Citrus Sinensis ID: 029538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MAEAQSDKTPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHcccccccccccccEEEEEEEccccccccEccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHcccccHHccccccEEccccccccccccEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHEEEEHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maeaqsdktpsLAEDYLLEKekqdvatkpvevKEVESAVTassvegatdkveetpaaaaveeskedapapapeesteassaspedstsdtapaaaeessetteeensgdqeaseetpdikletapadfrfpttnqtrhCFTRYIEYHRcvaakgegapecDKFAKYYralcpsdwvcftKASCALITCMLAV
Flexible Loop (DISEMBL)
maeaqsdktpslaedyllekekqdvatkpvevKEVEsavtassvegatdkveeTPAAaaveeskedapapapeesteassaspedstsdtapaaaeessetteeensgdqeaseetpdikletapadfrfpttnQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Low Complexity Region (SEG)
MAEAQSDKTPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKveetpaaaaveeskedapapapeesteassaspedstsdtapaaaeessetteeeNSGDQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Disordered region (IsUnstruct)
*******************************************************************************************************************************FRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCML**
Disordered Region (DISOPRED)
***********************************************************************************************************************KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Disordered Region (DISEMBL)
**********SLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKV*****************************************************************PDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Disordered Region (DISPRO)
*******************KE*QDVATKPVEVKEVESA******************************************************************************PDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEAQSDKTPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCMLAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q9S7L9	191	Cytochrome c oxidase subu	yes	no	0.848	0.853	0.556	2e-42
Q9SUD3	78	Cytochrome c oxidase subu	no	no	0.307	0.756	0.796	1e-24
Q945L0	78	Cytochrome c oxidase subu	no	no	0.307	0.756	0.762	9e-24
O94581	86	Cytochrome c oxidase subu	yes	no	0.338	0.755	0.485	1e-12
Q01519	83	Cytochrome c oxidase subu	yes	no	0.291	0.674	0.517	1e-12
Q9LPJ2	134	Putative cytochrome c oxi	no	no	0.25	0.358	0.458	1e-10
P14854	86	Cytochrome c oxidase subu	yes	no	0.322	0.720	0.430	1e-10
Q5RCT0	86	Cytochrome c oxidase subu	no	no	0.322	0.720	0.430	2e-10
Q53CG4	87	Cytochrome c oxidase subu	yes	no	0.322	0.712	0.415	2e-10
Q4R374	87	Cytochrome c oxidase subu	N/A	no	0.322	0.712	0.415	2e-10

>sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=2 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 128/187 (68%), Gaps = 24/187 (12%)

Query: 1   MAEAQSDKTPSLAEDYLLEKE-KQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAA 59
           MA+A + +TPSL+E Y LEKE KQD + KPVEVKEV   VT  + E  T           
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKT----------- 49

Query: 60  VEESKEDAPAPAPEESTEASSASPEDST--SDTAPAAAEESSET-------TEEENSGDQ 110
            E++KE++P        E  S S  +ST  +  APAAAE+++E          +EN+  +
Sbjct: 50  -EQAKEESPVEEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENAS-E 107

Query: 111 EASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRA 169
           E +EETPD IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKG+ APECDKFAK+YR+
Sbjct: 108 EVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRS 167

Query: 170 LCPSDWV 176
           LCPS+WV
Sbjct: 168 LCPSEWV 174

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 54/59 (91%)

Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           +I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE A EC++FAKYYRALCP +WV
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1

 Score =  109 bits (273), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 54/59 (91%)

Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           +I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE + +C++FAKYYRALCP +WV
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 109 DQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR 168
           DQEA ++       T   D RFP TNQT+HCF  YI+Y RC+ AKGE    C +F   Y+
Sbjct: 6   DQEAPKQ---FTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQ 62

Query: 169 ALCPSDWV 176
           +LCP +WV
Sbjct: 63  SLCPMEWV 70

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%)

Query: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           L T   D RFP  NQT+HC+  Y++YH+CV  KGE    C  F K Y ALCP DW+
Sbjct: 9   LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWI 64

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9LPJ2|CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana GN=At1g32710 PE=3 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%)

Query: 129 RFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           RFP TN+TRHCF R+++YH+C+   G  A +C+    Y R++CP + V
Sbjct: 64  RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELV 111

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
           ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LC
Sbjct: 6   ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65

Query: 172 PSDWV 176
           P+ WV
Sbjct: 66  PTSWV 70

Connects the two COX monomers into the physiological dimeric form.

Homo sapiens (taxid: 9606)

>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
           ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LC
Sbjct: 6   ETKLKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65

Query: 172 PSDWV 176
           P+ WV
Sbjct: 66  PTSWV 70

Connects the two COX monomers into the physiological dimeric form.

Pongo abelii (taxid: 9601)

>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3 SV=3

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
           ET     +TAP D RFP  NQTR+C+  Y+++HRC   +  KG     C+ + + Y++LC
Sbjct: 7   ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLC 66

Query: 172 PSDWV 176
           P+ WV
Sbjct: 67  PTSWV 71

Connects the two COX monomers into the physiological dimeric form.

