Citrus Sinensis ID: 029540
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 192 | 2.2.26 [Sep-21-2011] | |||||||
| Q7CPQ7 | 284 | D-tagatose-1,6-bisphospha | yes | no | 0.958 | 0.647 | 0.422 | 4e-32 | |
| Q8XGZ9 | 284 | D-tagatose-1,6-bisphospha | N/A | no | 0.958 | 0.647 | 0.422 | 4e-32 | |
| A9N6Z8 | 284 | D-tagatose-1,6-bisphospha | yes | no | 0.958 | 0.647 | 0.422 | 5e-32 | |
| A7ZAH2 | 290 | 6-phospho-5-dehydro-2-deo | yes | no | 0.958 | 0.634 | 0.431 | 7e-32 | |
| P42420 | 290 | 6-phospho-5-dehydro-2-deo | yes | no | 0.958 | 0.634 | 0.421 | 8e-32 | |
| B5BGG5 | 284 | D-tagatose-1,6-bisphospha | yes | no | 0.958 | 0.647 | 0.417 | 3e-31 | |
| Q5PL86 | 284 | D-tagatose-1,6-bisphospha | yes | no | 0.958 | 0.647 | 0.417 | 3e-31 | |
| B4TWB0 | 284 | D-tagatose-1,6-bisphospha | yes | no | 0.958 | 0.647 | 0.417 | 8e-30 | |
| A6TEF4 | 284 | D-tagatose-1,6-bisphospha | yes | no | 0.942 | 0.637 | 0.429 | 3e-29 | |
| Q65D09 | 292 | 6-phospho-5-dehydro-2-deo | no | no | 0.958 | 0.630 | 0.411 | 4e-29 |
| >sp|Q7CPQ7|GATY_SALTY D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gatY PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 10/194 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
++ G S+M+DGSH PF++N++ K + H VEAELGRL G ED L V+ +A
Sbjct: 94 VMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDAL 153
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
T+ QA EF+ T ID+LAV IG HG Y ++ P L + L ++ AL + LVLHG
Sbjct: 154 YTNPQQAREFVARTGIDSLAVAIGTAHGMY-AAEPKLDFERLAEIRALVD---IPLVLHG 209
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS-----LSRPKS-DLIHLMASAKEAMKA 177
ASGL I+ I GV K NV TE++ A+ D+ L PK+ D H M AK+AMK
Sbjct: 210 ASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKE 269
Query: 178 VVAEKMRLFGSSGK 191
VV + + + G G+
Sbjct: 270 VVRKVIHVCGCEGQ 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 4EC: .EC: 1EC: .EC: 2EC: .EC: 4EC: 0 |
| >sp|Q8XGZ9|GATY_SALTI D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Salmonella typhi GN=gatY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 10/194 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
++ G S+M+DGSH PF++N++ K + H VEAELGRL G ED L V+ +A
Sbjct: 94 VMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDAL 153
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
T+ QA EF+ T ID+LAV IG HG Y ++ P L + L ++ AL + LVLHG
Sbjct: 154 YTNPQQAREFVARTGIDSLAVAIGTAHGMY-AAEPKLDFERLAEIRALVD---IPLVLHG 209
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS-----LSRPKS-DLIHLMASAKEAMKA 177
ASGL I+ I GV K NV TE++ A+ D+ L PK+ D H M AK+AMK
Sbjct: 210 ASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKE 269
Query: 178 VVAEKMRLFGSSGK 191
VV + + + G G+
Sbjct: 270 VVRKVIHVCGCEGQ 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Salmonella typhi (taxid: 90370) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 0 |
| >sp|A9N6Z8|GATY_SALPB D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gatY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 10/194 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
++ G S+M+DGSH PF++N++ K + H VEAELGRL G ED L V+ +A
Sbjct: 94 VMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDAL 153
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
T+ QA EF+ T ID+LAV IG HG Y ++ P L + L ++ AL + LVLHG
Sbjct: 154 YTNPQQAREFVAHTGIDSLAVAIGTAHGMY-AAEPKLDFERLAEIRALVD---IPLVLHG 209
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS-----LSRPKS-DLIHLMASAKEAMKA 177
ASGL I+ I GV K NV TE++ A+ D+ L PK+ D H M AK+AMK
Sbjct: 210 ASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKE 269
Query: 178 VVAEKMRLFGSSGK 191
VV + + + G G+
Sbjct: 270 VVRKVIHVCGCEGQ 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 0 |
| >sp|A7ZAH2|IOLJ_BACA2 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase OS=Bacillus amyloliquefaciens (strain FZB42) GN=iolJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+AI GF S+M+DGSH P +NI+ TK ++ A G+ VEAE+G + G EDGL
Sbjct: 95 QAIDAGFSSVMIDGSHHPIDENIAMTKEVADYAAKHGVSVEAEVGTVGGMEDGLV---GG 151
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
+ DV + E + ET+IDALA +G+VHGKY PNL K++ A+S + LVL
Sbjct: 152 VRYADVAECERIVKETNIDALAAALGSVHGKYQGE-PNLG---FKEMEAISRMTDIPLVL 207
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLIH---LMASAKEAM 175
HGASG+ E IK I G K N+NTE A+ D R DL M EA+
Sbjct: 208 HGASGIPQEQIKKAITLGHAKININTECMVAWTDETRRMFQKNGDLYEPRGYMTPGIEAV 267
Query: 176 KAVVAEKMRLFGSSGKA 192
+ V KMR FGS+GKA
Sbjct: 268 EETVRSKMREFGSAGKA 284
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Produces dihydroxyacetone phosphate (DHAP or glycerone phosphate) and malonic semialdehyde (MSA or 3-oxopropanoate) from 6-phospho-5-dehydro-2-deoxy-D-gluconate (DKGP). Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 9 |
| >sp|P42420|IOLJ_BACSU 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase OS=Bacillus subtilis (strain 168) GN=iolJ PE=1 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 112/197 (56%), Gaps = 13/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+AI GF S+M+DGSH P +NI+ TK ++ A G+ VEAE+G + G EDGL
Sbjct: 95 QAIDAGFSSVMIDGSHQPIDENIAMTKEVTDYAAKHGVSVEAEVGTVGGMEDGLV---GG 151
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
+ D+ + E + ET+IDALA +G+VHGKY PNL K++ A+S + LVL
Sbjct: 152 VRYADITECERIVKETNIDALAAALGSVHGKYQGE-PNLG---FKEMEAISRMTDIPLVL 207
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLIH---LMASAKEAM 175
HGASG+ + IK I G K N+NTE A+ D R SDL + EA+
Sbjct: 208 HGASGIPQDQIKKAITLGHAKININTECMVAWTDETRRMFQENSDLYEPRGYLTPGIEAV 267
Query: 176 KAVVAEKMRLFGSSGKA 192
+ V KMR FGS+GKA
Sbjct: 268 EETVRSKMREFGSAGKA 284
|
Produces dihydroxyacetone phosphate (DHAP or glycerone phosphate) and malonic semialdehyde (MSA or 3-oxopropanoate) from 6-phospho-5-dehydro-2-deoxy-D-gluconate (DKGP). Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 9 |
| >sp|B5BGG5|GATY_SALPK D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Salmonella paratyphi A (strain AKU_12601) GN=gatY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 10/194 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
++ G S+M+DGSH PF++N++ K + H VEAELGRL G ED L V+ +A
Sbjct: 94 VMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDAL 153
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
T+ QA EF+ T ID+LAV IG H Y ++ P L + L ++ AL + LVLHG
Sbjct: 154 YTNPQQAREFVARTGIDSLAVAIGTAHCMY-AAEPKLDFERLAEIRALVD---IPLVLHG 209
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS-----LSRPKS-DLIHLMASAKEAMKA 177
