Citrus Sinensis ID: 029535
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 192 | 2.2.26 [Sep-21-2011] | |||||||
| Q58FX0 | 207 | BON1-associated protein 2 | yes | no | 0.645 | 0.599 | 0.331 | 3e-08 | |
| Q941L2 | 192 | BON1-associated protein 1 | no | no | 0.682 | 0.682 | 0.305 | 4e-06 |
| >sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 21/145 (14%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EI ++SA+GLK R + TY + D+ + ++VD+ GG P W
Sbjct: 10 LEIEVISAEGLKVD---------RKPLKKKTY--SVVRIDEKS--WASKVDELGGSYPIW 56
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTL-LGWCQIPVNDI--GFPPGGSVRN 117
D+F + NA + R+ I +++Y +T SG+ +G+ +IPV D GF P G +
Sbjct: 57 KDRFDMEMPINA--SVRF--ISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQGHLNF 112
Query: 118 LSYRLRARDGSRGHGVVNLAIKLEP 142
LSYRLR G + G+VN++I ++P
Sbjct: 113 LSYRLRDEYGDK-CGIVNVSIMVKP 136
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Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q941L2|BAP1_ARATH BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EI + SA+GLK RP T A D+ C ++ +D+ NPTW
Sbjct: 20 LEIDLRSAEGLKLNR--------RPIKKKTF---AVVKIDEKCR--KSNLDESRRSNPTW 66
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGSVRNL 118
K +P + N F I+++++ +T +G +IP ND + P G + L
Sbjct: 67 NYKSEMPINGNEQF------IFIEVFYRTGSGHDKKIGEAKIPTNDFMGRYSPEGHLNFL 120
Query: 119 SYRLRARDGSRGHGVVNLAIKLEPVVPDTSLDAC 152
SYRLR G + G+VNL+I L P AC
Sbjct: 121 SYRLRDEFGDKC-GIVNLSI-LVKSDPTRDYGAC 152
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Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 192 | ||||||
| 255537351 | 223 | conserved hypothetical protein [Ricinus | 0.729 | 0.627 | 0.666 | 3e-51 | |
| 224053953 | 175 | predicted protein [Populus trichocarpa] | 0.838 | 0.92 | 0.585 | 2e-48 | |
| 147852113 | 246 | hypothetical protein VITISV_009284 [Viti | 0.786 | 0.613 | 0.583 | 8e-46 | |
| 359474245 | 230 | PREDICTED: BON1-associated protein 2-lik | 0.817 | 0.682 | 0.550 | 2e-45 | |
| 351726802 | 176 | uncharacterized protein LOC100306532 [Gl | 0.734 | 0.801 | 0.456 | 9e-22 | |
| 388521219 | 156 | unknown [Lotus japonicus] | 0.692 | 0.852 | 0.368 | 1e-12 | |
| 125553895 | 225 | hypothetical protein OsI_21469 [Oryza sa | 0.677 | 0.577 | 0.302 | 3e-10 | |
| 326513286 | 211 | predicted protein [Hordeum vulgare subsp | 0.703 | 0.639 | 0.312 | 6e-08 | |
| 242094506 | 249 | hypothetical protein SORBIDRAFT_10g00177 | 0.703 | 0.542 | 0.283 | 1e-07 | |
| 326529465 | 263 | predicted protein [Hordeum vulgare subsp | 0.661 | 0.482 | 0.298 | 1e-06 |
| >gi|255537351|ref|XP_002509742.1| conserved hypothetical protein [Ricinus communis] gi|223549641|gb|EEF51129.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 114/141 (80%), Gaps = 1/141 (0%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPA-TTSGDKHCHVYRTRVDDHGGVNPT 59
MEIT+LSA+GLK+TS FS R+RPFVT+TTY P + DK+C V+ TR+DD GG NPT
Sbjct: 1 MEITVLSAEGLKSTSSRPFSHRLRPFVTLTTYQPVPCNTTDKNCQVFTTRIDDQGGANPT 60
Query: 60 WGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLS 119
WGDKF+VP D FANRY+CIY++LYTK L+ G+ LLGWCQIPV DIGFPP SVR+LS
Sbjct: 61 WGDKFHVPMDAATLFANRYSCIYVELYTKRLLKGKVLLGWCQIPVTDIGFPPDSSVRHLS 120
Query: 120 YRLRARDGSRGHGVVNLAIKL 140
YR+R RDG+RG G++NLAIKL
Sbjct: 121 YRIRDRDGTRGQGIINLAIKL 141
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053953|ref|XP_002298055.1| predicted protein [Populus trichocarpa] gi|222845313|gb|EEE82860.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 125/176 (71%), Gaps = 15/176 (8%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
MEIT++SAQGLK TS FS R+RPF+TIT YPP + ++ C +YRTRVDD GG NPTW
Sbjct: 1 MEITVISAQGLKKTSSGPFSHRLRPFITITAYPPNPHNSNEKCQMYRTRVDDQGGENPTW 60
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
GDKF+VP D AFF NRY+CIY+ LYTK I+GQ LGWCQ+PV DIGF GS++ LSY
Sbjct: 61 GDKFHVPID-TAFFQNRYSCIYVHLYTKRPITGQVQLGWCQVPVTDIGFLSEGSLKYLSY 119
Query: 121 RLRARDGSRGHGVVNLAIKLE-----PVVPDT--SLDACHVIGIPL-------ICQ 162
R+ ARDG+R GVVNLAI+L V+PD+ S + VIGIP+ ICQ
Sbjct: 120 RILARDGTRTPGVVNLAIRLTSFQQVAVLPDSRASAECKTVIGIPVTMFSHTSICQ 175
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852113|emb|CAN82266.1| hypothetical protein VITISV_009284 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/161 (58%), Positives = 116/161 (72%), Gaps = 10/161 (6%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPAT---TSGDKHCHVYRTRVDDHGGVN 57
+EITI+SA+GLKNTS T FS RIRPF+T+TT PP T DK VY TRVDD GG+N
Sbjct: 11 IEITIVSAEGLKNTS-TFFSKRIRPFITLTTAPPTPYKPTGADKQSQVYMTRVDDEGGIN 69
Query: 58 PTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGSV 115
PTWGDKF +P + FF++RY+ IYL +YTK L+ G+ LGWCQIP DI GF P G++
Sbjct: 70 PTWGDKFRLPMEAT-FFSHRYSAIYLHIYTKRLMKGKIQLGWCQIPAGDILEGFSPAGTL 128
Query: 116 RNLSYRLRARDGSRGHGVVNLAIKLE---PVVPDTSLDACH 153
R+LSYRLR RDG+RGHG+VN+A++LE PV D H
Sbjct: 129 RHLSYRLRDRDGTRGHGIVNVAVRLEGSFPVFQQRPADPGH 169
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474245|ref|XP_003631424.1| PREDICTED: BON1-associated protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 121/178 (67%), Gaps = 21/178 (11%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPAT---TSGDKHCHVYRTRVDDHGGVN 57
+EITI+SA+GLKNTS T FS RIRPF+T+TT PP T DK VY TRVDD GG+N
Sbjct: 11 IEITIVSAEGLKNTS-TFFSKRIRPFITLTTAPPTPYKPTGADKQSQVYMTRVDDEGGIN 69
Query: 58 PTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGSV 115
PTWGDKF +P + FF++RY+ IYL +YTK L+ G+ LGWCQIP DI GF P G++
Sbjct: 70 PTWGDKFRLPMEAT-FFSHRYSAIYLHIYTKRLMKGKIQLGWCQIPAGDILEGFSPAGTL 128
Query: 116 RNLSYRLRARDGSRGHGVVNLAIKLE---PVVPDTSLDACH-----------VIGIPL 159
R+LSYRLR RDG+RGHG+VN+A++LE PV D H IGIP+
Sbjct: 129 RHLSYRLRDRDGTRGHGIVNVAVRLEGSFPVFQQRPADPGHTQLPAVDPSQMAIGIPV 186
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726802|ref|NP_001236371.1| uncharacterized protein LOC100306532 [Glycine max] gi|255628797|gb|ACU14743.1| unknown [Glycine max] | Back alignment and taxonomy information |
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Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 19/160 (11%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EI ++SA+GLK S + FS IRPF+T+T P H+ D+ G T
Sbjct: 9 LEICVVSAEGLKQQSSSYFSC-IRPFITLTKLP---------AHMVYHHYDEGG----TG 54
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
F VP D FF++ Y+ ++LQLY K +G T LG C IP +DI P SVR LSY
Sbjct: 55 EQVFRVPVD-PTFFSDTYSRLHLQLYNKRRFAGLTQLGSCLIPPSDIALQPYHSVRYLSY 113
Query: 121 RLRARDGSRGHGVVNLAIKLEPVVPDTSLDACH-VIGIPL 159
RLRA+DGSR H VNL+I+L PD LD C VIGIP+
Sbjct: 114 RLRAKDGSRTHLTVNLSIRLHG-SPD--LDTCQPVIGIPV 150
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388521219|gb|AFK48671.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 80/163 (49%), Gaps = 30/163 (18%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EI+++S +GL S + F +T+T + + Y D GG
Sbjct: 4 LEISMVSVEGLGKYSSSYF-------ITLTNLS------NHLVYSY-----DGGGAEE-- 43
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGF---PPGGSVRN 117
F VP D FF +++ + L LY K I G T LGWC IP DIGF +VR
Sbjct: 44 -HMFRVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRY 102
Query: 118 LSYRLRARDGSRGHGVVNLAIKLEPVVPDTSLDACH-VIGIPL 159
LSYRLRA DG R ++NL++KL S D C VIGIP+
Sbjct: 103 LSYRLRATDGCRSDIIINLSVKLLG-----SPDTCQTVIGIPV 140
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125553895|gb|EAY99500.1| hypothetical protein OsI_21469 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 19/149 (12%)
Query: 1 MEITILSAQGLK---NTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVN 57
+E+T+LSA+ L+ + ++L R+RP+VT+++ A ++ V +H
Sbjct: 31 LEVTVLSAESLRLPPPSYYSLIPRRLRPYVTVSSAASACST-----DVAAAASGEH---- 81
Query: 58 PTWGDKFYVPTDCNAFFANRYACIYLQLYTKT---LISGQTLLGWCQIPVNDI--GFPPG 112
+W D VP + +++ +Y++ L+ G T LGWC+IP D+ G P
Sbjct: 82 -SWNDTLVVPVGAEFLESRGGGGVHVAVYSEPACRLVGGATPLGWCRIPAADVLDGLRPP 140
Query: 113 GSVRNLSYRLR-ARDGSRGHGVVNLAIKL 140
++R LSY LR R G GVV+LA+++
Sbjct: 141 RALRRLSYSLRCPRTGGPARGVVHLAVRV 169
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Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326513286|dbj|BAK06883.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 1 MEITILSAQGLK-NTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPT 59
+E+T+LSA+ L+ +++ R+RP+V +++ ++++G C R G + +
Sbjct: 20 LEVTVLSAESLRLPPTYSPLPRRLRPYVAVSSSSSSSSAG---CSTGVARASSGAGEH-S 75
Query: 60 WGDKFYVPTDCNAFFANR---YACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGS 114
W D V F R + + L+ G T LGWC++P D+ G P S
Sbjct: 76 WEDARLVVPVGAGFLEGRDDVRVAVISESGCARLV-GDTPLGWCRVPAADVLDGLRPPRS 134
Query: 115 VRNLSYRLR-ARDGSRGHGVVNLAIKL 140
+R LSY LR R G GHGVV+LA+++
Sbjct: 135 LRRLSYTLRCPRRGGPGHGVVHLAVRV 161
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Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242094506|ref|XP_002437743.1| hypothetical protein SORBIDRAFT_10g001770 [Sorghum bicolor] gi|241915966|gb|EER89110.1| hypothetical protein SORBIDRAFT_10g001770 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 20/155 (12%)
Query: 1 MEITILSAQGLK-NTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPT 59
+E+T+LSA L+ S++ R+RP+VT+++ ++ +H
Sbjct: 30 LEVTVLSADSLRLPPSYSPLPRRLRPYVTVSSSDAPGSACSTAVAAGSGGGGEHA----- 84
Query: 60 WGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGSVRN 117
WGD VP A + + + + G T LGWC IP D+ G P ++R
Sbjct: 85 WGDTLVVPVGAGFLEARAHVHVSVLSEPACRLVGATPLGWCGIPAADVLDGLRPPRALRR 144
Query: 118 LSYRLR------------ARDGSRGHGVVNLAIKL 140
LSY LR A + GHGVV+LA+++
Sbjct: 145 LSYSLRCPRRAAGGGAPAAGTPAWGHGVVHLAVRV 179
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Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326529465|dbj|BAK04679.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 17/144 (11%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+E+T++SA+ LK T+FS ++R + ++ + GD +RT D HGG NP W
Sbjct: 6 LEVTLISAKDLKKV--TVFS-KMRVYAVVSI-----SGGDPRTPTHRTHSDRHGGRNPMW 57
Query: 61 GD--KFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGSVR 116
+F +PT + R +++ L + G +G +PV D+ PP G R
Sbjct: 58 HAPLRFPIPTAADP----RGLALHVLLRAERSF-GDRDVGEVLVPVQDLASAAPPAGEHR 112
Query: 117 NLSYRLRARDGSRGHGVVNLAIKL 140
+LSY++R+ R GV++++ L
Sbjct: 113 HLSYQVRSPMSGRKRGVLHISYSL 136
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Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 192 | ||||||
| TAIR|locus:2050782 | 207 | BAP2 "AT2G45760" [Arabidopsis | 0.479 | 0.444 | 0.37 | 6.6e-10 | |
| TAIR|locus:2098931 | 192 | BAP1 "BON association protein | 0.682 | 0.682 | 0.311 | 6.1e-07 | |
| TAIR|locus:2041654 | 401 | AT2G13350 "AT2G13350" [Arabido | 0.463 | 0.221 | 0.290 | 0.00069 | |
| TAIR|locus:2124933 | 250 | AT4G01200 "AT4G01200" [Arabido | 0.630 | 0.484 | 0.271 | 0.00087 |
| TAIR|locus:2050782 BAP2 "AT2G45760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 37/100 (37%), Positives = 60/100 (60%)
Query: 46 YRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTL-LGWCQIPV 104
+ ++VD+ GG P W D+F + NA + R+ I +++Y +T SG+ +G+ +IPV
Sbjct: 42 WASKVDELGGSYPIWKDRFDMEMPINA--SVRF--ISIEVYYRTSGSGRDKNVGYAKIPV 97
Query: 105 NDI--GFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142
D GF P G + LSYRLR G + G+VN++I ++P
Sbjct: 98 TDFMGGFAPQGHLNFLSYRLRDEYGDKC-GIVNVSIMVKP 136
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| TAIR|locus:2098931 BAP1 "BON association protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 48/154 (31%), Positives = 77/154 (50%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EI + SA+GLK +R RP + T+ A D+ C ++ +D+ NPTW
Sbjct: 20 LEIDLRSAEGLK-------LNR-RP-IKKKTF--AVVKIDEKCR--KSNLDESRRSNPTW 66
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVND-IG-FPPGGSVRNL 118
K +P + N F I+++++ +T +G +IP ND +G + P G + L
Sbjct: 67 NYKSEMPINGNEQF------IFIEVFYRTGSGHDKKIGEAKIPTNDFMGRYSPEGHLNFL 120
Query: 119 SYRLRARDGSRGHGVVNLAIKLEPVVPDTSLDAC 152
SYRLR G + G+VNL+I ++ P AC
Sbjct: 121 SYRLRDEFGDKC-GIVNLSILVKSD-PTRDYGAC 152
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|
| TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 109 (43.4 bits), Expect = 0.00069, P = 0.00069
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 48 TRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI 107
TRVD+ GG +PTW DKF D A + + + + +++Y +G Q ++D+
Sbjct: 43 TRVDNTGGTSPTWNDKFVFRLDEEALY-DATSIVVIEIYALHWFK-DIHVGTVQALISDL 100
Query: 108 GFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140
P ++R ++ + G R HG++N+A+ L
Sbjct: 101 -VSPSSAMRFVTLEVLRASG-RPHGLLNIAVGL 131
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|
| TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 0.00087, P = 0.00087
Identities = 38/140 (27%), Positives = 69/140 (49%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EI ++SAQGLK + L R++ + ++ S K RTR+D G NP W
Sbjct: 7 LEINLISAQGLKEPTGKL--RRLQTYASVWV-----DSSSK----LRTRIDRIGSENPIW 55
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRN--- 117
DKF F ++ + + +++Y + L+G + V++ F P +V+
Sbjct: 56 NDKFVFQVSPE-FLSSETSGVSIEIYAVGYLRDH-LIGTVRFLVSN--FLPTAAVKVPSL 111
Query: 118 LSYRLRARDGSRGHGVVNLA 137
++ ++R R + HGV+N+A
Sbjct: 112 VALQIR-RPSGKFHGVLNIA 130
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.440 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 192 0.00096 110 3 11 22 0.44 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 598 (64 KB)
Total size of DFA: 171 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.22u 0.08s 16.30t Elapsed: 00:00:02
Total cpu time: 16.22u 0.08s 16.30t Elapsed: 00:00:02
Start: Sat May 11 01:01:18 2013 End: Sat May 11 01:01:20 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_I0951 | hypothetical protein (175 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 192 | |||
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-29 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-10 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-08 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-07 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-07 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-04 | |
| cd04016 | 121 | cd04016, C2_Tollip, C2 domain present in Toll-inte | 0.003 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 0.003 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-29
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+EITI+SA+ LKN + +++ + + P H T VD GG NPTW
Sbjct: 2 LEITIISAEDLKNVNL---FGKMKVYAVVWIDPS---------HKQSTPVDRDGGTNPTW 49
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI--GFPPGGSVRNL 118
+ P D R + +++Y + G L+G ++P+ D+ G P G +R L
Sbjct: 50 NETLRFPLDERLLQQGR-LALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFL 108
Query: 119 SYRLRARDGSRGHGVVNL 136
SY+LR G + GV+N
Sbjct: 109 SYQLRRPSG-KPQGVLNF 125
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-10
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ + I+SA+ L S P+V ++ +T+V + NP W
Sbjct: 2 LTVKIISARNLPPKDKGGKSD---PYVKVS-------LDGDPKEKKKTKVVKNTL-NPVW 50
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI 107
+ F A + +++Y K +G IP++D+
Sbjct: 51 NETFEFEVPPPEL-----AELEIEVYDKDRFGRDDFIGQVTIPLSDL 92
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-08
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ +T++ A+ L S P+V ++ ++T+V +NP W
Sbjct: 1 LRVTVIEARNLPAKDLNGKSD---PYVKVSLGGK---------QKFKTKVV-KNTLNPVW 47
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLS 119
+ F P + ++++ K S LG +IP++++ L
Sbjct: 48 NETFEFPVLDPE-----SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLP 101
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-07
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGD 62
I I+S Q L S + P+V + + ++T+V + G NP W +
Sbjct: 6 IKIISGQQL-PKPKGDKGSIVDPYVEVEIHGL----PADDSAKFKTKVVKNNGFNPVWNE 60
Query: 63 KFYVPTDCN--AFFANRYACIYLQLYTKTLISGQTLLGWCQIPVN 105
F AF + +Y + LG +P++
Sbjct: 61 TFEFDVTVPELAF-------LRFVVYDED-SGDDDFLGQACLPLD 97
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-07
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ +T++SA+ L S P+V ++ G + +T+V +NP W
Sbjct: 1 LRVTVISAKNLPPKDLNGKSD---PYVKVSL-------GGQKKDTKKTKV-VKNTLNPVW 49
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQ 101
+ F A + +++Y +G
Sbjct: 50 NETFTFEVTLPEL-----AELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 27/193 (13%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITT---YPPATTSGDKHCHVYRTRVDDHGGVN 57
+E+ I SA+GLK + T+ + + P++T+T +TRV +N
Sbjct: 438 VEVKIKSAEGLKKSDSTI-NGTVDPYITVTFSDRVIG------------KTRVK-KNTLN 483
Query: 58 PTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRN 117
P W + FY+ N+F + L LY ++G Q+ + + P +N
Sbjct: 484 PVWNETFYILL--NSFTDP----LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV--KKN 535
Query: 118 LSYRLRARDGSRGHGVVNLAIKLEPVVPDTSLDACHVIGIPLICQNRLGVNCEEESRLRN 177
Y ++ G + ++ PV+ D V + L V E L
Sbjct: 536 ELYEF--LRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDE 593
Query: 178 EREVSPTYGLNLT 190
L
Sbjct: 594 LSSKKDNKSAELY 606
|
Length = 1227 |
| >gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.003
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 26/136 (19%)
Query: 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGD 62
IT++ A+ +KN T R+ P+ I H VY T +G NP W
Sbjct: 6 ITVVQAKLVKNYGLT----RMDPYCRIRV---------GHA-VYETPTAYNGAKNPRWNK 51
Query: 63 KF--YVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+P ++ IY++++ + + + W I + + F G + Y
Sbjct: 52 TIQCTLPEGVDS--------IYIEIFDERAFTMDERIAWTHITIPESVF--NGETLDDWY 101
Query: 121 RLRARDGSRGHGVVNL 136
L + G G++NL
Sbjct: 102 SLSGKQGEDKEGMINL 117
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWG 61
+TI SA+GLK + + P+VT + ++ + RT+V NP W
Sbjct: 5 AVTIKSARGLKGSDI--IGGTVDPYVTFS-----ISNRRELA---RTKVKKDTS-NPVWN 53
Query: 62 DKFYV 66
+ Y+
Sbjct: 54 ETKYI 58
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 192 | |||
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.94 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.91 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.9 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.89 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.89 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.88 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.88 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.87 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.87 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.87 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.87 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.86 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.86 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.85 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.85 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.85 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.85 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.85 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.83 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.83 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.83 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.83 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.82 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.82 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.82 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.82 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.82 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.81 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.81 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.81 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.81 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.81 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.81 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.81 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.81 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.8 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.79 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.79 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.79 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.79 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.79 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.79 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.79 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.78 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.78 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.78 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.78 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.78 | |
| PLN03008 | 868 | Phospholipase D delta | 99.78 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.78 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.77 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.77 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.77 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.76 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.76 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.76 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.75 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.75 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.74 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.74 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.74 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.74 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.73 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.72 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.72 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.72 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.71 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.71 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.71 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.7 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.7 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.69 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.68 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.68 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.68 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.68 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.68 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.67 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.67 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.67 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.67 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.66 | |
| PLN02270 | 808 | phospholipase D alpha | 99.66 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.65 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.64 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.63 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.63 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.62 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.61 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.6 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.59 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.55 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.55 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.55 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.53 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 99.51 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.5 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.45 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.38 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.37 | |
| PLN02352 | 758 | phospholipase D epsilon | 99.36 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 99.35 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.33 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.27 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.27 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 99.22 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.21 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.09 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.88 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.86 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.6 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 98.54 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.4 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.23 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.96 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.8 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.69 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 97.62 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.54 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 97.54 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.47 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 97.37 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.35 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.25 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.18 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 96.95 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 96.9 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 96.87 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 96.77 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.7 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.64 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 96.47 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.27 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 96.01 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 95.97 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.73 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 95.71 | |
| cd08679 | 178 | C2_DOCK180_related C2 domains found in Dedicator O | 95.3 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 95.18 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 94.94 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 92.84 | |
| cd08696 | 179 | C2_Dock-C C2 domains found in Dedicator Of CytoKin | 92.73 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 91.83 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 91.22 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 89.91 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 89.23 | |
| PF14924 | 112 | DUF4497: Protein of unknown function (DUF4497) | 87.96 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 83.93 | |
| PF14186 | 147 | Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A | 82.8 |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=170.74 Aligned_cols=117 Identities=21% Similarity=0.456 Sum_probs=97.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ + +++||||++.+ + .+++||+++.+++.||+|||+|+|.+.+ . ...
T Consensus 4 L~v~v~~Ak~l~~~~---~-g~sDPYv~i~l------g----~~~~kT~v~~~~~~nP~WNe~F~f~v~~-~-----~~~ 63 (121)
T cd04016 4 LSITVVQAKLVKNYG---L-TRMDPYCRIRV------G----HAVYETPTAYNGAKNPRWNKTIQCTLPE-G-----VDS 63 (121)
T ss_pred EEEEEEEccCCCcCC---C-CCCCceEEEEE------C----CEEEEeEEccCCCCCCccCeEEEEEecC-C-----CcE
Confidence 789999999998875 4 48999999987 3 3688999998778999999999999976 2 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc-ccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND-IGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~-l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
|.|+|||++.+++|++||.+.|+|.+ +... .....||+|....|.+..|.|||+++|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g---~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNG---ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCC---CCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999999999999999999999974 5432 224569999876676678999999975
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=160.24 Aligned_cols=122 Identities=33% Similarity=0.602 Sum_probs=99.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||+|.+ ++ .++++|+++.+++.||.|||+|.|.+.+..+ ......
T Consensus 2 L~V~V~sA~~L~~~~--~~-~~~dpYv~v~~------~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~-~~~~~~ 68 (125)
T cd04051 2 LEITIISAEDLKNVN--LF-GKMKVYAVVWI------DP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLL-QQGRLA 68 (125)
T ss_pred EEEEEEEcccCCCCC--cc-cCCceEEEEEE------CC---CcccccccccCCCCCCCCCCEEEEEcChHhc-ccCccE
Confidence 789999999999987 34 48999999987 22 2578999987778999999999999977321 111258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC--CcceeEEEEEEeCCCCcccEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG--GSVRNLSYRLRARDGSRGHGVVNL 136 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~--~~~~~~~y~L~~~~G~k~~G~l~l 136 (192)
|.|+|||++.+++|++||++.|+|.++..... ...+..||+|.+++| +++|+|||
T Consensus 69 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 69 LTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred EEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 99999999987789999999999999975432 135678999999887 99999986
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=153.72 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=98.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||.|.+ + .+++||+++. ++.||.|||+|.|.+.+..... ...
T Consensus 2 L~V~vi~A~~L~~~d--~-~g~~dpyv~v~~------~----~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~--~~~ 65 (127)
T cd04022 2 LVVEVVDAQDLMPKD--G-QGSSSAYVELDF------D----GQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLS--NLV 65 (127)
T ss_pred eEEEEEEeeCCCCCC--C-CCCcCcEEEEEE------C----CEEecceeEc-CCCCCccceEEEEEccCHHHcc--CCe
Confidence 789999999999887 2 357999999976 2 2578999986 5899999999999987522111 247
Q ss_pred EEEEEEEccCCC-CCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC-CCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLIS-GQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD-GSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~-~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~-G~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+. +|++||++.|+|+++.. .+.....||+|.++. .++.+|+|+|.++|++
T Consensus 66 l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 66 LEVYVYNDRRSGRRRSFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred EEEEEeeCCCCcCCCCeeeEEEEcHHHcCC--CCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 999999998876 79999999999999972 234456799998753 2368999999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=153.19 Aligned_cols=124 Identities=23% Similarity=0.383 Sum_probs=95.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
++|+|++|++|+..+ . .+.+||||+|.+ + .+++||+++++ +.||+|||+|.|.+......+.....
T Consensus 1 ~~V~V~~A~~L~~~d--~-~g~~dpYv~v~l------~----~~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~ 66 (126)
T cd08682 1 VQVTVLQARGLLCKG--K-SGTNDAYVIIQL------G----KEKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRAT 66 (126)
T ss_pred CEEEEEECcCCcCCC--C-CcCCCceEEEEE------C----CeeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCE
Confidence 689999999999887 3 358999999976 2 25789999975 69999999999998762110011258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC--CcccEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG--SRGHGVVNLAIK 139 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G--~k~~G~l~l~v~ 139 (192)
|.|+|||++.+++|++||++.|+|+++.... +.....||+|....+ .+..|+|+|.++
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEEEEccccCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999998888999999999999996322 233457999985433 257899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=158.30 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=102.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ .+ +.+||||++.+ + .++.+|+++.+++.||+|||+|.|.+.+ .. ...
T Consensus 2 L~V~Vi~A~~L~~~d--~~-g~sDPYV~v~l------~----~~~~kTk~~~~~t~nP~WNE~F~f~v~~-~~----~~~ 63 (150)
T cd04019 2 LRVTVIEAQDLVPSD--KN-RVPEVFVKAQL------G----NQVLRTRPSQTRNGNPSWNEELMFVAAE-PF----EDH 63 (150)
T ss_pred EEEEEEEeECCCCCC--CC-CCCCeEEEEEE------C----CEEeeeEeccCCCCCCcccCcEEEEecC-cc----CCe
Confidence 789999999999988 34 58999999986 3 2688999987667999999999999876 21 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCC-CCCcceeEEEEEEeCCC-------CcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFP-PGGSVRNLSYRLRARDG-------SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~-~~~~~~~~~y~L~~~~G-------~k~~G~l~l~v~f~~~ 143 (192)
|.|+|+|++.+++|++||++.|||.++... ..+.....||+|.+..| .+.+|.|+|.+.|.+.
T Consensus 64 l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 64 LILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 999999998877899999999999999643 22344567999997653 3678999999999974
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=147.40 Aligned_cols=120 Identities=17% Similarity=0.385 Sum_probs=98.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ ...++|++.. ++.||.|||+|.|.+.+. ...
T Consensus 2 L~v~v~~a~~L~~~d--~~-g~~Dpyv~v~~------~~---~~~~kT~~~~-~t~nP~Wne~f~f~v~~~------~~~ 62 (121)
T cd04042 2 LDIHLKEGRNLAARD--RG-GTSDPYVKFKY------GG---KTVYKSKTIY-KNLNPVWDEKFTLPIEDV------TQP 62 (121)
T ss_pred eEEEEEEeeCCCCcC--CC-CCCCCeEEEEE------CC---EEEEEeeecc-CCCCCccceeEEEEecCC------CCe
Confidence 689999999999987 34 58999999975 32 3578999886 589999999999998651 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+++|++||.+.++|.++... .....||+|.++.+.+..|+|+|.+.|.|
T Consensus 63 l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 63 LYIKVFDYDRGLTDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEeCCCCCCCcceEEEEEEHHHcCCC---CCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999999988999999999999999743 22456899987655478999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=148.18 Aligned_cols=128 Identities=20% Similarity=0.440 Sum_probs=100.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+.. .++ ...+.+|++.+ ++.||.|||+|.|.+... . ..
T Consensus 2 L~v~Vi~a~~L~~~d--~~-~~~Dpyv~v~~~~~~--~~~-~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~----~--~~ 68 (133)
T cd04033 2 LRVKVLAGIDLAKKD--IF-GASDPYVKISLYDPD--GNG-EIDSVQTKTIK-KTLNPKWNEEFFFRVNPR----E--HR 68 (133)
T ss_pred EEEEEEEeECCCccc--CC-CCcCcEEEEEEECCC--CCC-cccceeeeEEc-CCCCCcEeeEEEEEEcCC----C--CE
Confidence 689999999999887 33 589999999875421 111 12367899886 589999999999998662 1 37
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC---CcceeEEEEEEeCC-CCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG---GSVRNLSYRLRARD-GSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~---~~~~~~~y~L~~~~-G~k~~G~l~l~v~f~ 141 (192)
|.|+|+|++.+++|++||.+.+++.++..... ......||+|..+. .++.+|+|+|++.|.
T Consensus 69 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 69 LLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99999999998889999999999999965322 23566799998653 237899999999984
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=149.58 Aligned_cols=113 Identities=20% Similarity=0.336 Sum_probs=91.4
Q ss_pred CEEEEEEeeC---CCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQG---LKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~---L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|+|+|++|++ |+..+ . .|.+||||++.+ + .++.||+++. ++.||+|||+|.|.+.+.
T Consensus 2 L~v~v~~A~~~~~l~~~d--~-~g~sDPYv~i~~------g----~~~~rTk~~~-~~~nP~WnE~f~f~v~~~------ 61 (126)
T cd08379 2 LEVGILGAQGLDVLRAKD--G-RGSTDAYCVAKY------G----PKWVRTRTVE-DSSNPRWNEQYTWPVYDP------ 61 (126)
T ss_pred eEEEEEEeECCccccccc--c-CCCCCeeEEEEE------C----CEEeEcCccc-CCCCCcceeEEEEEecCC------
Confidence 7999999999 77776 3 368999999986 3 3688999997 489999999999999762
Q ss_pred eeEEEEEEEEccCCC------CCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC--CCcccEEEEE
Q 029535 78 YACIYLQLYTKTLIS------GQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD--GSRGHGVVNL 136 (192)
Q Consensus 78 ~~~L~veV~d~~~~~------~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~--G~k~~G~l~l 136 (192)
...|.|+|||++.++ +|++||++.|+|+++... .....||+|...+ |.+..|.|+.
T Consensus 62 ~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 62 CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCCccCCcEEEe
Confidence 147999999998763 899999999999998642 3345799999754 3467888875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=146.76 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=93.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||++.+ ++ ++.+|+++.+++.||.|||.|.|.+... . ...
T Consensus 3 L~V~v~~A~~L~~~~--~~-~~~dpyv~v~~------~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~~---~--~~~ 64 (118)
T cd08681 3 LVVVVLKARNLPNKR--KL-DKQDPYCVLRI------GG----VTKKTKTDFRGGQHPEWDEELRFEITED---K--KPI 64 (118)
T ss_pred EEEEEEEccCCCCCC--cC-CCCCceEEEEE------CC----CccccccccCCCCCCccCceEEEEecCC---C--CCE
Confidence 689999999999987 34 58999999976 32 4678998766689999999999999762 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
|.|+|||++..+ |++||++.+++.++..... ...||+|.. +| +..|+|+|.+.|
T Consensus 65 l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~---~~~w~~L~~-~~-~~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRK-PDLIGDTEVDLSPALKEGE---FDDWYELTL-KG-RYAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCC-CcceEEEEEecHHHhhcCC---CCCcEEecc-CC-cEeeEEEEEEEC
Confidence 999999998764 8999999999999864321 345899874 34 789999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=147.76 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=87.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . |.+||||.|.+++.. .++ +.++++|+++. ++.||+|||+|.|.+..+... ....
T Consensus 2 L~V~Vi~A~~L~~~d---~-g~~DPYVkV~l~g~~--~~~-k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~~~--~~~~ 71 (120)
T cd08395 2 VTVKVVAANDLKWQT---T-GMFRPFVEVNLIGPH--LSD-KKRKFATKSKN-NNWSPKYNETFQFILGNEDDP--ESYE 71 (120)
T ss_pred EEEEEEECcCCCccc---C-CCCCCEEEEEEecCC--Ccc-cccEeeeEEec-CCCCCccCcEEEEEeeCcCCC--ceeE
Confidence 789999999999876 2 589999999986521 122 24678999884 789999999999999753212 2368
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|++.+++|++||.+.+||+++.... ....|++|..
T Consensus 72 L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 72 LHICVKDYCFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred EEEEEEEecccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 9999999987778999999999999997433 2456899854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=147.21 Aligned_cols=117 Identities=20% Similarity=0.316 Sum_probs=96.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.. .+||||.+.+ + .++.||++++ ++.||.|||+|.|.+.+. + ...
T Consensus 2 L~V~Vi~a~~L~~~-------~~Dpyv~v~l------~----~~~~kT~v~~-~t~nP~Wne~F~f~~~~~---~--~~~ 58 (121)
T cd08378 2 LYVRVVKARGLPAN-------SNDPVVEVKL------G----NYKGSTKAIE-RTSNPEWNQVFAFSKDRL---Q--GST 58 (121)
T ss_pred EEEEEEEecCCCcc-------cCCCEEEEEE------C----CccccccccC-CCCCCccceEEEEEcCCC---c--CCE
Confidence 78999999999864 4799999986 2 2578999986 479999999999998651 1 148
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCC--CCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFP--PGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~--~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+ ++++||.+.++|+++... +++.....||+|....+.+..|+|+|+++|+
T Consensus 59 L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 59 LEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999876 889999999999998542 2334456799998866568899999999996
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=144.36 Aligned_cols=121 Identities=26% Similarity=0.464 Sum_probs=95.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+++.+||||++.+ +++ ....+|+++. ++.||.|||.|.|.+.. . ...
T Consensus 4 l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~------~~~--~~~~kT~~~~-~~~~P~Wne~~~~~v~~-~-----~~~ 66 (124)
T cd04044 4 LAVTIKSARGLKGSD--IIGGTVDPYVTFSI------SNR--RELARTKVKK-DTSNPVWNETKYILVNS-L-----TEP 66 (124)
T ss_pred EEEEEEcccCCCccc--ccCCCCCCeEEEEE------CCC--CcceEeeeec-CCCCCcceEEEEEEeCC-C-----CCE
Confidence 689999999999765 34567899999986 221 2578999986 58999999999999874 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|+|++.+++|++||.+.++|.++..... ....++.+. .+| |++|+|+++++|.|
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 67 LNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-RNG-KPVGELNYDLRFFP 124 (124)
T ss_pred EEEEEEecCCCCCCceeEEEEEEHHHhccCcc--ccCcchhhh-cCC-ccceEEEEEEEeCC
Confidence 99999999988889999999999999975432 222345544 445 88999999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=143.84 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=93.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|+||+..+ .+||||.|.+ ++ .+..||++. ++.||.|||+|.|.+.... ...
T Consensus 6 L~V~Vi~A~~L~~~~------~~DPYv~v~l------~~---~~~~kT~v~--~~~nP~WnE~f~f~~~~~~-----~~~ 63 (126)
T cd08400 6 LQLNVLEAHKLPVKH------VPHPYCVISL------NE---VKVARTKVR--EGPNPVWSEEFVFDDLPPD-----VNS 63 (126)
T ss_pred EEEEEEEeeCCCCCC------CCCeeEEEEE------CC---EeEEEeecC--CCCCCccCCEEEEecCCCC-----cCE
Confidence 689999999998643 6799999987 32 346789974 4799999999999865411 136
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC--CCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD--GSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~--G~k~~G~l~l~v~f~~ 142 (192)
|.|.|+|++.+++|++||++.|||.++... .....||+|...+ +.+..|.|+|+++|.+
T Consensus 64 l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 64 FTISLSNKAKRSKDSEIAEVTVQLSKLQNG---QETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEECCCCCCCCeEEEEEEEHhHccCC---CcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 889999999888999999999999998642 2345699998653 2367899999999976
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=139.01 Aligned_cols=115 Identities=19% Similarity=0.339 Sum_probs=94.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ ++.+|++++ ++.||.|||+|.|.+.+. ...
T Consensus 3 l~v~v~~a~~L~~~~--~~-~~~dPyv~v~~------~~----~~~~T~~~~-~t~nP~W~e~f~~~~~~~------~~~ 62 (119)
T cd08377 3 LQVKVIRASGLAAAD--IG-GKSDPFCVLEL------VN----ARLQTHTIY-KTLNPEWNKIFTFPIKDI------HDV 62 (119)
T ss_pred EEEEEEeeeCCCCCC--CC-CCCCcEEEEEE------CC----Eeeecceec-CCcCCccCcEEEEEecCc------CCE
Confidence 689999999999987 33 57999999976 22 467999987 489999999999998651 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f 140 (192)
|.|+|+|++.++++++||.+.++|.++.... ..||+|..+.+ ++.+|+|.|++.|
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 63 LEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-----RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEEECCCCCCCceeeEEEEEHHHCCCCC-----ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999988788999999999999986332 34899987543 3689999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=139.39 Aligned_cols=122 Identities=17% Similarity=0.378 Sum_probs=97.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+. . + +.+||||.+.+ +. ..++.+|+++. ++.||+|||+|.|.+... ...
T Consensus 1 l~v~v~~A~~L~~-~---~-g~~dpyv~v~~------~~--~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~------~~~ 60 (126)
T cd08678 1 LLVKNIKANGLSE-A---A-GSSNPYCVLEM------DE--PPQKYQSSTQK-NTSNPFWDEHFLFELSPN------SKE 60 (126)
T ss_pred CEEEEEEecCCCC-C---C-CCcCCEEEEEE------CC--CCcEEEeEEEe-cCCCCccCceEEEEeCCC------CCE
Confidence 7899999999987 3 2 58999999976 21 12578999997 479999999999999651 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC--CCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD--GSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~--G~k~~G~l~l~v~f~~~~~ 145 (192)
|.|+|||++.+++|++||.+.++|.++...... ..||+|.... +.+..|+|++.+.|.+.+.