Macaca mulatta (taxid: 9544)

>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1 PE=3 SV=3

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
           ET     +TAP D RFP  NQTR+C+  Y+++HRC   +  KG     C+ + + Y++LC
Sbjct: 7   ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLC 66

Query: 172 PSDWV 176
           P+ WV
Sbjct: 67  PTSWV 71

Connects the two COX monomers into the physiological dimeric form.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
118488086	183	unknown [Populus trichocarpa]	0.838	0.879	0.682	8e-46
356552918	175	PREDICTED: cytochrome c oxidase subunit	0.812	0.891	0.603	9e-46
255545796	191	cytochrome C oxidase polypeptide vib, pu	0.864	0.869	0.652	9e-46
351734496	174	uncharacterized protein LOC100306272 [Gl	0.807	0.890	0.597	1e-43
449469835	195	PREDICTED: cytochrome c oxidase subunit	0.890	0.876	0.576	2e-43
388508352	177	unknown [Lotus japonicus]	0.812	0.881	0.569	5e-41
15219886	191	cytochrome C oxidase 6B [Arabidopsis tha	0.848	0.853	0.556	1e-40
21554378	191	cytochrome c oxidase subunit, putative [	0.848	0.853	0.550	2e-40
297845268	192	hypothetical protein ARALYDRAFT_889753 [	0.859	0.859	0.612	5e-39
357489749	183	Subunit 6b of cytochrome c oxidase [Medi	0.786	0.825	0.549	6e-38

>gi|118488086|gb|ABK95863.1| unknown [Populus trichocarpa]

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 135/170 (79%), Gaps = 9/170 (5%)

Query: 9   TPSLAEDYLLE--KEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKED 66
           TP+L+E Y L+  +EK DV +KPVEVKE E   TA S E A +K EETP  AA EE  ED
Sbjct: 5   TPTLSERYELKGKEEKTDVVSKPVEVKEEEKPATAVSEE-AVEKAEETPPLAA-EEKTED 62

Query: 67  APAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETAPA 126
            PA A EESTEA +   ++S+S+ APAAAEE+SE TEE NSG++ A E+  +IKLETAPA
Sbjct: 63  TPAAA-EESTEAPTT--DESSSEDAPAAAEETSEGTEE-NSGEEAAEEKK-EIKLETAPA 117

Query: 127 DFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           D+RFPTTNQTRHCFTRYIEYHRCVAAKGEGA ECDKFAKYYR+LCPS+WV
Sbjct: 118 DYRFPTTNQTRHCFTRYIEYHRCVAAKGEGASECDKFAKYYRSLCPSEWV 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552918|ref|XP_003544809.1| PREDICTED: cytochrome c oxidase subunit 6b-1-like [Glycine max]

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 127/179 (70%), Gaps = 23/179 (12%)

Query: 1   MAEAQSDKTPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDK-VEET-PAAA 58
           MAE   DK+ SLAE+Y ++ ++  V  KPVEVKEVE+   A+S E   +K VEET P A 
Sbjct: 1   MAETAVDKSQSLAEEYYVKDKQTAVVEKPVEVKEVENPEEAASEEPVAEKTVEETTPVAP 60

Query: 59  AV-EESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETP 117
           AV +ES E  P PA EESTE                   E S    EENSG+++A+EETP
Sbjct: 61  AVAQESSEVTPPPA-EESTE-------------------EQSSGNVEENSGNEDAAEETP 100

Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           +IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKGEGAPECDKFAKYYR+LCP +W+
Sbjct: 101 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEGAPECDKFAKYYRSLCPGEWI 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545796|ref|XP_002513958.1| cytochrome C oxidase polypeptide vib, putative [Ricinus communis] gi|223547044|gb|EEF48541.1| cytochrome C oxidase polypeptide vib, putative [Ricinus communis]

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 111/170 (65%), Positives = 132/170 (77%), Gaps = 4/170 (2%)

Query: 9   TPSLAEDYLLE--KEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKED 66
           TPSL+E YLL+  +EK DV  KPVEVKE     T  SV+ A  K EE PAAAA E++++ 
Sbjct: 8   TPSLSEQYLLKDKEEKPDVGPKPVEVKEDVKPETIVSVDAAVVKAEEEPAAAAEEKAEDT 67

Query: 67  APAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETAPA 126
           A   A EEST  + A+  +S+S+  PA   ESSETTEE+NS +QEA+EETP IKLETAPA
Sbjct: 68  AGGGATEESTITNPAA--ESSSEDTPAVDTESSETTEEQNSTEQEAAEETPKIKLETAPA 125