ASGL I+ I GV K NV TE++ A+ D+ L PK+ D H M AK+AMK
Sbjct: 210 ASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKE 269
Query: 178 VVAEKMRLFGSSGK 191
VV + + + G G+
Sbjct: 270 VVRKVIHVCGCEGQ 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Salmonella paratyphi A (strain AKU_12601) (taxid: 554290) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 0 |
| >sp|Q5PL86|GATY_SALPA D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=gatY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 10/194 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
++ G S+M+DGSH PF++N++ K + H VEAELGRL G ED L V+ +A
Sbjct: 94 VMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDAL 153
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
T+ QA EF+ T ID+LAV IG H Y ++ P L + L ++ AL + LVLHG
Sbjct: 154 YTNPQQAREFVARTGIDSLAVAIGTAHCMY-AAEPKLDFERLAEIRALVD---IPLVLHG 209
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS-----LSRPKS-DLIHLMASAKEAMKA 177
ASGL I+ I GV K NV TE++ A+ D+ L PK+ D H M AK+AMK
Sbjct: 210 ASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKE 269
Query: 178 VVAEKMRLFGSSGK 191
VV + + + G G+
Sbjct: 270 VVRKVIHVCGCEGQ 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Salmonella paratyphi A (strain ATCC 9150 / SARB42) (taxid: 295319) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 0 |
| >sp|B4TWB0|GATY_SALSV D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Salmonella schwarzengrund (strain CVM19633) GN=gatY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 107/194 (55%), Gaps = 10/194 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
+ G S+M+DGSH PF DNI+ K + H + VEAELGRL G ED L V+ +A
Sbjct: 94 VAAGVRSVMIDGSHFPFADNIALVKSVVDYCHRYDVSVEAELGRLGGQEDDLIVDGKDAL 153
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
T QA EF+++T ID+LA+ IG HG Y ++ P L + L ++ + V LVLHG
Sbjct: 154 YTHPEQAREFVEKTGIDSLAIAIGTAHGLY-TAEPKLDFERLTEIR---QRVDVPLVLHG 209
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR------PKSDLIHLMASAKEAMKA 177
ASGL I I G+ K NV TE++ A+ D+L SD H M AK AMK
Sbjct: 210 ASGLPTRDITRAISLGICKVNVATELKIAFSDALKNYLTQHAEASDPRHYMIPAKAAMKE 269
Query: 178 VVAEKMRLFGSSGK 191
VV + + G GK
Sbjct: 270 VVRKVIADCGCEGK 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Salmonella schwarzengrund (strain CVM19633) (taxid: 439843) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 0 |
| >sp|A6TEF4|GATY_KLEP7 D-tagatose-1,6-bisphosphate aldolase subunit GatY OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gatY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
G S+M+DGSH PF++N++ K + L+H VEAELGRL G ED L V+ +A T+
Sbjct: 97 GIRSVMIDGSHSPFEENVALVKSVVELSHRYDASVEAELGRLGGVEDDLVVDAKDALYTN 156
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126
QA EF+ T ID+LAV IG HG Y ++ P L + L A+ V LVLHGASG
Sbjct: 157 PEQAREFVARTGIDSLAVAIGTAHGLY-TAEPKLDFERLA---AIRDCVDVPLVLHGASG 212
Query: 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDS-----LSRP-KSDLIHLMASAKEAMKAVVA 180
L I+ I GV K NV TE++ A+ D+ L P +D H M AK AMK VV
Sbjct: 213 LPDSDIRRAISLGVCKVNVATELKIAFSDALKAYFLENPGANDPRHYMKPAKAAMKEVVR 272
Query: 181 EKMRLFGSSGK 191
+ + + G G+
Sbjct: 273 KVIHVCGCEGQ 283
|
Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol. Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 0 |
| >sp|Q65D09|IOLJ_BACLD 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=iolJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 109/197 (55%), Gaps = 13/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+AI GF S+M+DGSH P +NI+ TK + A + + VEAE+G + G EDGL
Sbjct: 95 QAIDAGFSSVMIDGSHSPIDENIAMTKEVVSYAGVRNVSVEAEVGTVGGMEDGLI---GG 151
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
+ D+ + E + ET IDALA +G+VHGKY PNL K++ +S + LVL
Sbjct: 152 VQYADIGECERIVKETGIDALAAALGSVHGKYQGE-PNLG---FKEMEEISRVTDIPLVL 207
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMD---SLSRPKSDLIH---LMASAKEAM 175
HGASG+ A+ I I G K N+NTE A+ + S+ + DL M A+
Sbjct: 208 HGASGIPADQIARTIRLGHAKININTECMVAWTEKTRSIFKDNPDLYEPRAYMTPGISAV 267
Query: 176 KAVVAEKMRLFGSSGKA 192
K V KMR FGSSGKA
Sbjct: 268 KETVKHKMREFGSSGKA 284
|
Produces dihydroxyacetone phosphate (DHAP or glycerone phosphate) and malonic semialdehyde (MSA or 3-oxopropanoate) from 6-phospho-5-dehydro-2-deoxy-D-gluconate (DKGP). Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 192 | ||||||
| 224135593 | 617 | predicted protein [Populus trichocarpa] | 1.0 | 0.311 | 0.864 | 8e-91 | |
| 255579255 | 215 | Fructose-bisphosphate aldolase, putative | 1.0 | 0.893 | 0.828 | 7e-88 | |
| 297734349 | 1509 | unnamed protein product [Vitis vinifera] | 1.0 | 0.127 | 0.822 | 6e-87 | |
| 359491523 | 1377 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.135 | 0.844 | 9e-87 | |
| 357499101 | 699 | D-tagatose-1,6-bisphosphate aldolase sub | 1.0 | 0.274 | 0.776 | 2e-81 | |
| 115467448 | 1376 | Os06g0258900 [Oryza sativa Japonica Grou | 1.0 | 0.139 | 0.776 | 2e-81 | |
| 218197924 | 1376 | hypothetical protein OsI_22435 [Oryza sa | 1.0 | 0.139 | 0.770 | 4e-81 | |
| 356522861 | 1376 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.139 | 0.765 | 4e-81 | |
| 326520533 | 594 | predicted protein [Hordeum vulgare subsp | 0.989 | 0.319 | 0.757 | 4e-80 | |
| 413944293 | 837 | hypothetical protein ZEAMMB73_659633 [Ze | 1.0 | 0.229 | 0.765 | 1e-79 |
| >gi|224135593|ref|XP_002322112.1| predicted protein [Populus trichocarpa] gi|222869108|gb|EEF06239.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 166/192 (86%), Positives = 177/192 (92%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EA+ LGFDSLMVDGSHL KDNI++TKYIS LAHSK MLVEAELGRLSGTED LTVEDY
Sbjct: 426 VEALDLGFDSLMVDGSHLSLKDNIAYTKYISLLAHSKNMLVEAELGRLSGTEDDLTVEDY 485
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+LTDVNQAEEFIDET IDALAVCIGNVHGKYP+SGPNL+LDLLKDLHALSSKKGV LV
Sbjct: 486 EARLTDVNQAEEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKDLHALSSKKGVFLV 545
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGLS ELIK I+RGV KFNVNTEVR AYM+SLS PK DL+H+MASAKEAMKAVVA
Sbjct: 546 LHGASGLSEELIKASIQRGVTKFNVNTEVRNAYMNSLSNPKKDLVHVMASAKEAMKAVVA 605
Query: 181 EKMRLFGSSGKA 192
EKMRLFGSSGKA
Sbjct: 606 EKMRLFGSSGKA 617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579255|ref|XP_002530473.1| Fructose-bisphosphate aldolase, putative [Ricinus communis] gi|223529970|gb|EEF31896.1| Fructose-bisphosphate aldolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 159/192 (82%), Positives = 177/192 (92%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EA+ LGFDS+MVDGSHLP KDN+S+TK+IS LAHSK MLVEAELGRLSGTED LTVEDY