T Consensus 61 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~---~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 61 LLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSG---RQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEeHHHhccCCce---eEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 999999999888899999999999999754332 3578887542 2368999999999988653
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=146.92 Aligned_cols=121 Identities=21% Similarity=0.378 Sum_probs=94.7
Q ss_pred CEEEEEEeeCCCCCCC------C---------------------CcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecC
Q 029535 1 MEITILSAQGLKNTSF------T---------------------LFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDH 53 (192)
Q Consensus 1 LeVtVisAk~L~~~~~------~---------------------~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~ 53 (192)
|+|+|++|++|+++|. . ...+.+||||+|.+ ++ .+..||+++++
T Consensus 9 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l------~~---~~~~rT~v~~~ 79 (158)
T cd04015 9 LDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL------AG---ARVARTRVIEN 79 (158)
T ss_pred eEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE------CC---eEeeEEEEeCC
Confidence 7899999999999871 0 01246899999986 32 24579999874
Q ss_pred CCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCC--ccc
Q 029535 54 GGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGS--RGH 131 (192)
Q Consensus 54 ~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~--k~~ 131 (192)
+.||.|||+|.|.+.+. ...|.|+|+|++.+ ++++||++.|||+++... .....||+|.+..|. +..
T Consensus 80 -~~nP~WnE~F~~~~~~~------~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~~~~~~~~~ 148 (158)
T cd04015 80 -SENPVWNESFHIYCAHY------ASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDSNGKPPKPG 148 (158)
T ss_pred -CCCCccceEEEEEccCC------CCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCC---CCcceEEECcCCCCCCCCCC
Confidence 69999999999998762 14799999999886 568999999999999742 234569999876552 356
Q ss_pred EEEEEEEEEe
Q 029535 132 GVVNLAIKLE 141 (192)
Q Consensus 132 G~l~l~v~f~ 141 (192)
|.|+++++|.
T Consensus 149 ~~l~v~~~f~ 158 (158)
T cd04015 149 AKIRVSLQFT 158 (158)
T ss_pred CEEEEEEEEC
Confidence 7999999984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=139.48 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=95.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+. ..+.+||||.|.+ ++ ..+++|++++ ++.||.|||.|.|.+.+. ...
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l------~~---~~~~kT~v~~-kt~~P~WnE~F~f~v~~~------~~~ 63 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNL------DQ---EEVFRTKTVE-KSLCPFFGEDFYFEIPRT------FRH 63 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEE------CC---ccEEEeeEEE-CCCCCccCCeEEEEcCCC------CCE
Confidence 6899999999998752 2357899999976 22 2468999986 489999999999999862 148
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC-CCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD-GSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~-G~k~~G~l~l~v~f 140 (192)
|.|+|+|++.+++|++||.+.++|+++... .....||+|.... .++.+|.|||+++|
T Consensus 64 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 64 LSFYIYDRDVLRRDSVIGKVAIKKEDLHKY---YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEECCCCCCCceEEEEEEEHHHccCC---CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999988999999999999999642 2345799997532 13679999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=139.15 Aligned_cols=117 Identities=16% Similarity=0.298 Sum_probs=92.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .+ +.+||||++.+.+ . +.++.||+++++ +.||.|||+|.|.+... . ...
T Consensus 2 L~V~vi~a~~L~~~~--~~-~~~Dpyv~v~~~~------~-~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~---~--~~~ 65 (119)
T cd04036 2 LTVRVLRATNITKGD--LL-STPDCYVELWLPT------A-SDEKKRTKTIKN-SINPVWNETFEFRIQSQ---V--KNV 65 (119)
T ss_pred eEEEEEEeeCCCccC--CC-CCCCcEEEEEEcC------C-CCccCccceecC-CCCCccceEEEEEeCcc---c--CCE
Confidence 689999999999987 33 5899999998622 1 135789999974 79999999999998762 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+ +|++||++.++|+++... .....||+|.. +.+|.|++.+.+.
T Consensus 66 l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g---~~~~~~~~L~~----~~~g~l~~~~~~~ 118 (119)
T cd04036 66 LELTVMDEDYV-MDDHLGTVLFDVSKLKLG---EKVRVTFSLNP----QGKEELEVEFLLE 118 (119)
T ss_pred EEEEEEECCCC-CCcccEEEEEEHHHCCCC---CcEEEEEECCC----CCCceEEEEEEee
Confidence 99999999988 899999999999998642 33567899852 3478888888763
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=138.46 Aligned_cols=123 Identities=16% Similarity=0.261 Sum_probs=96.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+.... +.+||||.|.+ + .++.+|++++ ++.||.|||+|.|.+.+. .. ..
T Consensus 3 l~v~v~~a~~L~~~~~~~~-~~~dPyv~v~~------~----~~~~kT~~~~-~t~~P~Wne~f~~~~~~~---~~--~~ 65 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGK-GKSDPYAILSV------G----AQRFKTQTIP-NTLNPKWNYWCEFPIFSA---QN--QL 65 (128)
T ss_pred EEEEEEEeeCCCcccCCCC-CCcCCeEEEEE------C----CEEEecceec-CCcCCccCCcEEEEecCC---CC--CE
Confidence 6899999999998872003 58999998875 2 2578999987 489999999999999761 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC---CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG---SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G---~k~~G~l~l~v~f 140 (192)
|.|+|||++.++++++||.+.|+|.++...........||.|...+. .+..|+|+|.+.|
T Consensus 66 l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 66 LKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999988789999999999999974322233567999876532 2479999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-20 Score=140.95 Aligned_cols=117 Identities=17% Similarity=0.278 Sum_probs=92.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .+ +.+||||++.+ + .++++|++++ ++.||.|||+|.|.+.+. . ...
T Consensus 17 L~V~Vi~A~~L~~~d--~~-g~~DPYv~v~~------~----~~~~kT~vi~-~t~nP~Wne~f~f~v~~~---~--~~~ 77 (136)
T cd08375 17 LMVVIVEGRDLKPCN--SN-GKSDPYCEVSM------G----SQEHKTKVVS-DTLNPKWNSSMQFFVKDL---E--QDV 77 (136)
T ss_pred EEEEEEEeeCCCCCC--CC-CCcCcEEEEEE------C----CEeeeccccC-CCCCCccCceEEEEecCc---c--CCE
Confidence 689999999999987 34 58999999875 2 2578999987 589999999999998651 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCC--CCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFP--PGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~--~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
|.|+|||++.+++|++||.+.++|.++... .....-..+.++ ++ +.+|+|++.+.|
T Consensus 78 l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~-~~~g~i~l~~~~ 135 (136)
T cd08375 78 LCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HE-VPTGEVVVKLDL 135 (136)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---cc-ccceeEEEEEEe
Confidence 999999999888899999999999999642 112222234444 34 778999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=136.25 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=97.1
Q ss_pred EEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEE
Q 029535 5 ILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQ 84 (192)
Q Consensus 5 VisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~ve 84 (192)
|++|++|++ . + +.+||||+|.+ + ..+++|++.+ ++.||.|||+|.|.+.+. ..+ ...|.|+
T Consensus 2 vi~a~~L~~-~---~-g~~Dpyv~v~~------~----~~~~kT~v~~-~~~nP~Wne~f~f~~~~~-~~~--~~~l~~~ 62 (127)
T cd08373 2 VVSLKNLPG-L---K-GKGDRIAKVTF------R----GVKKKTRVLE-NELNPVWNETFEWPLAGS-PDP--DESLEIV 62 (127)
T ss_pred eEEeeCCcc-c---C-CCCCCEEEEEE------C----CEeeecceeC-CCcCCcccceEEEEeCCC-cCC--CCEEEEE
Confidence 799999998 2 3 48999999976 2 2478999987 479999999999999762 112 2589999
Q ss_pred EEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCC
Q 029535 85 LYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPD 146 (192)
Q Consensus 85 V~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~ 146 (192)
|||++.+++|++||.+.++|+++... .....+|+|.+.++...+|+|++.+.|.|+..+
T Consensus 63 v~d~~~~~~d~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 63 VKDYEKVGRNRLIGSATVSLQDLVSE---GLLEVTEPLLDSNGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEECCCCCCCceEEEEEEEhhHcccC---CceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence 99999888899999999999999743 335668999877664468999999999997654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-20 Score=140.22 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=86.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ...+.+||||++.+.+ + ..+.++.||++++ ++.||+|||+|.|.++...+ ++ ..
T Consensus 17 L~V~V~~a~nL~~~d--~~~g~~dpYVkv~llp----~-~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l-~~--~~ 85 (128)
T cd08392 17 LEITIKACRNLAYGD--EKKKKCHPYVKVCLLP----D-KSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLL-SS--RQ 85 (128)
T ss_pred EEEEEEecCCCCccC--CCCCCCCeEEEEEEEe----C-Ccccceeeccccc-CCCCCccceEEEEEcCHHHh-CC--cE
Confidence 689999999999887 2225899999998743 1 1124588999986 58999999999999877332 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|.|+|.+.++++++||++.|+|+++......+....||+|
T Consensus 86 L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 86 LQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999888999999999999999543323455678986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=133.82 Aligned_cols=114 Identities=18% Similarity=0.353 Sum_probs=92.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +..||||.+.+ + .++.+|++.. ++.||.|||+|.|.+.+. +. ..
T Consensus 2 ~~V~v~~a~~L~~~~--~~-~~~dPyv~v~~------~----~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~~--~~ 62 (116)
T cd08376 2 VTIVLVEGKNLPPMD--DN-GLSDPYVKFRL------G----NEKYKSKVCS-KTLNPQWLEQFDLHLFDD---QS--QI 62 (116)
T ss_pred EEEEEEEEECCCCCC--CC-CCCCcEEEEEE------C----CEeEeccccc-CCCCCceeEEEEEEecCC---CC--CE
Confidence 579999999999987 33 58999999976 2 2578999886 589999999999998762 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+++|++||.+.++|+++... .....||+|.. .+|.|++.+.+.
T Consensus 63 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~-----~~G~~~~~~~~~ 115 (116)
T cd08376 63 LEIEVWDKDTGKKDEFIGRCEIDLSALPRE---QTHSLELELED-----GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEEECCCCCCCCeEEEEEEeHHHCCCC---CceEEEEEccC-----CCcEEEEEEEec
Confidence 999999999888899999999999998642 34678999852 258899988775
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=135.39 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=86.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCee-ceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW-GDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~W-NE~f~f~v~~~~l~~~~~~ 79 (192)
|+|+|++|++|+.++ ...+..||||++.+ ++ ++.||++++ ++.||.| ||+|.|.+....+ +. .
T Consensus 1 l~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~------~~----~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l-~~--~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMD--RSSDLTDAFVEVKF------GS----TTYKTDVVK-KSLNPVWNSEWFRFEVDDEEL-QD--E 64 (110)
T ss_pred CEEEEEEEECCCccc--cCCCCCCceEEEEE------CC----eeEecceec-CCCCCcccCcEEEEEcChHHc-CC--C
Confidence 789999999999887 23358999999976 22 588999997 5799999 9999999987332 11 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|+|++.++++++||++.++|.++....++.....||+|.+
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 799999999998889999999999999976433333556998864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-20 Score=139.34 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=76.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+ .+ +.+||||.+.+.. ++ +..+++|+|++ ++.||+|||+|.|.++.+++ + ...
T Consensus 16 L~V~vikA~~L~-~~-----g~sDPYVKv~L~~-----~~-k~~k~kT~v~r-ktlnPvfnE~f~F~v~~~~l-~--~~t 79 (118)
T cd08677 16 LHVNILEAENIS-VD-----AGCECYISGCVSV-----SE-GQKEAQTALKK-LALHTQWEEELVFPLPEEES-L--DGT 79 (118)
T ss_pred EEEEEEEecCCC-CC-----CCCCeEEEEEEcC-----Cc-CccEEEcceec-CCCCCccccEEEEeCCHHHh-C--CcE
Confidence 689999999999 33 3589999998732 12 24688999987 58999999999999988543 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|+|++.++++++||++.++++++.
T Consensus 80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 80 LTLTLRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred EEEEEEeCCCCCCCceEEEEEEcccccc
Confidence 9999999999999999999999999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=135.93 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=91.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ .+.+||++++ ++.||.|||+|.|.+.. . ..
T Consensus 2 l~v~v~~A~~L~~~~--~~-~~~dpyv~v~~------~~---~~~~kT~v~~-~t~nP~Wne~f~~~~~~-~------~~ 61 (123)
T cd08382 2 VRLTVLCADGLAKRD--LF-RLPDPFAVITV------DG---GQTHSTDVAK-KTLDPKWNEHFDLTVGP-S------SI 61 (123)
T ss_pred eEEEEEEecCCCccC--CC-CCCCcEEEEEE------CC---ccceEccEEc-CCCCCcccceEEEEeCC-C------CE
Confidence 689999999999887 44 58999999976 32 3678999986 58999999999999965 1 48
Q ss_pred EEEEEEEccCCCC--CeeeEEEEEeCccccCCCCCcceeEEEEEEeCC---CCcccEEEEEEE
Q 029535 81 IYLQLYTKTLISG--QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD---GSRGHGVVNLAI 138 (192)
Q Consensus 81 L~veV~d~~~~~~--d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~---G~k~~G~l~l~v 138 (192)
|.|+|||++.++. |++||++.+++.++.....+ ...||+|+... ++...|.|.+.+
T Consensus 62 l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 62 ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT--GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEEEECCCCCCCCCceEeEEEEEHHHccccCCC--ccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999988754 58999999999999743322 23488887643 236789988875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=135.19 Aligned_cols=116 Identities=18% Similarity=0.295 Sum_probs=92.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ . .+.+||||++.+ + .++.+|+++. ++.||.|||+|.|.+... . ...
T Consensus 2 L~v~vi~a~~L~~~d--~-~~~~DPyv~v~~------~----~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~--~~~ 62 (123)
T cd04025 2 LRCHVLEARDLAPKD--R-NGTSDPFVRVFY------N----GQTLETSVVK-KSCYPRWNEVFEFELMEG---A--DSP 62 (123)
T ss_pred EEEEEEEeeCCCCCC--C-CCCcCceEEEEE------C----CEEEeceeec-CCCCCccCcEEEEEcCCC---C--CCE
Confidence 789999999999887 3 357999999975 2 2568999987 489999999999998762 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC------CCCcccEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR------DGSRGHGVVNLAIK 139 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~------~G~k~~G~l~l~v~ 139 (192)
|.|+|+|++.++++++||.+.++|.++.... ....||.|... ++ +..|.|+|.++
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~-~~~G~l~~~~~ 123 (123)
T cd04025 63 LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESG-GNLGSLRLKVR 123 (123)
T ss_pred EEEEEEECCCCCCCcEeEEEEEEHHHcccCC---CCCCEEECCCCCCCCcccc-CceEEEEEEeC
Confidence 9999999998888999999999999996432 12458988752 23 67899998763
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-20 Score=146.03 Aligned_cols=89 Identities=18% Similarity=0.359 Sum_probs=79.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|.+|...| |.+++||||.+.+ + .|+.||++.. ++.||+|||.|+|.+.+ + ...
T Consensus 8 L~v~v~~g~~L~~rD---~~~sSDPyVVl~l------g----~q~lkT~~v~-~n~NPeWNe~ltf~v~d-~-----~~~ 67 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRD---FLGSSDPYVVLEL------G----NQKLKTRVVY-KNLNPEWNEELTFTVKD-P-----NTP 67 (168)
T ss_pred EEEEEEeecCeeeec---cccCCCCeEEEEE------C----Ceeeeeeeec-CCCCCcccceEEEEecC-C-----Cce
Confidence 689999999999998 4358999999987 3 4899999885 68999999999999988 2 358
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.++|||++.|+.|++||.|.|||..+.+
T Consensus 68 lkv~VyD~D~fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 68 LKVTVYDKDTFSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred EEEEEEeCCCCCcccccceeeeccHHHHH
Confidence 99999999999999999999999999964
|
|
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=135.81 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=96.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccC-----cccc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCN-----AFFA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~-----~l~~ 75 (192)
|+|+|++|++|+.++ .+ +.+||||+|.+ + .++.+|++++ ++.||.|||.|.|.+..- .+..
T Consensus 3 l~v~V~~a~~L~~~d--~~-g~~dpyv~v~~------~----~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~ 68 (135)
T cd04017 3 LRAYIYQARDLLAAD--KS-GLSDPFARVSF------L----NQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQ 68 (135)
T ss_pred EEEEEEEeecCcCCC--CC-CCCCCEEEEEE------C----CeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhc
Confidence 689999999999887 33 58999999986 2 2578999996 589999999999974320 0101
Q ss_pred CceeEEEEEEEEccCCCCCeeeEEEEE-eCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 76 NRYACIYLQLYTKTLISGQTLLGWCQI-PVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 76 ~~~~~L~veV~d~~~~~~d~~IG~~~I-pL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
. ...|.|+|+|++.+++|++||++.+ |+..+.....+.....||+|.. .| +.+|+|.+++.+.++
T Consensus 69 ~-~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~-~~~Geil~~~~~~~~ 134 (135)
T cd04017 69 N-PPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GG-QSAGELLAAFELIEV 134 (135)
T ss_pred C-CCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CC-CchhheeEEeEEEEe
Confidence 1 1369999999998888999999987 6655543333455678999973 34 689999999998874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-19 Score=133.15 Aligned_cols=118 Identities=16% Similarity=0.282 Sum_probs=93.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .. +.+||||.+.+ ++ ....||+++.+ +.||.|||.|.|.+.+ . ...
T Consensus 2 l~v~vi~a~~L~~~d--~~-g~~DPYv~v~~------~~---~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~-----~~~ 62 (121)
T cd04054 2 LYIRIVEGKNLPAKD--IT-GSSDPYCIVKV------DN---EVIIRTATVWK-TLNPFWGEEYTVHLPP-G-----FHT 62 (121)
T ss_pred EEEEEEEeeCCcCCC--CC-CCCCceEEEEE------CC---EeeeeeeeEcC-CCCCcccceEEEeeCC-C-----CCE
Confidence 689999999999998 33 58999999976 32 23579999874 8999999999999876 2 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC-CCcccEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD-GSRGHGVVNLAIK 139 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~-G~k~~G~l~l~v~ 139 (192)
|.|+|+|++.++.|++||.+.+++..+...+. ....||+|...+ +++..|+|++.++
T Consensus 63 l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~--~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 63 VSFYVLDEDTLSRDDVIGKVSLTREVISAHPR--GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEECCCCCCCCEEEEEEEcHHHhccCCC--CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999988889999999999988864322 234689987522 2257899999876
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=134.61 Aligned_cols=94 Identities=23% Similarity=0.483 Sum_probs=78.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||+|.+ + .+..+|++..+++.||.|||+|.|.+..... . ....
T Consensus 3 L~V~V~~A~~L~~~~--~~-~~~dpyv~v~~------~----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~-~~~~ 67 (124)
T cd04049 3 LEVLLISAKGLQDTD--FL-GKIDPYVIIQC------R----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGW-G-GDTK 67 (124)
T ss_pred EEEEEEecCCCCCCC--CC-CCcCceEEEEE------C----CEeeeeeEcCCCCCCCcccceEEEEecCccc-C-CCCE
Confidence 689999999999987 44 58999999976 2 2467899887668999999999999987321 1 1247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|+|.+.+.+|++||.+.++|.++..
T Consensus 68 l~v~V~d~~~~~~d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 68 LILRIMDKDNFSDDDFIGEATIHLKGLFE 96 (124)
T ss_pred EEEEEEECccCCCCCeEEEEEEEhHHhhh
Confidence 99999999988889999999999999965
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=136.42 Aligned_cols=108 Identities=15% Similarity=0.290 Sum_probs=84.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ...+.+||||++.+.+ .+.+..+.||++++ ++.||.|||+|.|.++...+ +. ..
T Consensus 17 L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p-----~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l-~~--~~ 85 (125)
T cd04029 17 LNVHVKECRNLAYGD--EAKKRSNPYVKTYLLP-----DKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQL-ET--RT 85 (125)
T ss_pred EEEEEEEecCCCccC--CCCCCCCcEEEEEEEc-----CCccccceEeeeee-CCCCCcccceEEEECCHHHh-CC--CE
Confidence 689999999999876 2235899999998732 11123578999886 58999999999999976332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|||++.++++++||.+.|+|.++.... ....||+|
T Consensus 86 L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~---~~~~w~~l 124 (125)
T cd04029 86 LQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS---QHEECLPL 124 (125)
T ss_pred EEEEEEECCCCCCCcEEEEEEEeCCcccccC---CcccEEEC
Confidence 9999999999889999999999999995432 23458887
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=136.37 Aligned_cols=106 Identities=16% Similarity=0.287 Sum_probs=83.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEc-ccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPT-DCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v-~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .+.+||||+|.+.+ +. .+.++.||++++ ++.||.|||+|.|.+ +... +++ .
T Consensus 15 L~V~Vi~A~~L~~~~----~~~~DpyVkv~l~~----~~-~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~-l~~--~ 81 (122)
T cd08381 15 LFVMVMHAKNLPLLD----GSDPDPYVKTYLLP----DP-QKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVED-LQQ--R 81 (122)
T ss_pred EEEEEEEeeCCCCCC----CCCCCCEEEEEEee----CC-ccCCceeCCccC-CCCCCCcccEEEEecCChHH-hCC--C
Confidence 689999999999886 25899999998743 11 124688999987 579999999999987 4422 222 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|||++.++++++||++.|+|+++.... ....||+|
T Consensus 82 ~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 82 VLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred EEEEEEEeCCCCcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 89999999999888999999999999996432 23458876
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=136.95 Aligned_cols=108 Identities=14% Similarity=0.311 Sum_probs=84.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ...+.+||||++.+++- . ....+.||++++ ++.||+|||+|.|.++...+ +. ..
T Consensus 17 L~V~vi~a~~L~~~d--~~~g~~dpyVkv~l~p~----~-~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l-~~--~~ 85 (125)
T cd08393 17 LHVHVIQCQDLAAAD--PKKQRSDPYVKTYLLPD----K-SNRGKRKTSVKK-KTLNPVFNETLRYKVEREEL-PT--RV 85 (125)
T ss_pred EEEEEEEeCCCCCcC--CCCCCCCcEEEEEEEcC----C-CccccccCccCc-CCCCCccCceEEEECCHHHh-CC--CE
Confidence 689999999999987 22257999999987431 1 113567999997 58999999999999976333 22 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|||++.++++++||++.|+|+++... .....||+|
T Consensus 86 L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L 124 (125)
T cd08393 86 LNLSVWHRDSLGRNSFLGEVEVDLGSWDWS---NTQPTWYPL 124 (125)
T ss_pred EEEEEEeCCCCCCCcEeEEEEEecCccccC---CCCcceEEC
Confidence 999999999988999999999999999532 223458876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=132.91 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=85.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+ . +.+||||++.+ ++ ++.+|++++ ++.||.|||+|.|.+.... .+-....
T Consensus 6 l~V~v~~a~~L~--~-----~~~dpyv~v~~------~~----~~~kT~~~~-~t~nP~wne~f~f~~~~~~-~~l~~~~ 66 (111)
T cd04011 6 VRVRVIEARQLV--G-----GNIDPVVKVEV------GG----QKKYTSVKK-GTNCPFYNEYFFFNFHESP-DELFDKI 66 (111)
T ss_pred EEEEEEEcccCC--C-----CCCCCEEEEEE------CC----EeeeeeEEe-ccCCCccccEEEEecCCCH-HHHhcCe
Confidence 689999999999 2 47899999986 32 578999886 5789999999999975421 1101247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|+|++.+++|++||++.++|+++...+++.....||+|.++
T Consensus 67 l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~~ 111 (111)
T cd04011 67 IKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111 (111)
T ss_pred EEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeCc
Confidence 999999999888899999999999999876666777889999753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=133.34 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=92.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.. ++ ++.+|++++ ++.||.|||.|.|.+... ...
T Consensus 5 ~~V~v~~A~~L~~~d--~~-g~~dPyv~v~~------~~----~~~kT~v~~-~t~nP~Wne~f~f~~~~~------~~~ 64 (126)
T cd04046 5 TQVHVHSAEGLSKQD--SG-GGADPYVIIKC------EG----ESVRSPVQK-DTLSPEFDTQAIFYRKKP------RSP 64 (126)
T ss_pred EEEEEEeCcCCCCCC--CC-CCcCccEEEEE------CC----EEEEeCccC-CCCCCcccceEEEEecCC------CCE
Confidence 689999999999987 44 58999999965 32 578999986 589999999999988652 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe----CCCCcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA----RDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~----~~G~k~~G~l~l~v~f~~~ 143 (192)
|.|+|||++.+ +|++||.+.+++.++... ...+|+|.. .+| +..|.|.+.+.+.+.
T Consensus 65 l~i~V~d~~~~-~d~~lG~~~~~l~~~~~~-----~~~~~~l~~~~~~~~~-~~~G~i~~~~~~~~~ 124 (126)
T cd04046 65 IKIQVWNSNLL-CDEFLGQATLSADPNDSQ-----TLRTLPLRKRGRDAAG-EVPGTISVKVTSSDD 124 (126)
T ss_pred EEEEEEECCCC-CCCceEEEEEecccCCCc-----CceEEEcccCCCCCCC-CCCCEEEEEEEEccc
Confidence 99999999876 689999999999876421 224677743 334 899999999988764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=131.35 Aligned_cols=120 Identities=21% Similarity=0.377 Sum_probs=93.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.. .+. +...+||+++.+ +.||.|||+|.|.+... . ...
T Consensus 3 ~~V~v~~a~~L~~~~--~-~~~~Dpyv~v~~------~~~-~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~---~--~~~ 66 (126)
T cd04043 3 FTIRIVRAENLKADS--S-NGLSDPYVTLVD------TNG-KRRIAKTRTIYD-TLNPRWDEEFELEVPAG---E--PLW 66 (126)
T ss_pred EEEEEEEeECCCCCC--C-CCCCCceEEEEE------CCC-CeeeecccEecC-CCCCcccceEEEEcCCC---C--CCE
Confidence 579999999999987 3 358999999864 221 135689999864 79999999999999772 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|+|++.++.+++||++.++|.++....++.....|++|. ++|.|++.+.+..
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~------~~g~i~l~~~~~~ 122 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD------TQGRLLLRVSMEG 122 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC------CCCeEEEEEEEee
Confidence 9999999998878999999999999875432234456799983 2678888888765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=133.07 Aligned_cols=118 Identities=22% Similarity=0.401 Sum_probs=93.1
Q ss_pred CEEEEEEeeCCCCCCCCC---c----CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCcc
Q 029535 1 MEITILSAQGLKNTSFTL---F----SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAF 73 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~---~----~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l 73 (192)
|+|+|++|++|++.+... | .+.+||||++.+ ++ .+..+|++++ ++.||.|||+|.|.+.+ .
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~------~~---~~~~kT~~~~-~t~~P~Wne~f~~~v~~-~- 73 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV------DD---THIGKTSTKP-KTNSPVWNEEFTTEVHN-G- 73 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEE------CC---EEEeEEeEcC-CCCCCCcceeEEEEcCC-C-
Confidence 689999999999887200 1 147899999976 32 2457899876 58999999999999965 1
Q ss_pred ccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 74 FANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 74 ~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
..|.|+|+|++.++.+++||.+.++|.++... .+.....||+|. ++|.|++.+++..
T Consensus 74 -----~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 -----RNLELTVFHDAAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred -----CEEEEEEEeCCCCCCCceEEEEEEEhHHhccc-CCCcccEEEEcc------CCcEEEEEEEEec
Confidence 47999999998887899999999999999753 123356799983 4689999999876
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=130.55 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=82.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . ++.+||||++.+ ++ ++.+|++++ ++.||.|||+|.|.+.+.. ...
T Consensus 2 L~V~v~~A~~L~~~~--~-~~~~dpyv~v~~------~~----~~~kT~v~~-~t~nP~Wne~f~f~v~~~~-----~~~ 62 (105)
T cd04050 2 LFVYLDSAKNLPLAK--S-TKEPSPYVELTV------GK----TTQKSKVKE-RTNNPVWEEGFTFLVRNPE-----NQE 62 (105)
T ss_pred EEEEEeeecCCCCcc--c-CCCCCcEEEEEE------CC----EEEeCcccc-CCCCCcccceEEEEeCCCC-----CCE
Confidence 689999999999887 2 468999999987 32 688999886 5899999999999998621 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|++. |++||.+.++|.++...+ +.....||+|.+
T Consensus 63 l~v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~~ 102 (105)
T cd04050 63 LEIEVKDDKT---GKSLGSLTLPLSELLKEP-DLTLDQPFPLDN 102 (105)
T ss_pred EEEEEEECCC---CCccEEEEEEHHHhhccc-cceeeeeEecCC
Confidence 9999999875 789999999999997544 344567999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=133.39 Aligned_cols=120 Identities=25% Similarity=0.391 Sum_probs=93.1
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCC--------ccEEEeEeecCCCCCCee-ceEEEEEcccCc
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKH--------CHVYRTRVDDHGGVNPTW-GDKFYVPTDCNA 72 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~--------~~~~rT~v~~~~g~nP~W-NE~f~f~v~~~~ 72 (192)
.|++++|++|+ .+ .| +++||||++.+.+ ++.. .++++|++++ ++.||+| ||+|.|.+..+
T Consensus 4 ~~~~~~A~~L~-~~--~f-g~~DPyvki~~~~-----~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~- 72 (137)
T cd08691 4 SLSGLQARNLK-KG--MF-FNPDPYVKISIQP-----GKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT- 72 (137)
T ss_pred EEEEEEeCCCC-Cc--cC-CCCCceEEEEEEC-----CCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCCC-
Confidence 68999999998 55 56 4899999998742 1110 2578999996 5899999 99999998652
Q ss_pred cccCceeEEEEEEEEccCCCC---CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEE
Q 029535 73 FFANRYACIYLQLYTKTLISG---QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAI 138 (192)
Q Consensus 73 l~~~~~~~L~veV~d~~~~~~---d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v 138 (192)
..|.|+|+|++..+. |++||++.|||++|...+.......+|+|..++. ++.+|+|.+.+
T Consensus 73 ------~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 ------DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ------CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 379999999764322 7899999999999986655555777999886543 37899998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=137.00 Aligned_cols=113 Identities=18% Similarity=0.356 Sum_probs=84.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccC---------
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCN--------- 71 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~--------- 71 (192)
|.|+|++|++|.... |..||||.|.+.+. ..+.++.+|++++ ++.||+|||+|.|.+...
T Consensus 2 L~V~Vi~ArnL~~~~-----g~sDPYV~V~l~~~-----~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~ 70 (148)
T cd04010 2 LSVRVIECSDLALKN-----GTCDPYASVTLIYS-----NKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFE 70 (148)
T ss_pred EEEEEEeCcCCCCCC-----CCCCceEEEEEeCC-----cccCcccCCccEe-CCCCCccceEEEEEEeccccccccccc
Confidence 689999999999832 58999999987431 1123678999987 589999999999998410
Q ss_pred -ccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 72 -AFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 72 -~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
+..+.+...|.|+|||++.+++|++||.+.|||.++.... .....||+|..++
T Consensus 71 ~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~~~ 124 (148)
T cd04010 71 MPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQPRE 124 (148)
T ss_pred CCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccC--CcCcceeecCCcc
Confidence 0011122589999999998888999999999999986431 1235699997653
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=132.74 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=82.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEE-EcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYV-PTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f-~v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ ..++.+||||+|.+. ++ +.++.||++++ ++.||+|||+|.| .++...+ .+ .
T Consensus 18 L~V~Vi~a~~L~~~~--~~~~~~DpyV~v~l~------~~-~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~-~~--~ 84 (128)
T cd08388 18 LLVNIIECRDLPAMD--EQSGTSDPYVKLQLL------PE-KEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQL-QD--L 84 (128)
T ss_pred EEEEEEEeECCCCCC--CCCCCcCCEEEEEEe------CC-cCceeeccEEc-CCCCCceeeEEEEcccCHHHh-CC--C
Confidence 689999999999987 333689999999873 22 23678999987 4899999999999 4654222 11 3
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|+|++.+++|++||++.|+|+++.-..+++ -.+|.+|
T Consensus 85 ~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~-~~~~~~~ 126 (128)
T cd08388 85 SLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGE-LLVSREI 126 (128)
T ss_pred EEEEEEEEcCCCCCCceeEEEEEeccccCCCCCce-EEEEEec
Confidence 79999999998889999999999999995432223 4456665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=129.52 Aligned_cols=116 Identities=16% Similarity=0.295 Sum_probs=91.9
Q ss_pred CEEEEEEeeCCCCCCCCC---cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTL---FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~---~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|.|+|++|++|+..+... +.+.+||||++.+ + .+.++|+++. ++.||.|||.|.|.+... .
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~------~----~~~~kT~~~~-~t~~P~W~e~f~~~v~~~---~-- 66 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV------G----AQTFKSKVIK-ENLNPKWNEVYEAVVDEV---P-- 66 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEE------C----CEeEEccccC-CCCCCcccceEEEEeCCC---C--
Confidence 689999999999887210 1357899999976 2 2578999986 489999999999998752 1
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
...|.|+|+|++.+ +|++||.+.++|.++.... ....||+|.+ ..+|.|++.++|
T Consensus 67 ~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~----~~~G~~~~~~~~ 121 (121)
T cd08391 67 GQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKG---FIDEWLPLED----VKSGRLHLKLEW 121 (121)
T ss_pred CCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccC---ccceEEECcC----CCCceEEEEEeC
Confidence 24899999999887 8899999999999996432 2457999853 357999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-19 Score=133.89 Aligned_cols=108 Identities=17% Similarity=0.294 Sum_probs=84.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCC-ccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKH-CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~-~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|+|+.|+||+..+. .+..||||++.+.+ + ..+ ..+.||++.++ +.||+|||+|.|+++.+++ ++ .
T Consensus 16 L~V~V~~arnL~~~~~---~~~~dpyVKv~Llp----~-~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L-~~--~ 83 (124)
T cd08680 16 LVISVEQLRNLSALSI---PENSKVYVRVALLP----C-SSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKL-YQ--K 83 (124)
T ss_pred EEEEEeEecCCccccc---CCCCCeEEEEEEcc----C-CCCCCceEEcCccCC-CCCCccccEEEEECCHHHh-hc--C
Confidence 6899999999998862 35789999998743 1 111 35889999874 8999999999999987443 22 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|.|++.+.++++++||.+.|+|+++....+ ....||.|
T Consensus 84 ~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 84 TLQVDVCSVGPDQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred EEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 899999999988889999999999999943322 23457764
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-19 Score=130.70 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=78.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+.+.+||||+|.+.+ + +...++|++++ ++.||.|||+|.|.+...++.. ...
T Consensus 3 L~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~~~------~-~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~--~~~ 70 (111)
T cd04041 3 LVVTIHRATDLPKAD--FGTGSSDPYVTASFAK------F-GKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKA--GER 70 (111)
T ss_pred EEEEEEEeeCCCccc--CCCCCCCccEEEEEcc------C-CCccEeeeeEC-CCCCCccceeEEEEeCchhccC--CCE
Confidence 689999999999988 3325899999997622 1 13568999987 4899999999999876522211 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|||++.+++|++||++.++|++|..
T Consensus 71 l~~~V~d~d~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 71 LSCRLWDSDRFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred EEEEEEeCCCCCCCCcceEEEEEHHHHhc
Confidence 99999999998889999999999999984
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=129.91 Aligned_cols=117 Identities=24% Similarity=0.409 Sum_probs=92.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|+ |...+ .+ +.+||||.+.+ ++ ..+.+|++.. ++.||.|||+|.|.+... ..
T Consensus 4 L~V~i~~a~-l~~~~--~~-~~~dPyv~v~~------~~---~~~~kT~v~~-~t~~P~Wne~f~~~~~~~-------~~ 62 (125)
T cd04021 4 LQITVESAK-LKSNS--KS-FKPDPYVEVTV------DG---QPPKKTEVSK-KTSNPKWNEHFTVLVTPQ-------ST 62 (125)
T ss_pred EEEEEEeeE-CCCCC--cC-CCCCeEEEEEE------CC---cccEEeeeeC-CCCCCccccEEEEEeCCC-------CE
Confidence 689999999 55554 23 47999999976 32 1378999886 589999999999998651 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcce--eEEEEEEeCC--CCcccEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVR--NLSYRLRARD--GSRGHGVVNLAI 138 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~--~~~y~L~~~~--G~k~~G~l~l~v 138 (192)
|.|+|||++.++.|++||++.++|+++...+.+... ..|+++.+++ +++..|.|++.+
T Consensus 63 l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 63 LEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 999999999988899999999999999764444333 3589998754 347899998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=132.68 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=80.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ ..||||.+.+ + .++.+|++.++ .||.|||+|.|.++.. + ..
T Consensus 4 L~V~Vv~Ar~L~~~~------~~dPYV~Ik~------g----~~k~kT~v~~~--~nP~WnE~F~F~~~~~---~---~~ 59 (127)
T cd08394 4 LCVLVKKAKLDGAPD------KFNTYVTLKV------Q----NVKSTTIAVRG--SQPCWEQDFMFEINRL---D---LG 59 (127)
T ss_pred EEEEEEEeeCCCCCC------CCCCeEEEEE------C----CEEeEeeECCC--CCCceeeEEEEEEcCC---C---CE
Confidence 689999999998754 3589999986 3 36889998853 6999999999999762 1 35
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|++.+ .|++||.+.|||.++... +..+...||+|.-
T Consensus 60 L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~-~~~~~~~Wy~L~~ 101 (127)
T cd08394 60 LVIELWNKGLI-WDTLVGTVWIPLSTIRQS-NEEGPGEWLTLDS 101 (127)
T ss_pred EEEEEEeCCCc-CCCceEEEEEEhHHcccC-CCCCCCccEecCh
Confidence 99999999865 899999999999999754 3455678999973
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=129.15 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=76.2
Q ss_pred CEEEEEEeeCCCCCCCCC-cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTL-FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~-~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+... -++.+||||++.+ + .+++||+++++ +.||+|||+|.|.+.+.. . ..
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~------~----~~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~-~~ 67 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISF------G----RRVFRTSWRRH-TLNPVFNERLAFEVYPHE---K-NF 67 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEE------C----CEeEeeeeecC-CCCCcccceEEEEEeCcc---C-CC
Confidence 689999999999886210 1135899999975 2 25789999974 799999999999986522 1 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|.|+|||++.++.|++||.+.++|++|..
T Consensus 68 ~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 68 DIQFKVLDKDKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred EEEEEEEECCCCCCCcceEEEEEEHHHHHh
Confidence 799999999998899999999999999975
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=129.80 Aligned_cols=105 Identities=19% Similarity=0.382 Sum_probs=82.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+.+ + +..+++|++++ ++.||.|||+|.|.+....+ .. ..
T Consensus 18 L~V~v~~a~~L~~~d--~-~~~~dpyv~v~l~~------~-~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l-~~--~~ 83 (124)
T cd08385 18 LTVGIIQAADLPAMD--M-GGTSDPYVKVYLLP------D-KKKKFETKVHR-KTLNPVFNETFTFKVPYSEL-GN--KT 83 (124)
T ss_pred EEEEEEEeeCCCCcc--C-CCCCCCEEEEEEEc------C-CCCceecccCc-CCCCCceeeeEEEeCCHHHh-CC--CE
Confidence 689999999999887 3 35799999998632 2 13578999886 58999999999999876222 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|++.++++++||++.++|+++... .....||+|
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l 122 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLG---HVTEEWRDL 122 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCC---CCcceEEEc
Confidence 999999999888899999999999998542 234468876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=129.48 Aligned_cols=113 Identities=25% Similarity=0.376 Sum_probs=88.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +..||||++.+ + .++.+|+++. ++.||.|||+|.|.+.. + . ..
T Consensus 3 L~V~vi~a~~L~~~d--~~-g~~DPyv~v~~------~----~~~~kT~~v~-~t~~P~Wne~f~f~~~~-~---~--~~ 62 (127)
T cd04027 3 ISITVVCAQGLIAKD--KT-GTSDPYVTVQV------G----KTKKRTKTIP-QNLNPVWNEKFHFECHN-S---S--DR 62 (127)
T ss_pred EEEEEEECcCCcCCC--CC-CCcCcEEEEEE------C----CEeeecceec-CCCCCccceEEEEEecC-C---C--CE
Confidence 689999999999988 34 57999999975 2 2467999886 48999999999998865 1 1 37
Q ss_pred EEEEEEEccCC-----------CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEE
Q 029535 81 IYLQLYTKTLI-----------SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAI 138 (192)
Q Consensus 81 L~veV~d~~~~-----------~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v 138 (192)
|.|+|||++.. +.+++||.+.+++.++... ...||.|...++ ++.+|.|.+++
T Consensus 63 l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence 99999998742 3689999999999987421 246999986543 25899999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=134.16 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=83.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+. ..+..||||++.+.+ +. ....+.||++++ ++.||+|||+|.|.+.. .+ ..