Query: 127 DFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           DFRFPTTNQTRHCFTRY+EYHRC AAKGEGAPECDKFAK+YR+LCP +W+
Sbjct: 126 DFRFPTTNQTRHCFTRYVEYHRCTAAKGEGAPECDKFAKFYRSLCPGEWI 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734496|ref|NP_001236320.1| uncharacterized protein LOC100306272 [Glycine max] gi|255628065|gb|ACU14377.1| unknown [Glycine max]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 124/179 (69%), Gaps = 24/179 (13%)

Query: 1   MAEAQSDKTPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDK-VEET-PAAA 58
           MAE  +DK+ SLAE+Y +  ++  V  K VEVKEVE+   A+S E   +K VEET P A 
Sbjct: 1   MAET-ADKSQSLAEEYYVNDKQTTVVEKAVEVKEVENPKVAASEEPVAEKTVEETTPVAP 59

Query: 59  AV-EESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETP 117
           AV +ES E  P P  EESTE                   E S    EENSG+++ +EETP
Sbjct: 60  AVAQESSEVTPPPT-EESTE-------------------EQSSGNVEENSGNEDVAEETP 99

Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           +IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR+LCP +WV
Sbjct: 100 EIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRSLCPGEWV 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469835|ref|XP_004152624.1| PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis sativus] gi|449503913|ref|XP_004162224.1| PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis sativus]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 133/184 (72%), Gaps = 13/184 (7%)

Query: 1   MAEAQSDKTPSLAEDY-LLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAA 59
           MAEAQS +TPSL+E Y L EKE++    +P EVKEVE++  A+  E    K +E P  A 
Sbjct: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVV-KNDEPPVEAV 59

Query: 60  VEESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEE-------NSGDQEA 112
            ++S  D P PA E + ++S+A+ EDS  +T+PAA  +S    EE        NSGDQE+
Sbjct: 60  ADQSS-DIP-PAEESNGDSSAAAVEDS--ETSPAAENDSGAAEEESSGAGEEENSGDQES 115

Query: 113 SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCP 172
           ++E P+IKLETAP DFRFPTTNQTRHCFTRYIE+HRC  AKGEGAPEC+KFAKYYR+LCP
Sbjct: 116 TDERPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCP 175

Query: 173 SDWV 176
           S+WV
Sbjct: 176 SEWV 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508352|gb|AFK42242.1| unknown [Lotus japonicus]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 121/181 (66%), Gaps = 25/181 (13%)

Query: 1   MAEAQSDKTPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSV---EGATDK-VEET-P 55
           MAE   + +P+LAE Y + K+KQ+      +  EV+   T   V   E   +K VEET P
Sbjct: 1   MAEPAVENSPTLAEQYYV-KDKQEEKVVVEKPVEVKEVETPKEVAPEETVVEKTVEETTP 59

Query: 56  AAAAVEESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEE 115
            A AV E   + P P+ EESTE                   ++SE+ EEENSGDQEA+EE
Sbjct: 60  VAPAVVEESSEVP-PSAEESTEV------------------QTSESVEEENSGDQEAAEE 100

Query: 116 TPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDW 175
           TP+IKLETAP DFRFPTTNQTRHCFTRYIEYHRCVAAKG+GAPECDKFAKYYRALCP +W
Sbjct: 101 TPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEW 160

Query: 176 V 176
           V
Sbjct: 161 V 161

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219886|ref|NP_173661.1| cytochrome C oxidase 6B [Arabidopsis thaliana] gi|75193983|sp|Q9S7L9.1|CX6B1_ARATH RecName: Full=Cytochrome c oxidase subunit 6b-1; Short=AtCOX6b-1 gi|6587843|gb|AAF18532.1|AC006551_18 Subunit 6b of cytochrome c oxidase [Arabidopsis thaliana] gi|6518353|dbj|BAA87883.1| subunit 6b of cytochrome c oxidase [Arabidopsis thaliana] gi|17381082|gb|AAL36353.1| putative cytochrome c oxidase subunit [Arabidopsis thaliana] gi|20465723|gb|AAM20330.1| putative cytochrome c oxidase subunit [Arabidopsis thaliana] gi|332192122|gb|AEE30243.1| cytochrome C oxidase 6B [Arabidopsis thaliana]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 128/187 (68%), Gaps = 24/187 (12%)

Query: 1   MAEAQSDKTPSLAEDYLLEKE-KQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAA 59
           MA+A + +TPSL+E Y LEKE KQD + KPVEVKEV   VT  + E  T           
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKT----------- 49

Query: 60  VEESKEDAPAPAPEESTEASSASPEDST--SDTAPAAAEESSET-------TEEENSGDQ 110
            E++KE++P        E  S S  +ST  +  APAAAE+++E          +EN+  +
Sbjct: 50  -EQAKEESPVEEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENAS-E 107

Query: 111 EASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRA 169
           E +EETPD IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKG+ APECDKFAK+YR+
Sbjct: 108 EVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRS 167

Query: 170 LCPSDWV 176
           LCPS+WV
Sbjct: 168 LCPSEWV 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554378|gb|AAM63485.1| cytochrome c oxidase subunit, putative [Arabidopsis thaliana]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 128/187 (68%), Gaps = 24/187 (12%)