Sbjct: 24 VEALDLGFDSVMVDGSHLPLKDNMSYTKFISSLAHSKNMLVEAELGRLSGTEDDLTVEDY 83
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+LTDV+QAE+FIDET IDALAVCIGNVHGKYP+SGPNL+LDLLKDLHALSSKKGV LV
Sbjct: 84 EARLTDVSQAEDFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKDLHALSSKKGVFLV 143
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASG+ EL+K CIE GVRKFNVNTEVRKAYMD+LS PK DL+ +MASAKEAMKAV+A
Sbjct: 144 LHGASGVPKELVKACIEHGVRKFNVNTEVRKAYMDALSNPKKDLVRVMASAKEAMKAVIA 203
Query: 181 EKMRLFGSSGKA 192
EKM LFGS+GKA
Sbjct: 204 EKMHLFGSAGKA 215
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734349|emb|CBI15596.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 158/192 (82%), Positives = 176/192 (91%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++ + LGFDS+MVDGSHLPFKDNIS+TKYIS LAHSK M+VEAELGRLSGTED LTVEDY
Sbjct: 1318 VDVLELGFDSVMVDGSHLPFKDNISYTKYISLLAHSKDMMVEAELGRLSGTEDDLTVEDY 1377
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EAKLTDV+QA EFIDET IDALAVCIGNVHGKYP++GPNL+LDLLK+LH L SKKGVLLV
Sbjct: 1378 EAKLTDVDQALEFIDETGIDALAVCIGNVHGKYPATGPNLRLDLLKELHNLCSKKGVLLV 1437
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGLS +LIK CIERGV KFNVNTEVRKAYM+SLS P DL+H+M++AKEAMKAVVA
Sbjct: 1438 LHGASGLSEKLIKECIERGVTKFNVNTEVRKAYMESLSSPGKDLVHVMSNAKEAMKAVVA 1497
Query: 181 EKMRLFGSSGKA 192
EKM LFGS+GKA
Sbjct: 1498 EKMHLFGSAGKA 1509
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491523|ref|XP_002278967.2| PREDICTED: uncharacterized protein LOC100262718 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 158/187 (84%), Positives = 173/187 (92%)
Query: 6 LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT 65
LGFDS+MVDGSHLPFKDNIS+TKYIS LAHSK M+VEAELGRLSGTED LTVEDYEAKLT
Sbjct: 1191 LGFDSVMVDGSHLPFKDNISYTKYISLLAHSKDMMVEAELGRLSGTEDDLTVEDYEAKLT 1250
Query: 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125
DV+QA EFIDET IDALAVCIGNVHGKYP++GPNL+LDLLK+LH L SKKGVLLVLHGAS
Sbjct: 1251 DVDQALEFIDETGIDALAVCIGNVHGKYPATGPNLRLDLLKELHNLCSKKGVLLVLHGAS 1310
Query: 126 GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRL 185
GLS +LIK CIERGV KFNVNTEVRKAYM+SLS P DL+H+M++AKEAMKAVVAEKM L
Sbjct: 1311 GLSEKLIKECIERGVTKFNVNTEVRKAYMESLSSPGKDLVHVMSNAKEAMKAVVAEKMHL 1370
Query: 186 FGSSGKA 192
FGS+GKA
Sbjct: 1371 FGSAGKA 1377
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357499101|ref|XP_003619839.1| D-tagatose-1,6-bisphosphate aldolase subunit gatY [Medicago truncatula] gi|355494854|gb|AES76057.1| D-tagatose-1,6-bisphosphate aldolase subunit gatY [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 172/192 (89%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EA+ G SLMVDGSHL F++N+ +TK+IS LAHSK MLVEAELGRLSGTED LTVE+Y
Sbjct: 508 VEALEQGVSSLMVDGSHLSFEENVKYTKFISLLAHSKDMLVEAELGRLSGTEDDLTVEEY 567
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EAKLTD+N+AE+FIDET IDALAVCIGNVHGKYP+SGP L+LDLLK+L A+S KKGVLLV
Sbjct: 568 EAKLTDINKAEKFIDETGIDALAVCIGNVHGKYPASGPKLRLDLLKELRAVSQKKGVLLV 627
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGL EL+K CI GVRKFNVNTEVRKAYMDSL+ PKSDL+++MASA++AMKAVVA
Sbjct: 628 LHGASGLGTELVKECINLGVRKFNVNTEVRKAYMDSLNTPKSDLVNVMASARDAMKAVVA 687
Query: 181 EKMRLFGSSGKA 192
EKM LFGS+GKA
Sbjct: 688 EKMHLFGSAGKA 699
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115467448|ref|NP_001057323.1| Os06g0258900 [Oryza sativa Japonica Group] gi|52077150|dbj|BAD46196.1| putative fructose/tagatose bisphosphate aldolase [Oryza sativa Japonica Group] gi|113595363|dbj|BAF19237.1| Os06g0258900 [Oryza sativa Japonica Group] gi|215695410|dbj|BAG90601.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635346|gb|EEE65478.1| hypothetical protein OsJ_20876 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 168/192 (87%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++A+ +GFDS+MVDGSHLP NI +T+ IS LAHSKGMLVEAELGRLSGTEDGLTVE+Y
Sbjct: 1185 LQALEMGFDSIMVDGSHLPLGKNILYTRSISSLAHSKGMLVEAELGRLSGTEDGLTVEEY 1244
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+ TDV QA EFIDET ID+LAVCIGNVHGKYP SGPNL+ DLL+DL AL+ KKGV LV
Sbjct: 1245 EARFTDVAQALEFIDETGIDSLAVCIGNVHGKYPPSGPNLRFDLLEDLRALTMKKGVSLV 1304
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGL EL+K CI GVRKFNVNTEVR +Y++SL RP+ DLIH+MASAKEAMKAVVA
Sbjct: 1305 LHGASGLPHELVKECIALGVRKFNVNTEVRNSYLESLKRPEKDLIHVMASAKEAMKAVVA 1364
Query: 181 EKMRLFGSSGKA 192
EKMRLFGSSGKA
Sbjct: 1365 EKMRLFGSSGKA 1376
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218197924|gb|EEC80351.1| hypothetical protein OsI_22435 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/192 (77%), Positives = 168/192 (87%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++A+ +GFDS+MVDGSHLP NI +T+ IS LAHSKGMLVEAELGRLSGTEDGLTVE+Y
Sbjct: 1185 LQALEMGFDSIMVDGSHLPLGKNILYTRSISSLAHSKGMLVEAELGRLSGTEDGLTVEEY 1244
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+ TDV QA EFIDET ID+LAVCIGNVHGKYP SGPNL+ DLL+DL AL+ KKGV LV
Sbjct: 1245 EARFTDVAQALEFIDETGIDSLAVCIGNVHGKYPPSGPNLRFDLLEDLRALTMKKGVSLV 1304
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGL EL+K C+ GVRKFNVNTEVR +Y++SL RP+ DLIH+MASAKEAMKAVVA
Sbjct: 1305 LHGASGLPHELVKECVALGVRKFNVNTEVRNSYLESLKRPEKDLIHVMASAKEAMKAVVA 1364
Query: 181 EKMRLFGSSGKA 192
EKMRLFGSSGKA
Sbjct: 1365 EKMRLFGSSGKA 1376
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522861|ref|XP_003530061.1| PREDICTED: uncharacterized protein LOC100779987 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/192 (76%), Positives = 168/192 (87%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EA+ LGF S+MVDGSHL F +N ++TK+I+ LAH K MLVEAELGRLSGTED LTVE+Y
Sbjct: 1185 VEALDLGFSSVMVDGSHLSFNENAAYTKFITLLAHPKNMLVEAELGRLSGTEDDLTVEEY 1244
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+LTDV A +FIDET IDALAVCIGNVHGKYP+SGPNL+ DLLK+LHALS KKG+ LV
Sbjct: 1245 EARLTDVTMASKFIDETGIDALAVCIGNVHGKYPASGPNLRFDLLKELHALSLKKGIFLV 1304
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGLS EL+K CI GVRKFNVNTEVRKAYMDSL PK+DL+H+MASAKEAMK VVA
Sbjct: 1305 LHGASGLSKELVKTCIHLGVRKFNVNTEVRKAYMDSLVTPKNDLVHVMASAKEAMKVVVA 1364
Query: 181 EKMRLFGSSGKA 192
EKM LFGS+G+A
Sbjct: 1365 EKMHLFGSAGRA 1376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326520533|dbj|BAK07525.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/190 (75%), Positives = 168/190 (88%)
Query: 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA 62
A+ +GFDS+MVDGSHLP +NI +TK IS LAH+KGMLVEAELGRLSGTEDGLT+E+YEA