T Consensus 31 L~V~Vi~ArnL~~~~~--~~g~sDPYVKv~Llp----~~-~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l----~~--~~ 96 (146)
T cd04028 31 LEVEVIRARGLVQKPG--SKVLPAPYVKVYLLE----GK-KCIAKKKTKIAR-KTLDPLYQQQLVFDVSP----TG--KT 96 (146)
T ss_pred EEEEEEEeeCCCcccC--CCCCcCCeEEEEEEC----CC-ccccceeceecC-CCCCCccCCeEEEEEcC----CC--CE
Confidence 6899999999987641 235789999998743 11 123588999996 58999999999999863 12 48
Q ss_pred EEEEEE-EccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLY-TKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~-d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|| |++.++++++||.+.|+|+++.... ....||+|...
T Consensus 97 L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~ 139 (146)
T cd04028 97 LQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPT 139 (146)
T ss_pred EEEEEEeCCCCCCCCceEEEEEEEcccccCCC---CceeEEecCCc
Confidence 999999 5777778999999999999984322 23569999754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=130.85 Aligned_cols=105 Identities=17% Similarity=0.328 Sum_probs=83.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|+||+..+ .++..||||.+.+.+ + +.++.||++++ + .||+|||+|.|+ ++.+. +.+ .
T Consensus 18 L~V~Vi~a~nL~~~~---~~~~~d~yVk~~llp------~-~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~-l~~--~ 82 (124)
T cd08389 18 LTVTVIRAQDIPTKD---RGGASSWQVHLVLLP------S-KKQRAKTKVQR-G-PNPVFNETFTFSRVEPEE-LNN--M 82 (124)
T ss_pred EEEEEEEecCCCchh---cCCCCCcEEEEEEcc------C-Ccceeeccccc-C-CCCcccCEEEECCCCHHH-hcc--C
Confidence 689999999999987 246789999876532 2 24688999886 4 999999999998 76533 222 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
.|.|+|+|++.++++++||++.|+|+++... .....||+|.
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~ 123 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLE---GETTVWLTLE 123 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCC---CCceEEEeCC
Confidence 8999999999888899999999999999532 3356788873
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=163.87 Aligned_cols=107 Identities=22% Similarity=0.407 Sum_probs=88.1
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~ 101 (192)
++||||+|.+ ++ ..+.||+|++ ++.||+|||+|+|.+.+. ...|.|+|||++.+ ++++||++.
T Consensus 76 tSDPYV~I~L------g~---~rv~RTrVi~-n~~NPvWNE~F~f~vah~------~s~L~f~VkD~D~~-gaD~IG~a~ 138 (868)
T PLN03008 76 TSDPYVTVVV------PQ---ATLARTRVLK-NSQEPLWDEKFNISIAHP------FAYLEFQVKDDDVF-GAQIIGTAK 138 (868)
T ss_pred CCCceEEEEE------CC---cceeeEEeCC-CCCCCCcceeEEEEecCC------CceEEEEEEcCCcc-CCceeEEEE
Confidence 5799999987 32 3567999986 588999999999999882 25899999999998 468999999
Q ss_pred EeCccccCCCCCcceeEEEEEEeCCCC--cccEEEEEEEEEeecCCCCC
Q 029535 102 IPVNDIGFPPGGSVRNLSYRLRARDGS--RGHGVVNLAIKLEPVVPDTS 148 (192)
Q Consensus 102 IpL~~l~~~~~~~~~~~~y~L~~~~G~--k~~G~l~l~v~f~~~~~~~~ 148 (192)
|||.+|... .....|++|.+.+|. |..|.|+|+++|.|+..++.
T Consensus 139 IPL~~L~~G---e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~ 184 (868)
T PLN03008 139 IPVRDIASG---ERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHS 184 (868)
T ss_pred EEHHHcCCC---CceEEEEEccccCCCCCCCCcEEEEEEEEEEcccccc
Confidence 999999753 334579999988763 35679999999999988763
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=126.28 Aligned_cols=123 Identities=19% Similarity=0.310 Sum_probs=94.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..++. ..+..||||++.+++. +..+..+.||+++.+++.||.|||+|.|.+.... ...
T Consensus 4 l~v~vi~a~~L~~~~~~-~~~~~dpyv~v~l~~~----~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-----~~~ 73 (128)
T cd00275 4 LTIKIISGQQLPKPKGD-KGSIVDPYVEVEIHGL----PADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-----LAF 73 (128)
T ss_pred EEEEEEeeecCCCCCCC-CCCccCCEEEEEEEeC----CCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-----eEE
Confidence 68999999999987621 1247899999998642 1101367899998766669999999999987521 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCC-cccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGS-RGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~-k~~G~l~l~v~f 140 (192)
|.|+|+|++.. ++++||++.++|.++... ..+++|.+++|. ...|.|.+.+++
T Consensus 74 l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 74 LRFVVYDEDSG-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEEEEeCCCC-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99999999887 899999999999999532 237899887763 356888888775
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=128.49 Aligned_cols=106 Identities=13% Similarity=0.363 Sum_probs=84.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+. ++ +.++++|++.+ ++.||.|||+|.|.+....+ .. ..
T Consensus 18 L~V~v~~a~~L~~~d--~-~g~~dpyv~v~l~------~~-~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l-~~--~~ 83 (124)
T cd08387 18 LNVKLIQARNLQPRD--F-SGTADPYCKVRLL------PD-RSNTKQSKIHK-KTLNPEFDESFVFEVPPQEL-PK--RT 83 (124)
T ss_pred EEEEEEEeeCCCCCC--C-CCCCCCeEEEEEe------cC-CCCcEeCceEc-CCCCCCcccEEEEeCCHHHh-CC--CE
Confidence 679999999999887 3 3589999999862 11 13578999986 58999999999999876322 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|+|++.+++|++||.+.|+|+++.... ....||+|.
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 9999999998888999999999999996332 235688874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=127.35 Aligned_cols=108 Identities=18% Similarity=0.315 Sum_probs=83.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ .+.+.+||||+|.+.+ ......+.+|++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~a~~L~~~~--~~~~~~dpyv~v~l~~-----~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l-~~--~~ 84 (123)
T cd08521 16 LEVHIKECRNLAYAD--EKKKRSNPYVKVYLLP-----DKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQL-ET--RT 84 (123)
T ss_pred EEEEEEEecCCCCcC--CCCCCCCcEEEEEEec-----CCCcCceeeccccC-CCCCCcccceEEEeCCHHHh-CC--CE
Confidence 689999999999886 2345899999998632 11113578999876 58999999999999876332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|++.++++++||++.++|+++.... ....||+|
T Consensus 85 l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 85 LQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred EEEEEEeCCCCcCCceeeEEEEecccccccC---CCccEEEC
Confidence 9999999998888999999999999995322 23458875
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=124.53 Aligned_cols=114 Identities=25% Similarity=0.426 Sum_probs=90.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||+|.+ ++ ...++|+++. ++.||.|||+|.|.+... . ...
T Consensus 1 l~v~vi~a~~L~~~~--~~-~~~dpyv~v~~------~~---~~~~~T~v~~-~~~~P~Wne~f~~~~~~~---~--~~~ 62 (115)
T cd04040 1 LTVDVISAENLPSAD--RN-GKSDPFVKFYL------NG---EKVFKTKTIK-KTLNPVWNESFEVPVPSR---V--RAV 62 (115)
T ss_pred CEEEEEeeeCCCCCC--CC-CCCCCeEEEEE------CC---Ccceeeceec-CCCCCcccccEEEEeccC---C--CCE
Confidence 789999999999987 33 57999999976 22 2467999886 589999999999998762 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNL 136 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l 136 (192)
|.|+|||++.++++++||++.+++.++... .....|++|... |+...|.|-+
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~-g~~~~~~~~~ 114 (115)
T cd04040 63 LKVEVYDWDRGGKDDLLGSAYIDLSDLEPE---ETTELTLPLDGQ-GGGKLGAVFL 114 (115)
T ss_pred EEEEEEeCCCCCCCCceEEEEEEHHHcCCC---CcEEEEEECcCC-CCccCceEEc
Confidence 999999999888899999999999998643 235678998754 4467887753
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=128.18 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=80.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|+.|++|++++ .+.+||||++.+.+ +. .+..+.||++++ ++.||.|||+|.|.+....+ + ..
T Consensus 14 L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p----~~-~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~---~-~~ 79 (119)
T cd08685 14 LTLHVLEAKGLRSTN----SGTCNSYVKISLSP----DK-EVRFRQKTSTVP-DSANPLFHETFSFDVNERDY---Q-KR 79 (119)
T ss_pred EEEEEEEEECCCCCC----CCCCCeeEEEEEEe----CC-CCcceEeCcccc-CCCCCccccEEEEEcChHHh---C-CE
Confidence 689999999999886 25799999998743 11 124577999886 58999999999999976322 1 36
Q ss_pred EEEEEEEccCCC-CCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLIS-GQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~-~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|||.+... ++++||.+.|||.++.... ....||.|
T Consensus 80 l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~---~~~~Wy~l 119 (119)
T cd08685 80 LLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK---EISGWYYL 119 (119)
T ss_pred EEEEEECCCCCcCCCEEEEEEEecHHHhccCc---cccceEeC
Confidence 889999988764 4789999999999996322 23458865
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=132.84 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=84.3
Q ss_pred CEEEEEEeeCCCCCCCCCc-----------CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc
Q 029535 1 MEITILSAQGLKNTSFTLF-----------SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD 69 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~-----------~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~ 69 (192)
|.|+|++|++|+.++...+ .+.+||||+|.+ ++ ++.||++++ ++.||+|||+|.|++.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~------~g----~~~kT~v~~-~t~nPvWNE~f~f~v~ 70 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF------AG----QKVKTSVKK-NSYNPEWNEQIVFPEM 70 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE------CC----EeeecceEc-CCCCCCcceEEEEEee
Confidence 6899999999999873111 136899999986 32 467999987 5899999999999875
Q ss_pred cCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCC-C---cceeEEEEEEe
Q 029535 70 CNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG-G---SVRNLSYRLRA 124 (192)
Q Consensus 70 ~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~-~---~~~~~~y~L~~ 124 (192)
.... ...|.|+|+|++.+++|++||.+.|+|.++..... + ...+.||.+..
T Consensus 71 ~p~~----~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 71 FPPL----CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred CCCc----CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 4221 14799999999998899999999999999965321 1 23567888864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=126.48 Aligned_cols=107 Identities=17% Similarity=0.289 Sum_probs=83.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ .+ +..||||+|.+.+ ++ ....++||++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 18 L~V~vi~a~~L~~~~--~~-~~~dpyv~v~l~~----~~-~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l-~~--~~ 85 (127)
T cd04030 18 LIVTVHKCRNLPPCD--SS-DIPDPYVRLYLLP----DK-SKSTRRKTSVKK-DNLNPVFDETFEFPVSLEEL-KR--RT 85 (127)
T ss_pred EEEEEEEEECCCCcc--CC-CCCCceEEEEEEc----CC-CCCceEeccccc-CCCCCEECeEEEEecCHHHh-cC--CE
Confidence 689999999999988 33 5899999998743 11 114688999987 47999999999999876332 22 48
Q ss_pred EEEEEEEccCC--CCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLI--SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~--~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|.+.+ +++++||++.|+|.++... .....||+|
T Consensus 86 l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L 126 (127)
T cd04030 86 LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS---KGFTQWYDL 126 (127)
T ss_pred EEEEEEECCcccCCCCceEEEEEEeccccccc---CCccceEEC
Confidence 99999999875 5789999999999998542 223568876
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=124.68 Aligned_cols=107 Identities=22% Similarity=0.371 Sum_probs=81.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +.+||||++.+. ++ +.++.+|++.+ ++.||.|||+|.|.....+...+ ..
T Consensus 18 L~v~v~~a~~L~~~d--~~-~~~dpyv~v~~~------~~-~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~--~~ 84 (125)
T cd08386 18 LTLKILKAVELPAKD--FS-GTSDPFVKIYLL------PD-KKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQ--RV 84 (125)
T ss_pred EEEEEEEecCCCCcc--CC-CCCCceEEEEEC------CC-CCcceeeeeec-CCCCCccceeEEEcccCHHHhCC--CE
Confidence 689999999999887 33 579999999762 22 13578999987 58999999999997422111122 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|+|++.++++++||++.++|+++... .....||.|.
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~l~ 124 (125)
T cd08386 85 LYLQVLDYDRFSRNDPIGEVSLPLNKVDLT---EEQTFWKDLK 124 (125)
T ss_pred EEEEEEeCCCCcCCcEeeEEEEecccccCC---CCcceEEecC
Confidence 999999999888899999999999999642 2245688763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=120.70 Aligned_cols=115 Identities=20% Similarity=0.370 Sum_probs=83.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.. +.+||||.+.+ ++ ..+++|++.+ + .||.|||+|.|.+....+ ....
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~------~~---~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~---~~~~ 61 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSL------DQ---VEVARTKTVE-K-LNPFWGEEFVFDDPPPDV---TFFT 61 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEE------CC---EEeEecceEE-C-CCCcccceEEEecCCccc---cEEE
Confidence 78999999999865 37899999976 32 2457999886 4 999999999999977321 1247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f 140 (192)
|.|.++|.+...++..+|. ++|..+.. +.....||+|...++ ++..|+|+|.++|
T Consensus 62 l~i~v~d~~~~~~~~~~g~--v~l~~~~~---~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 62 LSFYNKDKRSKDRDIVIGK--VALSKLDL---GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecccCCCeeEEEE--EEecCcCC---CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 8888888876545555555 55554432 123456999975443 3578999999986
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=127.44 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=92.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|++|++|+.++ ||||+|.+ ++ ...+||++.. ++.||.|||.|.|...+ . ...
T Consensus 13 L~v~V~EAk~Lp~~~--------~~Y~~i~L------d~---~~vaRT~v~~-~~~nP~W~E~F~f~~~~-~-----~~~ 68 (146)
T cd04013 13 LKLWIIEAKGLPPKK--------RYYCELCL------DK---TLYARTTSKL-KTDTLFWGEHFEFSNLP-P-----VSV 68 (146)
T ss_pred EEEEEEEccCCCCcC--------CceEEEEE------CC---EEEEEEEEEc-CCCCCcceeeEEecCCC-c-----ccE
Confidence 689999999997542 79999987 42 3567999986 47899999999998766 2 247
Q ss_pred EEEEEEEcc-CC---CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCC---------cccEEEEEEEEEeecCCCC
Q 029535 81 IYLQLYTKT-LI---SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGS---------RGHGVVNLAIKLEPVVPDT 147 (192)
Q Consensus 81 L~veV~d~~-~~---~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~---------k~~G~l~l~v~f~~~~~~~ 147 (192)
|.|.|++.+ .. .++++||.+.||+.++... .....||+|...+|+ +..+.|+++++|.+....|
T Consensus 69 l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 69 ITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEccCccccccCCcEEEEEEEEHHHhcCC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 999997543 22 2678999999999999742 334569999987763 2336999999999875433
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=124.28 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=80.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEccc-CccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDC-NAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~-~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+. .....+.+|++++ ++.||+|||+|.|.+.. .++ . ..
T Consensus 18 L~V~vi~a~~L~~~~--~~-~~~dpyv~v~l~~~-----~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l-~--~~ 85 (125)
T cd04031 18 LIVTVLQARDLPPRD--DG-SLRNPYVKVYLLPD-----RSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETL-K--ER 85 (125)
T ss_pred EEEEEEEecCCCCcC--CC-CCCCCEEEEEEccC-----CCccccccccccC-CCCCCccccEEEEcccCHHHh-C--CC
Confidence 689999999999987 33 58999999987321 1113578999886 58999999999998533 121 1 24
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|+|++.++++++||.+.++|++... . + ...||+|
T Consensus 86 ~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~-~--~~~W~~L 124 (125)
T cd04031 86 TLEVTVWDYDRDGENDFLGEVVIDLADALL-D-D--EPHWYPL 124 (125)
T ss_pred EEEEEEEeCCCCCCCcEeeEEEEecccccc-c-C--CcceEEC
Confidence 899999999988889999999999999432 1 2 2358887
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=124.03 Aligned_cols=103 Identities=24% Similarity=0.344 Sum_probs=83.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||++.+ ++ ..+.+|++.. ++.||.|||+|.|.+.+. ...
T Consensus 3 L~V~Vi~a~~L~~~d--~~-g~~DPYv~v~~------~~---~~~~kT~~~~-~t~~P~Wne~f~~~v~~~------~~~ 63 (120)
T cd04045 3 LRLHIRKANDLKNLE--GV-GKIDPYVRVLV------NG---IVKGRTVTIS-NTLNPVWDEVLYVPVTSP------NQK 63 (120)
T ss_pred EEEEEEeeECCCCcc--CC-CCcCCEEEEEE------CC---EEeeceeEEC-CCcCCccCceEEEEecCC------CCE
Confidence 689999999999987 34 58999999976 22 2568899875 589999999999998762 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
|.|+|+|++.++.|++||++.++|.++..... .-||.|.+.+
T Consensus 64 L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~----~~~~~~~~~~ 105 (120)
T cd04045 64 ITLEVMDYEKVGKDRSLGSVEINVSDLIKKNE----DGKYVEYDDE 105 (120)
T ss_pred EEEEEEECCCCCCCCeeeEEEEeHHHhhCCCC----CceEEecCCC
Confidence 99999999998889999999999999975422 3488888643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=127.87 Aligned_cols=131 Identities=17% Similarity=0.240 Sum_probs=95.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEE-cCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCc--cc-cC
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITT-YPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNA--FF-AN 76 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~-y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~--l~-~~ 76 (192)
.+++|+.|.+++.... .-.+..||||++.+ |+ ++ +.++.||++++ ++.||+|||+|.|.+.... +. .-
T Consensus 4 ~el~i~~~~~~~l~~~-~~~~~~DpYVk~~l~~p-----~~-~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l 75 (155)
T cd08690 4 IELTIVRCIGIPLPSG-WNPKDLDTYVKFEFPYP-----NE-EPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVF 75 (155)
T ss_pred eEEEEEEeeccccCCC-cCCCCCCeEEEEEEecC-----CC-CCceeecCccc-CCCCCcccceEEEEeccccchhhhhc
Confidence 4799999999654431 12357999999985 33 22 35799999997 5899999999999996521 00 00
Q ss_pred ceeEEEEEEEEccCC-CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 77 RYACIYLQLYTKTLI-SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 77 ~~~~L~veV~d~~~~-~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
....|.|+|||++.+ .+|++||++.++|+.+....+ ...+++|.+... ...|.|++.++.-.+
T Consensus 76 ~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~---~~~~~~L~~~~k-~~Gg~l~v~ir~r~p 139 (155)
T cd08690 76 KRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE---IHESVDLMDGRK-ATGGKLEVKVRLREP 139 (155)
T ss_pred cCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc---ceEEEEhhhCCC-CcCCEEEEEEEecCC
Confidence 114699999999876 579999999999999964322 234899885332 567899999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=121.43 Aligned_cols=103 Identities=22% Similarity=0.332 Sum_probs=81.8
Q ss_pred cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeE
Q 029535 19 FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLG 98 (192)
Q Consensus 19 ~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG 98 (192)
+.|.+||||.+.+ ++ ...++|++++ ++.||.|||+|.|.+.+. . ...|.|+|+|++.+ +|++||
T Consensus 9 ~~G~~dPYv~v~v------~~---~~~~kT~v~~-~t~nP~Wne~f~f~v~~~---~--~~~l~i~v~d~~~~-~d~~iG 72 (111)
T cd04052 9 KTGLLSPYAELYL------NG---KLVYTTRVKK-KTNNPSWNASTEFLVTDR---R--KSRVTVVVKDDRDR-HDPVLG 72 (111)
T ss_pred cCCCCCceEEEEE------CC---EEEEEEeeec-cCCCCccCCceEEEecCc---C--CCEEEEEEEECCCC-CCCeEE
Confidence 3468999999976 32 2467999876 489999999999999762 1 24799999999988 899999
Q ss_pred EEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 99 WCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 99 ~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
.+.++|+++.... .....||+|. + +++|.|++++.|.|+
T Consensus 73 ~~~v~L~~l~~~~--~~~~~w~~L~---~-~~~G~i~~~~~~~p~ 111 (111)
T cd04052 73 SVSISLNDLIDAT--SVGQQWFPLS---G-NGQGRIRISALWKPV 111 (111)
T ss_pred EEEecHHHHHhhh--hccceeEECC---C-CCCCEEEEEEEEecC
Confidence 9999999996432 2234689985 3 468999999999885
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=125.04 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=77.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||+|.+.+. +...+..+.||++++ ++.||+|||+|.|.+..... ......
T Consensus 18 L~V~Vi~A~~L~~~~--~~-g~~dPyv~v~l~~~---~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~-~~~~~~ 89 (133)
T cd04009 18 LRVEILNARNLLPLD--SN-GSSDPFVKVELLPR---HLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQC-SVEGAL 89 (133)
T ss_pred EEEEEEEeeCCCCcC--CC-CCCCCEEEEEEECC---CcCccccccccccCc-CCCCCccCCEEEEEechhhc-ccCCCE
Confidence 679999999999987 33 58999999986321 000013578999987 57999999999999865211 111248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|||++.+++|++||++.++|.++..
T Consensus 90 l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 90 LLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999988889999999999999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=126.87 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=76.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ..+.+||||+|.+++ ++ .+..+.||++++ ++.||+|||+|.|.++...+ +. ..
T Consensus 17 L~V~Vi~A~nL~~~~---~~g~~DpyVkv~l~~----~~-~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l-~~--~~ 84 (136)
T cd08406 17 LTVVVVKARNLVWDN---GKTTADPFVKVYLLQ----DG-RKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVL-QD--LS 84 (136)
T ss_pred EEEEEEEeeCCCCcc---CCCCCCeEEEEEEEe----CC-ccccccCCcccc-CCCCCeeceeEEEECCHHHh-CC--cE
Confidence 689999999999887 236899999998753 22 123577899886 58999999999999987432 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.++++++||.+.|.....
T Consensus 85 l~~~V~~~d~~~~~~~iG~v~lg~~~~ 111 (136)
T cd08406 85 LRVTVAESTEDGKTPNVGHVIIGPAAS 111 (136)
T ss_pred EEEEEEeCCCCCCCCeeEEEEECCCCC
Confidence 999999999888999999999987643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=120.23 Aligned_cols=106 Identities=17% Similarity=0.345 Sum_probs=81.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+. ..+..||||++.+.. + ..+..+|++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~------~-~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l-~~--~~ 82 (123)
T cd08390 16 LTVSLIKARNLPPRTK--DVAHCDPFVKVCLLP------D-ERRSLQSKVKR-KTQNPNFDETFVFQVSFKEL-QR--RT 82 (123)
T ss_pred EEEEEEEecCCCCccC--CCCCCCcEEEEEEee------C-CCCceEeeeEc-CCCCCccceEEEEEcCHHHh-cc--cE
Confidence 6899999999998862 135799999997621 1 13567899886 58999999999999876322 11 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|.+.++++++||++.++|.++.... ....|++|
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~w~~L 121 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK---GGVVWRDL 121 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecCC---CceEEEeC
Confidence 9999999998878999999999999996432 23457776
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=126.37 Aligned_cols=96 Identities=16% Similarity=0.301 Sum_probs=77.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+.|+||+..+.+..+ .+||||.|.+.. ++ ++..+.||++++ ++.||+|||+|.|.++++.+ .. ..
T Consensus 17 L~V~V~karnL~~~d~~~~~-~~DpYVKv~l~~----~~-~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L-~~--~~ 86 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLL-GIDVSVKVTLKH----QN-AKLKKKQTKRAK-HKINPVWNEMIMFELPSELL-AA--SS 86 (138)
T ss_pred EEEEEEEecCCCccccCCCC-CCCeEEEEEEEc----CC-cccceeccceee-CCCCCccccEEEEECCHHHh-Cc--cE
Confidence 68999999999988721122 489999998743 22 224578999886 58999999999999987432 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|+|++.++++++||.+.+++..
T Consensus 87 L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 87 VELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEEEeCCCCcCcceeceEEecCcC
Confidence 99999999999999999999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-17 Score=125.88 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=82.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+ + +.+..+.+|++++ ++.||.|||+|.|.+....+ . ...
T Consensus 15 L~V~Vi~a~~L~~~d--~~-~~~DpyV~v~l~~----~-~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l-~--~~~ 82 (133)
T cd08384 15 LIVGIIRCVNLAAMD--AN-GYSDPFVKLYLKP----D-AGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDL-A--KKT 82 (133)
T ss_pred EEEEEEEEcCCCCcC--CC-CCCCcEEEEEEEc----C-CCccCCceeeeEe-ccCCCCcccEEEEECCHHHh-C--CCE
Confidence 689999999999987 33 5899999998732 1 1123578999987 58999999999999876322 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|+|++.+++|++||.+.+++.... +....||++...
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~~~-----~~~~~W~~~l~~ 122 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINAKG-----ERLRHWLDCLKN 122 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCCCC-----chHHHHHHHHhC
Confidence 9999999998888999999999998532 122347777654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=118.39 Aligned_cols=110 Identities=21% Similarity=0.342 Sum_probs=79.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCC-ccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKH-CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~-~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|+|+|++|+||+ +..||||++.+ +++.. ..++||++++ ++.||+|||+|.|.+.. . .
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v------~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~-s------~ 58 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEV------DSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG-S------Q 58 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEE------cCccccceeeeeeeec-CCCCCccceEEEEEeCC-C------C
Confidence 789999999996 24799999976 32211 3679999996 58999999999999975 2 4
Q ss_pred EEEEEEEEc-------cCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 80 CIYLQLYTK-------TLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 80 ~L~veV~d~-------~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
.|.+.|||+ +.++.|++||++.|.|..=..... ..+.....| +| =+|+++++|
T Consensus 59 ~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~-~~~~~~~~~---~~----~~~~~s~~~ 118 (118)
T cd08686 59 TLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTK-KWQEKVISM---NG----ITVNLSIKF 118 (118)
T ss_pred EEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccC-CeeEEEEEe---cC----EEEEEEEeC
Confidence 899999997 355689999999988864322222 223334443 22 267777765
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=126.15 Aligned_cols=114 Identities=13% Similarity=0.214 Sum_probs=84.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.+ ++ ....+.||++++ ++.||.|||+|.|.+....+ + ...
T Consensus 17 L~V~vi~a~~L~~~d--~~-g~~Dpyv~v~l~~----~~-~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~-~--~~~ 84 (136)
T cd08404 17 LTVVVLKARHLPKMD--VS-GLADPYVKVNLYY----GK-KRISKKKTHVKK-CTLNPVFNESFVFDIPSEEL-E--DIS 84 (136)
T ss_pred EEEEEEEeeCCCccc--cC-CCCCeEEEEEEEc----CC-ceeeeEcCcccc-CCCCCccCceEEEECCHHHh-C--CCE
Confidence 679999999999987 33 5899999998742 11 112467899886 58999999999999876322 2 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG 132 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G 132 (192)
|.|+|+|++.++++++||++.+++.... . ....|+.|.+..| ++.+
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~~~~~~~~--~---~~~~w~~l~~~~~-~~i~ 130 (136)
T cd08404 85 VEFLVLDSDRVTKNEVIGRLVLGPKASG--S---GGHHWKEVCNPPR-RQIA 130 (136)
T ss_pred EEEEEEECCCCCCCccEEEEEECCcCCC--c---hHHHHHHHHhCCC-Ceee
Confidence 9999999999889999999999999831 1 1234777765444 4433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=125.03 Aligned_cols=88 Identities=18% Similarity=0.364 Sum_probs=76.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . +.+||||++.+ + .++.+|++++ ++.||+|||+|.|.+.+. ...
T Consensus 4 L~V~Vi~a~nL~~~d--~--~~sDPYV~v~~------g----~~~~kT~vvk-~t~nP~WnE~f~f~i~~~------~~~ 62 (145)
T cd04038 4 LKVRVVRGTNLAVRD--F--TSSDPYVVLTL------G----NQKVKTRVIK-KNLNPVWNEELTLSVPNP------MAP 62 (145)
T ss_pred EEEEEEeeECCCCCC--C--CCcCcEEEEEE------C----CEEEEeeeEc-CCCCCeecccEEEEecCC------CCE
Confidence 689999999999887 3 47999999976 2 3689999987 489999999999999772 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|||++.+++|++||.+.+++.++..
T Consensus 63 l~~~V~D~d~~~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 63 LKLEVFDKDTFSKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhhh
Confidence 99999999998899999999999999964
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=122.19 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=75.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||+|.+.. ++.+..+.+|++++ ++.||.|||+|.|.+..+.+ . ...
T Consensus 17 L~v~vi~a~~L~~~~--~~-g~~dpyV~v~l~~-----~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~-~--~~~ 84 (136)
T cd08405 17 ITVNIIKARNLKAMD--IN-GTSDPYVKVWLMY-----KDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERL-R--ETT 84 (136)
T ss_pred EEEEEEEeeCCCccc--cC-CCCCceEEEEEEe-----CCCccccccCccee-CCCCCcccceEEEeCCHHHh-C--CCE
Confidence 689999999999887 33 5899999998632 11123567899886 58999999999999875222 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.+++|++||.+.+++.+.
T Consensus 85 l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 85 LIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EEEEEEECCCCCCCcEeEEEEECCccC
Confidence 999999999888899999999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=120.48 Aligned_cols=111 Identities=22% Similarity=0.393 Sum_probs=84.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccc------
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFF------ 74 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~------ 74 (192)
|.|+|++|++|+.+. . +.+||||+|.+.. +...++++|+++. ++.||.|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~~---~-g~~dPyv~v~~~~------~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~-~~~~~~~~ 68 (137)
T cd08675 1 LSVRVLECRDLALKS---N-GTCDPFARVTLNY------SSKTDTKRTKVKK-KTNNPRFDEAFYFELTIG-FSYEKKSF 68 (137)
T ss_pred CEEEEEEccCCCccc---C-CCCCcEEEEEEec------CCcCCeeccceee-CCCCCCcceEEEEEcccc-cccccccc
Confidence 789999999998872 2 5899999997622 1124688999987 489999999999998762 10
Q ss_pred -----cCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 75 -----ANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 75 -----~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
+.....|.|+|||++.++++++||.+.++|.++... .....||+|...+
T Consensus 69 ~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 69 KVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred ccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 001248999999999887899999999999998632 1234589987653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=125.58 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=81.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc-cCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD-CNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~-~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ . .+.+||||++.+.. ++.+.+++||+++++ +.||.|||+|.|.+. ...+ . ..
T Consensus 29 L~V~Vi~A~nL~~~d--~-~g~~DPYVkv~l~~-----~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l-~--~~ 96 (162)
T cd04020 29 LHVWVKEAKNLPALK--S-GGTSDSFVKCYLLP-----DKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL-S--QA 96 (162)
T ss_pred EEEEEEeeeCCCCCC--C-CCCCCCEEEEEEEc-----CCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh-C--CC
Confidence 689999999999987 3 35899999997742 111246889999874 799999999999853 2122 1 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
.|.|+|||++.+++|++||.+.++++++..... ...||.+.
T Consensus 97 ~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~---~~~w~~~~ 137 (162)
T cd04020 97 CLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ---AVDWMDST 137 (162)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEeCCccccCCC---ccccccCC
Confidence 799999999998889999999999999853221 23466653
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=122.55 Aligned_cols=97 Identities=15% Similarity=0.421 Sum_probs=77.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ . ++..||||++.+... .+ ....+.||++++ ++.||+|||+|.|.++..++ + ...
T Consensus 17 L~V~VikarnL~~~~--~-~~~~dpyVkv~llp~---~~-~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l-~--~~~ 85 (138)
T cd08408 17 LSVEVIKGSNFKNLA--M-NKAPDTYVKLTLLNS---DG-QEISKSKTSIRR-GQPDPEFKETFVFQVALFQL-S--EVT 85 (138)
T ss_pred EEEEEEEecCCCccc--c-CCCCCeeEEEEEEeC---CC-cceeeccceeec-CCCCCcEeeeEEEECCHHHh-C--ccE
Confidence 689999999999987 3 458999999987431 11 112467999986 58999999999999987432 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|+|.+.++++++||++.+++....
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999998889999999999987654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=118.97 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=85.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+. +. ...+++|++.+ ++.||.|||+|.|.+.... . ...
T Consensus 15 l~v~i~~a~nL~~~~--~~-~~~dpyv~v~~~~~---~~--~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~--~--~~~ 81 (131)
T cd04026 15 LTVEVREAKNLIPMD--PN-GLSDPYVKLKLIPD---PK--NETKQKTKTIK-KTLNPVWNETFTFDLKPAD--K--DRR 81 (131)
T ss_pred EEEEEEEeeCCCCcC--CC-CCCCCcEEEEEEcC---CC--CCceecceeec-CCCCCCccceEEEeCCchh--c--CCE
Confidence 579999999999887 33 47999999987321 11 13678999986 5799999999999987621 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
|.|+|+|++.++++++||.+.++|+++... ....||+|.+.+
T Consensus 82 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 82 LSIEVWDWDRTTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred EEEEEEECCCCCCcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 999999998888899999999999999743 234699998653
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=121.07 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=80.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+.. +.....+.+|++++ ++.||+|||+|.|.+..+.+ . ...
T Consensus 16 L~V~vi~a~~L~~~d--~~-g~~DPyV~v~l~~-----~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l-~--~~~ 83 (135)
T cd08410 16 LNVDIIRAKQLLQTD--MS-QGSDPFVKIQLVH-----GLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEEL-E--NVS 83 (135)
T ss_pred EEEEEEEecCCCccc--CC-CCCCeEEEEEEEc-----CCcccceEcCcccc-CCCCCccceeEEEeCCHHHh-C--CCE
Confidence 689999999999988 34 5899999998621 21113467899886 58999999999999965332 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.|+|+|++..+++++||.+.|...... ++ ....|+.+....+
T Consensus 84 l~~~V~d~d~~~~~~~iG~~~l~~~~~~--~~--~~~~W~~l~~~~~ 126 (135)
T cd08410 84 LVFTVYGHNVKSSNDFIGRIVIGQYSSG--PS--ETNHWRRMLNSQR 126 (135)
T ss_pred EEEEEEeCCCCCCCcEEEEEEEcCccCC--ch--HHHHHHHHHhCCC
Confidence 9999999998889999999987654432 11 1123666655433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=120.79 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=72.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+. + .+ +..||||+|.+ ++ +++||++++ ++.||+|||+|.|...... . ...
T Consensus 30 L~V~V~~A~~L~~-d--~~-g~~DPYVkV~~------~~----~~~kT~vi~-~t~nPvWNE~F~f~~~~~~--~--~~~ 90 (127)
T cd04032 30 LTVTVLRATGLWG-D--YF-TSTDGYVKVFF------GG----QEKRTEVIW-NNNNPRWNATFDFGSVELS--P--GGK 90 (127)
T ss_pred EEEEEEECCCCCc-C--cC-CCCCeEEEEEE------CC----ccccCceec-CCCCCcCCCEEEEecccCC--C--CCE
Confidence 6899999999984 4 34 47899999975 32 478999996 5799999999999753311 1 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|||++.+++|++||.+.++|....
T Consensus 91 L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 91 LRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 9999999999889999999999999654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=120.44 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=75.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ . .+.+||||+|.+.+ ++ ....+.+|++.+ ++.||.|||+|.|.+....+ +. ..
T Consensus 17 l~V~Vi~a~~L~~~d--~-~g~~dpyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l-~~--~~ 84 (136)
T cd08402 17 LTVVILEAKNLKKMD--V-GGLSDPYVKIHLMQ----NG-KRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQI-QK--VH 84 (136)
T ss_pred EEEEEEEeeCCCccc--C-CCCCCCeEEEEEEE----CC-cccceeecccee-CCCCCcccceEEEECCHHHh-CC--CE
Confidence 689999999999887 3 35899999998621 11 113467899875 68999999999999876322 11 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.+++|++||.+.|++...
T Consensus 85 l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 85 LIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEEEEEeCCCCCCCceeEEEEECCccC
Confidence 999999999988899999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=120.97 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=76.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+++.. .+..||||+|.+++. + ++..+.||++.++...||+|||+|.|.++. +.. ...
T Consensus 16 LtV~VikarnL~~~~~---~~~~dpYVKV~L~~~----~-k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~~---~v~ 83 (135)
T cd08692 16 IQLQILEAQNLPSSST---PLTLSFFVKVGMFST----G-GLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QEH---GIQ 83 (135)
T ss_pred EEEEEEEccCCCcccC---CCCCCcEEEEEEEEC----C-CcceeecCccEECCCCCceecceEEEeCCc-hhh---eeE
Confidence 6899999999998741 346799999998752 2 235688999987544579999999999987 322 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.++++++||.+.+.....
T Consensus 84 l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 84 FLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEeCCCCcCCceEEEEEECCccC
Confidence 999999999888999999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=119.94 Aligned_cols=94 Identities=19% Similarity=0.378 Sum_probs=74.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||+|.+.. ++ .+..+.+|++.+ ++.||.|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~A~~L~~~d--~~-g~~dpyvkv~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~-~~--~~ 83 (134)
T cd08403 16 LTLTIIKARNLKAMD--IT-GFSDPYVKVSLMC----EG-RRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV-DN--VS 83 (134)
T ss_pred EEEEEEEeeCCCccc--cC-CCCCceEEEEEEe----CC-cccceecCCccc-CCCCCcccceEEEECCHHHh-CC--CE
Confidence 689999999999988 34 5899999998632 11 113467899875 68999999999999876332 21 46
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|+|++.++++++||++.|++..
T Consensus 84 l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 84 LIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred EEEEEEECCCCCCCceeEEEEECCCC
Confidence 99999999998889999999999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=115.89 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=76.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|+|+|++|++|++.+ .+ +..||||++.+.+ +..+..+.+|++++ ++.||.|||+|.|. +.... .. ..
T Consensus 17 L~V~v~~a~~L~~~~--~~-~~~dpyv~v~~~~-----~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~-~~--~~ 84 (123)
T cd04035 17 LHCTIIRAKGLKAMD--AN-GLSDPYVKLNLLP-----GASKATKLRTKTVH-KTRNPEFNETLTYYGITEED-IQ--RK 84 (123)
T ss_pred EEEEEEEeeCCCCCC--CC-CCCCceEEEEEec-----CCCCCCceeeeeec-CCCCCCccceEEEcCCCHHH-hC--CC
Confidence 689999999999887 33 5899999998743 11123578999986 57999999999996 44311 11 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFP 110 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~ 110 (192)
.|.|+|||++.+ ++++||++.++|++|...
T Consensus 85 ~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 85 TLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 799999999887 899999999999999743
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=120.32 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=75.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ + +.+||||+|.+.+ ++....+.||++.+ ++.||+|||+|.|.++..++ .. ..
T Consensus 17 L~V~V~~a~nL~~~~---~-~~~d~yVkv~l~~-----~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l-~~--~~ 83 (137)
T cd08409 17 LTVVVLRARGLRQLD---H-AHTSVYVKVSLMI-----HNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQL-DT--AS 83 (137)
T ss_pred EEEEEEEecCCCccc---C-CCCCeEEEEEEEE-----CCEEeeeeecccEe-CCCCCcccceEEEECCHHHh-Cc--cE
Confidence 689999999999876 2 4799999998743 11112467999876 68999999999999986443 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|++.+.++++++||++.|+....
T Consensus 84 L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 84 LSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EEEEEEeCCCCCCcceEEEEEECCccc
Confidence 999999999888899999999997554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=116.19 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=74.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .+ +.+||||++.+ ++. ..+.||.+++ ++.||.|||+|.|.+... + ...
T Consensus 2 lrV~Vi~a~~L~~~d--~~-g~~DPYv~v~~------~~~--~~~~kT~~v~-~t~nP~Wne~f~f~~~~~---~--~~~ 64 (124)
T cd04037 2 VRVYVVRARNLQPKD--PN-GKSDPYLKIKL------GKK--KINDRDNYIP-NTLNPVFGKMFELEATLP---G--NSI 64 (124)
T ss_pred EEEEEEECcCCCCCC--CC-CCCCcEEEEEE------CCe--eccceeeEEE-CCCCCccceEEEEEecCC---C--CCE
Confidence 589999999999988 34 58999999976 221 2345787776 489999999999987541 1 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|+|++.+++|++||++.++|.+...
