R  + F   +K +C     KR 
Sbjct: 20  MEATTMSDKTKTRDNNNGLNFKATELRLGLPG-SESPERVDSRFLALNKSSCPVSGAKRV 78

Query: 55  FMETVIDLNL-----GTSHISMPRGQNSESRVS---------------------GTGKYP 88
           F + + D N      G++  +   G  S  R S                      +   P
Sbjct: 79  FSDAINDSNKWVFSPGSTTATGDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAP 138

Query: 89  AAKAQVTGWPPVRSFRKKTLEGSSK-----------------------LVKVAVDGAPYL 125
           A+KAQV GWPP+RSFRK ++  S                          VKV+++GAPYL
Sbjct: 139 ASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYL 198

Query: 126 RKVDLQIYSSYQDLFRALEEMFTCFTTR--------GDYNMEERKLTGALNGREYVPTYE 177
           RK+DL+ Y SY +L  ALE+MF+CFT          G   + E +LT  L G EYV TYE
Sbjct: 199 RKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYE 258

Query: 178 DKDDDWMLLGDVPWK 192
           DKD DWML+GDVPW+
Sbjct: 259 DKDSDWMLVGDVPWE 273

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24542|AX22D_VIGRR Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1

 Score =  130 bits (328), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 97/183 (53%), Gaps = 44/183 (24%)

Query: 23  TELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESRVS 82
           TEL LGLPG      RA A +        KR                S P   + ES  +
Sbjct: 17  TELRLGLPGSDEPEKRATARS-------NKR----------------SSPEASDEESISN 53

Query: 83  GT------GKYPAAKAQVTGWPPVRSFRKKTL--------EGSSKLVKVAVDGAPYLRKV 128
           G+         P AKAQV GWPP+RS+RK  +        EG+   VKV++ GAPYLRK+
Sbjct: 54  GSDVTKEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKI 113

Query: 129 DLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD 188
           DL++Y SY +L +ALE MF C    G+Y+  E       NG EY PTYEDKD DWML+GD
Sbjct: 114 DLKVYKSYPELLKALENMFKCIF--GEYSERE-----GYNGSEYAPTYEDKDGDWMLVGD 166

Query: 189 VPW 191
           VPW
Sbjct: 167 VPW 169

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
255552973	217	Auxin-responsive protein IAA1, putative	0.916	0.811	0.535	2e-45
224058755	220	predicted protein [Populus trichocarpa]	0.890	0.777	0.553	4e-44
50404477	211	IAA type protein [Elaeis guineensis]	0.927	0.843	0.564	3e-43
429326562	220	hypothetical protein [Populus tomentosa]	0.890	0.777	0.548	4e-43
297738881	216	unnamed protein product [Vitis vinifera]	0.937	0.833	0.528	9e-43
225445356	224	PREDICTED: auxin-responsive protein IAA7	0.937	0.803	0.528	1e-42
297743325	294	unnamed protein product [Vitis vinifera]	0.880	0.574	0.530	7e-41
147815558	210	hypothetical protein VITISV_010217 [Viti	0.880	0.804	0.530	1e-40
359482959	210	PREDICTED: auxin-responsive protein IAA1	0.880	0.804	0.530	2e-40
110631502	192	AUX/IAA-like protein [Pelargonium x hort	0.828	0.828	0.512	1e-39

>gi|255552973|ref|XP_002517529.1| Auxin-responsive protein IAA1, putative [Ricinus communis] gi|223543161|gb|EEF44693.1| Auxin-responsive protein IAA1, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 131/198 (66%), Gaps = 22/198 (11%)

Query: 1   MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVI 60
           MS ++ +  PES D A++   +TELTL LPGESR        A    K  TKRG+++TV 
Sbjct: 1   MSPESGIHLPES-DTATMNFTETELTLALPGESR------VSADNGAKIGTKRGYLQTV- 52

Query: 61  DLNLGTSH-------ISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSK 113
           DLNLG+          +MP    S    S   K P +KAQV GWPPVR++RK  ++ SSK
Sbjct: 53  DLNLGSCSSDCGNKDCNMPENDVS----SAPKKPPVSKAQVVGWPPVRAYRKNAMK-SSK 107

Query: 114 LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYV 173
            VKVAVDGAPYLRKVDL++Y+SYQ L  ALE+MF+CFT R   N  ERK+   +NG EYV
Sbjct: 108 FVKVAVDGAPYLRKVDLEMYNSYQQLLTALEDMFSCFTIRNYLN--ERKIMDQVNGVEYV 165

Query: 174 PTYEDKDDDWMLLGDVPW 191
           PTYEDKD DWM++GDVPW
Sbjct: 166 PTYEDKDGDWMMVGDVPW 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058755|ref|XP_002299625.1| predicted protein [Populus trichocarpa] gi|118485628|gb|ABK94664.1| unknown [Populus trichocarpa] gi|222846883|gb|EEE84430.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 127/186 (68%), Gaps = 15/186 (8%)

Query: 13  SDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLG-TSHISM 71
           SD A++   +TELTLGLPGESR  A         +K   KRGF+ETV DLNLG +S++  
Sbjct: 12  SDAANVSFKETELTLGLPGESRGLALI-------EKTSGKRGFLETV-DLNLGRSSNVDS 63

Query: 72  PRGQ---NSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKV 128
              +    SE+ V  T K PAAKAQV GWPPVR++RK  ++ S K VKVAVDGAPYLRKV
Sbjct: 64  DHNKYSGESETDVPNTAKPPAAKAQVVGWPPVRAYRKNAMK-SCKYVKVAVDGAPYLRKV 122