Query: 1   MAEAQSDKTPSLAEDYLLEKE-KQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAA 59
           MA+A + +TPSL+E Y LEKE KQD + KPVEVKEV   VT  + E  T           
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKT----------- 49

Query: 60  VEESKEDAPAPAPEESTEASSASPEDST--SDTAPAAAEESSET-------TEEENSGDQ 110
            E++KE++P        E  S S  +ST  +  APAAA++++E          +EN+  +
Sbjct: 50  -EQAKEESPVEEAVSVVEEKSESAPESTEVASEAPAAAQDNAEETPAAAEENNDENAS-E 107

Query: 111 EASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRA 169
           E +EETPD IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKG+ APECDKFAK+YR+
Sbjct: 108 EVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRS 167

Query: 170 LCPSDWV 176
           LCPS+WV
Sbjct: 168 LCPSEWV 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845268|ref|XP_002890515.1| hypothetical protein ARALYDRAFT_889753 [Arabidopsis lyrata subsp. lyrata] gi|297336357|gb|EFH66774.1| hypothetical protein ARALYDRAFT_889753 [Arabidopsis lyrata subsp. lyrata]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 131/186 (70%), Gaps = 21/186 (11%)

Query: 1   MAEAQSDKTPSLAEDYLLEKE-KQDVATKPVEVKEVESAVTASSVEGATDKV-EETP--- 55
           MAEA + +TPSL+E Y LEKE KQD + KPVEVKEV   VT  + E  TD+  EE+P   
Sbjct: 1   MAEAVTAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVVPEVTTQAEEVTTDQTKEESPVEE 60

Query: 56  AAAAVEESKEDAPAPAPEESTEASSASPEDSTSD----TAPAAAEESSETTEEENSGDQE 111
           A +AVEE  E AP     ESTE +S +P  +  D    T PA  E + E T EE      
Sbjct: 61  AVSAVEEKSESAP-----ESTEVTSEAPAAAAEDNAEETPPAIEENNDENTSEE------ 109

Query: 112 ASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRAL 170
            +EETPD IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKG+ APECDKFAK+YR+L
Sbjct: 110 VAEETPDEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGDDAPECDKFAKFYRSL 169

Query: 171 CPSDWV 176
           CPS+WV
Sbjct: 170 CPSEWV 175

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489749|ref|XP_003615162.1| Subunit 6b of cytochrome c oxidase [Medicago truncatula] gi|355516497|gb|AES98120.1| Subunit 6b of cytochrome c oxidase [Medicago truncatula] gi|388493660|gb|AFK34896.1| unknown [Medicago truncatula]

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 95/173 (54%), Positives = 115/173 (66%), Gaps = 22/173 (12%)

Query: 11  SLAEDYLLE--KEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAP 68
           +LAE+Y ++  +EK++VA KPV V   E  V    VE      E TP  A VE++ E+  
Sbjct: 10  TLAEEYYVKDKQEKKEVAEKPVAV---EKPVAVEEVEKPK---EATPVEAVVEKTVEETI 63

Query: 69  APAPEESTEASSASPEDSTSDTAPAAAEESSETTEEE-----NSGDQEASEETPDIKLET 123
             AP  + E         +S+  P AAEE+++    E     NSGDQE +EE P+IKLET
Sbjct: 64  PAAPVVAEE---------SSEVTPPAAEENAQEESSETVVEENSGDQEEAEEKPEIKLET 114

Query: 124 APADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           AP DFRFPTTNQTRHCFTRYIEYHRCVAAKG+ APECDKFAKYYRALCP +WV
Sbjct: 115 APVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDDAPECDKFAKYYRALCPGEWV 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2009497	191	COX6B "cytochrome C oxidase 6B	0.364	0.366	0.816	9.5e-42
TAIR|locus:505006698	78	AT5G57815 [Arabidopsis thalian	0.307	0.756	0.762	6.8e-24
POMBASE|SPCC1442.08c	86	cox12 "cytochrome c oxidase su	0.354	0.790	0.470	7.9e-14
FB|FBgn0031066	96	CoVIb "Cytochrome c oxidase su	0.364	0.729	0.450	1.6e-13
SGD|S000004028	83	COX12 "Subunit VIb of cytochro	0.291	0.674	0.517	7.1e-13
ZFIN|ZDB-GENE-040426-1566	86	cox6b2 "cytochrome c oxidase s	0.281	0.627	0.456	3.1e-12
ZFIN|ZDB-GENE-040718-448	86	cox6b1 "cytochrome c oxidase s	0.296	0.662	0.476	8.2e-12
UNIPROTKB|P14854	86	COX6B1 "Cytochrome c oxidase s	0.322	0.720	0.430	1.7e-11
ASPGD|ASPL0000002106	84	AN6255 [Emericella nidulans (t	0.255	0.583	0.510	2.2e-11
TAIR|locus:2035624	134	AT1G32710 [Arabidopsis thalian	0.286	0.410	0.446	2.2e-11