T Consensus 65 L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 65 LKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 99999999988899999999999998864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=144.53 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=102.6
Q ss_pred CEEEEEEeeCCCCCCC-CC-------------c-CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEE
Q 029535 1 MEITILSAQGLKNTSF-TL-------------F-SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFY 65 (192)
Q Consensus 1 LeVtVisAk~L~~~~~-~~-------------~-~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~ 65 (192)
|+|+|+.|++|++.+. +. + .+.+||||+|.+ + ++...||+++.+...||.|||.|+
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~------~---~a~v~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL------E---KARVGRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe------C---CcEEEEEeecCCCCCCCccccceE
Confidence 7999999999997420 00 1 135799999987 3 257899999976567999999999
Q ss_pred EEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE--EEEEEEEEeec
Q 029535 66 VPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG--VVNLAIKLEPV 143 (192)
Q Consensus 66 f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G--~l~l~v~f~~~ 143 (192)
+++.+. .+.+.|.|+|.+.+ +..+||.+.||+.+|++.. .-..||++.+.+|+..+| .||++++|.++
T Consensus 81 i~~ah~------~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 81 IYCAHM------ASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred EeeccC------cceEEEEEecCCcc-CceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999993 36899999999987 6679999999999997632 123489999988843333 99999999998
Q ss_pred CCCCC
Q 029535 144 VPDTS 148 (192)
Q Consensus 144 ~~~~~ 148 (192)
.+++.
T Consensus 151 ~~~~~ 155 (808)
T PLN02270 151 TKDRN 155 (808)
T ss_pred ccCcc
Confidence 87763
|
|
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=120.44 Aligned_cols=105 Identities=20% Similarity=0.423 Sum_probs=77.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCC-C------------------CCccEEEeEeecCCCCCCeec
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSG-D------------------KHCHVYRTRVDDHGGVNPTWG 61 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~-d------------------~~~~~~rT~v~~~~g~nP~WN 61 (192)
|.|+|++|++|.+.+ .. +.+||||.|.+..-..-.+ + ...+.++|+++. ++.||.||
T Consensus 30 L~V~vi~a~~L~~~d--~~-g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~Wn 105 (153)
T cd08676 30 LKVTVIEAKGLLAKD--VN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPVWN 105 (153)
T ss_pred EEEEEEeccCCcccC--CC-CCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCccc
Confidence 689999999999988 34 5899999997632100000 0 001357899886 58999999
Q ss_pred eEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 62 DKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 62 E~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|+|.|.+... .. ..|.|+|||++ |++||.+.++++++... + ...||+|
T Consensus 106 E~F~f~v~~~---~~--~~L~i~V~D~d----d~~IG~v~i~l~~l~~~--~--~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDV---SN--DQLHLDIWDHD----DDFLGCVNIPLKDLPSC--G--LDSWFKL 153 (153)
T ss_pred cEEEEEeccC---CC--CEEEEEEEecC----CCeEEEEEEEHHHhCCC--C--CCCeEeC
Confidence 9999999651 12 47999999986 78999999999999732 2 2458875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=136.13 Aligned_cols=127 Identities=17% Similarity=0.318 Sum_probs=100.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+.|++|+.++ .++..||||++.+. +|+ ..+.+|++++ ++.||.|||+|.|.+...++ + ...
T Consensus 169 L~V~V~qa~~Lp~~d---~~g~sdpyVK~~ll------Pdk-~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l-~--~~~ 234 (421)
T KOG1028|consen 169 LTVRVIQAHDLPAKD---RGGTSDPYVKVYLL------PDK-KGKFKTRVHR-KTLNPVFNETFRFEVPYEEL-S--NRV 234 (421)
T ss_pred EEEEEEEecCCCccc---CCCCCCCeeEEEEc------CCC-CCcceeeeee-cCcCCccccceEeecCHHHh-c--cCE
Confidence 689999999999987 34689999999763 443 5789999997 58999999999999877332 2 358
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC--CCCcccEEEEEEEEEeecC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR--DGSRGHGVVNLAIKLEPVV 144 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~--~G~k~~G~l~l~v~f~~~~ 144 (192)
|.+.|||.++|+++++||++.++|..+..... ...|+.+... ......|+|.+++.+.|..
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~---~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLST---TLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCcccccccc---ceeeeccccccCCcccccceEEEEEEeecCC
Confidence 99999999999999999999999998853221 3457877763 1212348999999999963
|
|
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=114.56 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=83.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +.+||||++.+.+. + ....+++|++.. ++.||.|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~a~~L~~~~--~~-~~~dpyv~v~l~~~----~-~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l-~~--~~ 83 (134)
T cd00276 16 LTVVVLKARNLPPSD--GK-GLSDPYVKVSLLQG----G-KKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQL-EE--VS 83 (134)
T ss_pred EEEEEEEeeCCCCcc--CC-CCCCcEEEEEEEcC----C-eEeeeecCccee-cCCCCeeeeeEEEECCHHHh-CC--cE
Confidence 689999999999887 23 57999999987431 1 113467999886 58999999999999977322 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.|+|+|.+.++++++||.+.++|.+. .. ....||+|....+
T Consensus 84 l~~~v~d~~~~~~~~~lG~~~i~l~~~--~~---~~~~W~~l~~~~~ 125 (134)
T cd00276 84 LVITVVDKDSVGRNEVIGQVVLGPDSG--GE---ELEHWNEMLASPR 125 (134)
T ss_pred EEEEEEecCCCCCCceeEEEEECCCCC--Cc---HHHHHHHHHhCCC
Confidence 999999998877899999999999992 11 1234788776433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=112.15 Aligned_cols=105 Identities=20% Similarity=0.326 Sum_probs=79.3
Q ss_pred EEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEE
Q 029535 4 TILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYL 83 (192)
Q Consensus 4 tVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~v 83 (192)
-.|+|++|++.+ .+ +.+||||+|.+.+... ......++|++++ ++.||+|||+|.|.+..+. ...|.|
T Consensus 5 ~~i~a~~L~~~d--~~-g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~-----~~~l~~ 72 (120)
T cd04048 5 LSISCRNLLDKD--VL-SKSDPFVVVYVKTGGS---GQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEE-----VQKLRF 72 (120)
T ss_pred EEEEccCCCCCC--CC-CCCCcEEEEEEEcCCC---CceEEeccEeEeC-CCCCCCceEEEEEEEEeEe-----eeEEEE
Confidence 358999999988 44 5899999998743210 0112468999997 5899999999999865411 257999
Q ss_pred EEEEccC----CCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 84 QLYTKTL----ISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 84 eV~d~~~----~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
+|||++. ++++++||++.+++.+|.... -...+|+|.
T Consensus 73 ~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~ 113 (120)
T cd04048 73 EVYDVDSKSKDLSDHDFLGEAECTLGEIVSSP---GQKLTLPLK 113 (120)
T ss_pred EEEEecCCcCCCCCCcEEEEEEEEHHHHhcCC---CcEEEEEcc
Confidence 9999986 788999999999999997543 234578873
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-15 Score=135.83 Aligned_cols=122 Identities=19% Similarity=0.296 Sum_probs=89.6
Q ss_pred CEEEEEEeeCCC-CCCCCC-cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCce
Q 029535 1 MEITILSAQGLK-NTSFTL-FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~-~~~~~~-~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~ 78 (192)
|.|+||+|++|. +.+... -....||||+|+++|+. .| ..+.+|++. +||.||+|||+|.|.+...+ .
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp---~D--~~~~kT~v~-nNg~nPvWne~F~F~i~~PE-----L 479 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVP---HD--EKIMKTTVK-NNEWKPTWGEEFTFPLTYPD-----L 479 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeecc---CC--cceeEEEeC-CCCcCceecceeEEEEEccC-----c
Confidence 679999999985 211000 01368999999999863 33 246678754 67999999999999987643 3
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
+.|+|+|+|++..++|++||.+.+|+..|.... .+.+|++++|.+..+ ..|-++|
T Consensus 480 AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy------R~VpL~~~~g~~l~~-~~Ll~~f 534 (537)
T PLN02223 480 ALISFEVYDYEVSTADAFCGQTCLPVSELIEGI------RAVPLYDERGKACSS-TMLLTRF 534 (537)
T ss_pred eEEEEEEEecCCCCCCcEEEEEecchHHhcCCc------eeEeccCCCcCCCCC-ceEEEEE
Confidence 799999999998778999999999999997433 257899888844233 3444443
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=140.16 Aligned_cols=126 Identities=22% Similarity=0.357 Sum_probs=99.7
Q ss_pred CEEEEEEeeCC-CCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGL-KNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L-~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|+|+|++++ ++.+.+.|+...||||.|++.|+ ..| +.+.+|+++.+||.||.|+|+|+|.+...+ .+
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gv---p~D--~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE-----LA 687 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGV---PAD--CAEQKTKVVKNNGFNPIWDEEFEFQLSVPE-----LA 687 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEccc---ccc--hhhhhceeeccCCcCcccCCeEEEEEeccc-----ee
Confidence 68999999955 45554456678999999999886 344 578899988889999999999999998743 47
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEee
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLEP 142 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~~ 142 (192)
.|+|+|.|++..++|+++|..++|+..|..... ..+|.+..|.. ..-.|-+.+++.+
T Consensus 688 liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR------hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 688 LIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR------HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEEEEEecCCCCcccccceeeccHHHhhCcee------eeeecCCCCccccceeEEEEEEEec
Confidence 999999999998889999999999999975432 47888877743 3445666665543
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=101.23 Aligned_cols=85 Identities=24% Similarity=0.518 Sum_probs=68.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|...+ . .+..||||++.+ ++.. ..+++|++..+ +.+|.|||+|.|.+.... ...
T Consensus 1 L~v~I~~a~~L~~~~--~-~~~~~~yv~v~~------~~~~-~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~-----~~~ 64 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD--S-NGKPDPYVRVSV------NGSE-STKYKTKVKKN-TSNPVWNEEFEFPLDDPD-----LDS 64 (85)
T ss_dssp EEEEEEEEESSSSSS--T-TSSBEEEEEEEE------ETTT-CEEEEECCBSS-BSSEEEEEEEEEEESHGC-----GTE
T ss_pred CEEEEEEEECCCCcc--c-CCcccccceeec------ceee-eeeeeeeeeec-cccceeeeeeeeeeeccc-----ccc
Confidence 789999999999876 2 248999999987 2221 24689999874 699999999999976632 235
Q ss_pred EEEEEEEccCCCCCeeeEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~ 101 (192)
|.|+|||++.+++|++||+++
T Consensus 65 l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 65 LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEEETSSSSEEEEEEEE
T ss_pred eEEEEEECCCCCCCCEEEEEC
Confidence 999999999988899999985
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=135.39 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=93.6
Q ss_pred CEEEEEEeeCCCCCCC-CCcC--CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTSF-TLFS--SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~-~~~~--~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|.|+||||++|+.... +.++ ...||||+|.++|+. .| ..+.+|+++.+ +.||+|||+|.|.+...+
T Consensus 472 L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p---~D--~~~~kTkvi~n-N~nPvWnE~F~F~i~~PE----- 540 (599)
T PLN02952 472 LKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVP---AD--NAKKKTKIIED-NWYPAWNEEFSFPLTVPE----- 540 (599)
T ss_pred EEEEEEECcccCCCCccccCCccCCCCceEEEEEeccC---CC--CcceeeeeccC-CCCcccCCeeEEEEEcCC-----
Confidence 6799999999853210 0111 246999999999863 33 36779999976 499999999999877632
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
.+.|+|+|+|++..++|++||++.+||..|.... .+.+|++.+| +..+.++|-++|.
T Consensus 541 LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy------R~VpL~~~~G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 541 LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI------RSVPLHDKKG-EKLKNVRLLMRFI 597 (599)
T ss_pred ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc------eeEeCcCCCC-CCCCCEEEEEEEE
Confidence 3789999999988778999999999999997432 2789988888 5555666666653
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=104.35 Aligned_cols=96 Identities=21% Similarity=0.369 Sum_probs=72.5
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc-eeEE
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR-YACI 81 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~-~~~L 81 (192)
+-.++|++|+..+ .+ +.+||||+|.+.+ .......+++|++++ ++.||+|| +|.|++.. +...+ ...|
T Consensus 4 ~~~i~a~~L~~~d--~~-~~~DPyv~v~~~~----~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~--l~~~~~~~~l 72 (110)
T cd04047 4 ELQFSGKKLDKKD--FF-GKSDPFLEISRQS----EDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQK--LCNGDYDRPI 72 (110)
T ss_pred EEEEEeCCCCCCC--CC-CCCCeeEEEEEEC----CCCCEEEEEeeeEec-cCCCCceE-EEEEEHHH--hcCCCcCCEE
Confidence 4568999999988 45 4899999997632 100113568999997 47999999 78887643 11111 2589
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|+|||++.+++|++||.+.+++.+|..
T Consensus 73 ~~~V~d~d~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 73 KIEVYDYDSSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred EEEEEEeCCCCCCcEEEEEEEEHHHHhc
Confidence 9999999998899999999999999973
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=148.60 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+ .+ | +.+||||++.+ +. ..+.||++++ ++.||+|||.|+|.+++.+. ...
T Consensus 1982 L~V~V~~a~nl~-~~---~-~~sdPyv~l~~------g~---~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~----~~~ 2042 (2102)
T PLN03200 1982 LTVTIKRGNNLK-QS---M-GNTNAFCKLTL------GN---GPPRQTKVVS-HSSSPEWKEGFTWAFDSPPK----GQK 2042 (2102)
T ss_pred eEEEEeeccccc-cc---c-CCCCCeEEEEE------CC---CCcccccccC-CCCCCCcccceeeeecCCCC----CCc
Confidence 689999999999 32 4 48999999976 31 2367999997 58999999999998887431 246
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEE---EEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGV---VNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~---l~l~v~f~~ 142 (192)
|+|+|||++.| +++.||.+.|++.++.... ....||+|.+ +| +..|. |++.++|.+
T Consensus 2043 l~iev~d~d~f-~kd~~G~~~i~l~~vv~~~---~~~~~~~L~~-~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2043 LHISCKSKNTF-GKSSLGKVTIQIDRVVMEG---TYSGEYSLNP-ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred eEEEEEecCcc-CCCCCceEEEEHHHHhcCc---eeeeeeecCc-cc-ccCCCcceEEEEEEecC
Confidence 99999999998 4559999999999997532 2345899974 34 45777 999998865
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=131.91 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=90.2
Q ss_pred CEEEEEEeeCCCCCC-CCCcC--CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTS-FTLFS--SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~-~~~~~--~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|.|+|++++++.... ...+. ...||||+|++||+ ..| ..+.+|++. ++|.||+|||+|.|++...+
T Consensus 471 L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gv---p~D--~~~~kT~v~-~n~~nP~Wneef~F~l~vPE----- 539 (598)
T PLN02230 471 LKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGA---PVD--EVMEKTKIE-YDTWTPIWNKEFIFPLAVPE----- 539 (598)
T ss_pred EEEEEEEccCccCCCccccCCCCCCCCceEEEEEEEC---CCC--Ccccceecc-CCCCCCccCCeeEEEEEcCc-----
Confidence 679999999874221 00111 25799999999995 233 256789966 56899999999999877633
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE-EEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG-VVNLAIKL 140 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G-~l~l~v~f 140 (192)
.+.|+|+|+|++...+|++||++.||+..|..... ..+|++++|.+..+ .|-+.++|
T Consensus 540 LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR------~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 540 LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH------AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc------eEeccCCCcCCCCCCeeEEEEEe
Confidence 47999999999887789999999999999975331 57888888854333 34444433
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=128.68 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=89.9
Q ss_pred CEEEEEEeeCCC--CCCCCCcC--CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccC
Q 029535 1 MEITILSAQGLK--NTSFTLFS--SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFAN 76 (192)
Q Consensus 1 LeVtVisAk~L~--~~~~~~~~--~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~ 76 (192)
|.|+|++|+++. ..+. .+. ...||||+|.++|+ ..| ..+.+|+++.+| .||+|||+|.|.+...+
T Consensus 454 L~V~Visgq~~~l~~~~~-~~~~~~~~dpyV~Vei~G~---p~D--~~~~rTk~v~nn-~nP~W~e~f~F~i~~Pe---- 522 (581)
T PLN02222 454 LRVTIYMGEGWYFDFRHT-HFDQYSPPDFYTRVGIAGV---PGD--TVMKKTKTLEDN-WIPAWDEVFEFPLTVPE---- 522 (581)
T ss_pred EEEEEEEcccccCCCCcc-ccCCCCCCCeeEEEEEecc---CCC--cceeeeEecCCC-CCcccCCeeEEEEEcCc----
Confidence 579999999853 2211 111 36799999999986 334 367899999865 89999999999876633
Q ss_pred ceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE-EEEEEEE
Q 029535 77 RYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG-VVNLAIK 139 (192)
Q Consensus 77 ~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G-~l~l~v~ 139 (192)
.+.|+|+|+|++..++|++||++.||+..|...-. ..+|++.+|....+ .|-+.+.
T Consensus 523 -LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR------~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 523 -LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR------AFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred -eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc------eEEccCCCcCCCCCeeEEEEEE
Confidence 47999999999887789999999999999975321 57888888854344 4444443
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=126.59 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=94.5
Q ss_pred CEEEEEEeeCCCCC--CCCC-cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCee-ceEEEEEcccCccccC
Q 029535 1 MEITILSAQGLKNT--SFTL-FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW-GDKFYVPTDCNAFFAN 76 (192)
Q Consensus 1 LeVtVisAk~L~~~--~~~~-~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~W-NE~f~f~v~~~~l~~~ 76 (192)
|.|+||||++|... ..+. -....||||+|+++|+. .| ..+++|+++.+ |.||+| ||+|.|.+...+
T Consensus 433 L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p---~D--~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pE---- 502 (567)
T PLN02228 433 LKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVP---RD--TVSYRTETAVD-QWFPIWGNDEFLFQLRVPE---- 502 (567)
T ss_pred EEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecC---CC--CCcceeeccCC-CCCceECCCeEEEEEEcCc----
Confidence 68999999998321 1000 01258999999999852 33 35689999865 689999 999999976633
Q ss_pred ceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcc-cEEEEEEEEEeec
Q 029535 77 RYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRG-HGVVNLAIKLEPV 143 (192)
Q Consensus 77 ~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~-~G~l~l~v~f~~~ 143 (192)
.+.|+|+|+|++..++|++||++.|||..|...- ...+|++.+|... ...|-+.+.+.+.
T Consensus 503 -LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY------R~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 503 -LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV------RAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred -eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe------eEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 4799999999987778999999999999996422 2578888888553 4467777777664
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-15 Score=130.93 Aligned_cols=107 Identities=17% Similarity=0.288 Sum_probs=85.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|..|++|-+++. .|-+||||.+.+.+ ++ +...++||++++ .+.||+|||+|+|.+.... ....
T Consensus 182 l~v~i~ea~NLiPMDp---NGlSDPYvk~kliP----D~-~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~D----kdrR 248 (683)
T KOG0696|consen 182 LTVTIKEAKNLIPMDP---NGLSDPYVKLKLIP----DP-KNESKQKTKTIK-ATLNPVWNETFTFKLKPSD----KDRR 248 (683)
T ss_pred EEEEehhhccccccCC---CCCCCcceeEEecc----CC-cchhhhhhhhhh-hhcCccccceeEEeccccc----ccce
Confidence 6899999999999984 36899999999843 21 235788999997 5899999999999997732 2257
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|||||++..++++++|...+-+++|...+-. -||.|+.
T Consensus 249 lsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~----GWyKlLs 288 (683)
T KOG0696|consen 249 LSIEVWDWDRTSRNDFMGSLSFGISELQKAPVD----GWYKLLS 288 (683)
T ss_pred eEEEEecccccccccccceecccHHHHhhcchh----hHHHHhh
Confidence 999999999989999999999999999653321 2777764
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=130.50 Aligned_cols=124 Identities=25% Similarity=0.478 Sum_probs=100.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|.+|++|+..+. .+.+..|||+++... | ....||++.+ +..||+|||+|.+.+.. + ...
T Consensus 438 v~vkI~sa~~lk~~d~-~i~~~vDpyit~~~~-------~--r~~gkT~v~~-nt~nPvwNEt~Yi~lns--~----~d~ 500 (1227)
T COG5038 438 VEVKIKSAEGLKKSDS-TINGTVDPYITVTFS-------D--RVIGKTRVKK-NTLNPVWNETFYILLNS--F----TDP 500 (1227)
T ss_pred EEEEEeeccCcccccc-cccCCCCceEEEEec-------c--ccCCccceee-ccCCccccceEEEEecc--c----CCc
Confidence 5899999999999884 567799999999852 1 2456999887 58999999999999875 2 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~ 145 (192)
|.++|||.+++..|+.+|.+.++|..|.+.+ .....-|++++ ++ +..|.|++.++|.|...
T Consensus 501 L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~--~~~ne~~e~~~-~~-k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNP--VKKNELYEFLR-NT-KNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred eeEEEEeccccCCcceeeeEEechHHhhhcc--ccccceeeeec-cC-ccceEEEEeeeeecccC
Confidence 9999999888889999999999999997543 22333577764 34 89999999999999753
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-12 Score=87.90 Aligned_cols=93 Identities=22% Similarity=0.415 Sum_probs=74.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|.... .+ +..+|||.+.+.+ .. .+..+|++..+ ..||.|||+|.|.+.... ...
T Consensus 2 l~i~i~~~~~l~~~~--~~-~~~~~yv~v~~~~------~~-~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~-----~~~ 65 (101)
T smart00239 2 LTVKIISARNLPKKD--KK-GKSDPYVKVSLDG------DP-KEKKKTKVVKN-TLNPVWNETFEFEVPPPE-----LAE 65 (101)
T ss_pred eEEEEEEeeCCCCCC--CC-CCCCceEEEEEeC------Cc-cceEeeeEecC-CCCCcccceEEEEecCcc-----cCE
Confidence 579999999999876 22 4789999998732 10 24789998874 569999999999997721 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|+|.....++.+||.+.+++.++..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHccc
Confidence 99999999876678999999999999864
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.3e-12 Score=86.63 Aligned_cols=90 Identities=21% Similarity=0.461 Sum_probs=73.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|++|++|.... . ....+|||++.+.. ...++|++.. +..||.|||.|.|.+... . ...
T Consensus 1 l~v~i~~~~~l~~~~--~-~~~~~~~v~v~~~~---------~~~~~T~~~~-~~~~P~w~~~~~~~~~~~---~--~~~ 62 (102)
T cd00030 1 LRVTVIEARNLPAKD--L-NGKSDPYVKVSLGG---------KQKFKTKVVK-NTLNPVWNETFEFPVLDP---E--SDT 62 (102)
T ss_pred CEEEEEeeeCCCCcC--C-CCCCCcEEEEEecc---------CceEecceeC-CCCCCcccceEEEEccCC---C--CCE
Confidence 689999999998764 1 24799999998632 2568899886 468999999999998761 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|++.+....+++||.+.+++.++.
T Consensus 63 l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 63 LTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred EEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 9999999988767899999999999987
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-12 Score=120.22 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=91.4
Q ss_pred CEEEEEEeeCCCCCCC--CCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCce
Q 029535 1 MEITILSAQGLKNTSF--TLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~--~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~ 78 (192)
|++||..|+-+...-. ..++...||||+|.+ + ++...|| . +..||.|||.|.+++.+. .
T Consensus 12 l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~------~---~~~v~rt---~-~~~~p~w~e~f~i~~ah~------~ 72 (758)
T PLN02352 12 LEATIFDATPYTPPFPFNCIFLNGKATYVTIKI------G---NKKVAKT---S-HEYDRVWNQTFQILCAHP------L 72 (758)
T ss_pred eEEEEEEeeehhhcccccccccCCCCceEEEEe------C---CcEEecC---C-CCCCCccccceeEEeeee------c
Confidence 7899999984433210 012223399999987 3 2567888 2 456999999999999982 2
Q ss_pred -eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE-EEEEEEEEeecCCCC
Q 029535 79 -ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG-VVNLAIKLEPVVPDT 147 (192)
Q Consensus 79 -~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G-~l~l~v~f~~~~~~~ 147 (192)
+.+.|.|+| +..+||.+.||+.+|+...+ .-.-||++.+.+|+..+| .|+++++|.++.++|
T Consensus 73 ~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 73 DSTITITLKT-----KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred CCcEEEEEec-----CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCc
Confidence 479999999 47899999999999986421 134599999988855556 999999999998876
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=95.22 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=71.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|.+|+||.......|++++||||.+.+ + | ..+.||++. .||+|||.|.|+++. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv------e-d--~~kaRTr~s----rnd~WnE~F~i~Vdk-------~nE 60 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV------E-D--VERARTKPS----RNDRWNEDFEIPVEK-------NNE 60 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE------C-C--EEEEeccCC----CCCcccceEEEEecC-------CcE
Confidence 7899999999998764236678999999986 3 2 468899863 799999999999965 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
+.|.|||... ...-+||..-|+++||..
T Consensus 61 iel~VyDk~~-~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 61 EEVIVYDKGG-DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEEEeCCC-CeecceeeehhhHHHHHH
Confidence 9999999853 244689999999999963
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.2e-12 Score=117.50 Aligned_cols=140 Identities=20% Similarity=0.337 Sum_probs=111.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|..|++|+..+ .+|..||||+|.+ + +....||.++- .+.-|.|.|.|+|.++- .| ..
T Consensus 7 l~vki~E~knL~~~~---~~g~~D~yC~v~l------D---~E~v~RT~tv~-ksL~PF~gEe~~~~iP~-~F-----~~ 67 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYG---PSGMRDCYCTVNL------D---QEEVCRTATVE-KSLCPFFGEEFYFEIPR-TF-----RY 67 (800)
T ss_pred eeEEEeecccCCCCC---CCCCcCcceEEee------c---chhhhhhhhhh-hhcCCccccceEEecCc-ce-----ee
Confidence 679999999999887 3578999999976 3 24678999986 58999999999999987 33 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCCCCCCcc---eecce
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPDTSLDAC---HVIGI 157 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~~~~~~~---~~~~~ 157 (192)
|.|-|||++ ++.|++||++.|.=.+|..-+ +...|.+++-.+++. ..+|+|||.+++.++-++....|. .-.+.
T Consensus 68 l~fYv~D~d-~~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~ 144 (800)
T KOG2059|consen 68 LSFYVWDRD-LKRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQSSGLVCHVLKTRQGL 144 (800)
T ss_pred EEEEEeccc-cccccccceeeeeHHHHhhCC-CCccceeccccCCCh-hhceeEEEEEEeccccCCCcchhhhhhhcccC
Confidence 999999999 889999999999999997644 444555555556776 799999999999998876655441 12466
Q ss_pred eeccC
Q 029535 158 PLICQ 162 (192)
Q Consensus 158 p~~~~ 162 (192)
|..-.
T Consensus 145 P~~~~ 149 (800)
T KOG2059|consen 145 PIING 149 (800)
T ss_pred ceeCC
Confidence 65543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=93.19 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=75.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCC--CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCC--CeeceEEEEEcccCccc--
Q 029535 1 MEITILSAQGLKNTSFTLFSS--RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVN--PTWGDKFYVPTDCNAFF-- 74 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~--~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~n--P~WNE~f~f~v~~~~l~-- 74 (192)
|+|.|..|+++...+.. +.| .+||||++.+.+ + ...+++|.|+. +..| |.||+.|.|++...+..
T Consensus 2 LRViIw~~~~v~~~~~~-~~g~~~sD~yVK~~L~~------~-~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~ 72 (133)
T cd08374 2 LRVIVWNTRDVLNDDTN-ITGEKMSDIYVKGWLDG------L-EEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKK 72 (133)
T ss_pred EEEEEEECcCCcccccc-cCCccccCeEEEEEEcc------C-cccccccceEE-ecCCCCcEEeEEEEEeeecCCccce
Confidence 68999999997655421 233 589999998744 2 13578999987 4788 99999999987651100
Q ss_pred ----------------cCceeEEEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 75 ----------------ANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 75 ----------------~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
......|.++|||.+.++.|++||.+.++|..+..
T Consensus 73 ~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 73 IVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred eEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 01125899999999999999999999999998854
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-12 Score=117.60 Aligned_cols=118 Identities=24% Similarity=0.416 Sum_probs=88.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.+||+.|++|...++ .|++||||++++ + ..+.||+++. +..||+|||+|+|.+.++ ...
T Consensus 297 itltvlcaqgl~akdk---tg~sdpyvt~qv------~----ktkrrtrti~-~~lnpvw~ekfhfechns------tdr 356 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDK---TGKSDPYVTAQV------G----KTKRRTRTIH-QELNPVWNEKFHFECHNS------TDR 356 (1283)
T ss_pred eEEeeeecccceeccc---CCCCCCcEEEee------c----ccchhhHhhh-hccchhhhhheeeeecCC------Cce
Confidence 4689999999998873 368999999986 2 4688999986 689999999999999883 247
Q ss_pred EEEEEEEccCC-----------CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEE--EEEEEEEeec
Q 029535 81 IYLQLYTKTLI-----------SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGV--VNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~-----------~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~--l~l~v~f~~~ 143 (192)
+.+.|||++.- .+|+++|...|-+..|- +++ .+||.|..+.. ....|. ||+++.+.+.
T Consensus 357 ikvrvwded~dlksklrqkl~resddflgqtvievrtls----gem-dvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 357 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS----GEM-DVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred eEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc----cch-hhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 89999997521 25899999999998884 122 35999876422 235664 4555555543
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-11 Score=112.66 Aligned_cols=123 Identities=22% Similarity=0.365 Sum_probs=90.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeec-eEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWG-DKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WN-E~f~f~v~~~~l~~~~~~ 79 (192)
|.|.||.|+.|++.. .+...|||+|++.|.- .+ ..+++|.++.+||+||+|| |+|+|.+.+.+ .+
T Consensus 1067 lsv~vigaRHL~k~g----r~i~cPfVevEiiGa~-~D----t~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-----~A 1132 (1267)
T KOG1264|consen 1067 LSVKVLGARHLPKLG----RSIACPFVEVEIIGAE-YD----TNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-----FA 1132 (1267)
T ss_pred EEEEEeeccccccCC----CCccCCcEEEEEeccc-cC----CCceEEEEeccCCCCCCCCCcceEEEeeCCc-----eE
Confidence 578999999999654 2467899999997742 22 2467777777889999999 99999998854 48
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEeec
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLEPV 143 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~~~ 143 (192)
.|+|.|++++.|+...+||.|..|+..|.... .+.+|.+.-+.. .-..|-+.+.+-++
T Consensus 1133 ~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf------RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1133 FLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF------RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred EEEEEEecccccCCcceeeeeecchhhhhccc------eeeecccCchhhhhhhhheeeeEeccc
Confidence 99999999999988889999999999996532 256765432211 12234455555554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-11 Score=107.63 Aligned_cols=94 Identities=20% Similarity=0.428 Sum_probs=76.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|+.|++|+..+ .++..||||++.++ .++++..+.||.+.+ +..||+|||+|.|.++.+.+ + ...
T Consensus 300 ltv~v~kar~L~~~~---~~~~~d~~Vk~~l~-----~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l-~--~~~ 367 (421)
T KOG1028|consen 300 LTVVVIKARNLKSMD---VGGLSDPYVKVTLL-----DGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQL-A--EVS 367 (421)
T ss_pred EEEEEEEecCCCccc---CCCCCCccEEEEEe-----cCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHh-h--eeE
Confidence 679999999999987 24678999999874 233446788999876 58999999999999987443 2 268
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|+|++.++.+++||.+.+-...
T Consensus 368 l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 368 LELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEcccccccceeeEEEecCCC
Confidence 99999999999999999988877664
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=110.78 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=91.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|.+++|+||+..+. .+..||||.+.+ .+ ...++|++++. ++||+|||.|.+++.+. .. ..
T Consensus 1042 l~I~~~~~~nl~~~d~---ng~sDpfv~~~l------n~---k~vyktkv~Kk-tlNPvwNEe~~i~v~~r---~~--D~ 1103 (1227)
T COG5038 1042 LTIMLRSGENLPSSDE---NGYSDPFVKLFL------NE---KSVYKTKVVKK-TLNPVWNEEFTIEVLNR---VK--DV 1103 (1227)
T ss_pred EEEEEeccCCCccccc---CCCCCceEEEEe------cc---eecccccchhc-cCCCCccccceEeeecc---cc--ce
Confidence 6899999999999982 457999998865 33 24789999975 89999999999999873 22 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
|.+.|+|++...+++.||.+.++|..|..+.+ .....+|-.+.-....|.+|....|-+.
T Consensus 1104 ~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~---~n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1104 LTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT---TNSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred EEEEEeecccCCCccccccccccHhhcCcCCc---cceeeeccCcceEecccEeecceecchh
Confidence 99999999998889999999999999964321 1123333222101356777777777664
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-09 Score=97.59 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=88.6
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
.|.|+.|.||+.... |..+|||+|.+.|+-. +| +++++.|+... |+.-|.+||+|+|.+..++ ..+.-.|
T Consensus 1128 tvkvvaandlkwqts----gmFrPFVEV~ivGP~l--sD-KKRK~~TKtKs-nnWaPKyNEtF~f~Lg~e~--~Pe~YEL 1197 (1283)
T KOG1011|consen 1128 TVKVVAANDLKWQTS----GMFRPFVEVHIVGPHL--SD-KKRKFSTKTKS-NNWAPKYNETFHFFLGNEG--GPEHYEL 1197 (1283)
T ss_pred EEEEEecccccchhc----cccccceEEEEecCcc--cc-hhhhccccccC-CCcCcccCceeEEEeccCC--CCceEEE
Confidence 689999999998862 5779999999988643 34 36889999775 6899999999999998843 2234589
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|+.....|+.+|.+.++|.++.... + .-.|++|-+
T Consensus 1198 ~~~VKDYCFAReDRvvGl~VlqL~~va~kG--S-~a~W~pLgr 1237 (1283)
T KOG1011|consen 1198 QFCVKDYCFAREDRVVGLAVLQLRSVADKG--S-CACWVPLGR 1237 (1283)
T ss_pred EEeehhheeecccceeeeeeeehhhHhhcC--c-eeEeeeccc
Confidence 999999998888999999999999997542 2 345899854
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8e-09 Score=95.74 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=97.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceE-EEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDK-FYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~-f~f~v~~~~l~~~~~~ 79 (192)
|.|+|..|+.|+-++. -+...|.||++.+ . ...+||-|-. ...||.||.. |+|.+++.++ ++ +
T Consensus 5 l~vki~a~r~lpvmdk--asd~tdafveik~------~----n~t~ktdvf~-kslnp~wnsdwfkfevddadl-qd--e 68 (1169)
T KOG1031|consen 5 LGVKIKAARHLPVMDK--ASDLTDAFVEIKF------A----NTTFKTDVFL-KSLNPQWNSDWFKFEVDDADL-QD--E 68 (1169)
T ss_pred ceeEEEeccCCccccc--ccccchheeEEEe------c----ccceehhhhh-hhcCCcccccceEEecChhhh-cc--C
Confidence 5689999999999983 2347899999975 2 2578999876 4899999975 9999998654 33 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCC-------CCCcceeEEEEEEeC-CCCcccEEEEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFP-------PGGSVRNLSYRLRAR-DGSRGHGVVNLAIKLE 141 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~-------~~~~~~~~~y~L~~~-~G~k~~G~l~l~v~f~ 141 (192)
.|++.+.|++..+.++-||++.|.+..|.-. ..+..-.-|+++.+. .| .+|+||+-|+..
T Consensus 69 plqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg--irgeinvivkvd 136 (1169)
T KOG1031|consen 69 PLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG--IRGEINVIVKVD 136 (1169)
T ss_pred CeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc--ccceeEEEEEEe
Confidence 8999999999999999999999999988421 223455679999974 34 789999998854
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-08 Score=93.29 Aligned_cols=99 Identities=16% Similarity=0.277 Sum_probs=79.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|-|.|+.|+++-+-|. .|-+||||.|++.+..... ....++|+|++ .+.||+++|+|.|.++.++. ..+++.
T Consensus 949 L~veVlhA~diipLD~---NGlSDPFVviEl~P~~~fp---~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c-~te~Am 1020 (1103)
T KOG1328|consen 949 LVVEVLHAKDIIPLDS---NGLSDPFVVIELIPKFRFP---AVPVQKTKVVS-RTLNPVFDETFEFSVPPEPC-STETAM 1020 (1103)
T ss_pred hhhhhhccccccccCC---CCCCCCeEEEEeccccccc---cchhhhhhhhh-ccccchhhhheeeecCcccc-ccccce
Confidence 4578999999988873 3689999999974422111 14567999987 58999999999999987443 223589
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|.+-++.+++-|++.+-|.++
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCC
Confidence 999999999998999999999999998
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=89.13 Aligned_cols=105 Identities=20% Similarity=0.368 Sum_probs=78.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceE-EEEE--cccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDK-FYVP--TDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~-f~f~--v~~~~l~~~~ 77 (192)
|+|+|||++=|.+.+ ..-||+|++||+. .|.....+||++..+|+.||+|||. |.|. +-. +
T Consensus 705 ~sV~VISgqFLSdrk-------vgtyVEVdmfgLP---~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp------e 768 (1189)
T KOG1265|consen 705 LSVTVISGQFLSDRK-------VGTYVEVDMFGLP---TDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP------E 768 (1189)
T ss_pred EEEEEEeeeeccccc-------cCceEEEEecCCC---chhhhhhhhhccccCCCCCcccccCCcccceeccc------c
Confidence 579999999999865 3479999999963 3333457899999999999999984 7774 222 1
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG 132 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G 132 (192)
.+.|+|.||++ +.++||.-.+|+..|... .+ -..|+.+.+ ++-+
T Consensus 769 LA~lRiavyeE----ggK~ig~RIlpvd~l~~G----Yr--hv~LRse~N-qpl~ 812 (1189)
T KOG1265|consen 769 LASLRIAVYEE----GGKFIGQRILPVDGLNAG----YR--HVCLRSESN-QPLT 812 (1189)
T ss_pred hhheeeeeecc----CCceeeeeccchhcccCc----ce--eEEecCCCC-Cccc
Confidence 37999999997 468999999999998642 12 244555554 4444
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-07 Score=89.95 Aligned_cols=131 Identities=22% Similarity=0.337 Sum_probs=87.0
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCC--------------------C-CCccEEEeEeecCCCCCCeec
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSG--------------------D-KHCHVYRTRVDDHGGVNPTWG 61 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~--------------------d-~~~~~~rT~v~~~~g~nP~WN 61 (192)
|.+..|+||-+++. .|.+|||+.+.+.....-.. - .-+-.+.|.|++ .+.||.|+
T Consensus 118 is~~~ak~l~akd~---ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~ 193 (1103)
T KOG1328|consen 118 ISLLEAKDLIAKDV---NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWS 193 (1103)
T ss_pred HHHHHhcCccccCC---CCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchh
Confidence 34567888887762 35789999766533110000 0 001123577665 58999999
Q ss_pred eEEEEEcccCccccCceeEEEEEEEEccC---------------------------------CCC---CeeeEEEEEeCc
Q 029535 62 DKFYVPTDCNAFFANRYACIYLQLYTKTL---------------------------------ISG---QTLLGWCQIPVN 105 (192)
Q Consensus 62 E~f~f~v~~~~l~~~~~~~L~veV~d~~~---------------------------------~~~---d~~IG~~~IpL~ 105 (192)
|+|.|.+++- + ...+++.|||.+. -+. |+++|-+.|||+
T Consensus 194 EkF~F~IeDv---~--tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 194 EKFQFTIEDV---Q--TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred hheeeehhcc---c--cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 9999999882 2 3589999998641 012 789999999999
Q ss_pred cccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEeecCCC
Q 029535 106 DIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLEPVVPD 146 (192)
Q Consensus 106 ~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~~~~~ 146 (192)
++-. .|-.+ ||.|.-++. .+.+|.++|.+|+......
T Consensus 269 EiP~--~Gld~--WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 269 EIPP--DGLDQ--WFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred cCCc--chHHH--HhccCcccccccccceEEEEEEEeeeccc
Confidence 9953 33323 666654332 3799999999999886533
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=79.85 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=82.4
Q ss_pred EEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCc---------cc-
Q 029535 5 ILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNA---------FF- 74 (192)
Q Consensus 5 VisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~---------l~- 74 (192)
+++++++-+- +++.+|||++|...+ +. +....+|++.+ .+.||.|||.|.|.+.... ..
T Consensus 137 ~L~~r~~~P~----~~~~~dp~~~v~~~g-----~~-~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 137 VLKTRQGLPI----INGQCDPFARVTLCG-----PS-KLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred hhhhcccCce----eCCCCCcceEEeecc-----cc-hhhccccceee-eccCcchhhheeeeeccccccccchhcCccc
Confidence 4455555443 235699999997643 22 12346899887 4899999999999887620 00
Q ss_pred cCceeEEEEEEEE-ccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe-CCCC-----cccEEEEEEEEEeec
Q 029535 75 ANRYACIYLQLYT-KTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA-RDGS-----RGHGVVNLAIKLEPV 143 (192)
Q Consensus 75 ~~~~~~L~veV~d-~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~-~~G~-----k~~G~l~l~v~f~~~ 143 (192)
+.+...|++++|+ .+.+.++.++|++++|+..+.... -...||-|+- ++|. ---|.+.+.+.+...