Query: 129 DLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLT--GALNGREYVPTYEDKDDDWMLL 186
           DL++Y+SYQ L  AL++MF+CF+      + ER +      NG EYVPTYEDKD DWM+L
Sbjct: 123 DLEMYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYEDKDGDWMML 182

Query: 187 GDVPWK 192
           GDVPWK
Sbjct: 183 GDVPWK 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50404477|gb|AAT76903.1| IAA type protein [Elaeis guineensis]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 125/193 (64%), Gaps = 15/193 (7%)

Query: 1   MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVI 60
           MS DT   S ES + + L   +TEL LGLPG SR+     A ++  KK    RGF ETV 
Sbjct: 1   MSTDTGRSSTES-EVSGLDYEETELKLGLPGGSRT-----AGSETEKK----RGFAETV- 49

Query: 61  DLNLGTSHISMPRGQNSESRV-SGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAV 119
           DL+LG    S   G  S     SG GK PA KAQV GWPPVRSFRK  L+ S   VKVAV
Sbjct: 50  DLSLGAESRSGDLGDRSTGDFGSGAGKPPAVKAQVVGWPPVRSFRKNALK-SCTYVKVAV 108

Query: 120 DGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDK 179
           DGAPYLRKVDL++Y  YQ    A+E+MF+CFT R   N  ER+L   +NG EYVPTYEDK
Sbjct: 109 DGAPYLRKVDLEMYGGYQQFLTAIEDMFSCFTVRNCPN--ERRLVDPVNGTEYVPTYEDK 166

Query: 180 DDDWMLLGDVPWK 192
           D DWML+GDVPWK
Sbjct: 167 DGDWMLVGDVPWK 179

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326562|gb|AFZ78621.1| hypothetical protein [Populus tomentosa]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/186 (54%), Positives = 126/186 (67%), Gaps = 15/186 (8%)

Query: 13  SDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLG-TSHISM 71
           SD A++   +TELTLGLPGESR  A         +K   KRGF+ETV DLNLG +S++  
Sbjct: 12  SDAANVSFKETELTLGLPGESRGLALI-------EKTSGKRGFLETV-DLNLGRSSNVDS 63

Query: 72  PRGQ---NSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKV 128
              +    SE+ V  T K PAAKAQV GWPPVR++RK  ++G  K VKVAVDGAPYLRKV
Sbjct: 64  DHHKYSGESETDVPNTAKPPAAKAQVVGWPPVRAYRKNAMKGC-KYVKVAVDGAPYLRKV 122

Query: 129 DLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLT--GALNGREYVPTYEDKDDDWMLL 186
           DL++Y+SYQ L  AL++MF+CF+      + ER +      NG EYVPTY DKD DWM+L
Sbjct: 123 DLEMYNSYQQLLNALQDMFSCFSFTIRNYLNERTIMEQEVNNGVEYVPTYGDKDGDWMML 182

Query: 187 GDVPWK 192
           GDVPWK
Sbjct: 183 GDVPWK 188

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738881|emb|CBI28126.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 125/195 (64%), Gaps = 15/195 (7%)

Query: 1   MSQDTTVDSPESSDGASLMSF-DTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETV 59
           M  +T   SP+S  G + MS  DTELTLGLPGE++          G  K+C+KRG+ +TV
Sbjct: 1   MPSNTADQSPDS--GTTGMSLKDTELTLGLPGEAQV-----VIVGG--KSCSKRGYSDTV 51

Query: 60  ---IDLNLGTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVK 116
                   G S     +       +SG GK P +KAQV GWPPVRS RKK L+ S K VK
Sbjct: 52  DFRFRCCSGESSAKAEKVDWPGKEISGPGKAPDSKAQVVGWPPVRSVRKKALK-SCKYVK 110

Query: 117 VAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY 176
           VAVDGAPYLRKVDL+++ SYQ L  ALE MF CFT   + ++EE K+   +NG EYVPTY
Sbjct: 111 VAVDGAPYLRKVDLEVHRSYQQLLMALETMFDCFTISSN-DLEESKIMNPVNGAEYVPTY 169

Query: 177 EDKDDDWMLLGDVPW 191
           EDKD DWML+GDVPW
Sbjct: 170 EDKDGDWMLVGDVPW 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445356|ref|XP_002284861.1| PREDICTED: auxin-responsive protein IAA7-like [Vitis vinifera]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 125/195 (64%), Gaps = 15/195 (7%)

Query: 1   MSQDTTVDSPESSDGASLMSF-DTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETV 59
           M  +T   SP+S  G + MS  DTELTLGLPGE++          G  K+C+KRG+ +TV
Sbjct: 9   MPSNTADQSPDS--GTTGMSLKDTELTLGLPGEAQV-----VIVGG--KSCSKRGYSDTV 59

Query: 60  ---IDLNLGTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVK 116
                   G S     +       +SG GK P +KAQV GWPPVRS RKK L+ S K VK
Sbjct: 60  DFRFRCCSGESSAKAEKVDWPGKEISGPGKAPDSKAQVVGWPPVRSVRKKALK-SCKYVK 118

Query: 117 VAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY 176
           VAVDGAPYLRKVDL+++ SYQ L  ALE MF CFT   + ++EE K+   +NG EYVPTY
Sbjct: 119 VAVDGAPYLRKVDLEVHRSYQQLLMALETMFDCFTISSN-DLEESKIMNPVNGAEYVPTY 177

Query: 177 EDKDDDWMLLGDVPW 191
           EDKD DWML+GDVPW
Sbjct: 178 EDKDGDWMLVGDVPW 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743325|emb|CBI36192.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 122/196 (62%), Gaps = 27/196 (13%)