TAIR|locus:2009497 COX6B "cytochrome C oxidase 6B" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 58/71 (81%), Positives = 66/71 (92%)

Query:   107 SGDQEASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAK 165
             +  +E +EETPD IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKG+ APECDKFAK
Sbjct:   104 NASEEVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAK 163

Query:   166 YYRALCPSDWV 176
             +YR+LCPS+WV
Sbjct:   164 FYRSLCPSEWV 174

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:505006698 AT5G57815 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 45/59 (76%), Positives = 54/59 (91%)

Query:   118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
             +I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE + +C++FAKYYRALCP +WV
Sbjct:     4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

POMBASE|SPCC1442.08c cox12 "cytochrome c oxidase subunit VIb (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 32/68 (47%), Positives = 40/68 (58%)

Query:   109 DQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR 168
             +QE  E        T   D RFP TNQT+HCF  YI+Y RC+ AKGE    C +F   Y+
Sbjct:     3 EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQ 62

Query:   169 ALCPSDWV 176
             +LCP +WV
Sbjct:    63 SLCPMEWV 70

GO:0005634 "nucleus" evidence=IDA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0009060 "aerobic respiration" evidence=IC

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=ISO

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

FB|FBgn0031066 CoVIb "Cytochrome c oxidase subunit VIb" [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query:   107 SGDQEA-SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAK 165
             S D+ + S      KLETAP D RFP  N TR+C+  YI++HRC   +GE    C+ F K
Sbjct:    10 SSDKSSDSSNMSAYKLETAPFDPRFPNQNVTRYCYQSYIDFHRCQKKRGEDFAPCNYFQK 69

Query:   166 YYRALCPSDWV 176
              Y+++CP+ WV
Sbjct:    70 VYKSMCPNAWV 80

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

SGD|S000004028 COX12 "Subunit VIb of cytochrome c oxidase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 29/56 (51%), Positives = 35/56 (62%)

Query:   121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
             L T   D RFP  NQT+HC+  Y++YH+CV  KGE    C  F K Y ALCP DW+
Sbjct:     9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWI 64

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;IDA;IPI

GO:0016021 "integral to membrane" evidence=ISM

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IPI

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

ZFIN|ZDB-GENE-040426-1566 cox6b2 "cytochrome c oxidase subunit VIb polypeptide 2" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query:   123 TAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
             TAP D RFP TNQTR+C+  Y+++HRC   +++KG+    C+ + + Y++LCP  WV
Sbjct:    14 TAPFDARFPNTNQTRNCYQNYLDFHRCNKALSSKGQDTSPCEWYQRVYKSLCPISWV 70

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-040718-448 cox6b1 "cytochrome c oxidase subunit VIb polypeptide 1" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 30/63 (47%), Positives = 40/63 (63%)

Query:   120 KLE---TAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPS 173
             KLE   TAP D RFP  NQTR+C+  Y++YHRC   + AKG     CD + + Y++LCP 
Sbjct:     8 KLENYRTAPFDARFPNQNQTRNCWQNYLDYHRCQKALDAKGVDTAPCDWYKRVYKSLCPL 67

Query:   174 DWV 176
              W+
Sbjct:    68 SWI 70

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|P14854 COX6B1 "Cytochrome c oxidase subunit 6B1" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query:   115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
             ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LC
Sbjct:     6 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65

Query:   172 PSDWV 176
             P+ WV
Sbjct:    66 PTSWV 70

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000002106 AN6255 [Emericella nidulans (taxid:162425)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query:   127 DFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDW 175
             D RFP  NQT+HC+  Y++YH+CV AKGE    C +F   +R+LCP  W
Sbjct:    17 DARFPQQNQTKHCWQNYVDYHKCVNAKGEDFRPCRQFYLAFRSLCPKPW 65

GO:0006091 "generation of precursor metabolites and energy" evidence=RCA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;RCA

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

TAIR|locus:2035624 AT1G32710 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query:   122 ET-APADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
             ET A  + RFP TN+TRHCF R+++YH+C+   G  A +C+    Y R++CP + V
Sbjct:    56 ETDAAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELV 111