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s---~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKS---SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhcc---CccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 0112578999998 455556899999999999886321 1223888774 3331 235778888888775
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.9e-06 Score=81.26 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=78.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|-|..|++|.-... |...||||+.-+.+ ++. +..|.||+|.+ ++.||++||.+... ++- +.+++ .
T Consensus 1526 LtImV~H~K~L~~Lqd---g~~P~pyVK~YLlP----dp~-k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~-~~l~q--R 1593 (1639)
T KOG0905|consen 1526 LTIMVMHAKGLALLQD---GQDPDPYVKTYLLP----DPR-KTSKRKTKVVR-KTRNPTFNEMLVYDGFPK-EILQQ--R 1593 (1639)
T ss_pred EEEEhhhhcccccccC---CCCCCcceeEEecC----Cch-Hhhhhhhcccc-ccCCCchhhheeecCCch-hhhhh--h
Confidence 4677889999954321 34789999875532 221 25788999998 58999999999986 554 22333 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
.|++.|+..+.+..+.++|.+.|||.++--..| ...||+|-
T Consensus 1594 eLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE---~~~Wy~lg 1634 (1639)
T KOG0905|consen 1594 ELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE---SVGWYNLG 1634 (1639)
T ss_pred eeeeeeecccceeeeeeeeeeecchhhcchhhh---hcceeecc
Confidence 899999999988889999999999998832222 12499983
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.1e-06 Score=74.05 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=87.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE--cccCccccCce
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP--TDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~--v~~~~l~~~~~ 78 (192)
|+.||..|++|+.++ +.+..|||+...+...+ ....+++|++.. |+.||.|||+.... .++ +. ..
T Consensus 95 ~~~tl~~a~~lk~~~---~~~~~d~~~~~~llpga-----~kl~slr~~t~~-n~lN~~w~etev~~~i~~~-~~---~~ 161 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPMD---INGLADPYVKLHLLPGA-----GKLNSLRTKTTR-NTLNPEWNETEVYEGITDD-DT---HL 161 (362)
T ss_pred cceeechhcccchhh---hhhhcchHHhhhcccch-----hhhhhhhHHhhc-cCcCcceeccceecccccc-hh---hh
Confidence 578999999999998 45689999998875422 124568888875 68999999987764 333 21 23
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCC-cceeEEEEEE--e-CCC-CcccEEEEEEEEEee
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGG-SVRNLSYRLR--A-RDG-SRGHGVVNLAIKLEP 142 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~-~~~~~~y~L~--~-~~G-~k~~G~l~l~v~f~~ 142 (192)
..+++.|+|++.+..+.++|+.+++|..|...... .-.|+..++- + .+. -..+|.|.+++.|-.
T Consensus 162 K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 162 KVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred hhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 57899999999888889999999999988532110 1111122221 1 011 146788877777655
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.6e-05 Score=58.04 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=69.4
Q ss_pred CEEEEEEeeCCCCCC-------CCC-c--CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc-
Q 029535 1 MEITILSAQGLKNTS-------FTL-F--SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD- 69 (192)
Q Consensus 1 LeVtVisAk~L~~~~-------~~~-~--~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~- 69 (192)
|.|.|+.|-+|+..- .++ . .--.++||++++. .-++ ....+|+++. .++-|.+|..+.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lS----Fl~~--~e~r~TrtVA-rSFcPeF~Hh~Efpc~l 73 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLS----FLPE--KELRRTRTVA-RSFCPEFNHHVEFPCNL 73 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEec----cCCC--Cceeeccchh-hhcCCCccceEEEeccc
Confidence 678899998887521 100 0 0136899999852 1122 2567888886 5899999999999987
Q ss_pred -------cC----ccccCceeEEEEEEEEccCC----------CCCeeeEEEEEeCccccCC
Q 029535 70 -------CN----AFFANRYACIYLQLYTKTLI----------SGQTLLGWCQIPVNDIGFP 110 (192)
Q Consensus 70 -------~~----~l~~~~~~~L~veV~d~~~~----------~~d~~IG~~~IpL~~l~~~ 110 (192)
+. ++++ .+.+.|+||+...- .+|-++|.+.||+.+|+..
T Consensus 74 v~~~~~Ge~~sLAElLe--~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 74 VVQRNSGEAISLAELLE--SAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred EEEcCCCccccHHHHhh--cceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 10 1122 35899999986421 2567899999999999753
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00044 Score=55.02 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=59.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|++|.++.-.+ ..|-||++++|. ++..-+....|+... ..++.|||.++|++.=..+- ..+.
T Consensus 10 ~~v~i~~~~~~~~~~------~~~l~V~v~l~~----g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP--r~Ar 75 (158)
T cd08398 10 LRIKILCATYVNVND------IDKIYVRTGIYH----GGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP--RSAR 75 (158)
T ss_pred eEEEEEeeccCCCCC------cCeEEEEEEEEE----CCEEccCeeEecccC--CCCCccceeEEcccchhcCC--hhhe
Confidence 579999999987543 468899999874 221001222454343 26899999999987653332 2379
Q ss_pred EEEEEEEccCCC----CCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLIS----GQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~----~d~~IG~~~IpL~~ 106 (192)
|.|+|++...-. ...+||++.++|-+
T Consensus 76 L~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 76 LCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 999999864311 12457777766655
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=69.80 Aligned_cols=100 Identities=17% Similarity=0.307 Sum_probs=72.7
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
.+|+++|+ ++ ..|||..+-.+ + .|.+||.+.+ ++.||+||+...|.+...+ ..+.
T Consensus 57 ~~~~~~~~----~~------~~~~~~~~~~~-----g----~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~-----~~~~ 111 (644)
T PLN02964 57 LLTLVGAE----MK------FKDKWLACVSF-----G----EQTFRTETSD-STDKPVWNSEKKLLLEKNG-----PHLA 111 (644)
T ss_pred EEEeehhh----hc------cCCcEEEEEEe-----c----ceeeeecccc-ccCCcccchhhceEeccCC-----cceE
Confidence 46777776 54 24888765332 2 4899999876 5999999999999887633 1467
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
+|.|+|.+.++.++++|.+.++|.++..+...++. ..|.+.+++|
T Consensus 112 ~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elk-eaF~lfD~dg 156 (644)
T PLN02964 112 RISVFETNRLSKNTLVGYCELDLFDFVTQEPESAC-ESFDLLDPSS 156 (644)
T ss_pred EEEEEecCCCCHHHhhhheeecHhhccHHHHHHHH-HHHHHHCCCC
Confidence 99999999999999999999999998643221211 1366666654
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00053 Score=55.26 Aligned_cols=77 Identities=17% Similarity=0.356 Sum_probs=52.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|++|.+|.-.+ ...+-||++++|- ++..-+....|+... ...++.|||.+.|++.-..|. +.+.
T Consensus 10 f~i~i~~~~~~~~~~-----~~~~l~V~~~lyh----G~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP--r~Ar 77 (173)
T cd08693 10 FSITLHKISNLNAAE-----RTMKVGVQAGLFH----GGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP--RMAR 77 (173)
T ss_pred EEEEEEEeccCccCC-----CCceEEEEEEEEE----CCEEccCceEccccC-CCCccccceeEEcccchhcCC--hhHe
Confidence 579999999998622 2567799988874 321112334566554 346799999999987553332 2379
Q ss_pred EEEEEEEcc
Q 029535 81 IYLQLYTKT 89 (192)
Q Consensus 81 L~veV~d~~ 89 (192)
|.|.||+..
T Consensus 78 Lciti~~~~ 86 (173)
T cd08693 78 LCFAIYEVS 86 (173)
T ss_pred EEEEEEEec
Confidence 999999864
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=6.5e-05 Score=73.47 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=70.0
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
+|.|+.|.+|...|. .|..||||.+.+ ++ +...-++..+. ++.||++++.|.+...- ++ ...|
T Consensus 616 rVyvv~A~~L~p~D~---ng~adpYv~l~l------Gk--~~~~d~~~yip-~tlnPVfgkmfel~~~l-p~----ek~l 678 (1105)
T KOG1326|consen 616 RVYVVEAFSLQPSDG---NGDADPYVKLLL------GK--KRTLDRAHYIP-NTLNPVFGKMFELECLL-PF----EKDL 678 (1105)
T ss_pred EEEEEEeeeccccCC---CCCcCceeeeee------cc--chhhhhhhcCc-CCCCcHHHHHHHhhccc-ch----hhcc
Confidence 689999999999983 368999999875 32 12234556565 58999999999887655 32 1479
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
.++|||++.+++|+.||+..|.|.+=
T Consensus 679 ~v~vyd~D~~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 679 IVEVYDHDLEAQDEKIGETTIDLENR 704 (1105)
T ss_pred eeEEEEeecccccchhhceehhhhhc
Confidence 99999999998999999999998853
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=51.90 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=62.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|.++.++...+ ....+-||++++|- ++..-.....|.... ...++.|||.+.|++.-..+ .. .+.
T Consensus 10 ~~i~i~~~~~~~~~~----~~~~~l~V~~~l~~----g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~L-P~-~ar 78 (156)
T cd08380 10 LRIKIHGITNINLLD----SEDLKLYVRVQLYH----GGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDL-PR-EAR 78 (156)
T ss_pred eEEEEEeeccccccC----CCceeEEEEEEEEE----CCEEccCceeccCCc-CCCCCcccceeEccchhhcC-Ch-hhe
Confidence 467788887776522 12568889998875 221112233454443 24689999999998654333 22 369
Q ss_pred EEEEEEEccCCC--CCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLIS--GQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~--~d~~IG~~~IpL~~l 107 (192)
|.|.||+..... .+.+||++.++|=+-
T Consensus 79 L~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 79 LCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 999999976432 357899988887664
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00033 Score=61.53 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=69.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+++.+..|..+|. .+-+||||.+.+ . .+-+ ...+.||.+.+ ++.||.+|+.|.|.+.+..|. .-.
T Consensus 235 l~vt~iRc~~l~ssDs---ng~sDpyvS~~l--~--pdv~-~~fkkKt~~~K-~t~~p~fd~~~~~~i~pgdLa---~~k 302 (362)
T KOG1013|consen 235 LIVTIIRCSHLASSDS---NGYSDPYVSQRL--S--PDVG-KKFKKKTQQKK-KTLNPEFDEEFFYDIGPGDLA---YKK 302 (362)
T ss_pred eEEEEEEeeeeecccc---CCCCCccceeec--C--CCcc-hhhcccCcchh-ccCCccccccccccCCccchh---cce
Confidence 5799999999998883 357999998754 2 1211 35788999886 589999999999999885542 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVN 105 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~ 105 (192)
+.|.|+|++...+.+++|-...-+.
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred EEEeecccCCCcCccCCCccccccc
Confidence 9999999988667778876554433
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00026 Score=63.89 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=88.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccC-----cccc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCN-----AFFA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~-----~l~~ 75 (192)
|+++|++++++.-... ....|-||.++.-..+ | ..++.+|.+++ ++..|.++|.|.+.+..- ++..
T Consensus 369 lel~ivrg~~~pvp~g---p~hld~fvr~efpl~n----D-~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR 439 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGG---PMHLDQFVRLEFPLEN----D-SRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQR 439 (523)
T ss_pred hHHHHhhcccCCCCCC---chhHHhhhcccccccc----c-ccccCccceee-CCCCCCcccceeeeccCCCcccHHHHH
Confidence 4567777777765541 1246888888753322 3 35888999997 589999999999987541 1100
Q ss_pred --CceeEEEEEEEEccCC-CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 76 --NRYACIYLQLYTKTLI-SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 76 --~~~~~L~veV~d~~~~-~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
.+ ..+.|++|++..| .+|+++|++.|.|.-|...-+ -+..|+|.+... ...|.|.+.|++-.+
T Consensus 440 ~fkr-~g~kfeifhkggf~rSdkl~gt~nikle~Len~ce---i~e~~~l~DGRK-~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 440 RFKR-LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE---ICEYLPLKDGRK-AVGGKLEVKVRIRQP 505 (523)
T ss_pred HHHh-cCeeEEEeeccccccccceeceeeeeehhhhcccc---hhhceecccccc-ccCCeeEEEEEEecc
Confidence 11 3689999998664 679999999999998864311 234788875322 467899999887653
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00083 Score=48.87 Aligned_cols=93 Identities=12% Similarity=0.211 Sum_probs=65.6
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
=|||+.++||..... -+....-|+. |+..+. +...+||.+. .+..||.++|||.|.+.-..+ +...|
T Consensus 2 witv~~c~d~s~~~~--~~e~~~i~ik----g~~tl~---kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL---~~V~L 68 (103)
T cd08684 2 WITVLKCKDLSWPSS--CGENPTIYIK----GILTLP---KPVHFKSSAK-EGSNDIEFMETFVFAIKLQNL---QTVRL 68 (103)
T ss_pred EEEEEEecccccccc--cCcCCeeEEE----EEEecC---CCccccchhh-cCCCChhHHHHHHHHHHHhhc---cceEE
Confidence 379999999987762 1223344443 222232 2467889866 478999999999998865222 33688
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|.|+.. ..+.+.||++.+.|.++..
T Consensus 69 ~fsv~~~--~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 69 VFKIQTQ--TPRKRTIGECSLSLRTLST 94 (103)
T ss_pred EEEeecc--CCccceeeEEEeecccCCH
Confidence 9999883 3477899999999999864
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0034 Score=49.92 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~ 101 (192)
..|-||++++|. ++..-+....|+... -+..+.|||-+.|++.=..+-. .+.|.|+||+....++..+||.+.
T Consensus 29 ~~~l~V~~~l~~----~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~--~a~L~iti~~~~~~~~~~~vg~~~ 101 (159)
T cd08397 29 NSDLFVTCQVFD----DGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPR--NSQLAITIWDVSGTGKAVPFGGTT 101 (159)
T ss_pred CCCEEEEEEEEE----CCEeccCcEEccccC-CCCCcccceeEEcccchhcCCh--hheEEEEEEEecCCCCceEEEEEE
Confidence 578899999874 221112233555443 3567899999999876544322 379999999976534567889888
Q ss_pred EeCccc
Q 029535 102 IPVNDI 107 (192)
Q Consensus 102 IpL~~l 107 (192)
++|=+-
T Consensus 102 ~~lFd~ 107 (159)
T cd08397 102 LSLFNK 107 (159)
T ss_pred EeeECC
Confidence 887653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0041 Score=49.78 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=59.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeec---CCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDD---HGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~---~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
+.|+|.++.++..... ....|=||++++|- ++..-+....|+... .-...+.|||.+.|++.-..+ . +
T Consensus 10 ~~i~v~~~h~~~~~~~---~~~~~~~v~~~l~~----g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-P-r 80 (171)
T cd04012 10 LSVTVSSLHRIPPTWV---QSFEDFYLSCSLYH----GGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-P-R 80 (171)
T ss_pred EEEEEEEeecCChHHh---hccccEEEEEEEEE----CCEECcCceeccccccccCccccccccceEECccchhcC-C-h
Confidence 4688999999987531 12578899998874 221112233454321 112367899999998755333 2 2
Q ss_pred eeEEEEEEEEccCCC---------CCeeeEEEEEeCccc
Q 029535 78 YACIYLQLYTKTLIS---------GQTLLGWCQIPVNDI 107 (192)
Q Consensus 78 ~~~L~veV~d~~~~~---------~d~~IG~~~IpL~~l 107 (192)
.+.|.|.+|+..... .+.+||++.++|=|.
T Consensus 81 earL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 81 ESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred hHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 379999999865432 235667766665543
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.021 Score=46.34 Aligned_cols=127 Identities=12% Similarity=-0.007 Sum_probs=70.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
++|+|+++..+ +.+. .....-||++++|. ++. .....+|.... -+.++.|||-+.|++.=..+- ..+.
T Consensus 12 friki~~~~~~-~~~~---~~~~~l~V~~~Ly~----g~~-~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP--~~ar 79 (178)
T cd08399 12 FRVKILGIDIP-VLPR---NTDLTVFVEANIQH----GQQ-VLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLP--KGAL 79 (178)
T ss_pred EEEEEEeeccc-CcCC---CCceEEEEEEEEEE----CCe-ecccceeeccC-CCCCccccccEECccccccCC--hhhE
Confidence 46888888733 3321 12456788888875 221 11223555554 357899999999987654432 2379
Q ss_pred EEEEEEEccCCCC-CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISG-QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~-d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+||+...-.. .+.+|.. +.+.-. ..+..+.+....|++.+|.=.+|...|.+|-.+
T Consensus 80 Lc~ti~~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 80 LNLQIYCGKAPALSSKKSAES--PSSESK-GKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEEecCcccccccccc--cccccc-cccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 9999998632111 1222221 111111 112245566677776665325788888888655
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0082 Score=46.38 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCcccCCCCCc-cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCC----eeeE
Q 029535 24 RPFVTITTYPPATTSGDKHC-HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQ----TLLG 98 (192)
Q Consensus 24 dPYV~v~~y~~~~i~~d~~~-~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d----~~IG 98 (192)
+-||++++|- ++..-+ ....|+...-...++.|||.+.|++.=..+- . .+.|.|.|++......+ .+||
T Consensus 3 ~~~V~~~ly~----g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r-~a~L~~~l~~~~~~~~~~~~~~~lg 76 (142)
T PF00792_consen 3 KLYVECQLYH----GGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLP-R-EARLCFTLYGVDSKKKSKKKKVPLG 76 (142)
T ss_dssp EEEEEEEEEE----TTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--T-TEEEEEEEEEEECSTTT--EEEEEE
T ss_pred eEEEEEEEEE----CCEEeecCeeeccccccccccceEeeEEEeecChHHCC-h-hHeEEEEEEEecCCCccccceeEEE
Confidence 3477788773 221112 1236665543226999999999986543332 2 37999999997664444 6899
Q ss_pred EEEEeCccc
Q 029535 99 WCQIPVNDI 107 (192)
Q Consensus 99 ~~~IpL~~l 107 (192)
++.++|=+.
T Consensus 77 w~n~~lFd~ 85 (142)
T PF00792_consen 77 WVNLPLFDY 85 (142)
T ss_dssp EEEEESB-T
T ss_pred EEEEEeECC
Confidence 999887765
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.14 Score=39.04 Aligned_cols=128 Identities=15% Similarity=0.233 Sum_probs=78.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc----cCcc-cc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD----CNAF-FA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~----~~~l-~~ 75 (192)
+.|+|...++++... ..-| |. |-.++.+.....|.........-.|||.|.+.+. .... .+
T Consensus 9 ~~l~i~~l~~~p~~~-------~~v~--v~-----wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~ 74 (143)
T PF10358_consen 9 FDLTIHELENLPSSN-------GKVF--VK-----WKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQ 74 (143)
T ss_pred EEEEEEEeECcCCCC-------CEEE--EE-----EEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEe
Confidence 367888888888633 1122 22 3344432114566665555667899999988542 2111 12
Q ss_pred CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCCC
Q 029535 76 NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPDT 147 (192)
Q Consensus 76 ~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~~ 147 (192)
. ..+.|.|+....-+....+|++.|.|++++...+ ......|+|... .+....|++++.+.....++
T Consensus 75 ~--K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 75 P--KELKFSVFEVDGSGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC--KKSNATLSISISLSELREDP 141 (143)
T ss_pred e--EEEEEEEEEecCCCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC--CCCCcEEEEEEEEEECccCC
Confidence 2 4788888886431223699999999999986432 234456777543 24577899999988865443
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.002 Score=57.53 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=76.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|.||.|++|-..... ...++|||+|.+.. ++.-..+.+|+...+ +..|.+.+.+.|.-+.. ...
T Consensus 271 l~vEii~ar~l~~k~~~--k~~~apyVkVYlL~-----~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~------~k~ 336 (405)
T KOG2060|consen 271 LEVEIIRARGLVVKPGS--KSLPAPYVKVYLLE-----NGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPP------GKY 336 (405)
T ss_pred eeEEEEecccccccCCc--ccccCceeEEEEcC-----CCceecccccccccc-cCchhhhhhhhhccCCC------ccE
Confidence 68999999999765421 12679999987643 322235678888763 56666666677765541 258
Q ss_pred EEEEEE-EccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLY-TKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~-d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.+.|+ |+.+...+.++|.+.|-|.+|.-.. .+-.-||+|+..+.
T Consensus 337 Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgsss 382 (405)
T KOG2060|consen 337 LQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGSSS 382 (405)
T ss_pred EEEEEeccccccchHHHhhHHHHHhhhhcccc--ccceeeeeccCCcc
Confidence 999999 4666667889999999999994211 23445999986544
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00083 Score=65.99 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=77.5
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-c--ccC--ccccCc
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-T--DCN--AFFANR 77 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v--~~~--~l~~~~ 77 (192)
+.|..|+.|...+. .+.+|||+.+... + |.+.|-+.. ++.||.||+++.|. + -.. ..+++.
T Consensus 210 ~yiyQar~L~a~dk---~~~sdp~a~v~f~-----~-----qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~p 275 (1105)
T KOG1326|consen 210 SYIYQARALGAPDK---DDESDPDAAVEFC-----G-----QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNP 275 (1105)
T ss_pred HHHHHHHhhcCCCc---ccCCCchhhhhcc-----c-----ccceeEeec-CcCCCCccceeeccceeecCccchhhcCC
Confidence 34556788877762 3478999988632 1 567788775 69999999999984 2 110 111221
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAI 138 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v 138 (192)
-.+.|+|||.++.+.++++|+......=..+.+ +..|+++.+ |+...|.+.++.
T Consensus 276 -pi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~p----~lkw~p~~r--g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 276 -PIRVFEVYDLDRSGINEFKGRKKQRPYVMVQCP----ALKWVPTMR--GAFLDGDVLIAA 329 (1105)
T ss_pred -CeEEEEeehhhhhchHHhhcccccceEEEecCC----ccceEEeec--ccccccchhHHH
Confidence 478999999998888999998766655443322 345888874 336777776665
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0083 Score=55.92 Aligned_cols=93 Identities=19% Similarity=0.360 Sum_probs=63.9
Q ss_pred EEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEE
Q 029535 6 LSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQL 85 (192)
Q Consensus 6 isAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV 85 (192)
+.|++|.+++ +|+ +.|||..+. -.. +.+......+|.+.+ ++.||.|- .|.+.+.. -...+....+.+++
T Consensus 143 ~~~~~ld~kd--~f~-ksd~~l~~~--~~~--~d~s~~~~~~tEv~~-n~l~p~w~-~~~i~~~~-l~~~~~~~~~~i~~ 212 (529)
T KOG1327|consen 143 FRAKNLDPKD--FFS-KSDPYLEFY--KRV--DDGSTQMLYRTEVVK-NTLNPQWA-PFSISLQS-LCSKDGNRPIQIEC 212 (529)
T ss_pred eeeeecCccc--ccc-cCCcceEEE--Eec--CCCceeeccccceec-cCCCCccc-ccccchhh-hcccCCCCceEEEE
Confidence 3467777776 664 899998764 221 222235677999887 58999998 45555433 11111225789999
Q ss_pred EEccCCCCCeeeEEEEEeCcccc
Q 029535 86 YTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 86 ~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
||++.-+++++||++..++.++.
T Consensus 213 ~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 213 YDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred eccCCCCCcCceeEecccHHHhc
Confidence 99988767799999999998884
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.059 Score=40.21 Aligned_cols=94 Identities=20% Similarity=0.152 Sum_probs=52.3
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCcccc--CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEE
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFA--NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYR 121 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~--~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~ 121 (192)
..+.|.+.. |.||..|-+-+|.|....+.- .+...+.+|++..-. ..-+.||.+.|+|..++...+.. ...+..
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~-i~~~~~ 86 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGER-IHGSAT 86 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S---EEEEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCce-EEEEEE
Confidence 467899886 799999999888776543321 123589999998653 24578999999999997543312 334667
Q ss_pred EEeCCCCcccEEEEEEEEEee
Q 029535 122 LRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 122 L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.+.+| ..-|.|++.+++.-
T Consensus 87 l~g~~~-~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 87 LVGVSG-EDFGTLEYWIRLRV 106 (107)
T ss_dssp E-BSSS--TSEEEEEEEEEEE
T ss_pred EeccCC-CeEEEEEEEEEecC
Confidence 777777 58999999998753
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.034 Score=45.56 Aligned_cols=60 Identities=22% Similarity=0.501 Sum_probs=43.8
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC-CC-CeeeEEEEEeCcc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI-SG-QTLLGWCQIPVND 106 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~-~~-d~~IG~~~IpL~~ 106 (192)
...++|.|... ..+|.|||++++.++.+ ...+ ..|.|++++...- .+ ..++|.+.+||-+
T Consensus 52 ~se~~S~V~yH-~~~P~W~EtiKi~lP~~-~~~~--~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYH-NNSPRWNETIKLPIPID-KFRG--SHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEc-CCCCCCceeEEEecChh-hCCC--eeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 46788888753 68999999999999883 3333 6899998874321 12 2689999999853
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.12 Score=41.18 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=73.7
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCcccc--------CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFA--------NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGS 114 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~--------~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~ 114 (192)
.|+++|+-+. ...+|.++|.|-|.++...... .-...|++.|...+..+...++|+-.+....++..+.+
T Consensus 44 ~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~- 121 (156)
T PF15627_consen 44 GQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG- 121 (156)
T ss_pred CceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCC-
Confidence 4899999886 6899999999999987743111 01136788888777665668999999999988765432
Q ss_pred ceeEEEEEEeCCCC--cccEEEEEEEEEeecC
Q 029535 115 VRNLSYRLRARDGS--RGHGVVNLAIKLEPVV 144 (192)
Q Consensus 115 ~~~~~y~L~~~~G~--k~~G~l~l~v~f~~~~ 144 (192)
...+..+|...... -+.|.|++.+.+.|..
T Consensus 122 ~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 122 STSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred ccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 23567788765432 3899999999998854
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.057 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.339 Sum_probs=35.4
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCC-C--CeeeEEEEEeCcc
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLIS-G--QTLLGWCQIPVND 106 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~-~--d~~IG~~~IpL~~ 106 (192)
..+.|.|.- ...+|.|+|+|.+.++. .+..+ ..|.|++++...-. + +.++|.+.+||.+
T Consensus 59 ~~~~S~v~y-h~k~P~f~deiKi~LP~-~l~~~--~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYY-HNKNPQFNDEIKIQLPP-DLFPK--HHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----T-T-SS-EEEEEEEEEE-C-CCCTT--EEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEe-cCCCCCccEEEEEEcCc-hhccc--EEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456777664 46899999999999987 43333 68999999853311 2 2799999999987
|
|
| >cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.089 Score=42.24 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.5
Q ss_pred EEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC-----CCCeeeEEEEEeCcc
Q 029535 45 VYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI-----SGQTLLGWCQIPVND 106 (192)
Q Consensus 45 ~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~-----~~d~~IG~~~IpL~~ 106 (192)
..-|.+...+ .+|.|+|+|.+.++. .+..+ ..|.|++++-..- ....++|.+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~-~l~~~--~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPA-DLTPQ--HHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCC-ccCCC--eEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444444 899999999999977 33233 6899999985421 235789999999886
|
Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.11 Score=42.90 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=43.0
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC-CC---CeeeEEEEEeCc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI-SG---QTLLGWCQIPVN 105 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~-~~---d~~IG~~~IpL~ 105 (192)
...++|.|.- ...+|.|||++++.++.+. ..+ ..|.|++++...- .+ ..++|.+.+||-
T Consensus 52 ~se~~S~V~Y-h~~~P~W~EtIKl~lP~~~-~~~--~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYY-QVDKPKWFETFKVAIPIED-FKS--SHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEe-ecCCCCCceeEEEecChhh-CCC--eEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4677888854 2579999999999998733 333 6899999874321 12 368999999986
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.39 Score=42.78 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=85.0
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccC--cee
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFAN--RYA 79 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~--~~~ 79 (192)
-|.|+.|++.+... +..-.+... .++ ....|-... +.-.|.||..+.+.++-..+.+. +..
T Consensus 3 vl~i~egr~F~~~~------~~~~vv~a~------~ng----~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~t 65 (340)
T PF12416_consen 3 VLSILEGRNFPQRP------RHPIVVEAK------FNG----ESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRT 65 (340)
T ss_pred EEEEecccCCCCCC------CccEEEEEE------eCC----ceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCC
Confidence 47888888887653 122222222 343 456777554 57899999999999986443321 125
Q ss_pred EEEEEEEEcc-CCCCCeeeEEEEEeCccc---cCCCCCcceeEEEEEEeCCC--CcccEEEEEEEEEeecCC
Q 029535 80 CIYLQLYTKT-LISGQTLLGWCQIPVNDI---GFPPGGSVRNLSYRLRARDG--SRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 80 ~L~veV~d~~-~~~~d~~IG~~~IpL~~l---~~~~~~~~~~~~y~L~~~~G--~k~~G~l~l~v~f~~~~~ 145 (192)
.|.+++|.-+ .-+..+.||.+.++|... ... .......||+|..-++ .+.+-+|.+.+...+...
T Consensus 66 PiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 66 PIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ceEEEEEEecCCCCcceeccEEEEEcccccccccc-ccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 7899999876 334568999999999988 221 1246778999997532 235668888888888654
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.75 Score=33.42 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEcc
Q 029535 23 IRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKT 89 (192)
Q Consensus 23 ~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~ 89 (192)
.+-||++++|- ++..-.....|+... ....+.|||-+.|++.=..+. ..+.|.|.+|+..
T Consensus 32 ~~l~v~~~l~~----g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LP--r~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYH----GGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLP--REARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEE----CCEEccCcEEecccC-CCCCcccceeEEccCchhcCC--hhhEEEEEEEEee
Confidence 38899998874 221111233455443 345699999999986553332 2379999999853
|
Outlier of C2 family. |
| >cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.6 Score=37.95 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=42.2
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC------CCCeeeEEEEEeCcc
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI------SGQTLLGWCQIPVND 106 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~------~~d~~IG~~~IpL~~ 106 (192)
....|.|.-. +.+|.|+|.|.+.++. .+.++ ..|.|+.++-..- ....++|-+.+||-.
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~-~l~~~--hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPA-DLTDN--HHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCC-CCCCC--eEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4667887653 6899999999999987 43333 5899999983221 113678888888764
|
Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.35 Score=47.74 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=77.4
Q ss_pred CCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEE
Q 029535 23 IRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQI 102 (192)
Q Consensus 23 ~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~I 102 (192)
+++|+++.+- +..-.+|+...+.-.+|.|.+.|.+...+. ...+.+.+.+.+..+-.+.+|.+++
T Consensus 138 ~e~Ylt~~l~---------~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~------~g~v~~~~~~~~~~G~s~~w~~v~~ 202 (887)
T KOG1329|consen 138 LENYLTVVLH---------KARYRRTHVIYEFLENSRWSFSFDIGFAHK------AGYVIFRVKGARVPGWSKRWGRVKI 202 (887)
T ss_pred ccchheeeec---------hhhhhchhhhhcccccchhhhhcccccccc------ccEEEEeecCCccccceeEEEEecc
Confidence 5889988652 134556777665448999999999888772 2589999999887754899999999
Q ss_pred eCccccCCCCCcceeEEEEEEeCCCCcccE--EEEEEEEEeecCCCC
Q 029535 103 PVNDIGFPPGGSVRNLSYRLRARDGSRGHG--VVNLAIKLEPVVPDT 147 (192)
Q Consensus 103 pL~~l~~~~~~~~~~~~y~L~~~~G~k~~G--~l~l~v~f~~~~~~~ 147 (192)
|+-.+... .....++.+.+.++...+| .+.+.+.|.+....+
T Consensus 203 s~~~~~~~---~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~~~ 246 (887)
T KOG1329|consen 203 SFLQYCSG---HRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEKDR 246 (887)
T ss_pred chhhhhcc---ccccceeeeeccCCccccCCcccceEEeeEeechhh
Confidence 99999753 2233488888877733222 567778888876544
|
|
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.2 Score=36.45 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=42.2
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC---------CCCeeeEEEEEeCcc
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI---------SGQTLLGWCQIPVND 106 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~---------~~d~~IG~~~IpL~~ 106 (192)
....|.|.-. ..+|.|+|.+.+.++. .+-++ ..|.|+.++-..- ....++|-+.+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~-~l~~~--hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPT-QLHEK--HHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCC-cCCCC--eeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4567787764 5899999999999987 43333 5899999985311 113578888888765
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.2 Score=32.67 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=47.3
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
....|.-..- .+..|+++|.|.++-+ ..|.|.||-.+- ..+=|...+.|.+... ....+|
T Consensus 21 ~VgqT~Wk~~--s~q~WDQ~Fti~LdRs-------RELEI~VywrD~---RslCav~~lrLEd~~~-------~~~~~l- 80 (98)
T cd08687 21 VVGQTQWKPK--SNQAWDQSFTLELERS-------RELEIAVYWRDW---RSLCAVKFLKLEDERH-------EVQLDM- 80 (98)
T ss_pred EEeecccccc--ccccccceeEEEeecc-------cEEEEEEEEecc---hhhhhheeeEhhhhcc-------cceecc-
Confidence 5566665543 5889999999999872 479999996543 2355667777777431 123333
Q ss_pred eCCCCcccEEEEEEEEE
Q 029535 124 ARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 124 ~~~G~k~~G~l~l~v~f 140 (192)
.++|.+-..+.|
T Consensus 81 -----epqg~l~~ev~f 92 (98)
T cd08687 81 -----EPQLCLVAELTF 92 (98)
T ss_pred -----ccccEEEEEEEe
Confidence 466666666666
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.82 Score=40.59 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=69.6
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
=+++..+++|+-... --+-..+=|+++.. + ...+.||.+-. ++.--.|.|+|+..+-.. ..+
T Consensus 54 ~~H~~~GRGLr~~p~-~kglt~~~ycVle~------d---rqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~-------~vl 115 (442)
T KOG1452|consen 54 YFHAYNGRGLRMTPQ-QKGLTVCFYCVLEP------D---RQHPARTRVRS-SGPGFAWAEDFKHDVVNI-------EVL 115 (442)
T ss_pred EEEEecccccccChh-ccCceeeeeeeeee------c---ccCcccccccc-CCCCccchhhceeecccc-------eee
Confidence 367888899986542 11224566666543 3 24678888664 578889999999988651 578
Q ss_pred EEEEEEccCCCCCee--eEEEEEeCccccC-CCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 82 YLQLYTKTLISGQTL--LGWCQIPVNDIGF-PPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 82 ~veV~d~~~~~~d~~--IG~~~IpL~~l~~-~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
.+-||.+..-.+.++ .| -+.+..+.. .++ +.+.+.| .++|.+-+.+.+.+.
T Consensus 116 ~~lvySW~pq~RHKLC~~g--~l~~~~v~rqspd---~~~Al~l------ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 116 HYLVYSWPPQRRHKLCHLG--LLEAFVVDRQSPD---RVVALYL------EPRGQPPLRLPLADP 169 (442)
T ss_pred eEEEeecCchhhccccccc--hhhhhhhhhcCCc---ceeeeec------ccCCCCceecccCCh
Confidence 999999876444443 44 233333322 222 2233333 467777777777764
|
|
| >PF14924 DUF4497: Protein of unknown function (DUF4497) | Back alignment and domain information |
|---|
Probab=87.96 E-value=2.1 Score=31.82 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=42.5
Q ss_pred EEEEEEEEccC---CCCCeeeEEEEEeCccccC-----------CCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 80 CIYLQLYTKTL---ISGQTLLGWCQIPVNDIGF-----------PPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 80 ~L~veV~d~~~---~~~d~~IG~~~IpL~~l~~-----------~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
.|.+.+++-.. .....+||.+.|++.+... .+......-.|+|+++.| ..-|.|.+.+++..
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~-~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG-NPVGEISLYIRLSC 105 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC-ceeeeEEEEEEEec
Confidence 56666665322 2356789999999998741 111122334699999887 68999999999764
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=83.93 E-value=8.9 Score=30.47 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecC-CCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDH-GGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWC 100 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~-~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~ 100 (192)
+..-|+++-+ ++ +...+|+...- ..+.=..||.|.+.+...+ ..|.++||.... ..+..|+.+
T Consensus 36 ~~~~~ikl~~------N~---k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P------esi~l~i~E~~~-~~~~~la~v 99 (168)
T PF15625_consen 36 KTRYYIKLFF------ND---KEVSRTRSRPLWSDFRVHFNEIFNVQITRWP------ESIKLEIYEKSG-LSDRLLAEV 99 (168)
T ss_pred heeEEEEEEE------CC---EEEEeeeeEecCCCeEEeccCEEEEEEecCC------CEEEEEEEEccC-ccceEEEEE
Confidence 3455666543 32 35667776543 4567788999999987633 489999999876 588999999
Q ss_pred EEeCcccc
Q 029535 101 QIPVNDIG 108 (192)
Q Consensus 101 ~IpL~~l~ 108 (192)
.||+....
T Consensus 100 ~vpvP~~~ 107 (168)
T PF15625_consen 100 FVPVPGST 107 (168)
T ss_pred EeeCCCCc
Confidence 99998773
|
|
| >PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A | Back alignment and domain information |
|---|
Probab=82.80 E-value=6 Score=31.21 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=51.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeec-CCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDD-HGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~-~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|.|-+.. |++.. ...|||++|++.- ..|..-...+.|.+.. ..+..=.||.+.++...-+.+.. .+
T Consensus 15 l~v~Iekig-lkda~-----~~~~P~~tVSV~D---~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~--Ga 83 (147)
T PF14186_consen 15 LSVFIEKIG-LKDAS-----QYIDPYFTVSVKD---GNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK--GA 83 (147)
T ss_dssp EEEEEEEEE--TTGG-----G-EEEEEEEEEE----TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T--T-
T ss_pred EEEEEEEEE-ECChH-----HccCCeEEEEEEC---CCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCC--ce
Confidence 345555555 77764 3579999998631 1121113456677652 22345677877776443323322 36
Q ss_pred EEEEEEEEccCCC-CCeeeEEEEEeCcccc
Q 029535 80 CIYLQLYTKTLIS-GQTLLGWCQIPVNDIG 108 (192)
Q Consensus 80 ~L~veV~d~~~~~-~d~~IG~~~IpL~~l~ 108 (192)
.+.||++++..-. +-...+++-+++.++.