Query: 1   MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVI 60
           MS      SPESS  A L   DTELTLGLPG ++S               TKRGF +TV 
Sbjct: 85  MSPQLPKPSPESSS-AGLYFNDTELTLGLPGATKS--------------GTKRGFSDTV- 128

Query: 61  DLNL----GTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVK 116
            LNL     T H S P    SE+ VSG  K P AK Q+ GWPPV++ RK   +  SK VK
Sbjct: 129 GLNLRGPCNTDHASNP----SENDVSGDSKPPPAKTQIVGWPPVKASRKNVAK-ISKYVK 183

Query: 117 VAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY 176
           VAVDGAPYLRKVDL++Y SYQ L  +LE+MF+CF  R   N  ERKL   + G +Y+PTY
Sbjct: 184 VAVDGAPYLRKVDLEMYGSYQQLLGSLEDMFSCFPIRNYLN--ERKLMDPVKGSDYMPTY 241

Query: 177 EDKDDDWMLLGDVPWK 192
           ED+D DWML+GDVPWK
Sbjct: 242 EDRDGDWMLVGDVPWK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815558|emb|CAN70529.1| hypothetical protein VITISV_010217 [Vitis vinifera]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 122/196 (62%), Gaps = 27/196 (13%)

Query: 1   MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVI 60
           MS      SPESS  A L   DTELTLGLPG ++S               TKRGF +TV 
Sbjct: 1   MSPQLPKPSPESS-SAGLYFNDTELTLGLPGATKS--------------GTKRGFSDTVX 45

Query: 61  DLNL----GTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVK 116
            LNL     T H S P    SE+ VSG  K P AK Q+ GWPPV++ RK   +  SK VK
Sbjct: 46  -LNLRGPCNTDHASNP----SENDVSGDSKPPPAKTQIVGWPPVKASRKNVAK-ISKYVK 99

Query: 117 VAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY 176
           VAVDGAPYLRKVDL++Y SYQ L  +LE+MF+CF  R   N  ERKL   + G +Y+PTY
Sbjct: 100 VAVDGAPYLRKVDLEMYGSYQQLLGSLEDMFSCFPIRNYLN--ERKLMDPVKGSDYMPTY 157

Query: 177 EDKDDDWMLLGDVPWK 192
           ED+D DWML+GDVPWK
Sbjct: 158 EDRDGDWMLVGDVPWK 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482959|ref|XP_002280524.2| PREDICTED: auxin-responsive protein IAA17-like [Vitis vinifera]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 122/196 (62%), Gaps = 27/196 (13%)

Query: 1   MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVI 60
           MS      SPESS  A L   DTELTLGLPG ++S               TKRGF +TV 
Sbjct: 1   MSPQLPKPSPESS-SAGLYFNDTELTLGLPGATKS--------------GTKRGFSDTV- 44

Query: 61  DLNL----GTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVK 116
            LNL     T H S P    SE+ VSG  K P AK Q+ GWPPV++ RK   +  SK VK
Sbjct: 45  GLNLRGPCNTDHASNP----SENDVSGDSKPPPAKTQIVGWPPVKASRKNVAK-ISKYVK 99

Query: 117 VAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY 176
           VAVDGAPYLRKVDL++Y SYQ L  +LE+MF+CF  R   N  ERKL   + G +Y+PTY
Sbjct: 100 VAVDGAPYLRKVDLEMYGSYQQLLGSLEDMFSCFPIRNYLN--ERKLMDPVKGSDYMPTY 157

Query: 177 EDKDDDWMLLGDVPWK 192
           ED+D DWML+GDVPWK
Sbjct: 158 EDRDGDWMLVGDVPWK 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110631502|gb|ABG81096.1| AUX/IAA-like protein [Pelargonium x hortorum]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 119/193 (61%), Gaps = 34/193 (17%)

Query: 1   MSQDTTVDSPESSDGASLMSF-DTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETV 59
           MS +     PES  G   M+F DTELTLGLPG+SR                TKRGF E  
Sbjct: 1   MSPENGKHLPESDVGD--MNFNDTELTLGLPGDSRG---------------TKRGFSEA- 42

Query: 60  IDLNLGTSHISMPRGQNSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAV 119
           ID++             +++ +SG+ K P  K QV GWPPV++ RK  +  + K VKVAV
Sbjct: 43  IDID------------KTKTSISGSAKSPP-KTQVVGWPPVKASRKSVVARNCKYVKVAV 89

Query: 120 DGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDK 179
           DGAPYLRKVDL++Y SYQ L  ALEE+F+C T R   N  ERKL   +NG EYVPTYEDK
Sbjct: 90  DGAPYLRKVDLEMYGSYQQLLEALEELFSCLTIRNCLN--ERKLMDLVNGVEYVPTYEDK 147

Query: 180 DDDWMLLGDVPWK 192
           D DWML+GDVPWK
Sbjct: 148 DGDWMLVGDVPWK 160

Source: Pelargonium x hortorum

Species: Pelargonium x hortorum

Genus: Pelargonium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
UNIPROTKB|Q5VRD1	199	IAA1 "Auxin-responsive protein	0.593	0.572	0.618	1.7e-38
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.401	0.326	0.6	3.1e-37
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.406	0.320	0.616	1.5e-33
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.645	0.532	0.511	2.6e-32
UNIPROTKB|Q6AT10	212	IAA15 "Auxin-responsive protei	0.921	0.834	0.440	7.7e-32
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.406	0.293	0.546	8.8e-32
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	0.833	0.846	0.435	6.9e-31
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.869	0.732	0.417	1e-29
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.406	0.255	0.558	2.9e-29
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.880	0.737	0.406	1e-27