Sbjct: 405 ALEMGFDSVMVDGSHLPLGENILYTKNISSLAHAKGMLVEAELGRLSGTEDGLTIEEYEA 464
Query: 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH 122
+ TD+ QA++FIDET IDALAVCIGNVHGKYP SGPNL+LDLLK+L AL+ KKGV LVLH
Sbjct: 465 RFTDIAQADQFIDETGIDALAVCIGNVHGKYPPSGPNLRLDLLKELRALTLKKGVSLVLH 524
Query: 123 GASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEK 182
GASGL EL+K CI+ GVRKFNVNTEVR +Y+ SL +P+ DL+ +MASAKEAMKAVVAEK
Sbjct: 525 GASGLPHELVKECIDLGVRKFNVNTEVRNSYLQSLKKPEKDLVQVMASAKEAMKAVVAEK 584
Query: 183 MRLFGSSGKA 192
MRLFGS+GKA
Sbjct: 585 MRLFGSAGKA 594
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413944293|gb|AFW76942.1| hypothetical protein ZEAMMB73_659633 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/192 (76%), Positives = 167/192 (86%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++A+ GFDS+MVDGSHL DNI +TK IS LAH+KG+LVEAELGRLSG+EDG+TVE+Y
Sbjct: 646 LQALEAGFDSVMVDGSHLTLGDNILYTKSISSLAHAKGLLVEAELGRLSGSEDGMTVEEY 705
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+ TDV QAEEFIDET IDALAVCIGNVHGKYP SGPNLK DLLKDL AL+ KKGV LV
Sbjct: 706 EARFTDVAQAEEFIDETSIDALAVCIGNVHGKYPPSGPNLKFDLLKDLRALTLKKGVSLV 765
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVA 180
LHGASGLS EL+K CI+ GVRKFNVNTEVR +Y+ SL +P+ DLI +MASAKEAMKAVVA
Sbjct: 766 LHGASGLSHELVKECIDLGVRKFNVNTEVRNSYLASLRKPEKDLIQVMASAKEAMKAVVA 825
Query: 181 EKMRLFGSSGKA 192
EK+RLFGS GKA
Sbjct: 826 EKLRLFGSCGKA 837
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 192 | ||||||
| TIGR_CMR|BA_2516 | 281 | BA_2516 "fructose-bisphosphate | 0.963 | 0.658 | 0.408 | 1.9e-28 | |
| TIGR_CMR|CHY_0128 | 284 | CHY_0128 "fructose-1,6-bisphos | 0.979 | 0.661 | 0.368 | 7.3e-27 | |
| UNIPROTKB|P0C8J6 | 284 | gatY "GatY" [Escherichia coli | 0.765 | 0.517 | 0.423 | 2.3e-23 | |
| UNIPROTKB|P0AB74 | 286 | kbaY [Escherichia coli K-12 (t | 0.744 | 0.5 | 0.421 | 2.9e-23 | |
| UNIPROTKB|G5EHY5 | 287 | MGCH7_ch7g899 "Fructose-bispho | 0.942 | 0.630 | 0.366 | 1.3e-22 | |
| ASPGD|ASPL0000048717 | 286 | AN2334 [Emericella nidulans (t | 0.812 | 0.545 | 0.384 | 4.3e-22 | |
| TIGR_CMR|BA_5580 | 285 | BA_5580 "fructose-bisphosphate | 0.963 | 0.649 | 0.345 | 8e-21 | |
| UNIPROTKB|P77704 | 278 | ydjI "predicted aldolase" [Esc | 0.916 | 0.633 | 0.385 | 2.7e-20 | |
| ASPGD|ASPL0000051061 | 288 | AN1888 [Emericella nidulans (t | 0.984 | 0.656 | 0.329 | 3.5e-20 | |
| TIGR_CMR|CPS_3876 | 354 | CPS_3876 "fructose-bisphosphat | 0.463 | 0.251 | 0.37 | 1.7e-13 |
| TIGR_CMR|BA_2516 BA_2516 "fructose-bisphosphate aldolase, class II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 80/196 (40%), Positives = 102/196 (52%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
E + +GF S+M DGSH P ++NI TK I LA G VEAE+GR+ G+EDG ED E
Sbjct: 92 ETLEIGFSSVMFDGSHYPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGS--EDIE 149
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVL 121
LT +A+ F +ETD+DALAV IGN HG Y + PN + LVL
Sbjct: 150 MLLTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRLDRLQEINDVVH---IPLVL 205
Query: 122 HGASGLSAELIKGCIERGVRKFNVNT----EVRKAYMDS-LSRPKSDLIHLXXXXXXXXX 176
HG SG+S E K CI+ GVRK NV T V A ++ L+ P SD
Sbjct: 206 HGGSGISPEDFKQCIQHGVRKINVATATFQNVITAVNNTVLNTPYSDYFTYHQDVIKAAY 265
Query: 177 XXXXXXXRLFGSSGKA 192
++FGS +A
Sbjct: 266 ENVKSHMQIFGSENRA 281
|
|
| TIGR_CMR|CHY_0128 CHY_0128 "fructose-1,6-bisphosphate aldolase, class II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 73/198 (36%), Positives = 106/198 (53%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
M I GF S+M+DGS PF +N++ TK + LAH+ G+ VEAELG++ GTED ++V++
Sbjct: 91 MACIRHGFTSVMIDGSKYPFAENVAITKKVVELAHAVGVSVEAELGKIGGTEDDISVDER 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLV 120
+A TD +A EF+ +T +D+LAV IG HG+Y P + LV
Sbjct: 151 DAFFTDPEEAREFVAQTGVDSLAVAIGTAHGRYKGV-PKLDFERLAKIRELVH---IPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLXXXXXXX 174
LHG+SG+ E IK I GV K N++T +R+A++ + P D +
Sbjct: 207 LHGSSGVPDEDIKKAISLGVAKVNIDTNIREAFVGKMREVLEKNPDEIDPRKILGPAREA 266
Query: 175 XXXXXXXXXRLFGSSGKA 192
R+FGSS KA
Sbjct: 267 AIEIIREKIRVFGSSNKA 284
|
|
| UNIPROTKB|P0C8J6 gatY "GatY" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 64/151 (42%), Positives = 85/151 (56%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
G S+M+D SHLPF NIS K + H + VEAELG+L G ED + V + +A T+
Sbjct: 97 GVRSVMIDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADALYTN 156
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVLHGASG 126
QA EF + T ID+LAV IG HG Y +S P + LVLHGASG
Sbjct: 157 PAQAREFAEATGIDSLAVAIGTAHGMY-ASAP---ALDFSRLENIRQWVNLPLVLHGASG 212
Query: 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSL 157
LS + I+ I+ G+ K NV TE++ A+ +L
Sbjct: 213 LSTKDIQQTIKLGICKINVATELKNAFSQAL 243
|
|
| UNIPROTKB|P0AB74 kbaY [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 62/147 (42%), Positives = 82/147 (55%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+ A LTD
Sbjct: 97 GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTD 156
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVLHGASG 126
+A+ F++ T +D+LAV IG HG Y S P V LVLHGAS
Sbjct: 157 PQEAKRFVELTGVDSLAVAIGTAHGLY-SKTPKIDFQRLAEIREVVD---VPLVLHGASD 212
Query: 127 LSAELIKGCIERGVRKFNVNTEVRKAY 153
+ E ++ IE GV K NV TE++ A+
Sbjct: 213 VPDEFVRRTIELGVTKVNVATELKIAF 239
|
|
| UNIPROTKB|G5EHY5 MGCH7_ch7g899 "Fructose-bisphosphate aldolase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 70/191 (36%), Positives = 93/191 (48%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-VEDYEAKLT 65
GFDS+M D SH +N++ T+ +S H++G+ EAE GR+ G EDG+ D E LT
Sbjct: 102 GFDSIMCDMSHYEKDENLALTRELSDYCHARGIATEAEPGRIEGGEDGVAETADLEGLLT 161
Query: 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXG--VLLVLHG 123
QAEEF+ T I+ LA GNVHG+Y GP G V LVLHG
Sbjct: 162 TPEQAEEFV-ATGIEMLAPAFGNVHGEY---GPRGIQLEYERLASVNQAVGDRVRLVLHG 217
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAY--MDSLSRPKSDLIHLXXXXXXXXXXXXXX 181
A + ++ + CIE GV K N+N + K Y + R K L +
Sbjct: 218 ADPFTEDIFQKCIELGVSKININKGMNKHYARVQEEMRGKP-LTSVIDAGTKAMQLAIEE 276
Query: 182 XXRLFGSSGKA 192
R GS+GKA
Sbjct: 277 YMRQLGSAGKA 287
|
|
| ASPGD|ASPL0000048717 AN2334 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 63/164 (38%), Positives = 87/164 (53%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-VEDYEAKLT 65
GFDS+MVD SH ++N+ T+ + H +G+ EAE GR+ G EDG+ + E LT
Sbjct: 100 GFDSIMVDMSHYEKEENLRLTRELVAYCHERGIATEAEPGRIEGGEDGVADTAELEGLLT 159
Query: 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXG--VLLVLHG 123