T Consensus 84 ai~fE~kH~K~kk~k~S~kcw~fme~dei~ 113 (147)
T PF14186_consen 84 AIFFEFKHYKPKKKKTSTKCWAFMELDEIK 113 (147)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEEEEGGG--
T ss_pred EEEEEEEeeeccceeeeeeEEEEEEhhhcc
Confidence 8999999986632 3356899999998885
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-11
Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+E+ ++SA+GL++ F P+V +T ++ V + G P W
Sbjct: 12 LEVVLVSAKGLEDADFLNNM---DPYVQLTC------RTQDQ----KSNVAEGMGTTPEW 58
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+ F + + +++ K + + +G IP+ + GS+ +Y
Sbjct: 59 NETFIFT------VSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPV--FVEGSIPPTAY 110
Query: 121 RLRARDGSRGHGVVNLAIKLEPVVPD 146
+ + +G + +A+ +P P
Sbjct: 111 NVVKDEEYKGE--IWVALSFKPSGPS 134
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-08
Identities = 19/149 (12%), Positives = 52/149 (34%), Gaps = 22/149 (14%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
++IT++SA+ +N S P+V +T + +T + +P W
Sbjct: 38 LQITVISAKLKENKKNWFGPS---PYVEVTV-------DGQ---SKKTEK-CNNTNSPKW 83
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+ ++ ++++ + LLG + + + + +
Sbjct: 84 KQPLT-------VIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 136
Query: 121 RLRARDGSRGHGVV-NLAIKLEPVVPDTS 148
L+ + +L+I L+ + ++
Sbjct: 137 TLQLGGDKEPTETIGDLSICLDGLQLESE 165
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-06
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 31/149 (20%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIR-------PFVTITTYPPATTSGDKHCHVYRTRVDDH 53
+ + I A GL+ T ++L S + P++T++ V +T
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV---------DQVRVGQTST-KQ 80
Query: 54 GGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGG 113
PT+ ++F + L ++ +T + + C + ++ G
Sbjct: 81 KTNKPTYNEEFCAN-------VTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGA 133
Query: 114 S-VRNLSYRLRARDGSRGHGVVNLAIKLE 141
S L G V + I L
Sbjct: 134 SDTFEGWVDL------EPEGKVFVVITLT 156
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-05
Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 32/150 (21%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIR--------PFVTITTYPPATTSGDKHCHVYRTRVDD 52
++I I A LK T+++L + P++ + + +T
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV---------DDSRIGQTATK- 57
Query: 53 HGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG 112
+P W D+F I L ++ I + C I ++ G
Sbjct: 58 QKTNSPAWHDEFVTDV-------CNGRKIELAVFHDAPIGYDDFVANCTIQFEEL-LQNG 109
Query: 113 GSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142
L G V + I L
Sbjct: 110 SRHFEDWIDL------EPEGKVYVIIDLSG 133
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 2e-04
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 21/141 (14%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ +L A + +F P+V + RTR ++ +NP W
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVEL-------FISTTPDSRKRTRHFNN-DINPVW 56
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+ F D N+ + + L + LG V+ + G + + +
Sbjct: 57 NETFEFILD-----PNQENVLEITLMDANYVM-DETLGTATFTVSSM---KVGEKKEVPF 107
Query: 121 RLRARDGSRGHGVVNLAIKLE 141
V+ +++++
Sbjct: 108 IFN----QVTEMVLEMSLEVA 124
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 2e-04
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 23/132 (17%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ + I+S Q L + +S + P V + + + +T V + G NP W
Sbjct: 499 LRVRIISGQQLPKVNKN-KNSIVDPKVIVEIHGV-----GRDTGSRQTAVITNNGFNPRW 552
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+F A + + S +G IP N + G Y
Sbjct: 553 DMEFEFEVTVPDL-----ALVRFMVEDYDSSSKNDFIGQSTIPWNSL--KQG-------Y 598
Query: 121 R---LRARDGSR 129
R L +++G +
Sbjct: 599 RHVHLLSKNGDQ 610
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 6e-04
Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 31/148 (20%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCH----VYRTRVDDHGGV 56
+ +T+L A+ L F PF I G CH V T
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPD---PFAKI------VVDGSGQCHSTDTVKNTL------- 50
Query: 57 NPTWGDKFYVPTDCNAFFANRYACIYLQLY---TKTLISGQTLLGWCQIPVNDI-GFPPG 112
+P W + + + I + ++ G LG ++ N I
Sbjct: 51 DPKWNQHYD-------LYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDT 103
Query: 113 GSVRNLSYRLRARDGSRGHGVVNLAIKL 140
G R +L D G + ++++
Sbjct: 104 GYQRLDLCKLNPSDTDAVRGQIVVSLQT 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 192 | |||
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.91 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.9 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.88 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.87 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.87 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.87 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.86 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.86 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.86 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.84 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.84 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.83 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.82 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.81 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.8 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.8 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.8 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.8 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.79 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.79 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.79 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.78 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.78 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.78 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.78 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.78 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.78 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.77 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.77 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.77 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.76 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.76 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.76 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.75 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.75 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.75 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.75 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.75 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.72 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.67 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.64 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.63 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.62 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.61 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.59 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.55 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.54 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.53 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.39 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.86 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.86 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 95.95 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 95.9 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 95.75 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 94.98 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 93.55 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 93.12 | |
| 2qzq_A | 152 | Axin interactor, dorsalization associated protein; | 84.85 |
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=158.63 Aligned_cols=128 Identities=18% Similarity=0.303 Sum_probs=102.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ . +.+||||++.+ ++ ++++|++++ ++.||+|||+|.|.+....+.. ...
T Consensus 9 L~v~v~~a~~L~~~~--~--g~~dpyv~v~~------~~----~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~--~~~ 71 (140)
T 2dmh_A 9 LRVIVESASNIPKTK--F--GKPDPIVSVIF------KD----EKKKTKKVD-NELNPVWNEILEFDLRGIPLDF--SSS 71 (140)
T ss_dssp EEEEEEEEESCCCCS--S--SCCCEEEEEEC------SS----CEEECCCCC-SCSSCEEEEEEEEECSSCCCCT--TCE
T ss_pred EEEEEEEeeCCCCCC--C--CCCCeEEEEEE------CC----EeEEeeeec-CCCCCccCcEEEEEecccccCC--CCE
Confidence 689999999999988 3 58999999976 22 579999986 5799999999999997632211 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEE---EEeCCCCcccEEEEEEEEEeecCCCCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYR---LRARDGSRGHGVVNLAIKLEPVVPDTS 148 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~---L~~~~G~k~~G~l~l~v~f~~~~~~~~ 148 (192)
|.|+|||++.+++|++||++.|+|.+|.... ....||+ |.++.+.+.+|.|+|+++|.|..+++|
T Consensus 72 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~~~s 139 (140)
T 2dmh_A 72 LGIIVKDFETIGQNKLIGTATVALKDLTGDQ---SRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSGPSS 139 (140)
T ss_dssp EEEEEEETTCSSSCCCCEEEEEEGGGTCSSS---CEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBSSSC
T ss_pred EEEEEEECCCCCCCceEEEEEEEHHHhccCC---CceeEEeeeeccCCCCCCCCCEEEEEEEEECCCCCCC
Confidence 9999999999888999999999999996432 2344666 777666567899999999999665443
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=157.96 Aligned_cols=122 Identities=20% Similarity=0.440 Sum_probs=101.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ ++++|+++++++.||.|||+|.|.+.+ . ...
T Consensus 12 L~v~v~~a~~L~~~d--~~-g~~dpyv~v~~------~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~-~-----~~~ 72 (136)
T 1wfj_A 12 LEVVLVSAKGLEDAD--FL-NNMDPYVQLTC------RT----QDQKSNVAEGMGTTPEWNETFIFTVSE-G-----TTE 72 (136)
T ss_dssp EEEEEEEEEECSSCC--SS-CSSCCCEEEES------SS----CEEECCCCTTCCSSCEEEEEEEEEEES-S-----CCE
T ss_pred EEEEEEeccCCCCcc--cC-CCcCceEEEEE------CC----ccceeEeccCCCCCCccCcEEEEEECC-C-----CCE
Confidence 689999999999988 34 58999999975 32 468999997679999999999999876 1 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~ 145 (192)
|.|+|||++.+++|++||.+.|+|.++.... .....||+|. +++ +..|.|+|++.|.|..+
T Consensus 73 l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~w~~L~-~~~-~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 73 LKAKIFDKDVGTEDDAVGEATIPLEPVFVEG--SIPPTAYNVV-KDE-EYKGEIWVALSFKPSGP 133 (136)
T ss_dssp EEEEECCSSSCTTTCCSEEEEEESHHHHHHS--EEEEEEEEEE-ETT-EEEEEEEEEEEEEECCS
T ss_pred EEEEEEECCCCCCCceEEEEEEEHHHhccCC--CCCcEEEEee-cCC-ccCEEEEEEEEEEeCCC
Confidence 9999999999888999999999999995322 4456799998 444 88999999999999654
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=153.68 Aligned_cols=128 Identities=16% Similarity=0.355 Sum_probs=96.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+.. ..+....+++|+++++ +.||.|||+|.|.+... ...
T Consensus 22 L~V~v~~a~~L~~~d--~~-g~~dpyv~v~~~~----~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~------~~~ 87 (153)
T 3b7y_A 22 VRVRVIAGIGLAKKD--IL-GASDPYVRVTLYD----PMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQ------QHR 87 (153)
T ss_dssp EEEEEEEEESCC----------CCEEEEEEEEE----TTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTT------TCE
T ss_pred EEEEEEEeeCCCCCC--CC-CCCCcEEEEEEEC----CCCccceeeeCccccC-CCCCCCCCEEEEEecCC------CCE
Confidence 689999999999987 33 5899999998732 1110136789999975 89999999999998762 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC---CcceeEEEEEEeCCC-CcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG---GSVRNLSYRLRARDG-SRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~---~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+++|++||++.|+|.++..... ..+...||+|...++ ++..|+|+|++.|.|
T Consensus 88 l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 88 LLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred EEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 99999999998889999999999999965432 123357999976432 367899999999975
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=150.82 Aligned_cols=117 Identities=20% Similarity=0.299 Sum_probs=96.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ ++++|+++++ +.||.|||+|.|.+.+. ...
T Consensus 15 L~v~v~~a~~L~~~d--~~-g~~dpyv~v~~------~~----~~~kT~~~~~-t~nP~wne~f~f~~~~~------~~~ 74 (133)
T 2ep6_A 15 LQVKVLKAADLLAAD--FS-GKSDPFCLLEL------GN----DRLQTHTVYK-NLNPEWNKVFTFPIKDI------HDV 74 (133)
T ss_dssp EEEEEEEEESCCCSS--SS-SCCCEEEEEEE------TT----EEEECCCCSS-CSSCCCCEEEEEEESCT------TCE
T ss_pred EEEEEEeeECCCCCC--CC-CCcCeEEEEEE------CC----EEEEeeeecC-CCCCccccEEEEEecCC------CCE
Confidence 689999999999987 33 58999999976 32 5789999975 89999999999999762 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+++|++||.+.|+|.++.... ..||+|..+++ ++.+|.|+|.++|..
T Consensus 75 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 75 LEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-----PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp EEEEEEEEETTEEEEECCBCEEEGGGCCSSC-----CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHccCCC-----ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 9999999999888999999999999996422 35899987543 258999999999863
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=155.04 Aligned_cols=129 Identities=17% Similarity=0.350 Sum_probs=94.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||+|.+... .+...++++|++++ ++.||.|||+|.|.+... ...
T Consensus 10 L~V~v~~a~~L~~~d--~~-g~~DPyv~v~l~~~----~~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~------~~~ 75 (176)
T 3m7f_B 10 VRVKVIAGIGLAKKD--IL-GASDPYVRVTLYDP----MSGILTSVQTKTIK-KSLNPKWNEEILFRVLPQ------RHR 75 (176)
T ss_dssp EEEEEEEEESCC-----CC-CCCCEEEEEEEEET----TTEEEEEEECCCCS-SCSSCEEEEEEEEEECTT------TCE
T ss_pred EEEEEEEeeCCCCcC--CC-CCcCcEEEEEEECC----CCCcccceeCceEC-CCCCCcccceEEEEEcCC------CCE
Confidence 689999999999987 34 58999999987321 11012578999997 589999999999998762 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC---CcceeEEEEEEeCCC-CcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG---GSVRNLSYRLRARDG-SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~---~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~~ 143 (192)
|.|+|||++.+++|++||.+.|+|.++..... ......||+|....+ ++.+|.|+|+++|.|.
T Consensus 76 L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 76 ILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred EEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 99999999998899999999999999965322 122336899986432 3678999999999997
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=155.69 Aligned_cols=118 Identities=19% Similarity=0.319 Sum_probs=93.6
Q ss_pred CEEEEEEeeCCCCCCCC----CcC---CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCcc
Q 029535 1 MEITILSAQGLKNTSFT----LFS---SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAF 73 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~----~~~---~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l 73 (192)
|+|+|++|++|+.++.. +|+ +.+||||+|.+ ++ .+..||++++ ++.||+|||+|.|.+.. .
T Consensus 31 L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l------~~---~~~~kT~v~~-ktlnP~WNE~F~f~v~~-~- 98 (157)
T 2fk9_A 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV------DQ---VRVGQTSTKQ-KTNKPTYNEEFCANVTD-G- 98 (157)
T ss_dssp EEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE------TT---EEEEECCCCS-SCSSCEEEEEEEEEEEE-E-
T ss_pred EEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE------CC---EeeEEeeecC-CCCCCccCcEEEEEcCC-C-
Confidence 68999999999988720 111 46899999987 32 2457999876 58999999999999865 1
Q ss_pred ccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCC-CCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 74 FANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFP-PGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 74 ~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~-~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
..|.|+|||++.++.|++||.+.|||.++... +++.....||+|. ++|.|+|.+.|.
T Consensus 99 -----~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 -----GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------PEGKVFVVITLT 156 (157)
T ss_dssp -----CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------SSCEEEEEEEEC
T ss_pred -----CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------CCcEEEEEEEEE
Confidence 47999999999988899999999999999643 1224466799983 378999999885
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=147.08 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=93.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCC----------CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEccc
Q 029535 1 MEITILSAQGLKNTSFTLFSS----------RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDC 70 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~----------~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~ 70 (192)
|+|+|++|++|++.+ .+++ .+||||++.+ ++ ....+|++.. ++.||+|||+|.|.+..
T Consensus 8 L~v~v~~a~~L~~~d--~~~~~~~g~~~~~~~~DPyv~v~l------~~---~~~~~T~~~~-~t~nP~WnE~f~f~v~~ 75 (136)
T 1gmi_A 8 LKIKICEAVSLKPTA--WSLRDAVGPRPQTFLLDPYIALNV------DD---SRIGQTATKQ-KTNSPAWHDEFVTDVCN 75 (136)
T ss_dssp EEEEEEEEESCCCCH--HHHCC-CCSSCCCCCCCEEEEEEE------TT---EEEEECCCCS-SCSSCEEEEEEEEEEEE
T ss_pred EEEEEEeCcCCCCcc--cccccccccccCCcCcCcEEEEEE------CC---eEeeeeeEEC-CCcCCccCCEEEEEecC
Confidence 689999999999887 2321 2899999976 32 2457899876 58999999999999876
Q ss_pred CccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 71 NAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 71 ~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
. ..|.|+|||++.+++|++||.+.|+|.++..... .....||+| +++|.|+|.++|.+.
T Consensus 76 -~------~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~-~~~~~w~~L------~~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 76 -G------RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS-RHFEDWIDL------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp -E------CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC-SEEEEEEEC------BSSCEEEEEEEEEEE
T ss_pred -C------CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCC-CCccEEEEc------CCCeEEEEEEEEEec
Confidence 1 4799999999998889999999999999975432 223568876 357999999999764
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-21 Score=145.33 Aligned_cols=116 Identities=25% Similarity=0.380 Sum_probs=95.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||.+.+ + .++++|++++ ++.||.|||+|.|.+.... ..
T Consensus 19 L~V~v~~a~~L~~~d--~~-g~~dpyv~v~~------~----~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~------~~ 78 (148)
T 3kwu_A 19 ISITVVCAQGLQAKD--KT-GSSDPYVTVQV------G----KTKKRTKTIY-GNLNPVWEENFHFECHNSS------DR 78 (148)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEE------T----TEEEECCCCC-SCSSCEEEEEEEEEECSTT------CE
T ss_pred EEEEEEeeeCCCCCC--CC-CCcCeEEEEEE------C----CEEEECCccC-CCCCCCcccEEEEEecCCC------CE
Confidence 689999999999987 33 58999999976 2 2688999987 5799999999999997621 47
Q ss_pred EEEEEEEccCC-----------CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLI-----------SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~-----------~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+ ++|++||.+.|+|.++.. ....||+|..+++ .+.+|.|+|++.|.
T Consensus 79 l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG-----EMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp EEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCS-----EEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred EEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCcC-----CCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 99999999975 689999999999999931 2346899985433 24789999999985
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=151.86 Aligned_cols=123 Identities=15% Similarity=0.252 Sum_probs=98.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .++ .+||||+|.+ ++ +++||++++ ++.||+|||+|.|.+.. ...
T Consensus 38 L~V~V~~A~~L~~~~--~~~-~sDPYv~v~~------~~----~~~kT~v~~-~tlnP~Wne~f~f~v~~-------~~~ 96 (173)
T 2nq3_A 38 LQITVISAKLKENKK--NWF-GPSPYVEVTV------DG----QSKKTEKCN-NTNSPKWKQPLTVIVTP-------VSK 96 (173)
T ss_dssp EEEEEEEEEECCCC----CC-CCCEEEEEEE------TT----EEEECCCCS-SCSSCEEEEEEEEEECT-------TCE
T ss_pred EEEEEEEeECCCCcc--cCC-CCCeEEEEEE------CC----EEeEccccC-CCCCCeECCEEEEEeCC-------CCE
Confidence 689999999999544 233 4999999976 32 689999987 58999999999999854 148
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcce--eEEEEEEeCCC-CcccEEEEEEEEEeecC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVR--NLSYRLRARDG-SRGHGVVNLAIKLEPVV 144 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~--~~~y~L~~~~G-~k~~G~l~l~v~f~~~~ 144 (192)
|.|+|||++.+++|++||++.|+|.++.....+... ..|++|...++ .+..|+|++.+.+.+..
T Consensus 97 L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 97 LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred EEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence 999999999988999999999999999643222222 56899987632 25799999999999764
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=141.96 Aligned_cols=119 Identities=17% Similarity=0.300 Sum_probs=92.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ +++ .++++|++++ ++.||.|||+|.|.+... ..
T Consensus 7 L~V~v~~a~~L~~~d--~~-g~sDpyv~v~~------~~~--~~~~kT~v~~-~t~nP~wne~f~f~v~~~-------~~ 67 (132)
T 3pyc_A 7 IRLTVLCAKNLAKKD--FF-RLPDPFAKIVV------DGS--GQCHSTDTVK-NTLDPKWNQHYDLYVGKT-------DS 67 (132)
T ss_dssp EEEEEEEEESCCCCS--TT-CCCCEEEEEEE------TTT--CCEEECCCCS-SCSSCEEEEEEEEEEETT-------CC
T ss_pred EEEEEEEeECCCCCC--CC-CCcCeEEEEEE------CCC--CceEECCccC-CCCCCCccCEEEEEeCCC-------CE
Confidence 689999999999988 34 58999999986 222 2689999996 589999999999998762 24
Q ss_pred EEEEEEEccCCCC---CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC---CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISG---QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG---SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~---d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G---~k~~G~l~l~v~f 140 (192)
|.|+|||++.+++ |++||.+.|++.++....+. ...+++|...++ .+.+|+|++.+..
T Consensus 68 l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 68 ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDT--GYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTS--CCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred EEEEEEECCCCCCCCCCCceEEEEEeHHHhhccccc--CcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 9999999998765 78999999999988322221 124688876532 2468999999864
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=144.01 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=82.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|.. . +.+||||++.. +..+|+++.+++.||.|||+|.|.+... ...
T Consensus 7 L~V~V~~A~~l~~-~-----g~~DPYv~v~~------------~~~kt~~~~~~t~nP~WnE~f~f~v~~~------~~~ 62 (131)
T 2cjt_A 7 LCVGVKKAKFDGA-Q-----EKFNTYVTLKV------------QNVKSTTIAVRGSQPSWEQDFMFEINRL------DLG 62 (131)
T ss_dssp EEEEEEEEECSSC-G-----GGCEEEEEEEE------------TTEEEECCCEESSSCEEEEEEEEEECCC------SSE
T ss_pred EEEEEEEeECCCC-C-----CCcCeEEEEEe------------cCEEEeEecCCCCCceECCEEEEEEeCC------CCe
Confidence 6899999998853 1 47899999861 2356666655689999999999999762 136
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCC-CC--cceeEEEEEEeCCCCcccEE-------EEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPP-GG--SVRNLSYRLRARDGSRGHGV-------VNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~-~~--~~~~~~y~L~~~~G~k~~G~-------l~l~v~f~ 141 (192)
|.|+|||++ +++|++||++.|||.++.... ++ .+..++|++..++| +..|+ +.+.++|.
T Consensus 63 L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~G~~~p~~~~~~~~~~~~ 131 (131)
T 2cjt_A 63 LTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADS-EICGTKDPTFHRILLDAHFE 131 (131)
T ss_dssp EEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CCSCCCCCEEEEEEEEC
T ss_pred EEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCC-cCcceECCCccEEEEEEEeC
Confidence 999999999 789999999999999996432 22 45667788877776 66776 88888874
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=136.74 Aligned_cols=120 Identities=18% Similarity=0.310 Sum_probs=91.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++..-+.+.+||||++.+ +++ ..+++||++++ ++.||+|||+|.|.+.... ...
T Consensus 5 L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~------~~~-~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-----~~~ 71 (126)
T 1rlw_A 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI------STT-PDSRKRTRHFN-NDINPVWNETFEFILDPNQ-----ENV 71 (126)
T ss_dssp EEEEEEEEESCCSCHHHHHHCCCCEEEEEEC------TTS-TTCCEECCCCT-TCSSCEEEEEEEEEECTTS-----CCE
T ss_pred EEEEEEeeeCCCCCCccccCCCCCCEEEEEE------ccC-CCceEEccccC-CCCCCcccceEEEEecCCC-----CCE
Confidence 6899999999998520012258999999976 222 13689999997 4899999999999996521 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+ +|++||.+.|+|.++.. +.....||+|. + +.+|.|+|.+...
T Consensus 72 l~i~V~d~d~~-~~~~iG~~~i~l~~l~~---~~~~~~~~~L~---~-~~~g~i~~~le~~ 124 (126)
T 1rlw_A 72 LEITLMDANYV-MDETLGTATFTVSSMKV---GEKKEVPFIFN---Q-VTEMVLEMSLEVA 124 (126)
T ss_dssp EEEEEEECCSS-CCEEEEEEEEEGGGSCT---TCEEEEEEEET---T-TEEEEEEEEEECC
T ss_pred EEEEEEECCCC-CCceeEEEEEEHHHccC---CCcEEEEEEcC---C-CceEEEEEEEEeC
Confidence 99999999987 58999999999999963 23456789984 2 4578888877644
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=141.29 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=91.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|.. . +.+||||+|.. +..||+++.+++.||+|||+|.|.+... + ..
T Consensus 16 L~V~V~~A~~l~~-----~-g~~DPYV~v~~------------~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~---~~ 71 (167)
T 2cjs_A 16 LCVGVKKAKFDGA-----Q-EKFNTYVTLKV------------QNVESTTIAVRGSQPSWEQDFMFEINRL---D---LG 71 (167)
T ss_dssp EEEEEEEEECSSC-----G-GGCEEEEEEEE------------TTEEEECCCEESSSCEEEEEEEEECCCT---T---SE
T ss_pred EEEEEEEEECCCC-----C-CCCCeEEEEEe------------cceEEEEecCCCCCCCCCCEEEEEeeCC---C---CE
Confidence 6799999998842 2 47999999861 2456777765689999999999999862 1 37
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCC-CC--cceeEEEEEEeCCCCcccEE-------EEEEEEEeecC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPP-GG--SVRNLSYRLRARDGSRGHGV-------VNLAIKLEPVV 144 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~-~~--~~~~~~y~L~~~~G~k~~G~-------l~l~v~f~~~~ 144 (192)
|.|+|||++ +++|++||++.|||.++.... ++ .+..++|++..++| +..|+ +++.++|....
T Consensus 72 L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g-~~~g~~~p~~~~lll~~~~e~~~ 143 (167)
T 2cjs_A 72 LTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADS-EICGTKDPTFHRILLDAHFELPL 143 (167)
T ss_dssp EEEEEEECC-SSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETT-EEEEEEEEEEEEEEEEEEEECCC
T ss_pred EEEEEEECC-CCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCC-CCCceEccccceEEEEEEeecCC
Confidence 999999999 789999999999999995432 22 45667888887776 55554 77888886643
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=134.36 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=85.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .+++.+||||++.+. ++ +.++++|++++ ++.||+|||+|.|. +....+ . ..
T Consensus 24 L~v~v~~a~~L~~~d--~~~~~~dpyv~v~~~------~~-~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~~-~--~~ 90 (138)
T 1ugk_A 24 FVVNIKEARGLPAMD--EQSMTSDPYIKMTIL------PE-KKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQI-Q--EL 90 (138)
T ss_dssp EEEEEEEEESCCCCB--TTTTBCEEEEEEEEE------TT-TCSEEECCCCS-SCSSCEEEEEEEEECCCSTTG-G--GC
T ss_pred EEEEEEEeeCCCCCC--CCCCCCCCEEEEEEe------cC-CCceEecCcCc-CCCCCcEeeEEEEcCcCHHHh-c--cC
Confidence 689999999999987 444689999999863 22 13789999997 58999999999996 765332 1 25
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|||++.+++|++||.+.|+|.++.... .....|++|..
T Consensus 91 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~~~~~~~l~~ 133 (138)
T 1ugk_A 91 ALHFTILSFDRFSRDDIIGEVLIPLSGIELSE--GKMLMNREIIS 133 (138)
T ss_dssp EEEEEEEEECSSCCCCCCEEEEEECTTCCCTT--CCEEEEEECBS
T ss_pred EEEEEEEECCCCCCCcEEEEEEEehhHccCCC--Ccchhhhhhhc
Confidence 89999999999888999999999999996432 22345788764
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-20 Score=142.26 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=86.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ . .+.+||||++.+.+. +++ +..++||++++ ++.||+|||+|.|.+....+ . ...
T Consensus 45 L~V~Vi~a~~L~~~d--~-~g~sDPyVkv~l~~~---~~~-~~~~~kT~v~~-~tlnP~wnE~F~f~v~~~~l-~--~~~ 113 (155)
T 2z0u_A 45 FAILIIQLSNLSALL--Q-QQDQKVNIRVAVLPC---SES-TTCLFRTRPLD-ASDTLVFNEVFWVSMSYPAL-H--QKT 113 (155)
T ss_dssp EEEEEEEEECGGGTC--C-SCCSEEEEEEEEESC---SCH-HHHEEECCCEE-CCSSEEEEEEEEEECCHHHH-H--HCE
T ss_pred EEEEEEEccCcCCcc--c-CCCCCEEEEEEEecC---CCC-CccceeCCcCC-CCCCCccccEEEEEcCHHHh-C--cCE
Confidence 689999999999987 3 358999999987431 111 13589999997 48999999999999876322 1 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|||++.++++++||++.|+|.++.... .....||+|.
T Consensus 114 L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~--~~~~~W~~L~ 154 (155)
T 2z0u_A 114 LRVDVCTTDRSHLEECLGGAQISLAEVCRSG--ERSTRWYNLL 154 (155)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECTTSCTTC--CCEEEEEEEB
T ss_pred EEEEEEECCCCCCCcEEEEEEEEHHHccCCC--CccccceEcc
Confidence 9999999999989999999999999995222 3345689884
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=134.87 Aligned_cols=109 Identities=24% Similarity=0.430 Sum_probs=86.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEc-ccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPT-DCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v-~~~~l~~~~~~ 79 (192)
|+|+|++|++|+..+ . .+.+||||++.+. ++ +.+++||++++ ++.||+|||+|.|.+ +...+ .. .
T Consensus 28 L~v~v~~a~~L~~~d--~-~g~~dpyv~v~~~------~~-~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~-~~--~ 93 (141)
T 2d8k_A 28 LTVKIMKAQELPAKD--F-SGTSDPFVKIYLL------PD-KKHKLETKVKR-KNLNPHWNETFLFEGFPYEKV-VQ--R 93 (141)
T ss_dssp EEEEEEEEESCCCCS--S-SSCCCEEEEEEEE------SC-CSSEEECCCCT-TCSSCCCCEEEEECSCCHHHH-TT--S
T ss_pred EEEEEEEeECCCCCC--C-CCCCCcEEEEEEE------CC-CCccEeCceEc-CCCCCccccEEEECccCHHHc-cc--C
Confidence 689999999999987 3 3589999999862 22 13689999986 689999999999985 32111 11 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
.|.|+|||++.+++|++||.+.|+|.++.... ....||+|...+
T Consensus 94 ~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~~~~ 137 (141)
T 2d8k_A 94 ILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ---MQTFWKDLKPSG 137 (141)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEETTTSCTTS---CEEEEECCEECC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC---CccEEEECcCCC
Confidence 89999999999888999999999999996432 356799998653
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=136.77 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=88.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEc-ccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPT-DCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v-~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .. +.+||||++.+.. ++ ...++++|+++++ +.||+|||+|.|.+ ....+ . ..
T Consensus 23 L~v~v~~a~~L~~~d--~~-g~~dpyv~v~~~~----~~-~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~-~--~~ 90 (141)
T 1v27_A 23 LIVTILGAKDLPSRE--DG-RPRNPYVKIYFLP----DR-SDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF-R--ER 90 (141)
T ss_dssp EEEEEEEEESCCCCS--SS-CCCCEEEECCCSS----CC-SSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGG-G--TC
T ss_pred EEEEEEEccCCCCcC--CC-CCCCCEEEEEEec----CC-CCCcceeCccccC-CCCCccccEEEEccCCHHHh-c--CC
Confidence 689999999999987 33 5899999986532 11 1246889999975 89999999999994 43221 1 25
Q ss_pred EEEEEEEEccCCCC--CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE
Q 029535 80 CIYLQLYTKTLISG--QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG 132 (192)
Q Consensus 80 ~L~veV~d~~~~~~--d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G 132 (192)
.|.|+|||++.++. |++||.+.|+|.++... + ...||+|...+.++..|
T Consensus 91 ~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~--~--~~~W~~L~~~~~g~~sg 141 (141)
T 1v27_A 91 MLEITLWDQARVREEESEFLGEILIELETALLD--D--EPHWYKLQTHDSGPSSG 141 (141)
T ss_dssp EEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS--S--EEEEEECBCCSSCCCCC
T ss_pred EEEEEEEECCCCcCCCCceEEEEEEEccccCCC--C--CCceEECcccccCCCCC
Confidence 89999999998876 89999999999998642 2 45799998755445443
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=134.12 Aligned_cols=108 Identities=16% Similarity=0.268 Sum_probs=84.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+. + . .+.+||||++.+.. ++. ...++||++++ ++.||+|||+|.|. +....+ .. .
T Consensus 22 L~V~V~~a~~L~~-~--~-~g~~DPyv~v~l~~----~~~-~~~~~kT~v~~-~t~nP~wnE~f~f~~v~~~~l-~~--~ 88 (134)
T 2b3r_A 22 LFIMVMHIKDLVT-E--D-GADPNPYVKTYLLP----DTH-KTSKRKTKISR-KTRNPTFNEMLVYSGYSKETL-RQ--R 88 (134)
T ss_dssp EEEEEEEEECCCC-T--T-SCCCCEEEEEEEES----CSS-SCCCEECCCCC-SCSSCEEEEEEEEESCCHHHH-TT--C
T ss_pred EEEEEEEeeCCCC-C--C-CCCCCeEEEEEEEc----CCC-CCceecCCcCc-CCCCCCCccEEEECCcCHHHh-Cc--C
Confidence 6899999999996 4 2 35899999998742 111 24688999997 58999999999999 765222 12 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|||++.+++|++||.+.|+|.++... .....||+|..
T Consensus 89 ~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L~~ 130 (134)
T 2b3r_A 89 ELQLSVLSAESLRENFFLGGITLPLKDFNLS---KETVKWYQLTA 130 (134)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEGGGSCTT---SCEEEEEECBC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEhhhccCC---CCcceeEECCC
Confidence 8999999999988899999999999999642 23457999864
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=135.61 Aligned_cols=120 Identities=12% Similarity=0.200 Sum_probs=100.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|.+|.+|+ ++.|||+++... ..+++|+++++++.||+|||+|+|++.. ++..+ ++
T Consensus 23 L~V~l~~a~~Lp--------g~~Dp~akv~FR----------g~k~kTkvi~~~~~npvfnE~F~wpl~~-~ld~~--e~ 81 (144)
T 3l9b_A 23 LIVHLKTVSELR--------GRADRIAKVTFR----------GQSFYSRVLENCEDVADFDETFRWPVAS-SIDRN--EV 81 (144)
T ss_dssp EEEEEEEEESCC--------SCEEEEEEEEET----------TEEEECCCEEEECSCEEEEEEEEEEESS-CCCTT--CE
T ss_pred EEEEEEEecCCC--------CCCCCeEEEEEe----------ccceeeEEeccCCCCceEcceEEecCCC-CCCCC--CE
Confidence 689999999999 267999999862 2689999998678999999999999987 54433 69
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVV 144 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~ 144 (192)
|.|+|+|++.++++++||++.|+|+++...+ .+ .++-+|.+.++....+.|.|.+.|.|+.
T Consensus 82 L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~--~l-~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 82 LEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN--RV-EVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEEECTTSCCEEEEEEEEESHHHHHHS--EE-EEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred EEEEEEECccccCCCEEEEEEEEhHHhccCC--eE-EEeecccCCCCCccccEEEEEEEecCCC
Confidence 9999999999999999999999999997533 22 3578899888744568999999999853
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=130.14 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=79.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEc-ccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPT-DCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v-~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.. ++ .+..+++|++++ ++.||.|||+|.|.+ ....+ . ..
T Consensus 20 L~v~v~~a~~L~~~d--~~-~~~dpyv~v~~~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~-~--~~ 87 (129)
T 2bwq_A 20 LIVTILGAKDLPSRE--DG-RPRNPYVKIYFLP----DR-SDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREF-R--ER 87 (129)
T ss_dssp EEEEEEEEESCCCCT--TS-CCBCEEEEEEEES----SC-SGGGEEECCCCS-SBSSCEEEEEEEECSCCGGGG-G--GC
T ss_pred EEEEEEEeeCCCCCC--CC-CCCCCEEEEEEec----CC-CCCcceeccccc-CCCCCccccEEEEccCCHHHh-c--CC
Confidence 689999999999987 33 5899999998742 11 125789999997 489999999999995 32121 1 25
Q ss_pred EEEEEEEEccCCCC--CeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISG--QTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~--d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|||++.+++ |++||.+.|+|.++.... ...||+|
T Consensus 88 ~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~----~~~W~~L 128 (129)
T 2bwq_A 88 MLEITLWDQARVREEESEFLGEILIELETALLDD----EPHWYKL 128 (129)
T ss_dssp EEEEEEEEC-------CEEEEEEEEEGGGCCCSS----CEEEEEC
T ss_pred eEEEEEEECCcCcCcCCceeEEEEEEccccCCCc----CCccEEC
Confidence 89999999998876 999999999999986422 4568887
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=135.14 Aligned_cols=107 Identities=18% Similarity=0.352 Sum_probs=85.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+. ++ +.++++|+++++ +.||.|||+|.|.+....+ .. ..
T Consensus 44 L~V~v~~a~~L~~~d--~~-g~~dpyv~v~~~------~~-~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l-~~--~~ 109 (152)
T 1rsy_A 44 LLVGIIQAAELPALD--MG-GTSDPYVKVFLL------PD-KKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL-GG--KT 109 (152)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEEE------TT-CCSCEECCCCTT-CSSCEEEEEEEECCCHHHH-TT--CE
T ss_pred EEEEEEEeECCCCcc--CC-CCcCeEEEEEEE------cC-CCceEeccccCC-CCCCcCcccEEEeecHHHc-CC--CE
Confidence 689999999999987 33 589999999863 22 136889999974 8999999999999875222 11 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.+++|++||.+.|+|.++... .....||+|..
T Consensus 110 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~~ 150 (152)
T 1rsy_A 110 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQS 150 (152)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCCS---SCEEEEEECBC
T ss_pred EEEEEEECCCCCCCcEEEEEEEEchhccCC---CCcceEEECCC
Confidence 999999999988899999999999999532 23456999863
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-19 Score=133.40 Aligned_cols=106 Identities=18% Similarity=0.364 Sum_probs=84.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+. ++ +.++++|++++ ++.||.|||+|.|.+....+ .. ..
T Consensus 36 L~v~v~~a~~L~~~d--~-~g~~dpyv~v~l~------~~-~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~~--~~ 101 (143)
T 3f04_A 36 LLVGIIQAAELPALD--M-GGTSDPYVKVFLL------PD-KKKKFETKVHR-KTLNPVFNEQFTFKVPYSEL-GG--KT 101 (143)
T ss_dssp EEEEEEEEECCCCBG--G-GBCCCEEEEEEEE------SC-CSCCEECCCCC-SCSSCEEEEEEEECCCHHHH-TT--CE
T ss_pred EEEEEEEecCCCCCC--C-CCCcCcEEEEEEE------CC-CCccEECccCc-CCCCCcCcCeEEEeecHhhc-CC--CE
Confidence 689999999999987 3 3589999999862 22 13689999987 47999999999999875222 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|||++.+++|++||++.|+|.++... .....||+|.
T Consensus 102 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 141 (143)
T 3f04_A 102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQ 141 (143)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCTT---SCEEEEEECB
T ss_pred EEEEEEeCCCCCCCceEEEEEEEHHHccCC---CCcceEEECc
Confidence 999999999988999999999999999642 2345689875
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-19 Score=135.27 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=87.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ ...+.+||||++.+.+ ++ ....+++|++++ ++.||+|||+|.|.+....+ . ...
T Consensus 25 L~V~v~~a~~L~~~d--~~~~~~dpyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~-~--~~~ 93 (148)
T 3fdw_A 25 LVVHVKECHQLAYAD--EAKKRSNPYVKTYLLP----DK-SRQGKRKTSIKR-DTVNPLYDETLRYEIPESLL-A--QRT 93 (148)
T ss_dssp EEEEEEEEESCCCSB--TTTTBCCEEEEEEEET----CC-SGGGEEECCCCS-SCSSCEEEEEEEEECCSTTG-G--GCE
T ss_pred EEEEEEEecCCCCcc--cCCCCCCeEEEEEEEc----CC-cccCccccccCC-CCCCCcEeeEEEEEeChhHh-C--ceE
Confidence 689999999999876 2346899999998732 11 124689999987 58999999999999877332 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
|.|+|||++.+++|++||.+.|+|.++.... ....||+|..+.
T Consensus 94 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~~~~ 136 (148)
T 3fdw_A 94 LQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK---KLDHCLPLHGKI 136 (148)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEEHHHHHHHC---CSEEEEECBCC-
T ss_pred EEEEEEECCCCcCCcEEEEEEEEcccccccC---CccceEECcCcc
Confidence 9999999999888999999999999995322 234699998654
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=143.51 Aligned_cols=126 Identities=18% Similarity=0.362 Sum_probs=99.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+. ++. .++++|+++++ +.||.|||+|.|.+....+ . ...
T Consensus 21 L~v~v~~a~~L~~~d--~-~~~~dpyv~v~~~------~~~-~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~-~--~~~ 86 (284)
T 2r83_A 21 LLVGIIQAAELPALD--M-GGTSDPYVKVFLL------PDK-KKKFETKVHRK-TLNPVFNEQFTFKVPYSEL-A--GKT 86 (284)
T ss_dssp EEEEEEEEECCCCCS--S-SSSCCEEEEEEEE------TCT-TSCEECCCCCS-CSSCEEEEEEEECCCGGGC-T--TCE
T ss_pred EEEEEEEeeCCCCCC--C-CCCCCeEEEEEEE------cCC-CceEeCCcccC-CCCCeeCceEEEEechHHh-C--cCE
Confidence 689999999999987 3 3589999999762 221 35789999874 7999999999999876322 1 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC--CcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG--SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G--~k~~G~l~l~v~f~~~ 143 (192)
|.|+|||++.+++|++||++.|+|.++... .....||+|....+ ....|.|++.+.+.+.
T Consensus 87 l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 87 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT 148 (284)
T ss_dssp EEEEEEECCSSSCCCEEEEEEEEGGGCCCS---SCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred EEEEEEECCCCCCCceeEEEEEcchhcccC---CcceeEEEeeccccccccccccEEEEEEecCc
Confidence 999999999988899999999999999642 23456999986533 2467999999998763
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=132.94 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=86.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||+|.+.. ++ ....++||+++++ +.||.|||+|.|.+....+ ...
T Consensus 33 L~v~v~~a~~L~~~d--~~-g~~dpyv~v~~~~----~~-~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~----~~~ 99 (149)
T 1a25_A 33 LIVVVRDAKNLVPMD--PN-GLSDPYVKLKLIP----DP-KSESKQKTKTIKC-SLNPEWNETFRFQLKESDK----DRR 99 (149)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEEES----CT-TCSSCEECCCCSS-CSSCEEEEEEEEECCSGGG----GCE
T ss_pred EEEEEEEeeCCCCCC--CC-CCcCeEEEEEEEC----CC-CCcceEecceeCC-CCCCcCCcEEEEEeccccC----CCE
Confidence 689999999999987 33 5899999998732 11 1146889999975 8999999999999976221 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.+++|++||.+.|+|.++...+ ...||+|..
T Consensus 100 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~----~~~W~~L~~ 139 (149)
T 1a25_A 100 LSVEIWDWDLTSRNDFMGSLSFGISELQKAG----VDGWFKLLS 139 (149)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEHHHHTTCC----EEEEEECBC
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhCcCc----cCCeEEccC
Confidence 9999999999888999999999999997432 456999975
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=131.56 Aligned_cols=109 Identities=16% Similarity=0.312 Sum_probs=85.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ . .+.+||||++.+.+ ++ ....++||++++ ++.||+|||+|.|. +....+ . ..
T Consensus 31 L~V~v~~a~~L~~~d--~-~g~~dpyv~v~~~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~-~--~~ 98 (142)
T 2chd_A 31 LQCTIIRAKGLKPMD--S-NGLADPYVKLHLLP----GA-SKSNKLRTKTLR-NTRNPVWNETLQYHGITEEDM-Q--RK 98 (142)
T ss_dssp EEEEEEEEESCCCCC--T-TSCCCEEEEEEEES----CC-SGGGEEECCCCC-SCSSCEEEEEEEEESCCHHHH-H--HC
T ss_pred EEEEEEEecCCCCCC--C-CCCCCCEEEEEEEc----CC-CCcceeeCCcCC-CCCCCcCcCEEEEcccCHHHc-c--CC
Confidence 689999999999987 3 35899999998732 11 124789999997 58999999999998 654221 1 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|||++.+++|++||.+.|+|.++... .....|++|..