UNIPROTKB|Q5VRD1 IAA1 "Auxin-responsive protein IAA1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 362 (132.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 73/118 (61%), Positives = 85/118 (72%)

Query:    76 NSESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSS 135
             NS    +     PA KA+V GWPPVRSFRK  L  ++K VKVAVDGAPYLRKVDL+ YS 
Sbjct:    59 NSSPLAAAADAPPAPKARVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSG 116

Query:   136 YQDLFRALEE-MFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK 192
             Y  L RAL++  F+ FT R  +  +ERKL  A+NG EYVPTYEDKD DWML+GDVPWK
Sbjct:   117 YDQLLRALQDKFFSHFTIR-KFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 51/85 (60%), Positives = 63/85 (74%)

Query:   115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN-------MEERKLTGAL 167
             VKV++DGAPYLRK+DL++Y +YQDL  AL +MF+ FT  G+Y        M E KL   L
Sbjct:   121 VKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI-GNYGPQGMKDFMNESKLIDLL 179

Query:   168 NGREYVPTYEDKDDDWMLLGDVPWK 192
             NG +YVPTYEDKD DWML+GDVPW+
Sbjct:   180 NGSDYVPTYEDKDGDWMLVGDVPWE 204

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 53/86 (61%), Positives = 63/86 (73%)

Query:   114 LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN-------MEERKLTGA 166
             LVKV++DGAPYLRKVDL++Y SYQDL  AL +MF+ FT  G+Y        M E KL   
Sbjct:   126 LVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM-GNYGAQGMIDFMNESKLMNL 184

Query:   167 LNGREYVPTYEDKDDDWMLLGDVPWK 192
             LN  EYVP+YEDKD DWML+GDVPW+
Sbjct:   185 LNSSEYVPSYEDKDGDWMLVGDVPWE 210

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 306 (112.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 67/131 (51%), Positives = 84/131 (64%)

Query:    69 ISMPRGQNSESRVSGT---GKYPAAKAQVTGWPPVRSFRKKTLEGSSK---LVKVAVDGA 122
             +SM R  +  S V+      K  A KAQV GWPPVRSFRK  L    K   LVKV++DGA
Sbjct:    73 MSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGA 132

Query:   123 PYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGAL-NGREYVPTYEDKDD 181
             PYLRK+D+ +Y SY +L  A + MFT FT     + ++ K +  L +  EYVPTYEDKD 
Sbjct:   133 PYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDG 192

Query:   182 DWMLLGDVPWK 192
             DWML+GDVPW+
Sbjct:   193 DWMLVGDVPWE 203

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT10 IAA15 "Auxin-responsive protein IAA15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 89/202 (44%), Positives = 111/202 (54%)

Query:     1 MSQDTTVDSPESSDGASLMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVI 60
             MS +T   S ESS  + L   DT LTL LPG S S + + + +     +   R       
Sbjct:     1 MSVETERSSTESSAASGLDFEDTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATD 60

Query:    61 DLNLGTSHISMPRGQNSESRVSGTGKY--PAAKAQVTGWPPVRSFRKKTL-------EGS 111
             D              + ++R+  T     P+ KA+V GWPPVR+FRK  L          
Sbjct:    61 D--------------DPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSK 106

Query:   112 SKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEE-MFTCFTTRGDYNMEERKLTGALNGR 170
             +K VKVAVDGAPYLRKVDL+ Y  Y  L  AL++  F+ FT R   N EE KL  A++G 
Sbjct:   107 AKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGN-EEMKLVDAVSGN 165

Query:   171 EYVPTYEDKDDDWMLLGDVPWK 192
             EYVPTYEDKD DWML+GDVPWK
Sbjct:   166 EYVPTYEDKDGDWMLVGDVPWK 187

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 238 (88.8 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 47/86 (54%), Positives = 63/86 (73%)

Query:   115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTT-RGDYN-------MEERKLTGA 166
             VKV++DGAPYLRKVDL++Y +Y++L  ALE+MF+CFT   G+ N       + + +L   
Sbjct:   149 VKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDL 208

Query:   167 LNGREYVPTYEDKDDDWMLLGDVPWK 192
              NG E V TYEDKD+DWML+GDVPW+
Sbjct:   209 KNGTELVLTYEDKDEDWMLVGDVPWR 234

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/177 (43%), Positives = 101/177 (57%)

Query:    19 MSFD-TELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNS 77
             M F  TEL LGLPG +    +         KN  KR   +T          +S+ +  N 
Sbjct:     1 MEFKATELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQT------SEESVSISKVTND 54

Query:    78 ESRVSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSK---LVKVAVDGAPYLRKVDLQIYS 134
             E  V  +   P AKA++ GWPP+RS+RK +L  +      VKV++DGAPYLRK+DL++Y 
Sbjct:    55 EHIVESSSAAPPAKAKIVGWPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYG 114

Query:   135 SYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPW 191
              Y +L +ALE MF    T G+Y+  ER+      G EY PTYEDKD DWML+GDVPW
Sbjct:   115 GYSELLKALETMFKL--TIGEYS--ERE---GYKGSEYAPTYEDKDGDWMLVGDVPW 164

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 81/194 (41%), Positives = 110/194 (56%)

Query:    22 DTELTLGLPGESRSPARAPAFAQ-GHKKNCTKRGFMETVIDLNLGTSHISM-PRGQNSES 79
             +TEL LGLPG + +   +PA +  G+K+  ++   ++  +  N    H+ +   G   E 
Sbjct:     5 ETELCLGLPGGTET-VESPAKSGVGNKRGFSETVDLKLNLQSNK-QGHVDLNTNGAPKEK 62