++EEF+D T ID LA GNVHG+Y GP G V LVLHG
Sbjct: 160 TPEESEEFVD-TGIDWLAPAFGNVHGEY---GPRGIQLEYERLKSINEKVGDRVRLVLHG 215
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHL 167
A + E+ + CIE GV K N+N + Y+ + R K+ + L
Sbjct: 216 ADPFTEEIFRKCIECGVSKVNINKVLNNEYV-KVQREKAGRVPL 258
|
|
| TIGR_CMR|BA_5580 BA_5580 "fructose-bisphosphate aldolase, class II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 68/197 (34%), Positives = 94/197 (47%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EAI GF S+M+D SH PF++N+ TK + AH++ + VEAELG + G ED + E
Sbjct: 95 EAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG-- 152
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVL 121
D + + ++ T ID LA +G+VHG Y PN GV LVL
Sbjct: 153 VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE-PNLGFAEMEQVRDFT---GVPLVL 208
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVR----KAYMDSLSRPKS--DLIHLXXXXXXXX 175
HG +G+ I+ I G K NVNTE + KA + L++ + D
Sbjct: 209 HGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAI 268
Query: 176 XXXXXXXXRLFGSSGKA 192
R FGS+GKA
Sbjct: 269 KATVIGKIREFGSNGKA 285
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| UNIPROTKB|P77704 ydjI "predicted aldolase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 74/192 (38%), Positives = 94/192 (48%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKL-- 64
G +SLM D S F++NI TK H G+ VEAELG + G E TV YE L
Sbjct: 96 GMNSLMRDASAFDFEENIRLTKEAVDFFHPLGIPVEAELGHV-GNE---TV--YEEALAG 149
Query: 65 ---TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVL 121
TD +QA EF++ T D+LAV IGN HG Y S P V LVL
Sbjct: 150 YHYTDPDQAAEFVERTGCDSLAVAIGNQHGVYTSE-PQLNFEVVKRVRDAVS---VPLVL 205
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSD-LIHLXXXXXXXXXXXXX 180
HGASG+S IK I G+ K N++TE+ +A M ++ + +HL
Sbjct: 206 HGASGISDADIKTAISLGIAKINIHTELCQAAMVAVKENQDQPFLHLEREVRKAVKERAL 265
Query: 181 XXXRLFGSSGKA 192
+LFGS GKA
Sbjct: 266 EKIKLFGSDGKA 277
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| ASPGD|ASPL0000051061 AN1888 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 64/194 (32%), Positives = 88/194 (45%)
Query: 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG-LTVEDYE 61
A L FDS+MVD SH +DN+ T++ + + ++ EAE GR+ G EDG + E
Sbjct: 96 AAELPFDSIMVDMSHHEKEDNLRKTRHWVRHCNERHIVTEAEPGRIEGGEDGVMDTAGLE 155
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXG-VLLV 120
A+ T + +EF T +D LA GNVHG+Y GP G V L
Sbjct: 156 ARFTTAEEVDEFA-ATGVDTLAPSFGNVHGEYGPQGPRLDFESIRFAKVRERANGRVRLA 214
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIH--LXXXXXXXXXXX 178
+HG +G S EL+K C+ G K NVN V Y + L + H L
Sbjct: 215 VHGTNGFSPELMKQCVAAGCCKINVNRCVLDDYYEHLRANAGKMPHTQLIEEGMEKVTQA 274
Query: 179 XXXXXRLFGSSGKA 192
+ GS G+A
Sbjct: 275 TIKWMEIIGSVGRA 288
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| TIGR_CMR|CPS_3876 CPS_3876 "fructose-bisphosphate aldolase, class II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 10 SLMVDG-SHLPFKDNISHTKYISFLAHSKGMLVEAELGRL-------SGTEDGLTVEDY- 60
SLM DG + ++ N+ T+ +AH+ G+ VE ELG L +G EDG+ E
Sbjct: 107 SLMDDGKTPSSYEYNVDVTRRTVEMAHACGVSVEGELGCLGSLETGMAGEEDGVGAEGVL 166
Query: 61 --EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGP 98
E LTD +A +F+++T +DALA+ G HG Y + P
Sbjct: 167 TKEQMLTDPEEAADFVNKTQVDALAIACGTSHGAYKFTRP 206
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.1.2.13 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_XV1100 | fructose-bisphosphate aldolase (617 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.29900002 | Predicted protein (297 aa) | • | • | 0.506 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 192 | |||
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-115 | |
| pfam01116 | 283 | pfam01116, F_bP_aldolase, Fructose-bisphosphate al | 5e-79 | |
| cd00947 | 276 | cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphospha | 6e-75 | |
| COG0191 | 286 | COG0191, Fba, Fructose/tagatose bisphosphate aldol | 2e-66 | |
| TIGR01859 | 282 | TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphat | 3e-56 | |
| PRK12737 | 284 | PRK12737, gatY, tagatose-bisphosphate aldolase; Re | 3e-55 | |
| PRK09195 | 284 | PRK09195, gatY, tagatose-bisphosphate aldolase; Re | 4e-55 | |
| PRK12857 | 284 | PRK12857, PRK12857, fructose-1,6-bisphosphate aldo | 4e-55 | |
| TIGR00167 | 288 | TIGR00167, cbbA, ketose-bisphosphate aldolase | 1e-53 | |
| TIGR01858 | 282 | TIGR01858, tag_bisphos_ald, class II aldolase, tag | 1e-49 | |
| PRK06806 | 281 | PRK06806, PRK06806, fructose-bisphosphate aldolase | 3e-49 | |
| PRK06801 | 286 | PRK06801, PRK06801, hypothetical protein; Provisio | 8e-47 | |
| PRK08185 | 283 | PRK08185, PRK08185, hypothetical protein; Provisio | 1e-45 | |
| PRK07998 | 283 | PRK07998, gatY, putative fructose-1,6-bisphosphate | 3e-40 | |
| PRK08610 | 286 | PRK08610, PRK08610, fructose-bisphosphate aldolase | 2e-36 | |
| PRK07315 | 293 | PRK07315, PRK07315, fructose-bisphosphate aldolase | 2e-36 | |
| PRK05835 | 307 | PRK05835, PRK05835, fructose-bisphosphate aldolase | 4e-36 | |
| PRK12738 | 286 | PRK12738, kbaY, tagatose-bisphosphate aldolase; Re | 2e-34 | |
| PRK07709 | 285 | PRK07709, PRK07709, fructose-bisphosphate aldolase | 8e-34 | |
| PRK09196 | 347 | PRK09196, PRK09196, fructose-1,6-bisphosphate aldo | 1e-30 | |
| cd00453 | 340 | cd00453, FTBP_aldolase_II, Fructose/tagarose-bisph | 5e-29 | |
| TIGR01521 | 347 | TIGR01521, FruBisAldo_II_B, fructose-bisphosphate | 8e-27 | |
| PRK13399 | 347 | PRK13399, PRK13399, fructose-1,6-bisphosphate aldo | 1e-25 | |
| PRK07084 | 321 | PRK07084, PRK07084, fructose-bisphosphate aldolase | 3e-23 | |
| TIGR01520 | 357 | TIGR01520, FruBisAldo_II_A, fructose-bisphosphate | 2e-15 | |
| cd00946 | 345 | cd00946, FBP_aldolase_IIA, Class II Type A, Fructo | 1e-14 | |
| PRK09197 | 350 | PRK09197, PRK09197, fructose-bisphosphate aldolase | 2e-13 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 357 bits (917), Expect = e-115
Identities = 156/193 (80%), Positives = 177/193 (91%), Gaps = 1/193 (0%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EA+ LGFDS+MVDGSHL F +NIS+TK IS LAHSKG++VEAELGRLSGTEDGLTVE+Y
Sbjct: 1186 LEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEY 1245
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EAKLTDV+QA+EFIDET IDALAVCIGNVHGKYP+SGPNL+LDLLK+L ALSSKKGVLLV
Sbjct: 1246 EAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLV 1305
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP-KSDLIHLMASAKEAMKAVV 179