T Consensus 99 ~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L~~ 140 (142)
T 2chd_A 99 TLRISVCDEDKFGHNEFIGETRFSLKKLKAN---QRKNFNICLER 140 (142)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEGGGCCTT---CCEEEEEECBC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEHHHcCCC---CccEEEEeccc
Confidence 8999999999988899999999999999642 34556777653
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=133.03 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=84.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+ +||||++.+.. ++ ....+++|++++ ++.||+|||+|.|.+....+ . ...
T Consensus 26 L~v~v~~a~~L~~~d--~-~g-~dpyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~--~~~ 92 (142)
T 2dmg_A 26 LIVVVHACRNLIAFS--E-DG-SDPYVRMYLLP----DK-RRSGRRKTHVSK-KTLNPVFDQSFDFSVSLPEV-Q--RRT 92 (142)
T ss_dssp EEEEEEEEECCCCSS--T-TC-CCEEEEEEEES----CC-CSSSCEECCCCC-SCSSCEEEEEEEECCCHHHH-H--HCE
T ss_pred EEEEEEEeECCCCCC--C-CC-CCeeEEEEEEc----CC-CCCCcccCCccC-CCCCCCcCceEEEEecHHHh-C--cCE
Confidence 689999999999987 3 35 99999998742 11 123688999997 58999999999999865222 1 148
Q ss_pred EEEEEEEccCCCC--CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLYTKTLISG--QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~d~~~~~~--d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.|+|||++.++. |++||.+.|+|.++.... ....||+|...++
T Consensus 93 L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 93 LDVAVKNSGGFLSKDKGLLGKVLVALASEELAK---GWTQWYDLTEDSG 138 (142)
T ss_dssp EEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT---CBCCBCCCBCSCS
T ss_pred EEEEEEECCCccccCCcEEEEEEEecccccccc---cccceeeccCCCC
Confidence 9999999998753 579999999999985422 2345899886543
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=128.67 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=77.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+.+ .+....+++|++++ ++.||.|||+|.|.+....+ . ...
T Consensus 18 L~v~v~~a~~L~~~d--~-~g~~dpyv~v~~~~-----~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l-~--~~~ 85 (138)
T 3n5a_A 18 IIVNIIKARNLKAMD--I-GGTSDPYVKVWLMY-----KDKRVEKKKTVTKK-RNLNPIFNESFAFDIPTEKL-R--ETT 85 (138)
T ss_dssp EEEEEEEEESCCCCB--T-TTBCCEEEEEEEEE-----TTEEEEEEECCCCS-SCSSCEEEEEEEEECCGGGG-G--GEE
T ss_pred EEEEEEEeeCCCCcC--C-CCCcCeEEEEEEEe-----CCCccceEeCcccc-CCCCCcCcceEEEECChhhc-C--ceE
Confidence 689999999999987 3 35899999998732 11123678999987 47999999999999877332 1 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|+|++.+++|++||.+.|+|.++.
T Consensus 86 l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 86 IIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred EEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 9999999999889999999999999763
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-19 Score=135.64 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=84.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCC-------CCccEEEeEeecCCCCCCeeceEEEEE-cccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGD-------KHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNA 72 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d-------~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~ 72 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.+. .+. ....++||++++ ++.||+|||+|.|. +....
T Consensus 20 L~V~v~~a~~L~~~d--~~-g~~Dpyv~v~~~~~---~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~ 92 (142)
T 1rh8_A 20 LIIHILQARNLVPRD--NN-GYSDPFVKVYLLPG---RGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQ 92 (142)
T ss_dssp EEEEEEEEESCCCCS--SS-SCSCCEEEEEETTS---SCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHH
T ss_pred EEEEEEEecCCCCCC--CC-CCCCceEEEEEecC---CCcccccccccccceeeccccC-CCCCCCCCCEEEECCcCHHH
Confidence 689999999999987 33 58999999987321 000 001357899887 48999999999997 65422
Q ss_pred cccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 73 FFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 73 l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
+ .. ..|.|+|||++.+++|++||.+.|+|.++.... ....||+|...+
T Consensus 93 l-~~--~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L~~~~ 140 (142)
T 1rh8_A 93 L-MK--KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD---NTPRWYPLKEQT 140 (142)
T ss_dssp H-TT--CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT---TCCEEEECBCCC
T ss_pred c-cC--CEEEEEEEECCCCCCCceEEEEEEeccccccCC---CCCeEEECCccC
Confidence 1 12 489999999999888999999999999985421 234699997543
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=132.17 Aligned_cols=111 Identities=16% Similarity=0.268 Sum_probs=86.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . +.+||||++.+.+. +. ...+++|++++ ++.||.|||+|.|.+....+ . ..
T Consensus 29 L~V~v~~a~~L~~~d---~-g~~Dpyv~v~l~~~----~~-~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~-~---~~ 94 (153)
T 3fbk_A 29 LLLHIIEGKGLISKQ---P-GTCDPYVKISLIPE----DS-RLRHQKTQTVP-DCRDPAFHEHFFFPVQEEDD-Q---KR 94 (153)
T ss_dssp EEEEEEEEESCCCCS---S-SCCCEEEEEEEESC----SC-CTTCEECCCCT-TCSSCEEEEEEEEECCGGGT-T---SE
T ss_pred EEEEEEEeeCCCCCC---C-CCCCEEEEEEEEcC----CC-CccEEeccccC-CCCCCccccEEEEecccHHh-C---CE
Confidence 689999999999987 2 58999999987431 11 24689999987 58999999999999865222 1 35
Q ss_pred EEEEEEEccCCCC-CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLYTKTLISG-QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~d~~~~~~-d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.|+|||++.+++ |++||.+.|+|.+|.... .....||+|..+..
T Consensus 95 L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~--~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 95 LLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD--KEISGWYYLLGEHL 140 (153)
T ss_dssp EEEEEEECCSSGGGCEEEEEEEEEHHHHTC----CCEEEEEECBCTTG
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC--CccccEEECCChhh
Confidence 9999999998776 899999999999996422 23456999987543
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=156.39 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=99.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+.. ..+..||||+|.+++.. .| .+++||++++++|.||+|||+|.|.+.... .+.
T Consensus 499 L~V~Vi~A~~L~~~d~~-~~~~~DPYV~V~l~g~~---~d--~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e-----l~~ 567 (624)
T 1djx_A 499 LRVRIISGQQLPKVNKN-KNSIVDPKVIVEIHGVG---RD--TGSRQTAVITNNGFNPRWDMEFEFEVTVPD-----LAL 567 (624)
T ss_dssp EEEEEEEEESCCCCSSC-SSSCCCEEEEEEEESSG---GG--CEEEECCCCTTCSSSCEEEEEEEEEESCGG-----GCE
T ss_pred EEEEEEEcCCCCccccc-ccCCCCcEEEEEEecCC---CC--cceeecccccCCCCCCccCceEEEEEecCC-----CCE
Confidence 68999999999988721 13589999999987631 12 368899999987899999999999987632 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~ 141 (192)
|+|+|+|++.+++|++||++.|||..|... ..+++|.+..|.. ..+.|.+.+.|.
T Consensus 568 L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 568 VRFMVEDYDSSSKNDFIGQSTIPWNSLKQG------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGBCCE------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEEEEcCCCCCCceeEEEEEEHHHcCCC------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 999999999988999999999999999631 2489999888743 357888888775
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=131.48 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=85.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.. ++ ....+++|++++ ++.||.|||+|.|.+....+ + ...
T Consensus 27 L~V~v~~a~~L~~~d--~~-g~~dpyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~--~~~ 94 (159)
T 1tjx_A 27 LTVVILEAKNLKKMD--VG-GLSDPYVKIHLMQ----NG-KRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQI-Q--KVQ 94 (159)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEEEE----TT-EEEEEEECCCCC-SCSSCEEEEEEEEECCGGGG-G--GCE
T ss_pred EEEEEEEeeCCCCcc--CC-CCCCeEEEEEEEe----CC-ceeceeeCceec-CCCCCcccceEEEEcCHHHh-C--CcE
Confidence 689999999999987 33 5899999998632 11 113578999987 58999999999999876332 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc----------cCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI----------GFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l----------~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.+++|++||.+.|+|..+ ...+. .....||+|..
T Consensus 95 l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~-~~~~~W~~L~~ 147 (159)
T 1tjx_A 95 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR-RPIAQWHTLQV 147 (159)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTT-CCEEEEEECBC
T ss_pred EEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCC-CeeeeEEECcC
Confidence 999999999988899999999999964 22222 33457999874
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=128.93 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=82.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++ .+ . .+.+||||+|.+.. .+ +..+++|++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 28 L~V~v~~a~~---~d--~-~g~sDPyv~v~l~~-----~~-~~~~~kT~v~~-~tlnP~wnE~f~f~v~~~~l-~~--~~ 91 (138)
T 1wfm_A 28 LFVTRLEAVT---SN--H-DGGCDCYVQGSVAN-----RT-GSVEAQTALKK-RQLHTTWEEGLVLPLAEEEL-PT--AT 91 (138)
T ss_dssp EEEEEEEEEC---CC--C-SSCCCEEEEEEEEE-----TT-EEEEEECCCCC-CCSSEECSSCEEEECCTTSS-TT--CE
T ss_pred EEEEEEEEEc---CC--C-CCCcceEEEEEEEc-----CC-CcccEecccCc-CCCCCcCCceEEEEecHHHc-CC--CE
Confidence 6899999993 44 2 35899999998621 11 23578999987 58999999999999876332 22 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|||++.+++|++||.+.|+|.++... .....||+|..+
T Consensus 92 L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~---~~~~~W~~L~~~ 133 (138)
T 1wfm_A 92 LTLTLRTCDRFSRHSVAGELRLGLDGTSVP---LGAAQWGELKTS 133 (138)
T ss_dssp EEEEEEECCSSCTTSCSEEEEEESSSSSSC---TTCCEEEECCCC
T ss_pred EEEEEEECCCCCCCcEEEEEEEEcccccCc---ccccceeeCcCC
Confidence 999999999988999999999999999532 234569999764
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-18 Score=134.33 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=84.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ ...+..||||+|.+.. ++ ....++||++++ ++.||+|||+|.|.+... ...
T Consensus 32 L~V~v~~a~~L~~~d--~~~g~~DPyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~------~~~ 97 (171)
T 2q3x_A 32 LEVEVIRARSLTQKP--GSKSTPAPYVKVYLLE----NG-ACIAKKKTRIAR-KTLDPLYQQSLVFDESPQ------GKV 97 (171)
T ss_dssp EEEEEEEEESCCCCC-----CCCEEEEEEEEEE----TT-EEEEEEECCCCC-SCSSCEEEEEEECSSCCT------TEE
T ss_pred EEEEEEEeeCCCCCC--cCCCCCCceEEEEEEC----CC-ccccceeCccCC-CCCCCCCCcEEEEEecCC------CCE
Confidence 689999999999987 2235899999998632 11 012478999987 589999999999998651 258
Q ss_pred EEEEEE-EccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLY-TKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~-d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|| |++.+++|++||.+.|+|.++... .....||+|...
T Consensus 98 L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~---~~~~~W~~L~~~ 140 (171)
T 2q3x_A 98 LQVIVWGDYGRMDHKCFMGVAQILLEELDLS---SMVIGWYKLFPP 140 (171)
T ss_dssp EEEEEEEECSTTCSSEEEEEEEECGGGSCTT---SCEEEEEECBCG
T ss_pred EEEEEEEcCCCCCCCCEEEEEEEEHHHcccC---CCcceeEECCCc
Confidence 999999 999988899999999999999632 234579999754
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=131.08 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=83.1
Q ss_pred CEEEEEEeeCCCCC-CCC----CcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCcccc
Q 029535 1 MEITILSAQGLKNT-SFT----LFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~-~~~----~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~ 75 (192)
|.|+|++|++|+.. +.. .+ +.+||||+|.+. ++. .++++|++++ ++.||+|||+|.|.+....+ .
T Consensus 28 L~V~v~~a~~L~~~~d~~g~~~~~-~~~dpyv~v~l~------~~~-~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~ 97 (147)
T 2enp_A 28 LTVRVIEARDLPPPISHDGSRQDM-AHSNPYVKICLL------PDQ-KNSKQTGVKR-KTQKPVFEERYTFEIPFLEA-Q 97 (147)
T ss_dssp EEEEEEEEECCCCSCSSCCSSCTT-CCCCCEEEEEEE------TCC-SSCEECCCCC-SCSSCCCCBCCEECCCHHHH-H
T ss_pred EEEEEEEEeCCCCccccccccccC-CCCCcEEEEEEE------eCC-CcceEeeccc-CCCCCeEeeeEEEEeChHHh-c
Confidence 68999999999984 310 12 479999999873 221 3678999987 58999999999999875222 1
Q ss_pred CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 76 NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 76 ~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
...|.|+|||++.+++|++||.+.|+|.++..... ...||.|..
T Consensus 98 --~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~---~~~w~~L~~ 141 (147)
T 2enp_A 98 --RRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKG---GHWWKALIP 141 (147)
T ss_dssp --HSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTC---CCEEECCBC
T ss_pred --cCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCC---ccEEEEeec
Confidence 14899999999998889999999999999964322 245788763
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=130.38 Aligned_cols=96 Identities=16% Similarity=0.309 Sum_probs=77.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.+ ++ ....+++|++++ ++.||+|||+|.|.+....+ . ...
T Consensus 39 L~V~v~~a~~L~~~d--~~-g~~DPyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~--~~~ 106 (166)
T 2cm5_A 39 LIVGIIRCVHLAAMD--AN-GYSDPFVKLWLKP----DM-GKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSDL-A--KKS 106 (166)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEEET----C----CCEEECCCCC-SCSSCEEEEEEEEECCGGGG-G--GCE
T ss_pred EEEEEEEeECCCCcc--CC-CCCCcEEEEEEEC----CC-CccceEeCCccc-CCCCCcccceEEEEcchHhc-C--CCE
Confidence 689999999999987 33 5899999998732 11 114689999997 58999999999999976322 1 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|||++.+++|++||.+.|+|.++.
T Consensus 107 L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 107 LDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred EEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 9999999999888999999999999863
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-18 Score=129.33 Aligned_cols=94 Identities=15% Similarity=0.288 Sum_probs=72.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +.+||||+|.+.. ++ ....++||+++++ +.||+|||+|.|.+....+ +. ..
T Consensus 32 L~v~v~~a~~L~~~d--~~-g~~dpyv~v~~~~----~~-~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l-~~--~~ 99 (153)
T 1w15_A 32 LTVVVLKARHLPKSD--VS-GLSDPYVKVNLYH----AK-KRISKKKTHVKKC-TPNAVFNELFVFDIPCESL-EE--IS 99 (153)
T ss_dssp EEEEEEEEESCC---------CCCEEEEEEEEE----TT-EEEEEEECCCCCS-CSSEEEEEEEEEECCSSSS-TT--EE
T ss_pred EEEEEEEeECCCCcC--CC-CCCCeEEEEEEEe----CC-eEeceEecCcccC-CCCCeecceEEEECCHHHh-Cc--eE
Confidence 689999999999987 33 5899999998732 11 1123779999974 8999999999999977332 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|||++.+++|++||.+.|+|.+
T Consensus 100 l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 100 VEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred EEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 99999999998889999999999988
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=137.90 Aligned_cols=127 Identities=19% Similarity=0.287 Sum_probs=95.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+. ++ +.++++|++++ ++.||.|||+|.|.+....+ +. ..
T Consensus 22 L~v~v~~a~~L~~~d--~-~g~~dPyv~v~l~------~~-~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~~--~~ 87 (296)
T 1dqv_A 22 LVVRILQALDLPAKD--S-NGFSDPYVKIYLL------PD-RKKKFQTKVHR-KTLNPIFNETFQFSVPLAEL-AQ--RK 87 (296)
T ss_dssp EEEEEEEEECCCCCS--T-TSCCCEEEEEECT------TS-TTSCEECCCCC-SCSSCEEEEEEEEECCGGGG-SS--CC
T ss_pred EEEEEEEeECCCCcC--C-CCCcCeEEEEEEE------cC-CCeeEeCCccC-CCCCCcEeeEEEEEecHHHh-cC--CE
Confidence 689999999999987 3 3589999998752 22 23688999987 58999999999999875332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEe-CccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIP-VNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~Ip-L~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~~ 143 (192)
|.|+|||++.+++|++||++.|+ +.++..... ....|++|....+ ....|.|++++.+.+.
T Consensus 88 L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~--~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 88 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP--DRPLWRDILEGGSEKADLGELNFSLCYLPT 150 (296)
T ss_dssp CEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS--SCCCCEECBCCSSCCSCCCEEEEEEEEETT
T ss_pred EEEEEEEcCCCCCCceEEEEEeccccccccCCc--cceeeeccccccccccccceEEEEEEeccc
Confidence 99999999998899999999996 555543221 1234788875433 2457999999888763
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=143.35 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=92.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+ + .++++|+++++ +.||.|||+|.|.+... .. ..
T Consensus 389 l~v~v~~a~~L~~~d--~~-~~sdpyv~v~~------~----~~~~~T~~~~~-t~nP~w~e~f~f~~~~~---~~--~~ 449 (510)
T 3jzy_A 389 LMVHVIEATELKACK--PN-GKSNPYCEISM------G----SQSYTTRTIQD-TLNPKWNFNCQFFIKDL---YQ--DV 449 (510)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEE------T----TEEEECCCCSS-CSSCEEEEEEEEEESCT---TT--CE
T ss_pred EEEEeceeecCCCCC--CC-CCCCeEEEEEE------C----CeeccCCccCC-CCCCccCceEEEEecCC---CC--CE
Confidence 579999999999987 33 58999999976 2 25899999874 79999999999998662 12 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC-CcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG-GSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~-~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+++|++||.+.++|.++..... ......|++|. + +..|.|++.+.+.
T Consensus 450 l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~---~-~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH---E-VPTGEVWVRFDLQ 507 (510)
T ss_dssp EEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB---S-SSSCEEEEEEEEE
T ss_pred EEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCC---C-CCCceEEEEEEEE
Confidence 99999999998889999999999999953211 01133578764 3 5678888887753
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=145.32 Aligned_cols=120 Identities=19% Similarity=0.339 Sum_probs=95.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeece-EEEEE-cccCccccCce
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGD-KFYVP-TDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE-~f~f~-v~~~~l~~~~~ 78 (192)
|.|+||+|++|+.. ..||||+|.++++ ..|. ..++||+++.++|.||+||| +|.|. +...+ .
T Consensus 727 L~V~Visaq~L~~~-------~~DPYV~V~l~g~---p~D~-~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe-----l 790 (885)
T 3ohm_B 727 LRVKVISGQFLSDR-------KVGIYVEVDMFGL---PVDT-RRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT-----L 790 (885)
T ss_dssp EEEEEEEEESCCSS-------CCCEEEEEEEESS---TTTC-BCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG-----G
T ss_pred EEEEEEEeccCccc-------CCCcEEEEEEeCC---Cccc-ccceeeEEeeCCCcCCeeccceeEEeeEEcCC-----c
Confidence 68999999999842 5799999999764 1221 34679999988899999999 79998 65422 2
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEeecCCC
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLEPVVPD 146 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~~~~~~ 146 (192)
+.|+|+|+|++ |++||++.|||..|... ...++|++..|.. ..|.|.+.+.+.+.+++
T Consensus 791 a~Lrf~V~D~d----ddfiG~~~lpL~~L~~G------yR~vpL~~~~g~~l~~atLfv~i~~~~~~~~ 849 (885)
T 3ohm_B 791 ASLRIAAFEEG----GKFVGHRILPVSAIRSG------YHYVCLRNEANQPLCLPALLIYTEASDYIPD 849 (885)
T ss_dssp CEEEEEEEETT----TEEEEEEEEETTTCCCE------EEEEEEECTTSCEEEEEEEEEEEEEEECCCG
T ss_pred CEEEEEEEcCC----ccEEeeEEEEHHHcCCC------ceEEEecCCCCCccCceEEEEEEEEEecCCc
Confidence 58999999985 78999999999999631 2368999888843 57899999999987754
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=143.44 Aligned_cols=122 Identities=21% Similarity=0.315 Sum_probs=94.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceE-EEEE-cccCccccCce
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDK-FYVP-TDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~-f~f~-v~~~~l~~~~~ 78 (192)
|.|+|++|++|++. ..||||+|++++.. .|....++||++++++|.||+|||+ |.|. +...+ .
T Consensus 652 L~V~Visaq~L~~~-------~~DPYV~V~l~g~p---~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe-----l 716 (816)
T 3qr0_A 652 IEIKIISAQFLSDK-------QISSYVEVEMYGLP---TDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD-----L 716 (816)
T ss_dssp EEEEEEEEECCCSS-------CCCEEEEEEEESSG---GGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG-----G
T ss_pred EEEEEEEcccCCCC-------CCCCeEEEEEeCCC---cccccceeeeEEecCCCCCCeEcCceeEEccccCCC-----c
Confidence 68999999999842 57999999998642 1211257899999888999999998 9998 75522 3
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcc-cEEEEEEEEEeecCCCC
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRG-HGVVNLAIKLEPVVPDT 147 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~-~G~l~l~v~f~~~~~~~ 147 (192)
+.|+|+|+|++ |++||++.|||..|... ....+|++..|... -+.|-+.+.+...+++.
T Consensus 717 a~Lrf~V~D~d----ddfiG~~~ipL~~L~~G------yR~vpL~~~~g~~~~~atLfv~i~~~~~~~~~ 776 (816)
T 3qr0_A 717 AVVRIIVSEEN----GKFIGHRVMPLDGIKPG------YRHVPLRNESNRPLGLASVFAHIVAKDYVSDA 776 (816)
T ss_dssp CEEEEEEEETT----SCEEEEEEEESTTCCCE------EEEEEEECTTSCEEEEEEEEEEEEEEECCC--
T ss_pred cEEEEEEEecC----CCeeeEEEEEHHHcCCc------ceEEEEeCCCCCCCCceEEEEEEEEEecCchh
Confidence 68999999974 78999999999999631 23689999888443 37888888888877654
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=126.54 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=85.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.. ++. ...+.+|++++ ++.||.|||+|.|.+....+ + ...
T Consensus 152 l~v~v~~a~~L~~~d--~~-~~~dpyv~v~~~~----~~~-~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~--~~~ 219 (284)
T 2r83_A 152 LTVVILEAKNLKKMD--VG-GLSDPYVKIHLMQ----NGK-RLKKKKTTIKK-NTLNPYYNESFSFEVPFEQI-Q--KVQ 219 (284)
T ss_dssp EEEEEEEEESCCCCS--TT-SCCCEEEEEEEEE----TTE-EEEEEECCCCC-SCSSCEEEEEEEEECCTTTG-G--GEE
T ss_pred eEEEEEEeECCCCcC--CC-CCcCeEEEEEEEe----CCc-Eeeeeccceec-CCCCCEEceeEEEeCCHHHh-C--ceE
Confidence 579999999999987 33 5899999998632 111 13578999886 58999999999999976332 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc----------CCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG----------FPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~----------~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.+++|++||.+.|+|..+. ..+ +.....||+|..
T Consensus 220 l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~-~~~~~~W~~L~~ 272 (284)
T 2r83_A 220 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQV 272 (284)
T ss_dssp EEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TSCEEEEEECBC
T ss_pred EEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCC-CCchheeeecCC
Confidence 9999999999889999999999998742 122 233457999874
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-15 Score=136.22 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=88.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+. | .+ +++||||+|.+ ++ +++||+++++ +.||+|||+|.|.+.... . ...
T Consensus 396 L~V~V~~A~~L~~-D--~~-g~sDPYV~v~l------~~----~~~kTkvik~-tlNP~Wne~f~f~~~~~~--~--~~~ 456 (540)
T 3nsj_A 396 LVVSNFRAEHLWG-D--YT-TATDAYLKVFF------GG----QEFRTGVVWN-NNNPRWTDKMDFENVLLS--T--GGP 456 (540)
T ss_dssp EEEEEEEEESCCC-S--SC-SCCCEEEEEEE------TT----EEEECCCBCS-CSSCBCCCCEEEEEEETT--T--CCC
T ss_pred EEEEEEEccCCCc-c--cC-CCcCeEEEEEE------CC----EeeeeeeecC-CCCCCCCeEEEEEEecCC--C--CCE
Confidence 6899999999998 7 45 48999999976 32 5799999975 799999999999854311 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~ 145 (192)
|.|+|||++.++.|++||.+.++|.. +. ...|++| .+|.|++++.+.-...
T Consensus 457 L~~~V~D~D~~~~dD~LG~~~~~L~~------g~-~~~~~~l-------~~G~l~~~~~~~c~p~ 507 (540)
T 3nsj_A 457 LRVQVWDADYGWDDDLLGSCDRSPHS------GF-HEVTCEL-------NHGRVKFSYHAKCLPH 507 (540)
T ss_dssp EEEEEEECCSSSCCEEEEEEEECCCS------EE-EEEEEEC-------SSSEEEEEEEEEECTT
T ss_pred EEEEEEECCCCCCCCEEEEEEEEeeC------Cc-EEEEEEc-------CCeEEEEEEEEEECCC
Confidence 99999999998889999999999872 22 3456664 2588999999887554
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=138.37 Aligned_cols=115 Identities=21% Similarity=0.390 Sum_probs=88.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeE-eecCCCCCCeece-EEEE-EcccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTR-VDDHGGVNPTWGD-KFYV-PTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~-v~~~~g~nP~WNE-~f~f-~v~~~~l~~~~ 77 (192)
|.|+|++|++|++ +..||||+|.++|. ..| ..+++||+ +++++|.||+||| +|.| .+...+
T Consensus 680 L~V~Visa~~L~~-------~~~DPYV~V~l~g~---p~d-~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e----- 743 (799)
T 2zkm_X 680 LSITVISGQFLSE-------RSVRTYVEVELFGL---PGD-PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE----- 743 (799)
T ss_dssp EEEEEEEEESCCS-------SCCCEEEEEEEECC---TTS-CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-----
T ss_pred EEEEEEeccccCc-------cCCCcEEEEEEEec---CCC-cccceeecccccCCCCCCeeecceEEEEEEccCC-----
Confidence 6899999999985 25799999999763 122 13478999 8888899999999 7999 776522
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEe
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLE 141 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~ 141 (192)
.+.|+|+|+|++ +++||.+.|||..|.. + ..+++|.+..|.. ..+.|.+.+.+.
T Consensus 744 l~~Lr~~V~D~d----~d~iG~~~ipl~~L~~---G---~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 744 LASLRVAVMEEG----NKFLGHRIIPINALNS---G---YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp GCEEEEEEEETT----TEEEEEEEEEGGGBCC---E---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred ccEEEEEEEEeC----CCccceEeeehhhcCC---C---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 258999999985 7899999999999963 1 2378999887743 345777766654
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-16 Score=140.85 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=19.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCC--CCCCeeceEEEEEcccCccccCce
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHG--GVNPTWGDKFYVPTDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~--g~nP~WNE~f~f~v~~~~l~~~~~ 78 (192)
|+|+|++|++|+.++ ||||++.+ ++ ..+.||+++++. |.||+|||+|.|.+.+ . .
T Consensus 13 L~V~VieAk~L~~~d--------dpYv~v~l------~~---~~~~kT~v~~kt~~glnP~WnE~F~f~~~~-~-----~ 69 (483)
T 3bxj_A 13 LKLWIIEARELPPKK--------RYYCELCL------DD---MLYARTTSKPRSASGDTVFWGEHFEFNNLP-A-----V 69 (483)
T ss_dssp C--------------------------------------------------------------CCEECC-----------
T ss_pred EEEEEEEcCCcCCCC--------CCeEEEEE------CC---eEEeeeeEEeCCCCCCCCccccEEEEecCC-C-----c
Confidence 789999999998653 89998865 32 245789988642 4999999999998654 2 2
Q ss_pred eEEEEEEEEc-c---CCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-----------------------Cccc
Q 029535 79 ACIYLQLYTK-T---LISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-----------------------SRGH 131 (192)
Q Consensus 79 ~~L~veV~d~-~---~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-----------------------~k~~ 131 (192)
..|.|+|||+ + .+++|++||.+.||+.++... .....||+|..+++ .+..
T Consensus 70 ~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 146 (483)
T 3bxj_A 70 RALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGR---HFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGC 146 (483)
T ss_dssp ----------------------------------------CCEECC----------------------------------
T ss_pred cEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCC---CCCCeEEECCCCCCccccccccccccccccccccccCCCCC
Confidence 5799999995 3 357899999999999999642 23456899965432 1346
Q ss_pred EEEEEEEEEeecCCCC
Q 029535 132 GVVNLAIKLEPVVPDT 147 (192)
Q Consensus 132 G~l~l~v~f~~~~~~~ 147 (192)
|.|+|.++|.+..-.|
T Consensus 147 G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 147 PAVRLKARYQTMSILP 162 (483)
T ss_dssp ----CEEEEEECCBCC
T ss_pred ceEEEEEEeeeeeecc
Confidence 9999999998865333
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-15 Score=126.48 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=85.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ .. +..||||++.+.. ++. ...++||++++ ++.||.|||+|.|.+....+ +. ..
T Consensus 154 l~v~v~~a~~L~~~d--~~-g~~Dpyv~v~l~~----~~~-~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l-~~--~~ 221 (296)
T 1dqv_A 154 LTVTIIKASNLKAMD--LT-GFSDPYVKASLIS----EGR-RLKKRKTSIKK-NTLNPTYNEALVFDVAPESV-EN--VG 221 (296)
T ss_dssp EEEEEEEEESCCCCS--SS-SCCCEEEEECCCT----TCC-TTSCEECCCCC-SCSSCEEEECCCCCCCSGGG-GS--CC
T ss_pred eEEEEEEeecCCccC--CC-CCCCcEEEEEEEe----CCc-Cccceecceec-CCCCCeECceEEEEcCHHHc-cC--cE
Confidence 579999999999988 33 5789999997531 121 24678999887 58999999999999877332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC----------CCCCcceeEEEEEEeCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF----------PPGGSVRNLSYRLRARD 126 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~----------~~~~~~~~~~y~L~~~~ 126 (192)
|.|+|||++.+++|++||.+.|++.++.. ...+.....||+|....
T Consensus 222 L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~ 277 (296)
T 1dqv_A 222 LSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEK 277 (296)
T ss_dssp CCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred EEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCcc
Confidence 99999999999899999999999997632 01122344577776543
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=137.11 Aligned_cols=103 Identities=17% Similarity=0.310 Sum_probs=82.7
Q ss_pred CEEEEEEeeCCCC---CCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKN---TSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~---~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|+|+|++|++|+. ++ .+ +.+||||+|.+. ++. ..++||++++ ++.||+|||+|.|.+... +
T Consensus 20 L~V~Vi~A~nL~~~~~~D--~~-g~sDPYV~V~l~------~~~-~~k~kTkvik-~tlNPvWNEtF~F~v~~~---~-- 83 (749)
T 1cjy_A 20 FTVVVLRATKVTKGAFGD--ML-DTPDPYVELFIS------TTP-DSRKRTRHFN-NDINPVWNETFEFILDPN---Q-- 83 (749)
T ss_dssp EEEEEEEEECCCSCHHHH--HH-CCCCEEEEEECT------TST-TCCEECCCCT-TCSSCEEEEEEEEEECTT---S--
T ss_pred EEEEEEEEECCCCccccC--CC-CCcCeEEEEEEe------cCC-CCeEecceEc-CCCCCeeeeEEEEEecCC---C--
Confidence 6899999999998 66 33 589999999762 221 3688999997 589999999999999762 1
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
...|.|+|||++.++ |++||++.|+|.+|... .....||+|.
T Consensus 84 ~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g---~~~~~w~~L~ 125 (749)
T 1cjy_A 84 ENVLEITLMDANYVM-DETLGTATFTVSSMKVG---EKKEVPFIFN 125 (749)
T ss_dssp CCBCEEEEEECCSSS-CEEEEEECCBSTTSCTT---CCCCEEEEET
T ss_pred CCEEEEEEEECCCCC-CceeEEEEEEHHHcCCC---CceEEEEecC
Confidence 247999999999987 99999999999999532 2234689883
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-13 Score=124.64 Aligned_cols=108 Identities=13% Similarity=0.237 Sum_probs=85.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ .+ +.+||||++.+.+. +. ...+.+|+++++ +.||.|||+|.|.+.... . ...
T Consensus 174 L~V~v~~a~~L~~~d--~~-g~sDPyvkv~l~p~----~~-~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~--~--~~~ 240 (674)
T 3pfq_A 174 LIVVVRDAKNLVPMD--PN-GLSDPYVKLKLIPD----PK-SESKQKTKTIKS-SLNPEWNETFRFQLKESD--K--DRR 240 (674)
T ss_dssp EEEEEEEEESCCCCS--TT-SSCCEEEEEEEESC----SS-CCSCEECCCCSS-CSSCEEEEEEEEECCSTT--T--TCE
T ss_pred eeeeeecccccCCCC--cc-cccCcccccccccC----cc-cccccccccccc-ccCCCccceeeeecccCC--c--cce
Confidence 579999999999998 33 58999999987431 11 246889999975 799999999999987632 1 146
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|||++.+++|++||.+.++|.++.... ...||.|...
T Consensus 241 L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~----~~~w~~Lls~ 281 (674)
T 3pfq_A 241 LSVEIWDWDLTSRNDFMGSLSFGISELQKAG----VDGWFKLLSQ 281 (674)
T ss_dssp EEEEEEECCSSSCCEECCBCCCBTTHHHHCC----EEEEEECBCT
T ss_pred eeeEEeecccccccccccccccchhhhccCC----cccceeeccc
Confidence 9999999999999999999999999996422 2347887754
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=77.54 Aligned_cols=120 Identities=8% Similarity=0.119 Sum_probs=79.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEe-EeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRT-RVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT-~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|+|...++.-.+-... -+...||||.|.+ +......+.+| ...+ .+..|.|||.|.-.+.+ + .
T Consensus 12 lRi~l~~~~~~~~~~~--~~~~lDPY~aV~V------dE~~~te~gqtl~~Kk-kT~~P~Wne~Fd~~V~~-G------r 75 (138)
T 2enj_A 12 LRIGLSNFDCGSCQSC--QGEAVNPYCAVLV------KEYVESENGQMYIQKK-PTMYPPWDSTFDAHINK-G------R 75 (138)
T ss_dssp EEEEEEEEECCCCCCS--CCCCCCCEEEEEE------EEEEEETTEEEEEEEE-EEECCCSSSEEEECCCS-S------C
T ss_pred eEEEeeccccCCCCCc--ccccCCceEEEEe------eeeeeccCceeecccC-CCCCccccceEeeeEEC-C------e
Confidence 4566666655443320 0125899999876 21000012455 3332 37799999999999877 2 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCC---CCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCCC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFP---PGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPDT 147 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~---~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~~ 147 (192)
.|.|.|++... ++|+.++|++.+|+.. .+ .....|..| +|+|.|++.+++.-...+|
T Consensus 76 ~l~i~Vfh~a~----~fVAn~tV~~edL~~~ck~~~-g~~e~WvdL------eP~Gkl~v~i~~~~e~~~~ 135 (138)
T 2enj_A 76 VMQIIVKGKNV----DLISETTVELYSLAERCRKNN-GKTEIWLEL------KPQGRMLMNARYFLEMSGP 135 (138)
T ss_dssp EEEEEEECSSC----SCCEEEEEESHHHHHHHHHTT-TCEEEEEEC------BSSCEEEEEEEECCCSSCC
T ss_pred EEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCC-CceEEEEec------ccCcEEEEEEEEEEecccc
Confidence 89999997543 8999999999999743 22 345678877 6789999999987544444
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-08 Score=74.56 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~ 101 (192)
..||||.|.+ +......+.+|-+.+..+..|.|||.|.-.+.+ + ..|.|.|++... ++|+.++
T Consensus 26 ~lDPy~aV~v------dE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-G------r~l~i~Vfh~a~----~fvAn~t 88 (126)
T 1yrk_A 26 ANQPFCAVKM------KEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-G------RVIQIVLMRAAE----EPVSEVT 88 (126)
T ss_dssp SCCCEEEEEE------EEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-T------CEEEEEEEEETT----EEEEEEE
T ss_pred cCCceEEEEe------eeeEEcccceeecccCCCCCcCccceEEeeeeC-C------EEEEEEEEcCCC----CeeeEEE
Confidence 5899999876 210001123553444568999999999999877 2 489999997643 8999999
Q ss_pred EeCccccCC---CCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 102 IPVNDIGFP---PGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 102 IpL~~l~~~---~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|++.+|+.. .+ .....|..| +|+|.|++.+++.
T Consensus 89 V~~edL~~~c~~~~-g~~e~WvdL------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 89 VGVSVLAERCKKNN-GKAEFWLDL------QPQAKVLMSVQYF 124 (126)
T ss_dssp EEHHHHHHHHHTTT-TEEEEEEEC------BSSCEEEEEEEEE
T ss_pred EEHHHHHhhhccCC-CceEEEEec------ccCcEEEEEEEEe
Confidence 999999743 23 345678876 6788999998875
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.026 Score=54.94 Aligned_cols=94 Identities=12% Similarity=0.285 Sum_probs=58.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+++.++...+ ..+-||++++|- |+..-+....|+.+. .+.+|.|||.+.|++.=..+.. .+.
T Consensus 219 f~i~i~~~~~~~~~~------~~~~~V~~~l~~----g~~~l~~~~~T~~~~-~~~~~~Wne~l~f~i~i~dLPr--~a~ 285 (940)
T 2wxf_A 219 FSIELIEGRKVNADE------RMKLVVQAGLFH----GNEMLCKTVSSSEVN-VCSEPVWKQRLEFDISVCDLPR--MAR 285 (940)
T ss_dssp EEEEEEEEECCCC---------CEEEEEEEEEE----TTEESSCCEECCCEE-SCSSCEEEEEEEEEEEGGGCCT--TCE
T ss_pred eEEEEEEecccCCCC------CceEEEEEEEEE----CCEEccCceeccccc-CCCCcccceEEEcccccccCCc--ccE
Confidence 468999999886543 467899998874 321112233444333 3578999999999765433322 368
Q ss_pred EEEEEEEccCC--C----------CCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLI--S----------GQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~--~----------~d~~IG~~~IpL~~l 107 (192)
|.|+||+...- + ...+||++.++|-+.
T Consensus 286 L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 286 LCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEEEEEEEC----------------CEEEEEEEEESBCT
T ss_pred EEEEEEEecCCccCccccccccccccceEEEEeeeEECC
Confidence 99999985321 1 134777777777654
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.053 Score=42.02 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=69.2
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccC--ceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEE
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFAN--RYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYR 121 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~--~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~ 121 (192)
..+.|.+.. |.+|.+|-+-++.+....+..+ ....|.+|+..... ..-+.||.++|+|.+++...+ ... -...
T Consensus 54 Etq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g-~~~~tla~~~I~l~~lLe~~~-~i~-g~~~ 128 (156)
T 2yrb_A 54 ELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYS-TEYETIAACQLKFHEILEKSG-RIF-CTAS 128 (156)
T ss_dssp CCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECS-SCEEEEEEEEECCSHHHHCCS-CEE-EEEE
T ss_pred Eeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeC-CCceEEEEEEEEhHHhhCcCC-ceE-EEEE
Confidence 567899885 7999999998888765433321 12478999988643 234689999999999986543 222 3457
Q ss_pred EEeCCCC-cccEEEEEEEEEeecC
Q 029535 122 LRARDGS-RGHGVVNLAIKLEPVV 144 (192)
Q Consensus 122 L~~~~G~-k~~G~l~l~v~f~~~~ 144 (192)
|...+|+ ..-|.|.+.+++..+.
T Consensus 129 L~g~~g~~~~~G~LeywiRL~~Pi 152 (156)
T 2yrb_A 129 LIGTKGDIPNFGTVEYWFRLRVSG 152 (156)
T ss_dssp ECBSSSCCTTSEEEEEEEEEEECC
T ss_pred EEcCCCCcceEEEEEEEEEEeccc
Confidence 7777664 4689999999988754
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.039 Score=54.46 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=61.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|++|.++.-.. ....+-||++++|- |+..-+...+|+.. .+.+|.|||.+.|++.-..+. +.+.