Query:    80 RVSGTGKYPAAKAQVTGWPPVRSFRKKTLE---------------GSSKLVKVAVDGAPY 124
                     P AKAQV GWPPVR++RK  +                G+   VKV++DGAPY
Sbjct:    63 TFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPY 122

Query:   125 LRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN-------MEERKLTGALNGREYVPTYE 177
             LRKVDL++Y+SY+DL  AL +MF+ FT  G Y        M E K+   LN  EYVP+YE
Sbjct:   123 LRKVDLKMYTSYKDLSDALAKMFSSFTM-GSYGAQGMIDFMNESKVMDLLNSSEYVPSYE 181

Query:   178 DKDDDWMLLGDVPW 191
             DKD DWML+GDVPW
Sbjct:   182 DKDGDWMLVGDVPW 195

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query:   115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTR--GDYN------MEERKLTGA 166
             VKV+++GAPYLRK+DL+ Y SY +L  ALE+MF+CFT    G +       + E +LT  
Sbjct:   188 VKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDL 247

Query:   167 LNGREYVPTYEDKDDDWMLLGDVPWK 192
             L G EYV TYEDKD DWML+GDVPW+
Sbjct:   248 LRGSEYVVTYEDKDSDWMLVGDVPWE 273

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 76/187 (40%), Positives = 99/187 (52%)

Query:    22 DTELTLGLPG-ESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESR 80
             +TEL LGLPG ++ +P            +  K        +    T+H  +      +S 
Sbjct:    11 ETELCLGLPGGDTVAPVTGNKRGFSETVDL-KLNLNNEPANKEGSTTHDVVTFDSKEKSA 69

Query:    81 VSGTGKYPAAKAQVTGWPPVRSFRKKTLEGSSK---------LVKVAVDGAPYLRKVDLQ 131
                    P AKAQV GWPPVRS+RK  +    K          VKV++DGAPYLRK+DL+
Sbjct:    70 CPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLR 129

Query:   132 IYSSYQDLFRALEEMFTCFTTR---GDYNM----EERKLTGALNGREYVPTYEDKDDDWM 184
             +Y SY +L  AL  MF+ FT     G+  M     ERKL   +N  +YVP+YEDKD DWM
Sbjct:   130 MYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWM 189

Query:   185 LLGDVPW 191
             L+GDVPW
Sbjct:   190 LVGDVPW 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I9550 SubName- Full=Putative uncharacterized protein; (220 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-60

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  185 bits (472), Expect = 4e-60
 Identities = 85/173 (49%), Positives = 99/173 (57%), Gaps = 15/173 (8%)

Query: 22  DTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPRGQNSESRV 81
            TEL LGLPG S   +              KRGF E   D   G S              
Sbjct: 5   ATELRLGLPGGSEPESEP----STSSVTSNKRGFSEVTED---GISSSLGEDKSTISVSS 57

Query: 82  SGTGKYPAAKAQVTGWPPVRSFRKKTLEG--SSKLVKVAVDGAPYLRKVDLQIYSSYQDL 139
           +G    P AKAQV GWPPVRS+RK +L    S   VKV++DGAPYLRKVDL++Y SY +L
Sbjct: 58  NGDSAKPPAKAQVVGWPPVRSYRKNSLREKKSGSYVKVSMDGAPYLRKVDLKMYKSYDEL 117

Query: 140 FRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK 192
             ALE+MF+CFT      + E  L   LNG EYVPTYEDKD DWML+GDVPW+
Sbjct: 118 SSALEKMFSCFT------IGESGLLDLLNGSEYVPTYEDKDGDWMLVGDVPWE 164

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.27
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.15
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.1
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.83
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.51
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.3
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.06
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.71
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.69
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.59
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.38
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.92
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	91.27

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1.5e-56  Score=377.55  Aligned_cols=173  Identities=47%  Similarity=0.756  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCCCCCccccccccccCCCCCCcchhhcccCCCCCCCCCC------CCC-----CCCCCCCCCC
Q 029511           18 LMSFDTELTLGLPGESRSPARAPAFAQGHKKNCTKRGFMETVIDLNLGTSHISMPR------GQN-----SESRVSGTGK   86 (192)
Q Consensus        18 l~~~~TELRLGLPG~~~~~~~~~~~~~~~~~~~~KR~fset~~d~~~~~~~~~~~~------~~~-----~~~~~~~~~~   86 (192)
                      |||++|||||||||+.... ............++||+|++++ +............      ...     ..........
T Consensus         1 ln~~~TELrLGLPG~~~~~-~~~~~~~~~~~~~~kR~F~~ai-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPD-ASSSSSSKKSSSGNKRGFSEAI-DSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSS   78 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCC-cccccccccccCcccccchhhh-hhcccccccccccccccCcccccccccccccccccCC
Confidence            7999999999999985321 0001122345778899999987 5443100000000      000     0000112233


Q ss_pred             CCCcCCcccccCCCCccccccccC-----CCceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcc--hh
Q 029511           87 YPAAKAQVTGWPPVRSFRKKTLEG-----SSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYN--ME  159 (192)
Q Consensus        87 ~p~~k~qvVGWPPvrs~rkn~~~~-----~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~--~~  159 (192)
                      .|++++|+||||||++||||.+..     .++||||+|||+||||||||++|+||++|+.+|++||.+|.|..|.+  .+
T Consensus        79 ~p~~~~~~vgwpp~~s~r~n~~~~~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~  158 (215)
T PF02309_consen   79 PPASKAQVVGWPPVRSFRKNSLSEKQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN  158 (215)
T ss_dssp             -------BTTBS----S---------------------------------------------------------------
T ss_pred             CCcccccccCCCcccccccccccccccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence            466789999999999999998762     57999999999999999999999999999999999999988875533  33