LHGASGL LIK CIE GVRKFNVNTEVR AYM++LS P K+DLI +M++AKEAMKAVV
Sbjct: 1306 LHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVV 1365
Query: 180 AEKMRLFGSSGKA 192
AEK+RLFGS+GKA
Sbjct: 1366 AEKLRLFGSAGKA 1378
|
Length = 1378 |
| >gnl|CDD|216305 pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 5e-79
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 9/197 (4%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EAI GF S+M+DGSHLPF++NI+ TK + AH++G+ VEAELGR+ G EDG+ +
Sbjct: 90 LEAIEAGFSSVMIDGSHLPFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSED 149
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA TD +A+EF++ T +D+LAV IGNVHG Y P L D LK++ A V LV
Sbjct: 150 EALYTDPEEAKEFVERTGVDSLAVAIGNVHGVYKPGEPKLDFDRLKEIQAAV---PVPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHG SG+ E I+ I+ GV K N++T+++ A+ ++ P + D + A+EA
Sbjct: 207 LHGGSGVPDEEIRKAIKLGVAKINIDTDLQWAFTKAVREYLAENPGNYDPRKYLRPAREA 266
Query: 175 MKAVVAEKMRLFGSSGK 191
MK VV EK+RLFGS+GK
Sbjct: 267 MKEVVKEKIRLFGSAGK 283
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Length = 283 |
| >gnl|CDD|238477 cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 6e-75
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 11/196 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
AI GF S+M+DGSHLPF++N++ TK + LAH+ G+ VEAELGR+ G EDG+ +
Sbjct: 86 KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD-- 143
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
E LTD +AEEF++ET +DALAV IG HG Y P L D LK++ V LV
Sbjct: 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLV 200
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHG SG+ E I+ I+ GV K N+NT++R A+ +L PK D +A A EA
Sbjct: 201 LHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEA 260
Query: 175 MKAVVAEKMRLFGSSG 190
+K VV KM LFGS+G
Sbjct: 261 VKEVVKHKMELFGSAG 276
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. Length = 276 |
| >gnl|CDD|223269 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 2e-66
Identities = 91/198 (45%), Positives = 123/198 (62%), Gaps = 9/198 (4%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+AI GF S+M+DGSHLPF++NI+ TK + AH+ G+ VEAELG L G EDG+ +
Sbjct: 92 KQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTD 151
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
A LTD +A EF++ T IDALA IGNVHG Y P L D LK++ S + LV
Sbjct: 152 PADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS---LPLV 208
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PKS-DLIHLMASAKEA 174
LHG SG+ E I+ I+ GV K N++T+++ A+ ++ PK D + A EA
Sbjct: 209 LHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEA 268
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV EK++ FGS+GKA
Sbjct: 269 MKEVVKEKIKEFGSAGKA 286
|
Length = 286 |
| >gnl|CDD|130918 TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 3e-56
Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 12/198 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++AI GF S+M+DGSHLPF++N++ TK + +AH+KG+ VEAELG L G EDG+ +
Sbjct: 91 IKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEK-- 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+L D ++AE+F+ ET +D LA IG HGKY P L + LK + + LV
Sbjct: 149 EAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGE-PGLDFERLK---EIKELTNIPLV 204
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI---HLMASAKEA 174
LHGASG+ E IK I+ G+ K N++T+ R A+ ++ + K D ++ A+EA
Sbjct: 205 LHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREA 264
Query: 175 MKAVVAEKMRLFGSSGKA 192
+K V EKMRLFGS+GKA
Sbjct: 265 IKETVKEKMRLFGSAGKA 282
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 282 |
| >gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 3e-55
Identities = 81/198 (40%), Positives = 114/198 (57%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ + G S+M+DGSHL F++NI+ K + H VEAELGRL G ED L V++
Sbjct: 91 KKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEK 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
+A T+ + A EF++ T ID+LAV IG HG Y P L + L ++ S + LV
Sbjct: 151 DAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLY-KGEPKLDFERLAEIREKVS---IPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEA 174
LHGASG+ E +K I G+ K NV TE++ A+ D++ + PK +D M K A
Sbjct: 207 LHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV EK+++ GS GK
Sbjct: 267 MKEVVREKIKVCGSEGKL 284
|
Length = 284 |
| >gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 4e-55
Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ + G S+M+DGSHLPF NIS K + H + VEAELGRL G ED L V++
Sbjct: 91 AQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEA 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
+A TD QA EF++ T ID+LAV IG HG Y P L D L + + LV
Sbjct: 151 DALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGE-PKLDFD---RLENIRQWVNIPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPK-SDLIHLMASAKEA 174
LHGASGL + I+ I+ G+ K NV TE++ A+ +L P+ +D H + AK A
Sbjct: 207 LHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV++ + G GKA
Sbjct: 267 MKDVVSKVIADCGCEGKA 284
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Length = 284 |
| >gnl|CDD|237235 PRK12857, PRK12857, fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 4e-55
Identities = 87/198 (43%), Positives = 126/198 (63%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
M+ I GF S+M+DGS LP ++NI+ TK + +AH+ G+ VEAELG++ GTED +TV++
Sbjct: 91 MKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDER 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA +TD +A F++ET +DALA+ IG HG Y P L D L + L + +V
Sbjct: 151 EAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGE-PKLDFDRLAKIKELV---NIPIV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI---HLMASAKEA 174
LHG+SG+ E I+ I GVRK N++T +R+A++ L D I ++ A+EA
Sbjct: 207 LHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
K V+ EK+RLFGS+GKA
Sbjct: 267 AKEVIREKIRLFGSAGKA 284
|
Length = 284 |
| >gnl|CDD|232852 TIGR00167, cbbA, ketose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-53
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 9/197 (4%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+DGSH PF++NI TK + AH G+ VEAELG L G EDG++V D
Sbjct: 95 QAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADES 154
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
A TD +A+EF+ T +D+LA IGNVHG Y L + L+++ + + LVL
Sbjct: 155 ALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN---LPLVL 211
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI---HLMASAKEAM 175