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7L9	CX6B1_ARATH	No assigned EC number	0.5561	0.8489	0.8534	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	COX6B	COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase; subunit 6b of cytochrome c oxidase (191 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	NDA1	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase; Internal NAD(P)H dehydrogenase [...] (510 aa)							•		0.953
	NDB2	NDB2 (NAD(P)H dehydrogenase B2); FAD binding / disulfide oxidoreductase/ oxidoreductase; NAD(P) [...] (582 aa)							•		0.927
	NDB1	NDB1 (NAD(P)H dehydrogenase B1); NADH dehydrogenase/ disulfide oxidoreductase; NAD(P)H dehydrog [...] (571 aa)							•		0.913
	NDA2	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); FAD binding / NADH dehydrogenase/ oxidoreductase; A [...] (508 aa)							•		0.909
	NDB4	NDB4 (NAD(P)H dehydrogenase B4); NADH dehydrogenase; NAD(P)H dehydrogenase B4 (NDB4); FUNCTIONS [...] (582 aa)							•		0.907
	AT1G80230	cytochrome c oxidase family protein; cytochrome c oxidase family protein; FUNCTIONS IN- cytochr [...] (171 aa)				•		•	•		0.811
	AOX1C	AOX1C; alternative oxidase; encodes an isoform of alternate oxidase. expressed in all tissues e [...] (329 aa)							•		0.790
	AHK2	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase [...] (1176 aa)					•				0.736
	EMB1467	EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron [...] (748 aa)				•			•		0.694
	AT5G14030	translocon-associated protein beta (TRAPB) family protein; translocon-associated protein beta ( [...] (195 aa)				•					0.694

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
cd00926	75	cd00926, Cyt_c_Oxidase_VIb, Cytochrome c oxidase s	1e-29
pfam02297	66	pfam02297, COX6B, Cytochrome oxidase c subunit VIb	4e-19
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	8e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.002
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.004

>gnl|CDD|238466 cd00926, Cyt_c_Oxidase_VIb, Cytochrome c oxidase subunit VIb

 Score =  103 bits (260), Expect = 1e-29
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 119 IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
             L TAP D RFP  NQT+HC+ RY++YHRC+ AKGE A  C KF + Y +LCP +W+
Sbjct: 3   GPLTTAPFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEWL 60

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex. Length = 75

>gnl|CDD|216964 pfam02297, COX6B, Cytochrome oxidase c subunit VIb

 Score = 76.6 bits (189), Expect = 4e-19
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 129 RFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
           RFP  NQ +HC+    ++ +C+   GE    C KF K Y +LCP+ WV
Sbjct: 2   RFPNQNQRKHCWQARDDFFKCLDKNGEDNSPCKKFKKNYESLCPASWV 49

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Length = 66

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 17/119 (14%)

Query: 26   ATKPVEVKEVESAVTASSVEGATDKVEET-----------------PAAAAVEESKEDAP 68
              + V     E  V A         VE T                  +  AV +   +  
Sbjct: 887  VVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHA 946

Query: 69   APAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETAPAD 127
             P  E   E +       T++   A  E  ++      +      E    ++ E APA 
Sbjct: 947  EPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005

Length = 1068

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 4/109 (3%)

Query: 23  QDVATKPVEVKEVESAVTASSVEG----ATDKVEETPAAAAVEESKEDAPAPAPEESTEA 78
           + V  +  EV +  +A +   V      +T  VEET  A    E   D    AP      
Sbjct: 331 EAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVD 390

Query: 79  SSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETAPAD 127
           + A+        A A+        E             PD      P D
Sbjct: 391 AEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGD 439

Length = 460

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 19/124 (15%), Positives = 31/124 (25%), Gaps = 5/124 (4%)

Query: 9   TPSLAEDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAP 68
            P   +     + ++      V    V +AV         + V E      V    +   
Sbjct: 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908

Query: 69  APAPEESTEASSASPEDS-----TSDTAPAAAEESSETTEEENSGDQEASEETPDIKLET 123
               E +     A+P        T      A E +          D+ A  E      E 
Sbjct: 909 VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV 968

Query: 124 APAD 127
             A+
Sbjct: 969 VVAE 972

Length = 1068

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 38  AVTASSVEGATDKVEETPAAAAVEESKEDA-PAPAPEESTEASSASPEDSTSDTAPAAAE 96
            V  +      +  +E  A + V+ +  D    PA EE++EA     +    D A  A  
Sbjct: 328 DVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQ--PGDLAGQAPA 385

Query: 97  ESSETTEEENSGDQEASEETPDIKLETAP 125
                 E  ++  +E +    +   ET P
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEP 414

Length = 460

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 30  VEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEESTEASSASPEDSTSD 89
           +EVK   S V         ++ +      A  E++E A A A EE+   ++A+     + 
Sbjct: 29  IEVKSHSSTVEEEEAR--KEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAA 86

Query: 90  TAPAAAEESSETTEEENSGDQEASEETPDIKLETAPA 126
            A AAAE ++   E+E +   EA+   P  K      
Sbjct: 87  EAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG3057	112	consensus Cytochrome c oxidase, subunit VIb/COX12	100.0
cd00926	75	Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb	100.0
PF02297	76	COX6B: Cytochrome oxidase c subunit VIb; InterPro:	99.9
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	90.45
KOG4618	74	consensus Uncharacterized conserved protein [Funct	89.83

>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]

Probab=100.00  E-value=8.1e-35  Score=228.21  Aligned_cols=76  Identities=53%  Similarity=0.932  Sum_probs=71.9