Q ss_pred             hhhhhCCCCCCCeEEEEEeCCCCeeeccCCCCC
Q 029511          160 ERKLTGALNGREYVPTYEDKDDDWMLLGDVPWK  192 (192)
Q Consensus       160 e~~l~d~~~~~~~~ltYeDkeGDwMLVGDvPWe  192 (192)
                      |..+.++.++++|+|||||+||||||||||||+
T Consensus       159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~  191 (215)
T PF02309_consen  159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWE  191 (215)
T ss_dssp             ---------------------------------
T ss_pred             chhhccccCCcceeEEEECCCCCEEEecCCCHH
Confidence            445666777889999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.27  E-value=0.0011  Score=47.08  Aligned_cols=55  Identities=27%  Similarity=0.404  Sum_probs=45.9

Q ss_pred             eEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511          114 LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG  187 (192)
Q Consensus       114 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG  187 (192)
                      -|||.-.|. +-|.+.+..--+|.+|...++..|+.   .               ...+.+.|.|.||||..+-
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~---~---------------~~~~~l~Y~D~dgD~V~i~   57 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL---L---------------DEDFQLKYKDEDGDLVTIS   57 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT---S---------------TSSEEEEEEETTSSEEEES
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC---C---------------CccEEEEeeCCCCCEEEeC
Confidence            489999997 44468888888999999999999993   1               3478999999999998875

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.15  E-value=0.0017  Score=49.14  Aligned_cols=57  Identities=25%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             eEEEEEcCCcccceeecC---CCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511          114 LVKVAVDGAPYLRKVDLQ---IYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG  187 (192)
Q Consensus       114 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG  187 (192)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|.   +.              ...+|+|.|-|.||||..+-
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~--------------~~~~~~l~Y~Dedgd~V~l~   61 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LS--------------PDADLSLTYTDEDGDVVTLV   61 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CC--------------CCCcEEEEEECCCCCEEEEc
Confidence            489999998544455553   46799999999999998   32              23589999999999998764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.10  E-value=0.0023  Score=47.45  Aligned_cols=54  Identities=20%  Similarity=0.360  Sum_probs=43.2

Q ss_pred             eEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          114 LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       114 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      =|||...|.  .+.+-|..--+|++|...+.++|.   +.              +...|.|-|.|.||||.++
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~---~~--------------~~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFK---LD--------------DMSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhC---CC--------------CCCeeEEEEECCCCCeEEe
Confidence            389999987  445555556699999999999999   22              1358999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=96.83  E-value=0.0063  Score=43.22  Aligned_cols=54  Identities=24%  Similarity=0.403  Sum_probs=43.6

Q ss_pred             EEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeeccC
Q 029511          115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD  188 (192)
Q Consensus       115 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVGD  188 (192)
                      |||.-.|  --|.+-+..--+|.+|...+.+.|..   .               ...+.|.|.|.||||..+.+
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~---~---------------~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGL---D---------------NQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCC---C---------------CCCeEEEEECCCCCEEEecC
Confidence            7887754  36788888899999999999999982   1               24689999999999987653

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.51  E-value=0.0093  Score=44.60  Aligned_cols=52  Identities=13%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             EEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       115 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      |||.-.|.-+--+++-+..-+|.+|...+.++|+   +.                 .+.|.|-|.||||.++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---l~-----------------~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG---LN-----------------DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC---CC-----------------cceeEEEcCCCCEEEE
Confidence            7999999977778888778899999999999999   21                 4689999999999886

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.30  E-value=0.023  Score=39.96  Aligned_cols=55  Identities=25%  Similarity=0.386  Sum_probs=43.1

Q ss_pred             eEEEEEcCCcccceeecC-CCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeeccC
Q 029511          114 LVKVAVDGAPYLRKVDLQ-IYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD  188 (192)
Q Consensus       114 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVGD  188 (192)
                      -|||+-.|.  -|.+=+. .--+|.+|...|.+.|..   .               ...+.+.|.|.||||..+.+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~---~---------------~~~~~l~y~D~e~d~v~l~s   57 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGL---D---------------AVSFKLKYPDEDGDLVTISS   57 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCC---C---------------CCcEEEEeeCCCCCEEEeCC
Confidence            378888875  4555555 888999999999999992   1               14679999999999987764

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.06  E-value=0.019  Score=43.26  Aligned_cols=52  Identities=21%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             EEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeee
Q 029511          115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWML  185 (192)
Q Consensus       115 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwML  185 (192)
                      ||++-.|.-+--.+|.  .-+|++|.+.+..||.. .                .+..|++.|.|.|||---
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-~----------------~~q~ft~kw~DEEGDp~t   54 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-H----------------NDQPFTLKWIDEEGDPCT   54 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-C----------------CCCcEEEEEECCCCCcee
Confidence            7999999866666666  77899999999999992 1                345799999999999643

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.71  E-value=0.028  Score=42.39  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=37.8

Q ss_pred             CcccceeecC--CCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          122 APYLRKVDLQ--IYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       122 ~pigRKVDL~--~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      +|-||-+=++  ...|+.+|..++.+=|+   +...            ....|.|.|.|.||||.|.
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~---~d~~------------~~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLG---DDDF------------ETHLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhC---Cccc------------cCCcccEEEEcCCCCEEEE
Confidence            4566655444  47899999999999988   2211            1357899999999999986