HG SG+ E IK I GV K N++TE++ A+ ++ D + ++AM
Sbjct: 212 HGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAM 271
Query: 176 KAVVAEKMRLFGSSGKA 192
K VV EK++LFGS+ KA
Sbjct: 272 KEVVLEKIKLFGSANKA 288
|
This model is under revision. Proteins found by this model include fructose-bisphosphate and tagatose-bisphosphate aldolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 288 |
| >gnl|CDD|130917 TIGR01858, tag_bisphos_ald, class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-49
Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
+ G S M+DGSH PF N+ K + H + VEAELGRL G ED L+V++ +A
Sbjct: 92 VHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDAL 151
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
TD +A+EF++ T +D+LAV IG HG Y P L D L ++ + V LVLHG
Sbjct: 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLY-KKTPKLDFDRLAEIREVVD---VPLVLHG 207
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPK-SDLIHLMASAKEAMKA 177
AS + E ++ IE G+ K NV TE++ A+ ++ P+ +D + M K+AMK
Sbjct: 208 ASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKK 267
Query: 178 VVAEKMRLFGSSGKA 192
VV K+ + GS+G+A
Sbjct: 268 VVRNKINVCGSAGRA 282
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. Length = 282 |
| >gnl|CDD|180705 PRK06806, PRK06806, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-49
Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 17/199 (8%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EA+ +GF S+M DGSHLP ++NI TK I LA G VEAE+GR+ G+EDG ED E
Sbjct: 92 EALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGS--EDIE 149
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
LT +A+ F +ETD+DALAV IGN HG Y PNL+ D L++++ + LVL
Sbjct: 150 MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGD-PNLRFDRLQEIN---DVVHIPLVL 205
Query: 122 HGASGLSAELIKGCIERGVRKFNVNT--------EVRKAYMDSLSRPKSDLIHLMASAKE 173
HG SG+S E K CI+ G+RK NV T V +++ P SD +
Sbjct: 206 HGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNLVLNT---PYSDYFTYHQDVIK 262
Query: 174 AMKAVVAEKMRLFGSSGKA 192
A V + M++FGS KA
Sbjct: 263 AAYENVKKHMQIFGSENKA 281
|
Length = 281 |
| >gnl|CDD|180701 PRK06801, PRK06801, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 8e-47
Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 12/200 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG-LTVED 59
+ A+ LGF S+M DGS L +++N+ T+ + + H+ G+ VEAELG + G E G L E
Sbjct: 91 VRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEA 150
Query: 60 YEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLL 119
AK TD A +F+D T IDALAV IGN HGKY KLD + L A+ + G+ L
Sbjct: 151 DSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEP---KLDFAR-LAAIHQQTGLPL 206
Query: 120 VLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR------PKSD-LIHLMASAK 172
VLHG SG+S + IE G+ K N T + +A + ++ + D L+ +
Sbjct: 207 VLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIE 266
Query: 173 EAMKAVVAEKMRLFGSSGKA 192
EA+ VA++MR+FGS+G+A
Sbjct: 267 EAISDTVAQQMRIFGSAGQA 286
|
Length = 286 |
| >gnl|CDD|181275 PRK08185, PRK08185, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-45
Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 14/201 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
M AI GF S+M+DGS LP+++N++ TK + LAH G+ VE ELG + T G ++E
Sbjct: 85 MRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT--GTSIEGG 142
Query: 61 EAKL--TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGV 117
+++ TD QAE+F+ T +D LAV IG HG YP P L++DLLK+++ + +
Sbjct: 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINE---RVDI 199
Query: 118 LLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIH------LMASA 171
LVLHG S I ++ GV K N++++++ A+ + SD + SA
Sbjct: 200 PLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILSDNPSLYEPNQIYPSA 259
Query: 172 KEAMKAVVAEKMRLFGSSGKA 192
EA K VV KM LF S+GKA
Sbjct: 260 IEAAKEVVRHKMDLFNSTGKA 280
|
Length = 283 |
| >gnl|CDD|181192 PRK07998, gatY, putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-40
Identities = 69/194 (35%), Positives = 117/194 (60%), Gaps = 13/194 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+DG+ LPF++NI+ TK A S G+ VEAELG + G ED V + +
Sbjct: 92 QAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDD-HVSEAD 150
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
K T+ + ++F++ T D LAV IGNVHG P + + LLK + +S V LV+
Sbjct: 151 CK-TEPEKVKDFVERTGCDMLAVSIGNVHGL--EDIPRIDIPLLKRIAEVSP---VPLVI 204
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP------KSDLIHLMASAKEAM 175
HG SG+ E+++ + V K N+ +++RKA++ ++ + +++L +MA AK+A+
Sbjct: 205 HGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAV 264
Query: 176 KAVVAEKMRLFGSS 189
+ V K+++ S+
Sbjct: 265 EEDVYSKIKMMNSN 278
|
Length = 283 |
| >gnl|CDD|181501 PRK08610, PRK08610, fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-36
Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 12/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EAI GF S+M+D SH PF++N++ TK + AH KG+ VEAELG + G ED + +
Sbjct: 95 EAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADG-- 152
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
D + +E +++T IDALA +G+VHG Y P L K++ + G+ LVL
Sbjct: 153 IIYADPKECQELVEKTGIDALAPALGSVHGPYKGE-PKLG---FKEMEEIGLSTGLPLVL 208
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVR----KAYMDSLSRPKS--DLIHLMASAKEAM 175
HG +G+ + I+ I G K NVNTE + KA D L+ K D + A+EA+
Sbjct: 209 HGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAI 268
Query: 176 KAVVAEKMRLFGSSGKA 192
K V K++ FG+S +A
Sbjct: 269 KETVKGKIKEFGTSNRA 285
|
Length = 286 |
| >gnl|CDD|180926 PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-36
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 21/207 (10%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+E I +G+ S+M DGSHLP ++N+ K + AH+KG+ VEAE+G + G EDG+
Sbjct: 93 LECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGII---G 149
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
+ +L + A+ + ET ID LA IGN+HG YP + L LD L+ L G +V
Sbjct: 150 KGELAPIEDAKAMV-ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP--GFPIV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS---------------LSRPKSDLI 165
LHG SG+ + I+ I+ GV K NVNTE + A+ ++ + D
Sbjct: 207 LHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFARDYEANEAEYDKKKLFDPR 266
Query: 166 HLMASAKEAMKAVVAEKMRLFGSSGKA 192
+A +A++A V E++ +FGS+ KA
Sbjct: 267 KFLAPGVKAIQASVEERIDVFGSANKA 293
|
Length = 293 |
| >gnl|CDD|180280 PRK05835, PRK05835, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 4e-36