Q ss_pred             ccccCCCcccccCCCCCCCCChhHHhHHHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcChHHHHHHHHhhhccch
Q 029538          112 ASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALIT  187 (192)
Q Consensus       112 ~~~~~~~~~l~TaP~DpRFPnqNQTrhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~t  187 (192)
                      .......+.|.|+|+|+||||+|||||||++|+|||||++++|+|+.+|++|+++|+||||.+||++||+||.-||
T Consensus        31 ~~~~~~~~~l~tap~d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~SlCP~~WV~kWdeqre~G~  106 (112)
T KOG3057|consen   31 GPETPKSKLLTTAPVDARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYRSLCPGEWVEKWDEQRENGT  106 (112)
T ss_pred             ccccccccccccccccccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhCcHHHHHHHHHhhhcCC
Confidence            3355667789999999999999999999999999999999999999999999999999999999999999999887

>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb

Probab=100.00  E-value=1.6e-34  Score=211.09  Aligned_cols=72  Identities=46%  Similarity=0.844  Sum_probs=69.8

Q ss_pred             cccccCCCCCCCCChhHHhHHHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcChHHHHHHHHhhhccchhcc
Q 029538          119 IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITCML  190 (192)
Q Consensus       119 ~~l~TaP~DpRFPnqNQTrhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~tc~~  190 (192)
                      +.++|+|+||||||+|||+|||++|++||||++++|+|.++|++|++.|+++||.+||++||+||..||+-+
T Consensus         3 ~~~~t~~~D~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~es~Cp~~Wve~w~ekR~~g~f~~   74 (75)
T cd00926           3 GPLTTAPFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEWLEKWDEQREEGTFPG   74 (75)
T ss_pred             ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCCC
Confidence            569999999999999999999999999999999999999999999999999999999999999999999865

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.

>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1

Probab=99.90  E-value=1.1e-24  Score=157.74  Aligned_cols=59  Identities=32%  Similarity=0.735  Sum_probs=50.3

Q ss_pred             CCCCChhHHhHHHHhhhhHHHhHhhcCC---------ChhhHHHHHHHHHhcChHHHHHHHHhhhccc
Q 029538          128 FRFPTTNQTRHCFTRYIEYHRCVAAKGE---------GAPECDKFAKYYRALCPSDWVCFTKASCALI  186 (192)
Q Consensus       128 pRFPnqNQTrhCwq~Y~DYhRClkekGE---------D~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~  186 (192)
                      ||||++|||++||++||+||+|++.+|.         +...|.+|++.|+++||.+||+|||++|.+.
T Consensus         1 ~rfP~~~~r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~sWv~~f~~~R~~~   68 (76)
T PF02297_consen    1 PRFPNRNQRKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPSSWVKYFDEKRVYD   68 (76)
T ss_dssp             -TS-SSB-HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-HHHHHHHHHH----
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcHHHHHHHHHHhhHH
Confidence            7999999999999999999999999998         8999999999999999999999999998764

9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=90.45  E-value=0.22  Score=30.54  Aligned_cols=31  Identities=23%  Similarity=0.436  Sum_probs=26.4

Q ss_pred             HHHhhhhHHHhHhhcCCChhhHHHHHHHHHh
Q 029538          139 CFTRYIEYHRCVAAKGEGAPECDKFAKYYRA  169 (192)
Q Consensus       139 Cwq~Y~DYhRClkekGED~~~Ck~frk~Y~S  169 (192)
                      |-.-+..|+.|++.++.+...|..+.+.|+.
T Consensus         1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~   31 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKE   31 (35)
T ss_dssp             THHHHHHHHHHHHCH-SSTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHH
Confidence            4556788999999999999999999999984

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>KOG4618 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.83  E-value=0.54  Score=35.43  Aligned_cols=47  Identities=13%  Similarity=0.374  Sum_probs=42.1

Q ss_pred             hHHHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcChHHHHHHHHhhhc
Q 029538          137 RHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCA  184 (192)
Q Consensus       137 rhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~  184 (192)
                      .-|...+.-=.+|+.++|-|-+.|+.++..|+ -|-..|.+-=.++|.
T Consensus        22 nPCl~es~aSfkCLeennyDRsKCq~yFd~Yk-eCKkfwn~ar~errk   68 (74)
T KOG4618|consen   22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYK-ECKKFWNEARLERRK   68 (74)
T ss_pred             ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence            45999999999999999999999999999999 899999887777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
2y69_H	86	Bovine Heart Cytochrome C Oxidase Re-Refined With M		7e-11
1occ_H	85	Structure Of Bovine Heart Cytochrome C Oxidase At T		8e-11

>pdb|2Y69|H Chain H, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 86

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
           +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP  WV
Sbjct: 13  QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV 70

>pdb|1OCC|H Chain H, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 85

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
           +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP  WV
Sbjct: 12  QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV 69
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1v54_H	85	AED, cytochrome C oxidase polypeptide VIB; oxidore	2e-26

>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ... Length = 85

 Score = 95.8 bits (238), Expect = 2e-26
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 113 SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRA 169
             +      +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++
Sbjct: 3   DIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62

Query: 170 LCPSDWV 176
           LCP  WV
Sbjct: 63  LCPISWV 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1v54_H	85	AED, cytochrome C oxidase polypeptide VIB; oxidore	100.0
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	94.54
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	86.0
2lql_A	113	Coiled-coil-helix-coiled-coil-helix domain-contai	82.72

>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...