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.69  E-value=0.055  Score=40.89  Aligned_cols=57  Identities=19%  Similarity=0.419  Sum_probs=43.1

Q ss_pred             ceEEEEEcC---Ccccceeec--CCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          113 KLVKVAVDG---APYLRKVDL--QIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       113 ~~VKV~MdG---~pigRKVDL--~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      +.||.+..|   .+=-|++-|  ....+|++|...+.++|..  +               .+..|.+.|.|.|||..-+
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--l---------------~~~~ftlky~DeeGDlvtI   62 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--L---------------RGKNFQLFWKDEEGDLVAF   62 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--c---------------CCCcEEEEEECCCCCEEee
Confidence            368888877   344455555  6667999999999999972  1               2468999999999998644

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.59  E-value=0.034  Score=41.69  Aligned_cols=54  Identities=19%  Similarity=0.327  Sum_probs=40.4

Q ss_pred             EEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       115 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      ||..-|..=-=-.+|.....+|+++..-|+.||.   |.               +..|+|-|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~---l~---------------~~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH---IP---------------NVDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC---CC---------------CCcEEEEEeCCCCCEecc
Confidence            6666666522224555566999999999999998   33               347899999999998754

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.38  E-value=0.087  Score=39.55  Aligned_cols=57  Identities=18%  Similarity=0.425  Sum_probs=41.0

Q ss_pred             EEEEEcCCcccceeecCCCC-CHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeeccC
Q 029511          115 VKVAVDGAPYLRKVDLQIYS-SYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD  188 (192)
Q Consensus       115 VKV~MdG~pigRKVDL~~~~-sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVGD  188 (192)
                      +|+.-.|.  -|++=+..-. +|.+|...+++.|.. .+.              ....+.+.|.|.|||+.-+-+
T Consensus         3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~-~~~--------------~~~~flIKYkD~dGDlVTIts   60 (81)
T cd06401           3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRG-KLG--------------SSDDVLIKYKDEDGDLITIFD   60 (81)
T ss_pred             EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcc-ccC--------------CcccEEEEEECCCCCEEEecc
Confidence            67777665  3555444433 999999999999992 111              235789999999999976643

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.92  E-value=0.1  Score=39.36  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             EEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          115 VKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       115 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      -||+-.|.  .|++....-=+|..|.+.|+.+|.   |..              . .+.|+|.|.|||..-+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~---lp~--------------~-~~~vtYiDeD~D~ITl   54 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYN---LPE--------------I-KVGVTYIDNDNDEITL   54 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhC---CCh--------------h-HeEEEEEcCCCCEEEe
Confidence            47888886  789988888999999999999999   321              1 2799999999998654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=91.27  E-value=0.89  Score=34.39  Aligned_cols=54  Identities=20%  Similarity=0.307  Sum_probs=43.9

Q ss_pred             ceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeeccC
Q 029511          113 KLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD  188 (192)
Q Consensus       113 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVGD  188 (192)
                      .=|||+-.|.  .|-|-+..--+|++|...+..+|+   +.                ..+.|-|.|. ||..-+++
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~---~~----------------~~~~iKykDE-GD~iti~s   56 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFG---FK----------------RRLKIKMKDD-GDMITMGD   56 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhC---CC----------------CceEEEEEcC-CCCccccC
Confidence            4589998888  667777777789999999999998   21                2679999999 99877665

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.43
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.98
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.6
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.58
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	86.08
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	82.42

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.43  E-value=0.0056  Score=45.26  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             CceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          112 SKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       112 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      ..=|||+-.|.-  |.+.+..--+|++|...|..+|.   +.              .+..+++.|.|.|||+.-+
T Consensus         6 ~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~---~~--------------~~~~f~lky~DEeGD~iti   61 (89)
T 1vd2_A            6 QVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCS---FD--------------NEQLFTMKWIDEEGDPCTV   61 (89)
T ss_dssp             CEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTT---CC--------------SSCCEEEEECCSSSCCEEC
T ss_pred             eEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhC---CC--------------CCCeEEEEEECCCCCcccc
Confidence            356888999984  45555556799999999999999   21              2457899999999998643

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.98  E-value=0.017  Score=42.62  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             CceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          112 SKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       112 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      ..-||..-|+.--=-.||-....+|++|..-|+++|.   +.               ...|++.|.|.|||++-.
T Consensus         6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~---L~---------------~~~f~i~Y~D~dGDLlpI   62 (86)
T 1wmh_B            6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ---IP---------------GLDVLLGYTDAHGDLLPL   62 (86)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT---CT---------------TCCCEEEEECTTSCEEEC
T ss_pred             EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC---CC---------------CCCEEEEEECCCCCEeee
Confidence            3457888887733335555677899999999999998   22               246899999999999754

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.60  E-value=0.021  Score=43.10  Aligned_cols=58  Identities=16%  Similarity=0.253  Sum_probs=43.1

Q ss_pred             CceEEEEEcCC----cccceeecCC-----------CCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEE
Q 029511          112 SKLVKVAVDGA----PYLRKVDLQI-----------YSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY  176 (192)
Q Consensus       112 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltY  176 (192)
                      +.-||++..|.    .=-|++-|..           -.+|++|...++++|..  +               .+..|.|.|
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~--l---------------~~~~f~l~Y   67 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA--L---------------RPGGFQAHY   67 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT--S---------------CSSCEEEEE
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc--c---------------CCCcEEEEE
Confidence            46789998762    3456665542           14899999999999983  1               245799999