T Consensus 357 f~v~i~~~~~~n~~~----~~~~~~~V~~~l~h----G~~~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLP--r~ar 424 (1091)
T 3hhm_A 357 LRIKILCATYVNVNI----RDIDKIYVRTGIYH----GGEPLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLP--RAAR 424 (1091)
T ss_dssp EEEEEEEESCCCCCC----SSCCCCCEEEEEES----SSCSSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCC--TTCE
T ss_pred EEEEEEEecCCCCCc----cccceEEEEEEEEE----CCEEccCceecccc--CCCCCCCCeeEEecCccccCC--hhcE
Confidence 478999998886433 12467899999874 43221344455544 357889999999976543332 2379
Q ss_pred EEEEEEEccCCC----CCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLIS----GQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~----~d~~IG~~~IpL~~l 107 (192)
|.|+||+..... ...+||++.++|-|.
T Consensus 425 L~~tl~~~~~~~~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 425 LCLSICSVKGRKGAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp EEEEECCCCCCC-------CCEEEEEESBCT
T ss_pred EEEEEEEecCccCcccccceeEEeeeeeEcc
Confidence 999999864311 234678887777765
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.099 Score=42.65 Aligned_cols=60 Identities=7% Similarity=0.133 Sum_probs=43.6
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC----CCCeeeEEEEEeCcc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI----SGQTLLGWCQIPVND 106 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~----~~d~~IG~~~IpL~~ 106 (192)
...++|.|.- ...+|.|+|++++.++.. +..+ ..|.|++++...- ..+.++|.+.+||-+
T Consensus 76 ~se~~S~V~Y-Hnk~P~w~EtIKi~LP~~-~~~~--~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 76 ISEYKSVIYY-QVKQPRWFETVKVAIPIE-DVNR--SHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp BSCEECCCCT-TCSSCCCCEEEEEEECTT-SSTT--EEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred ceeEEEEEEE-cCCCCCceEeEEEeeChh-hcCC--eEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 4667888775 478999999999999883 3333 6899999864321 123588999999764
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.045 Score=54.07 Aligned_cols=75 Identities=12% Similarity=0.271 Sum_probs=47.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|+++.++...+ ..+-||++++|- |+..-+....|+-+. .+.+|.|||.+.|++.=..+.. .+.
T Consensus 355 f~i~i~~~~~~~~~~------~~~~~V~~~l~~----g~~~L~~~~~T~~~~-~~~~~~Wnewl~f~i~~~dLPr--~a~ 421 (1092)
T 2y3a_A 355 FQITLVKGNKLNTEE------TVKVHVRAGLFH----GTELLCKTVVSSEIS-GKNDHIWNEQLEFDINICDLPR--MAR 421 (1092)
T ss_dssp EEEEECCCCCCCCCS------SCCCCCBCCEEE----TTEESSCCCBCCCCC-SSSCCCCCEEEEEEEESSSCCT--TCE
T ss_pred EEEEEEEeccCCCCC------CceEEEEEEEEE----CCEEccCceeccccc-CCCCCccceeEEeCCccccCCh--hcE
Confidence 468888888876432 457788877764 221101223344332 3678999999999765533322 369
Q ss_pred EEEEEEEc
Q 029535 81 IYLQLYTK 88 (192)
Q Consensus 81 L~veV~d~ 88 (192)
|.|+||+.
T Consensus 422 L~~ti~~~ 429 (1092)
T 2y3a_A 422 LCFAVYAV 429 (1092)
T ss_dssp EEEECCCC
T ss_pred EEEEEEEe
Confidence 99999985
|
| >2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A | Back alignment and structure |
|---|
Probab=84.85 E-value=3.3 Score=31.75 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=58.3
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEee-cCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVD-DHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~-~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
|.|-+- +|++.. ...|||++|++.- ..|..-...+.|.+. ...+..=.||.++++...-+.+.. .+.+
T Consensus 18 v~Ie~i-glkda~-----~~~~P~~tVSV~D---~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~--G~ai 86 (152)
T 2qzq_A 18 LTIEKI-GLKDAG-----QCIDPYITVSVKD---LNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPK--GAAI 86 (152)
T ss_dssp EEEEEE-ECTTGG-----GCEEEEEEEEEEC---TTSCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGSCT--TCEE
T ss_pred EEEEEE-EeCCHH-----HccCCeEEEEEEc---CCCCCccccccCCCcceecCCeEEEeeEEEeeCcHHHCCC--CcEE
Confidence 344443 777764 3579999998732 112111345667665 223445678877777544333333 2579
Q ss_pred EEEEEEccCCCC-CeeeEEEEEeCccccC
Q 029535 82 YLQLYTKTLISG-QTLLGWCQIPVNDIGF 109 (192)
Q Consensus 82 ~veV~d~~~~~~-d~~IG~~~IpL~~l~~ 109 (192)
.||++++..-.+ -...+++.+++.++..
T Consensus 87 vfElkH~k~kkkk~S~kCw~f~~~d~i~~ 115 (152)
T 2qzq_A 87 FFEFKHYKPKKRFTSTKCFAFMEMDEIKP 115 (152)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEGGGCCS
T ss_pred EEEEEEecccceeeeeeeEEEEEhhhccc
Confidence 999999866322 2468899999998853
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 192 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 6e-07 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-05 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-05 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 5e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 7e-05 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-04 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-04 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 54.0 bits (129), Expect = 2e-10
Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 23/146 (15%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+E+ ++SA+GL++ F + + P+V +T ++ V + G P W
Sbjct: 12 LEVVLVSAKGLEDAD---FLNNMDPYVQLT----------CRTQDQKSNVAEGMGTTPEW 58
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+ F + +++ K + + +G IP+ + GS+ +Y
Sbjct: 59 NETFIFTVS------EGTTELKAKIFDKDVGTEDDAVGEATIPLEPV--FVEGSIPPTAY 110
Query: 121 RLRARDGSRGHGVVNLAIKLEPVVPD 146
+ + +G + +A+ +P P
Sbjct: 111 NVVKDEEYKGE--IWVALSFKPSGPS 134
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 45.3 bits (106), Expect = 3e-07
Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 16/142 (11%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
++I I A LK T+++L + T P + D +T +P W
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI-GQTAT-KQKTNSPAW 65
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
D+F I L ++ I + C I ++ G
Sbjct: 66 HDEFV-------TDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEEL-LQNGSRHFEDWI 117
Query: 121 RLRARDGSRGHGVVNLAIKLEP 142
L G V + I L
Sbjct: 118 DL------EPEGKVYVIIDLSG 133
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 6e-07
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ + I+S Q L + S + P V + + + +T V + G NP W
Sbjct: 6 LRVRIISGQQLPKVNKNKNSI-VDPKVIVEIHGV-----GRDTGSRQTAVITNNGFNPRW 59
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVND 106
+F A + + S +G IP N
Sbjct: 60 DMEFEFEVTV-----PDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 100
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 1e-05
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 9/111 (8%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ +TIL A+ L + + P+V I P + + + + P W
Sbjct: 16 LIVTILGAKDLPSREDGRPRN---PYVKIYFLPDRSDKNKRRTKTVK------KTLEPKW 66
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPP 111
F F R I L + LG I +
Sbjct: 67 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 117
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.1 bits (93), Expect = 3e-05
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ + + A+ L S P+V + P K +T+ +NP W
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSD---PYVKLKLIPD-----PKSESKQKTK-TIKCSLNPEW 67
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI 107
+ F +++ + ++++ L S +G ++++
Sbjct: 68 NETFRFQLK----ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 110
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 3e-05
Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ + I+ A L S P+V + P + T+V +NP +
Sbjct: 36 LLVGIIQAAELPALDMGGTSD---PYVKVFLLP-------DKKKKFETKVH-RKTLNPVF 84
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
++F + + + +Y S ++G ++P+N + G V
Sbjct: 85 NEQFTFKVPYSEL---GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHVTEEWR 138
Query: 121 RLRA 124
L++
Sbjct: 139 DLQS 142
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 5e-05
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 21/130 (16%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
++IT++SA+ +N S P+V +T D
Sbjct: 8 LQITVISAKLKENKKNWFGPS---PYVEVTV--------DGQSKKTEKC----------N 46
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+ ++ ++++ + LLG + + + + +
Sbjct: 47 NTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 106
Query: 121 RLRARDGSRG 130
L+
Sbjct: 107 TLQLGGDKEP 116
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (89), Expect = 7e-05
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ IT++S Q L +R +V + + GD +NP W
Sbjct: 3 LSITVISGQFLSE-------RSVRTYVEVELFG---LPGDPKRRYRTKLSPSTNSINPVW 52
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVN 105
++ +V F + L + G LG IP+N
Sbjct: 53 KEEPFV------FEKILMPELAS-LRVAVMEEGNKFLGHRIIPIN 90
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 2e-04
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ +L A + +F P+V + RTR + +NP W
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-------STTPDSRKRTR-HFNNDINPVW 56
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
+ F D N+ + + L + + LG V+ + G + + +
Sbjct: 57 NETFEFILDP-----NQENVLEITLMDANYVMDE-TLGTATFTVSSM---KVGEKKEVPF 107
Query: 121 RLRARDGSRGHGVVNLAIKLEP 142
V+ +++++
Sbjct: 108 IFN----QVTEMVLEMSLEVAS 125
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 2e-04
Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 26/141 (18%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+++ +L A L F+ S PF + + + +NP W
Sbjct: 8 LQVKVLKAADLLAADFSGKSD---PFCL-----------LELGNDRLQTHTVYKNLNPEW 53
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120
F P + + + + ++ + LG IP+ I G Y
Sbjct: 54 NKVFTFP------IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI--RDGQPN---CY 102
Query: 121 RLRARDG-SRGHGVVNLAIKL 140
L+ +D GV+ L + L
Sbjct: 103 VLKNKDLEQAFKGVIYLEMDL 123
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 4e-04
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW 60
+ I A+GL +S +TI + H +TRV ++P +
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTI---------LPEKKHKVKTRVL-RKTLDPAF 73
Query: 61 GDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG 112
+ F ++ + + S ++G IP++ I G
Sbjct: 74 DETFTFYGIPYTQIQEL--ALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG 123
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 192 | |||
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.91 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.89 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.89 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.86 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.86 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.84 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.8 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.79 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.76 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.76 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.75 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.74 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.72 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.72 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.72 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.65 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 96.82 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 92.86 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=1.3e-24 Score=163.63 Aligned_cols=122 Identities=20% Similarity=0.453 Sum_probs=101.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +++||||++.+ ++ ++.+|+++.+++.||.|||+|.|.+.+. ...
T Consensus 12 L~V~v~~a~~L~~~d--~~-g~~Dpyv~v~~------~~----~~~~t~~~~~~~~nP~Wne~f~f~v~~~------~~~ 72 (136)
T d1wfja_ 12 LEVVLVSAKGLEDAD--FL-NNMDPYVQLTC------RT----QDQKSNVAEGMGTTPEWNETFIFTVSEG------TTE 72 (136)
T ss_dssp EEEEEEEEEECSSCC--SS-CSSCCCEEEES------SS----CEEECCCCTTCCSSCEEEEEEEEEEESS------CCE
T ss_pred EEEEEEEeeCCCCCC--CC-CCCCccEEEEE------ee----eeEEEEEEecCCCcEEEeeEEEEEEcCc------cce
Confidence 689999999999988 44 58999999975 32 5788999887789999999999999862 146
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~ 145 (192)
|.|+|||++.+++|++||.+.|||.++... +.....||.|.. ++ +.+|+|+|++.|.|..+
T Consensus 73 L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~--~~~~~~~~~l~~-~~-~~~G~i~l~l~~~p~~p 133 (136)
T d1wfja_ 73 LKAKIFDKDVGTEDDAVGEATIPLEPVFVE--GSIPPTAYNVVK-DE-EYKGEIWVALSFKPSGP 133 (136)
T ss_dssp EEEEECCSSSCTTTCCSEEEEEESHHHHHH--SEEEEEEEEEEE-TT-EEEEEEEEEEEEEECCS
T ss_pred EEEEEEEecCCCCCCEEEEEEEEhHHhccc--CCcCcEEEEecC-CC-ccCEEEEEEEEEEeCCC
Confidence 999999999988899999999999998642 244566888875 34 78999999999998653
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.7e-23 Score=153.89 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=94.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. |.+||||++.+ + .++++|++++ ++.||.|||+|.|.+.+. ...
T Consensus 8 L~V~v~~A~~L~~~d--~~-g~~Dpyv~v~~------~----~~~~~T~~~~-~t~nP~wne~f~f~v~~~------~~~ 67 (126)
T d2ep6a1 8 LQVKVLKAADLLAAD--FS-GKSDPFCLLEL------G----NDRLQTHTVY-KNLNPEWNKVFTFPIKDI------HDV 67 (126)
T ss_dssp EEEEEEEEESCCCSS--SS-SCCCEEEEEEE------T----TEEEECCCCS-SCSSCCCCEEEEEEESCT------TCE
T ss_pred EEEEEEEeECCCCCC--CC-CCcCeEEEEEc------C----CeEEEEEeeC-CceeEEEEEEEEEEEecc------Cce
Confidence 689999999999987 33 58999999986 3 2688999987 589999999999999762 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+++|++||++.|+|+++.... ..||.|...++ ++.+|.|+|++.+..
T Consensus 68 L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 68 LEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-----PNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEEEEEEEETTEEEEECCBCEEEGGGCCSSC-----CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred eEEEEEEccCCcCcceEEEEEEEHHHCCCCC-----ceEEEccccCCCCceeEEEEEEEEEEE
Confidence 9999999998888999999999999985321 23677654332 257899999998763
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=4.9e-22 Score=149.06 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=94.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+.. .++.+||||+|++++.. . ..++.+|+++++++.||.|||+|.|.+.... ...
T Consensus 6 l~V~Vi~a~~L~~~~~~-~~~~~DPyV~v~l~g~~---~--~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~-----~~~ 74 (131)
T d1qasa2 6 LRVRIISGQQLPKVNKN-KNSIVDPKVIVEIHGVG---R--DTGSRQTAVITNNGFNPRWDMEFEFEVTVPD-----LAL 74 (131)
T ss_dssp EEEEEEEEESCCCCC------CCCEEEEEEEESST---T--TCEEEECCCCSSCSSSCEEEEEEEEEESCGG-----GCE
T ss_pred EEEEEEEeeCCCCCCCC-CCCCcCeEEEEEEccCC---C--CcEEEEEEEEecccCCceEEEEEEEEEEcch-----hce
Confidence 68999999999765421 23579999999987631 1 2478899998877889999999999886622 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~ 141 (192)
|.|+|+|++.+++|++||++.|||..+.. + ..+++|.+..|.. ..+.|.+.+.+.
T Consensus 75 L~~~V~D~d~~~~d~~iG~~~i~l~~l~~---g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 75 VRFMVEDYDSSSKNDFIGQSTIPWNSLKQ---G---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp EEEEEEECCTTTCCEEEEEEEEEGGGBCC---E---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEEEEecCCCCCcEEEEEEEEEeccCC---C---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 99999999998889999999999999852 1 2379999888733 345666666553
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.9e-21 Score=146.53 Aligned_cols=121 Identities=15% Similarity=0.235 Sum_probs=94.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||++.+ ++ ++++|++.+ ++.||.|||.|.|.+... ..
T Consensus 8 L~v~v~~A~~~~~~~--~~-~~~dpyv~v~~------~~----~~~kT~v~~-~t~nP~wne~f~f~~~~~-------~~ 66 (133)
T d2nq3a1 8 LQITVISAKLKENKK--NW-FGPSPYVEVTV------DG----QSKKTEKCN-NTNSPKWKQPLTVIVTPV-------SK 66 (133)
T ss_dssp EEEEEEEEEECCCC----C-CCCCEEEEEEE------TT----EEEECCCCS-SCSSCEEEEEEEEEECTT-------CE
T ss_pred EEEEEEEeECCCcCC--CC-CCcCeEEEEEE------CC----eEEeeEEEE-ecccEEEcceEEEEEEec-------ce
Confidence 689999999999887 33 47999999986 32 578999876 589999999999998762 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCC--cceeEEEEEEeCC-CCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGG--SVRNLSYRLRARD-GSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~--~~~~~~y~L~~~~-G~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+++|++||++.|+|.++.....+ .....++.+..+. +.+..|+|++.+....
T Consensus 67 l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 67 LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred eEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence 999999999999999999999999998643333 2244556666643 3357799998887554
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.4e-21 Score=143.45 Aligned_cols=121 Identities=17% Similarity=0.308 Sum_probs=93.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+.....-+.+.+||||++.+ +++ ..+++||+++. ++.||.|||+|.|.+... + ...
T Consensus 5 l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l------~~~-~~~~~~T~~~~-~t~nP~wne~f~f~i~~~---~--~~~ 71 (126)
T d1rlwa_ 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI------STT-PDSRKRTRHFN-NDINPVWNETFEFILDPN---Q--ENV 71 (126)
T ss_dssp EEEEEEEEESCCSCHHHHHHCCCCEEEEEEC------TTS-TTCCEECCCCT-TCSSCEEEEEEEEEECTT---S--CCE
T ss_pred EEEEEEEccCCCCccccccCCCCCcEEEEEE------CCc-ccceeEeeecC-CCccceeceeeeecccCc---c--cCc
Confidence 6899999999997641112257999999975 332 24678999886 589999999999998762 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+ +|++||.+.|+|++|.. +.....||+|. . ..+|.|++.+.+.+
T Consensus 72 L~v~V~d~d~~-~d~~lG~~~i~L~~l~~---~~~~~~~~~L~---~-~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 72 LEITLMDANYV-MDETLGTATFTVSSMKV---GEKKEVPFIFN---Q-VTEMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEECCSS-CCEEEEEEEEEGGGSCT---TCEEEEEEEET---T-TEEEEEEEEEECCC
T ss_pred EEEEEEECCCC-CCCeEEEEEEEHHHccC---CCeEEEEEEcc---C-CCeEEEEEEEEEEe
Confidence 99999999875 78999999999999953 23456799993 2 45799999998765
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.84 E-value=1.2e-20 Score=142.37 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=93.5
Q ss_pred CEEEEEEeeCCCCCCC--------CCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCc
Q 029535 1 MEITILSAQGLKNTSF--------TLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNA 72 (192)
Q Consensus 1 LeVtVisAk~L~~~~~--------~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~ 72 (192)
|+|+|++|++|++.+. ..-.+.+||||++.+ +. ....+|++.. ++.||.|||+|.|.+.+ .
T Consensus 8 L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l------~~---~~~~~T~~~~-~t~~P~Wne~f~f~v~~-~ 76 (136)
T d1gmia_ 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV------DD---SRIGQTATKQ-KTNSPAWHDEFVTDVCN-G 76 (136)
T ss_dssp EEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE------TT---EEEEECCCCS-SCSSCEEEEEEEEEEEE-E
T ss_pred EEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe------CC---CcCcEeeEEc-CCCCccCccEEEEEEec-C
Confidence 6899999999997531 011247899999987 32 2456888775 58899999999999976 1
Q ss_pred cccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 73 FFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 73 l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
..|.|+|||++.+++|++||.+.|+|+++..... .....||+| +++|+|++.+.|.+.
T Consensus 77 ------~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~w~~L------~p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 77 ------RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS-RHFEDWIDL------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp ------CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC-SEEEEEEEC------BSSCEEEEEEEEEEE
T ss_pred ------CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC-cceeEEEeC------CCCcEEEEEEEEEeC
Confidence 4799999999998899999999999999975433 234568887 357889999999874
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2.7e-19 Score=133.59 Aligned_cols=107 Identities=14% Similarity=0.258 Sum_probs=85.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+.++ . .+.+||||++.+... +.+..+++|++++ ++.||+|||+|.|.+.... . ...
T Consensus 17 L~V~V~~a~~L~~~d--~-~g~~DpYv~v~l~~~-----~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~--~--~~~ 83 (132)
T d1a25a_ 17 LIVVVRDAKNLVPMD--P-NGLSDPYVKLKLIPD-----PKSESKQKTKTIK-CSLNPEWNETFRFQLKESD--K--DRR 83 (132)
T ss_dssp EEEEEEEEESCCCCS--T-TSCCCEEEEEEEESC-----TTCSSCEECCCCS-SCSSCEEEEEEEEECCSGG--G--GCE
T ss_pred EEEEEEeeeCCCCCC--C-CCCcCeEEEEEEccC-----CCCccccEEeeec-CCCCCccceEEEEEeEccc--c--CCE
Confidence 689999999999887 2 358899999987431 1124688999986 5899999999999987621 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.+++|++||.+.|+|+++... . ...||+|..
T Consensus 84 L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~---~-~~~W~~L~~ 123 (132)
T d1a25a_ 84 LSVEIWDWDLTSRNDFMGSLSFGISELQKA---G-VDGWFKLLS 123 (132)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEHHHHTTC---C-EEEEEECBC
T ss_pred EeEEEEecCCCCCCcEeEEEEEeHHHcCCC---C-CCeEEECCC
Confidence 999999999988999999999999998532 1 245999975
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.9e-19 Score=135.27 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=79.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+.|++|+..+ ++||||++.+ + .++.+|++.+ +.||.|||+|.|.+... ...
T Consensus 4 L~V~v~~a~~l~~~~------~~dpYv~l~~------~----~~k~~T~~~k--~~nP~Wne~f~f~v~~~------~~~ 59 (128)
T d2cjta1 4 LCVGVKKAKFDGAQE------KFNTYVTLKV------Q----NVKSTTIAVR--GSQPSWEQDFMFEINRL------DLG 59 (128)
T ss_dssp EEEEEEEEECSSCGG------GCEEEEEEEE------T----TEEEECCCEE--SSSCEEEEEEEEEECCC------SSE
T ss_pred EEEEEEEEECCCCCC------CcCeEEEEEe------C----CEEEEEEEec--CCCCeEEEEEEEeeccc------cce
Confidence 689999999999876 5799999987 3 3688999885 46999999999999772 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|||++.+ +|++||++.|||+++....+ .....||+|..+
T Consensus 60 L~v~V~d~~~~-~d~~lG~~~I~L~~l~~~~~-~~~~~W~~L~~~ 102 (128)
T d2cjta1 60 LTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNE-EGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEECCSS-CEEEEEEEEEEGGGSCBCSS-CCCCEEEECBC-
T ss_pred EEEEEEeCCCc-CCcceEEEEEEehhhccCCC-CCCCeeEECCcc
Confidence 99999999875 79999999999999965332 223459998643
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=2.3e-19 Score=133.92 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=83.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+..||||++.+. ++ +.++++|++++ ++.||.|||+|.|.+....+ +. ..
T Consensus 20 L~V~V~~a~~L~~~~--~-~g~~dpyv~v~l~------~~-~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~~-~~--~~ 85 (130)
T d1dqva1 20 LVVRILQALDLPAKD--S-NGFSDPYVKIYLL------PD-RKKKFQTKVHR-KTLNPIFNETFQFSVPLAEL-AQ--RK 85 (130)
T ss_dssp EEEEEEEEECCCCCS--T-TSCCCEEEEEECT------TS-TTSCEECCCCC-SCSSCEEEEEEEEECCGGGG-SS--CC
T ss_pred EEEEEEeeeCCcccc--C-CCCcceEEEEEEc------cC-CCceEeceeEc-CCCCeeeeeEEEEEEchHHc-CC--Ce
Confidence 689999999999887 3 3589999999762 22 24678999986 58999999999999876332 22 46
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc-cCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI-GFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l-~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.+++|++||.+.|++... ...+.. ...||+|.+
T Consensus 86 L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~--~~~W~~L~~ 128 (130)
T d1dqva1 86 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD--RPLWRDILE 128 (130)
T ss_dssp CEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS--CCCCEECBC
T ss_pred EEEEEEEcCCCCCCceEEEEEECchhhhhcCCCC--CcEEEeccc
Confidence 999999999988999999999997654 333222 345999863
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=5e-19 Score=133.95 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=84.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|+||+..+ . ++..||||++.+.+ + +.++.+|++++ ++.||.|||+|.|.+....+ .. ..
T Consensus 36 L~V~V~~a~~L~~~~--~-~g~~dpyV~v~l~~------~-~~~~~kT~~~~-~t~~P~wne~f~f~i~~~~l-~~--~~ 101 (143)
T d1rsya_ 36 LLVGIIQAAELPALD--M-GGTSDPYVKVFLLP------D-KKKKFETKVHR-KTLNPVFNEQFTFKVPYSEL-GG--KT 101 (143)
T ss_dssp EEEEEEEEESCCCCS--T-TSCCCEEEEEEEET------T-CCSCEECCCCT-TCSSCEEEEEEEECCCHHHH-TT--CE
T ss_pred EEEEEEEccCCCCCC--C-CCCCCeEEEEEEcC------C-CCeeEEEEEec-cccCcceeeeeEEEEEeecc-CC--ce
Confidence 689999999999887 2 35899999998743 1 13578999886 58999999999999875322 22 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|||++.++++++||.+.|+|.++... .....||+|.
T Consensus 102 L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 141 (143)
T d1rsya_ 102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQ 141 (143)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCCS---SCEEEEEECB
T ss_pred EEEEEEEcCCCCCCcEEEEEEEEchhccCC---CCCccEEeCC
Confidence 999999999988899999999999998532 2345699985
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.6e-18 Score=128.10 Aligned_cols=96 Identities=20% Similarity=0.340 Sum_probs=77.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|+||+..+ ..++..||||++.+.+ + +.++++|++++ ++.||.|||+|.|. ++...+ . ..
T Consensus 24 L~V~V~~a~~L~~~d--~~~~~~dpyV~v~l~~------~-~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l-~--~~ 90 (138)
T d1ugka_ 24 FVVNIKEARGLPAMD--EQSMTSDPYIKMTILP------E-KKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQI-Q--EL 90 (138)
T ss_dssp EEEEEEEEESCCCCB--TTTTBCEEEEEEEEET------T-TCSEEECCCCS-SCSSCEEEEEEEEECCCSTTG-G--GC
T ss_pred EEEEEEEecCCCCCC--CCCCccceEEEEEEcC------C-CCEeEeCeeEe-CCCCCceeeEEEEeeeCHHHc-c--cc
Confidence 689999999999887 3444579999998743 2 24688999886 58999999999996 554222 2 24
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|+|+|||.+.+++|++||++.|+|.++..
T Consensus 91 ~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~ 120 (138)
T d1ugka_ 91 ALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120 (138)
T ss_dssp EEEEEEEEECSSCCCCCCEEEEEECTTCCC
T ss_pred eEEEEEEECCCCCCCcEEEEEEEEcccccC
Confidence 899999999998889999999999999853
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.8e-18 Score=125.47 Aligned_cols=114 Identities=20% Similarity=0.382 Sum_probs=79.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEe-ecCCCCCCeeceE-EEEE-cccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRV-DDHGGVNPTWGDK-FYVP-TDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v-~~~~g~nP~WNE~-f~f~-v~~~~l~~~~ 77 (192)
|.|+|||||+|++. +.||||+|+++|.. .|. ..+.+|++ .+++|.||.|||. |.|. +... +
T Consensus 3 l~V~Visaq~L~~~-------~~dPyV~V~l~g~~---~D~-~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-----~ 66 (122)
T d2zkmx2 3 LSITVISGQFLSER-------SVRTYVEVELFGLP---GDP-KRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-----E 66 (122)
T ss_dssp EEEEEEEEESCCSS-------CCCEEEEEEEECCT---TSC-CCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-----G
T ss_pred EEEEEEEeeCCCCC-------CCCcEEEEEEECcC---CCC-CccEEEEEEEeCCeecceEcccEeEEEecCCC-----c
Confidence 68999999999753 47999999998742 232 23445554 4577999999986 4443 3331 2
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKL 140 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f 140 (192)
.+.|+|+|+|++ |++||++.|||+.+... ..+.+|++++|.. ..+.|-+.+.+
T Consensus 67 l~~L~f~V~D~d----~~~lG~~~ipl~~l~~G------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 67 LASLRVAVMEEG----NKFLGHRIIPINALNSG------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp GCEEEEEEEETT----TEEEEEEEEEGGGBCCE------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred ccEEEEEEECCC----CCEEEEEEEEcccCcCC------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 368999999974 78999999999999532 2368999888843 33344444443
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.4e-18 Score=125.28 Aligned_cols=106 Identities=20% Similarity=0.326 Sum_probs=78.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|+||+..+. ++..||||++.+.. +..+.++++|++++ ++.||.|||+|.|. +....+ .. .
T Consensus 16 L~V~V~~a~~L~~~~~---~~~~dpyVkv~l~~-----~~~~~~~~kT~~~~-~t~~P~wne~f~f~~~~~~~l-~~--~ 83 (125)
T d2bwqa1 16 LIVTILGAKDLPSRED---GRPRNPYVKIYFLP-----DRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREF-RE--R 83 (125)
T ss_dssp EEEEEEEEESCCCCTT---SCCBCEEEEEEEES-----SCSGGGEEECCCCS-SBSSCEEEEEEEECSCCGGGG-GG--C
T ss_pred EEEEEEEeECCCCcCC---CCCCCEEEEEEEeC-----CCCCccccccCEEc-CCCCCEEccEEEEeeeChhhc-CC--C
Confidence 6899999999998762 35899999998743 11135788999987 58999999999996 554222 22 4
Q ss_pred EEEEEEEEccCCC--CCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLIS--GQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~--~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|||++.+. ++++||++.|+|+++..... ..||+|
T Consensus 84 ~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~----~~Wy~L 124 (125)
T d2bwqa1 84 MLEITLWDQARVREEESEFLGEILIELETALLDDE----PHWYKL 124 (125)
T ss_dssp EEEEEEEEC-------CEEEEEEEEEGGGCCCSSC----EEEEEC
T ss_pred EEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC----CEEEeC
Confidence 8999999988753 45699999999999864332 348987
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1.1e-18 Score=131.07 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=84.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccC----CCCCccEEEeEeecCCCCCCeeceEEEEE-cccCcccc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTS----GDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~----~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~ 75 (192)
|.|+|++|+||+..+ . .+.+||||++.++...... ...+.+++||++++ ++.||.|||+|.|. +....+ .
T Consensus 20 L~V~V~~A~~L~~~d--~-~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~-~ 94 (142)
T d1rh8a_ 20 LIIHILQARNLVPRD--N-NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQL-M 94 (142)
T ss_dssp EEEEEEEEESCCCCS--S-SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHH-T
T ss_pred EEEEEEEeECCCCcC--C-CCCCCcCEEEEEecCcccccccccCCCceeeeccCCc-CCCCceeEEEEEEeeeccccc-C
Confidence 689999999999987 3 3589999999874311000 00012446788887 47899999999997 443221 2
Q ss_pred CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 76 NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 76 ~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
...|.|+|||++.+++|++||.+.|+|.++... .....||+|..++
T Consensus 95 --~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~---~~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 95 --KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL---DNTPRWYPLKEQT 140 (142)
T ss_dssp --TCEEEEEEEEECSSSCEEEEEEEEEETTSCGGG---TTCCEEEECBCCC
T ss_pred --CCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCC---CCceEEEECcCcC
Confidence 248999999999888899999999999998532 2234699997643
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=8.5e-18 Score=126.34 Aligned_cols=95 Identities=16% Similarity=0.284 Sum_probs=72.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ . ++.+||||++.++. + +....+++|++++ ++.||.|||+|.|.++...+ + ...
T Consensus 17 L~V~v~~a~~L~~~~--~-~~~~dpyvkv~l~~----~-~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~-~--~~~ 84 (138)
T d1w15a_ 17 LTVVVLKARHLPKSD--V-SGLSDPYVKVNLYH----A-KKRISKKKTHVKK-CTPNAVFNELFVFDIPCESL-E--EIS 84 (138)
T ss_dssp EEEEEEEEESCC---------CCCEEEEEEEEE----T-TEEEEEEECCCCC-SCSSEEEEEEEEEECCSSSS-T--TEE
T ss_pred EEEEEEEeECCCCCC--C-CCCcCEEEEEEEeC----C-cccCccccceeEC-CCCCCeECcEEEEEecHHHh-C--ccE
Confidence 679999999999887 2 35789999998743 1 1124567899886 57999999999999977433 2 257
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.++++++||++.|++...
T Consensus 85 l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 85 VEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred EEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 999999999988999999999999864
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.6e-17 Score=125.01 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=82.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+.|++|... +..||||++.+++ +.+..+++|++++ ++.||.|||+|.|.+....+ . ...
T Consensus 28 L~V~v~~a~~L~~~------g~~dpyVkv~l~~------~~~~~~~kT~v~~-~~~~P~wne~f~f~v~~~~l-~--~~~ 91 (138)
T d1wfma_ 28 LFVTRLEAVTSNHD------GGCDCYVQGSVAN------RTGSVEAQTALKK-RQLHTTWEEGLVLPLAEEEL-P--TAT 91 (138)
T ss_dssp EEEEEEEEECCCCS------SCCCEEEEEEEEE------TTEEEEEECCCCC-CCSSEECSSCEEEECCTTSS-T--TCE
T ss_pred EEEEEEEcCCCCCC------CCcCcEEEEEECC------CCCccceeeeEEC-CCCCceEeeeEEEEeeehhc-c--ceE
Confidence 68999999999532 4689999998743 2224578899886 58999999999999976332 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|||++.++++++||++.|+|.++.... ....||+|..
T Consensus 92 L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~W~~L~~ 132 (138)
T d1wfma_ 92 LTLTLRTCDRFSRHSVAGELRLGLDGTSVPL---GAAQWGELKT 132 (138)
T ss_dssp EEEEEEECCSSCTTSCSEEEEEESSSSSSCT---TCCEEEECCC
T ss_pred EEEEEeeecccccceeeeEEEEEhHHccCCC---CceEeEeCCC
Confidence 9999999999888999999999999985322 2356999964
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2e-17 Score=127.02 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=84.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+.. .+....+.+|++.+ ++.||.|||+|.|.+...++ + ...
T Consensus 27 L~V~V~~a~~L~~~~--~-~~~~dpyV~v~l~~-----~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l-~--~~~ 94 (157)
T d1uowa_ 27 LTVVILEAKNLKKMD--V-GGLSDPYVKIHLMQ-----NGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQI-Q--KVQ 94 (157)
T ss_dssp EEEEEEEEESCCCCS--T-TSCCCEEEEEEEEE-----TTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGG-G--GCE
T ss_pred EEEEEEEEEEccccc--C-CCCCCeeEEEEEec-----CCccccceeccccc-CCCCcccCCeEEEEecHHHc-C--ccE
Confidence 689999999999876 2 35899999998742 22123456899886 68999999999999987443 2 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc----------cCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI----------GFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l----------~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|.+.++++++||.+.|++... ...+. .....||.|..
T Consensus 95 l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~-~~v~~Wh~L~~ 147 (157)
T d1uowa_ 95 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR-RPIAQWHTLQV 147 (157)
T ss_dssp EEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTT-CCEEEEEECBC
T ss_pred EEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCC-CceeEeEeCCC
Confidence 999999999998999999999999764 22222 33457999863
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=4.5e-17 Score=121.48 Aligned_cols=95 Identities=15% Similarity=0.305 Sum_probs=76.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ . ++..||||++.+.. + +....++||++++ ++.||.|||+|.|.+....+ . ...
T Consensus 17 L~V~v~~a~nL~~~~--~-~~~~dpyv~v~l~~----~-~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l-~--~~~ 84 (137)
T d2cm5a1 17 LIVGIIRCVHLAAMD--A-NGYSDPFVKLWLKP----D-MGKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSDL-A--KKS 84 (137)
T ss_dssp EEEEEEEEESCCCCS--T-TSCCCEEEEEEEET----C----CCEEECCCCC-SCSSCEEEEEEEEECCGGGG-G--GCE
T ss_pred EEEEEEEEECCCCCC--C-CCCcCeEEEEEEEc----C-CccceeecCEeEc-CCCCCccceEEEEEeEHHHc-c--ccE
Confidence 689999999999876 2 35899999998743 1 1124678999887 57999999999999976432 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|.|+|++.++++++||.+.|++.++
T Consensus 85 l~v~v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 85 LDISVWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred EEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence 999999999988999999999999875
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.2e-17 Score=124.85 Aligned_cols=95 Identities=17% Similarity=0.339 Sum_probs=76.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ . .+..||||+|.+.. .+....+.+|++.+ ++.||.|||+|.|.+....+ +. ..
T Consensus 22 L~V~V~~a~nL~~~~--~-~~~~dpyv~v~l~~-----~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~-~~--~~ 89 (145)
T d1dqva2 22 LTVTIIKASNLKAMD--L-TGFSDPYVKASLIS-----EGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPESV-EN--VG 89 (145)
T ss_dssp EEEEEEEEESCCCCS--S-SSCCCEEEEECCCT-----TCCTTSCEECCCCC-SCSSCEEEECCCCCCCSGGG-GS--CC
T ss_pred EEEEEEEEeCCCCcC--C-CCCcCceEEEEEcc-----CCccceeecCEEEe-CCCCceecceEEEEEehhhc-CC--CE
Confidence 689999999999876 2 35789999997632 11123468899886 58999999999999876332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.++++++||.+.|+|..+
T Consensus 90 l~v~v~d~~~~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 90 LSIAVVDYDCIGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp CCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred EEEEEEecCCCCCCcEEEEEEECchHc
Confidence 999999999988999999999999876
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.5e-16 Score=116.96 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=75.1
Q ss_pred CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEE
Q 029535 20 SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGW 99 (192)
Q Consensus 20 ~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~ 99 (192)
++.+||||+|.+-.... ...+.+|++.+ .+.||+|||+|.|.+.+. ..|.|.|||++ |+++|.
T Consensus 21 ~~~~dPY~~v~l~~~~~-----~~~~~~t~~~k-kT~nP~WnE~F~~~v~~~-------~~l~i~V~d~d----d~~~g~ 83 (123)
T d1bdya_ 21 DDASQPFCAVKMKEALT-----TDRGKTLVQKK-PTMYPEWKSTFDAHIYEG-------RVIQIVLMRAA----EDPMSE 83 (123)
T ss_dssp CCSCCCEEEEEEEEECC-----GGGTTBEEECS-CCBCCCTTCEEEEECCTT-------CEEEEEEEEET----TEEEEE
T ss_pred CCCCCCEEEEEEcCccc-----cccceEEEEeC-CCCCcccceEEEEEEccc-------cEEEEEEEEcc----ccccCc
Confidence 46899999998733211 11234677765 589999999999999762 47999999974 789999
Q ss_pred EEEeCccccCC--CCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 100 CQIPVNDIGFP--PGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 100 ~~IpL~~l~~~--~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
+.|++.+|... ..+.....|+.| +++|.|++.++|..
T Consensus 84 ~~i~l~~l~~~~~~~~~~~~~W~~L------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 84 VTVGVSVLAERCKKNNGKAEFWLDL------QPQAKVLMCVQYFL 122 (123)
T ss_dssp EEEEHHHHHHHHHTTTTEEEEEEEC------BSSCEEEEEEEEEE
T ss_pred cEEehhheeeccccCCCcccEEEeC------CCCEEEEEEEEEec
Confidence 99999999431 233456689887 35789999999864
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.25 Score=35.76 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccC--ceeEEEEEEEEccCCCCCeeeEEE
Q 029535 23 IRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFAN--RYACIYLQLYTKTLISGQTLLGWC 100 (192)
Q Consensus 23 ~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~--~~~~L~veV~d~~~~~~d~~IG~~ 100 (192)
.--||+++.| + ...+.|++.. |.+|.+|-+-.+.+....+.-. ....+.++++.... ..-..|+.+
T Consensus 34 p~tF~T~~Fy-----d----~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~lelhqa~g-~~~~tvA~g 101 (142)
T d2yrba1 34 PVTFCTYAFY-----D----FELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYS-TEYETIAAC 101 (142)
T ss_dssp CEEEEEECST-----T----CCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECS-SCEEEEEEE
T ss_pred CcEEEEEEEE-----e----eeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEEEEEEeecC-CCcceeEEE
Confidence 3456766654 1 2456799885 7999999998887665333211 12478999998653 234689999
Q ss_pred EEeCccccCCCCCcceeEEEEEEeCCCC-cccEEEEEEEEE
Q 029535 101 QIPVNDIGFPPGGSVRNLSYRLRARDGS-RGHGVVNLAIKL 140 (192)
Q Consensus 101 ~IpL~~l~~~~~~~~~~~~y~L~~~~G~-k~~G~l~l~v~f 140 (192)
.|.|.+++... +. ...+-.|.++.|. ..-|.|.+.+++
T Consensus 102 ~i~l~~lLd~~-~r-~~~s~~l~g~~~~~~~~G~leyw~rl 140 (142)
T d2yrba1 102 QLKFHEILEKS-GR-IFCTASLIGTKGDIPNFGTVEYWFRL 140 (142)
T ss_dssp EECCSHHHHCC-SC-EEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred EEEhhHhhCcc-cc-ccceeEEEccCCCcceEEEEEEEEEE
Confidence 99999998643 33 3346677777663 368999998875
|