Probab=100.00  E-value=3.4e-35  Score=218.49  Aligned_cols=72  Identities=39%  Similarity=0.763  Sum_probs=67.7

Q ss_pred             CCCcccccCCCCCCCCChhHHhHHHHhhhhHHHhHhh---cCCChhhHHHHHHHHHhcChHHHHHHHHhhhccch
Q 029538          116 TPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWVCFTKASCALIT  187 (192)
Q Consensus       116 ~~~~~l~TaP~DpRFPnqNQTrhCwq~Y~DYhRClke---kGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~t  187 (192)
                      .+..+|+|+|+||||||+|||+|||++|++||||++.   +|+|.++|++|++.|+||||.+||++||+||.+||
T Consensus         6 ~~~~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~   80 (85)
T 1v54_H            6 AKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGT   80 (85)
T ss_dssp             -CCCCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTC
T ss_pred             ccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCC
Confidence            4556799999999999999999999999999999665   99999999999999999999999999999999997

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=94.54  E-value=0.031  Score=41.83  Aligned_cols=49  Identities=14%  Similarity=0.327  Sum_probs=43.0

Q ss_pred             hHHHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcChHHHHHHHHhhhccc
Q 029538          137 RHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALI  186 (192)
Q Consensus       137 rhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~  186 (192)
                      .-|...+..=.+|+..++.|...|..|+..|+ .|=..|++.=-++|.-|
T Consensus        14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk-~CKk~W~~v~~eRRr~G   62 (85)
T 2lqt_A           14 NPCLSESDASTRCLDENNYDRERCSTYFLRYK-NCRRFWNSIVMQRRKNG   62 (85)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHH-HHHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence            34999999999999999999999999999999 79999998766666544

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=86.00  E-value=0.49  Score=30.03  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             HHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcC
Q 029538          139 CFTRYIEYHRCVAAKGEGAPECDKFAKYYRALC  171 (192)
Q Consensus       139 Cwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLC  171 (192)
                      |-..--.|.+|+..+|-|.+.|+.+...|+.-|
T Consensus         3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc   35 (38)
T 1ei0_A            3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA   35 (38)
T ss_dssp             SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            555667899999999999999999999988544

>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}

Probab=82.72  E-value=0.53  Score=35.94  Aligned_cols=36  Identities=8%  Similarity=0.404  Sum_probs=32.0

Q ss_pred             hhHHhHHHHhhhhHHHhHhhcCCChhhHHHHHHHHH
Q 029538          133 TNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR  168 (192)
Q Consensus       133 qNQTrhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~  168 (192)
                      +.-.++|-.-+..||.|++.+..+...|....+.|.
T Consensus        55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~   90 (113)
T 2lql_A           55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFL   90 (113)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            455789999999999999999999999998888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1v54h_	79	a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow	1e-29

>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]} Length = 79

class: All alpha proteins
fold: Cytochrome c oxidase subunit h
superfamily: Cytochrome c oxidase subunit h
family: Cytochrome c oxidase subunit h
domain: Cytochrome c oxidase subunit h
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (256), Expect = 1e-29
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 120 KLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
             +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP  WV
Sbjct: 4   NYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1v54h_	79	Cytochrome c oxidase subunit h {Cow (Bos taurus) [	100.0

>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c oxidase subunit h
superfamily: Cytochrome c oxidase subunit h
family: Cytochrome c oxidase subunit h
domain: Cytochrome c oxidase subunit h
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-38  Score=229.78  Aligned_cols=69  Identities=41%  Similarity=0.821  Sum_probs=65.7

Q ss_pred             ccccCCCCCCCCChhHHhHHHHhhhhHHHhHh---hcCCChhhHHHHHHHHHhcChHHHHHHHHhhhccchh
Q 029538          120 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEGAPECDKFAKYYRALCPSDWVCFTKASCALITC  188 (192)
Q Consensus       120 ~l~TaP~DpRFPnqNQTrhCwq~Y~DYhRClk---ekGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~tc  188 (192)
                      +++|+|||+||||+|||||||++|+|||||.+   .+|+|+.+|++|++.|+||||++||++||+||.-||=
T Consensus         4 ~~~TaP~D~RFPn~NQTrhC~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~sLCP~~WiekWdeqr~~GtF   75 (79)
T d1v54h_           4 NYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTF   75 (79)
T ss_dssp             CCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCC
T ss_pred             cccCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            59999999999999999999999999999954   6799999999999999999999999999999999873