Q ss_pred             EeCCCCeeec
Q 029511          177 EDKDDDWMLL  186 (192)
Q Consensus       177 eDkeGDwMLV  186 (192)
                      .|.|||+.-+
T Consensus        68 ~DedGDlIti   77 (102)
T 2kkc_A           68 RAERGDLVAF   77 (102)
T ss_dssp             ECTTCCEEEE
T ss_pred             ECCCCCEEEe
Confidence            9999998654

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.58  E-value=0.026  Score=43.77  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=43.7

Q ss_pred             cccccccCCCceEEEEEcCC----cccceeecCC-----------CCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCC
Q 029511          103 FRKKTLEGSSKLVKVAVDGA----PYLRKVDLQI-----------YSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGAL  167 (192)
Q Consensus       103 ~rkn~~~~~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~  167 (192)
                      |--|.++.+..-||++..|.    .=-|++-|..           -.+|++|...++++|..  +               
T Consensus        11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~--L---------------   73 (117)
T 2ktr_A           11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA--L---------------   73 (117)
T ss_dssp             ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT--S---------------
T ss_pred             eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc--c---------------
Confidence            33444555678999999752    2346665541           35999999999999972  1               


Q ss_pred             CCCCeEEEEEeCCCCeeec
Q 029511          168 NGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       168 ~~~~~~ltYeDkeGDwMLV  186 (192)
                      .+..|+|.|.|.|||+.-+
T Consensus        74 ~~~~f~l~YkDEdGDlItI   92 (117)
T 2ktr_A           74 RPGGFQAHYRAERGDLVAF   92 (117)
T ss_dssp             CSSCEEEEEECTTCCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEe
Confidence            2457999999999998654

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=86.08  E-value=2.7  Score=31.45  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=45.1

Q ss_pred             CceEEEEEcCC------cccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeee
Q 029511          112 SKLVKVAVDGA------PYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWML  185 (192)
Q Consensus       112 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwML  185 (192)
                      +.-|||+-+..      .=.|.|=+..--+|++|...+.+-|..+.  +.         +.  .....|-|+|.|||+..
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~--~~---------~i--~~~~klkYkDEdGD~Vt   71 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH--NN---------NI--SPITKIKYQDEDGDFVV   71 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC--SS---------CC--CCCCCEEEECSSSCEEE
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc--cc---------cc--cceeEEEEEcCCCCEEE
Confidence            35678887642      12366667788899999999999998321  10         01  23468999999999988


Q ss_pred             ccC
Q 029511          186 LGD  188 (192)
Q Consensus       186 VGD  188 (192)
                      .++
T Consensus        72 l~s   74 (98)
T 1q1o_A           72 LGS   74 (98)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            775

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=82.42  E-value=2.2  Score=32.50  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             ecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          129 DLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       129 DL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      ||..--.|.+|+.-..+-|..                    .+-+|-|.|.|||+.-+
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~--------------------~DIaLNYrD~eGDLIri   65 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQR--------------------EDIALNYRDAEGDLVRL   65 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCC--------------------SSEEEEEECTTSCEEEC
T ss_pred             ccccCCCHHHHHHHHHHHhcc--------------------cceeeeeecCCCCEEEE
Confidence            577788999999999999983                    13378899999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.77
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.67
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	87.11

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0012  Score=46.95  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=46.4

Q ss_pred             ceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511          113 KLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG  187 (192)
Q Consensus       113 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG  187 (192)
                      .=|||...|..+=-+|-+..-.+|.+|...|...|+   ++                 .+.|.|.|.|+||.++.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~---l~-----------------~~~lkY~Ddd~e~v~l~   59 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---LN-----------------TIQIKYLDEENEEVSIN   59 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---CS-----------------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC---cc-----------------cceEEEEcCCCCEEEEe
Confidence            458999999866667877788999999999999998   32                 26899999999999875

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0081  Score=41.69  Aligned_cols=55  Identities=9%  Similarity=0.065  Sum_probs=42.5

Q ss_pred             CCceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511          111 SSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG  187 (192)
Q Consensus       111 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG  187 (192)
                      .+.=|||+..+.-+  .+=|..--+|.+|...+.+.|+.   +                 .++|-|.|.||||..+-
T Consensus        11 ~~ikVKv~~~~D~~--~~~l~~~it~~dL~~kI~~rf~~---~-----------------~~~lkY~Dedgd~v~i~   65 (85)
T d1ip9a_          11 KTTKIKFYYKDDIF--ALMLKGDTTYKELRSKIAPRIDT---D-----------------NFKLQTKLFDGSGEEIK   65 (85)
T ss_dssp             CCEEEEECBTTCCE--EEEECSCCCHHHHHHHHHHHHTS---S-----------------CEEEEECCSSSCCSCCC
T ss_pred             CCEEEEEEECCcEE--EEEeCCCCCHHHHHHHHHHHhCC---C-----------------ceEEEEEcCCCCEEEEe
Confidence            34678898888844  44445567899999999999972   1                 37999999999997654

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.83  Score=31.67  Aligned_cols=42  Identities=21%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             eeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511          127 KVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL  186 (192)
Q Consensus       127 KVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV  186 (192)
                      .+|.....+|+++..-|+.|-.   |.               +.+++|.|.|.+||.+-.
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~---l~---------------~~~f~i~Y~D~hgDLLPI   58 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQ---IP---------------GLDVLLGYTDAHGDLLPL   58 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTT---CT---------------TCCCEEEEECTTSCEEEC
T ss_pred             eeccccccCHHHHHHHHHHHcC---CC---------------CCcEEEEEecCCCCcccc
Confidence            5777888999999999999966   32               357899999999999754