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 31/218 (14%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+D SH F++N+ T + +AH+ G+ VEAELGRL G ED ++V++ +
Sbjct: 92 KAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKD 151
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVLLV 120
A L + +AE+F+ E+ +D LA IG HG + G P L + L+++ L++ + LV
Sbjct: 152 AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN---IPLV 208
Query: 121 LHGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159
LHGAS G+ E ++ ++ G+ K N +T++R A++ + +
Sbjct: 209 LHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRK 268
Query: 160 ------PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191
+ DL + A+ A+K VV E+M+L GS+ K
Sbjct: 269 VANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANK 306
|
Length = 307 |
| >gnl|CDD|183711 PRK12738, kbaY, tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 2e-34
Identities = 74/191 (38%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+ A LTD
Sbjct: 97 GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTD 156
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126
+A+ F++ T +D+LAV IG HG Y S P + L ++ + V LVLHGAS
Sbjct: 157 PQEAKRFVELTGVDSLAVAIGTAHGLY-SKTPKIDFQRLAEIREVVD---VPLVLHGASD 212
Query: 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVA 180
+ E ++ IE GV K NV TE++ A+ ++ P+ +D + M +AMK VV
Sbjct: 213 VPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVR 272
Query: 181 EKMRLFGSSGK 191
K+ + GS+ +
Sbjct: 273 NKINVCGSANR 283
|
Length = 286 |
| >gnl|CDD|169068 PRK07709, PRK07709, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 8e-34
Identities = 74/197 (37%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EAI GF S+M+D SH PF++N+ TK + AH++ + VEAELG + G ED + E
Sbjct: 95 EAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG-- 152
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
D + + ++ T ID LA +G+VHG Y PNL ++ + GV LVL
Sbjct: 153 VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE-PNLG---FAEMEQVRDFTGVPLVL 208
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVR----KAYMDSLSRPKS--DLIHLMASAKEAM 175
HG +G+ I+ I G K NVNTE + KA + L++ + D + ++A+
Sbjct: 209 HGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAI 268
Query: 176 KAVVAEKMRLFGSSGKA 192
KA V K+R FGS+GKA
Sbjct: 269 KATVIGKIREFGSNGKA 285
|
Length = 285 |
| >gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-30
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 54/242 (22%)
Query: 1 MEAIVLGFDSLMVDGSHLP-------FKDNISHTKYISFLAHSKGMLVEAELGRL----- 48
AI LGF S+M+DGS ++ N+ T+ + +AH+ G+ VE ELG L
Sbjct: 92 QRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLET 151
Query: 49 --SGTEDGLTVE---DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY----PSSGPN 99
G EDG E ++ LTD +A +F+ +T +DALA+ IG HG Y +G
Sbjct: 152 GMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDV 211
Query: 100 LKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIER 138
L +D +K++HA LV+HG+S G+ E I+ I+
Sbjct: 212 LAIDRIKEIHA--RLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKH 269
Query: 139 GVRKFNVNTE--------VRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190
GVRK N++T+ +R+ ++ S + D + A EAMK + + FG++G
Sbjct: 270 GVRKVNIDTDLRLAMTGAIRRFLAENPS--EFDPRKYLKPAMEAMKKICKARYEAFGTAG 327
Query: 191 KA 192
+A
Sbjct: 328 QA 329
|
Length = 347 |
| >gnl|CDD|238255 cd00453, FTBP_aldolase_II, Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-29
Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE--DYEAKLT 65
F S M+D S ++NI GM +E ELG G EDG+ D A T
Sbjct: 122 FSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYT 181
Query: 66 DVNQAEEFIDET----DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL--- 118
+ E +A GNVHG Y L +L+D SKK L
Sbjct: 182 QPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHN 241
Query: 119 ---LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
V HG SG +A+ IK + GV K N++T+ + A
Sbjct: 242 SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWAT 279
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. Length = 340 |
| >gnl|CDD|130584 TIGR01521, FruBisAldo_II_B, fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-27
Identities = 75/238 (31%), Positives = 107/238 (44%), Gaps = 50/238 (21%)
Query: 3 AIVLGFDSLMVDGS-----HLP--FKDNISHTKYISFLAHSKGMLVEAELGRL------- 48
AI LGF S+M+DGS P + N+ T + AH+ G VE ELG L
Sbjct: 92 AIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGM 151
Query: 49 SGTEDGLTVE---DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY----PSSGPNLK 101
EDG E D+ LTD +A +F+ +T +DALAV IG HG Y +G L
Sbjct: 152 GEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLA 211
Query: 102 LDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIERGV 140
+ ++++HA LV+HG+S G+ E I I+ GV
Sbjct: 212 IQRIEEIHARLPDTH--LVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGV 269
Query: 141 RKFNVNTEVRKAYMDSLSR-----PKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
RK N++T++R A + R P D + EAM+ V + FG++G A
Sbjct: 270 RKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAGNA 327
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. Length = 347 |
| >gnl|CDD|184029 PRK13399, PRK13399, fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 50/240 (20%)
Query: 1 MEAIVLGFDSLMVDGSHLP-------FKDNISHTKYISFLAHSKGMLVEAELGRL----- 48
AI GF S+M+DGS L + N+ T+ ++ +AH+ G+ VE ELG L
Sbjct: 92 QSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLET 151
Query: 49 --SGTEDGLTVE---DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY----PSSGPN 99
+G EDG+ E ++ LTD +QA +F+ T +DALA+ IG HG Y G
Sbjct: 152 GEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDI 211
Query: 100 LKLDLLKDLHALSSKKGVLLVLHGASGLSAEL---------------------IKGCIER 138
L +D ++++HA LV+HG+S + EL I+ I+
Sbjct: 212 LAIDRIEEIHA--RLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKH 269
Query: 139 GVRKFNVNTEVRKAYMDSL------SRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
GVRK N++T++R A ++ + D + A +AM A+ ++ FG++G+A
Sbjct: 270 GVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAGQA 329
|
Length = 347 |
| >gnl|CDD|180829 PRK07084, PRK07084, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 3e-23
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 12/133 (9%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
GF S+M+DGSHLP+++N++ TK + AH + VE ELG L+G ED ++ E T
Sbjct: 108 GFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE--HHTYTQ 165
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYP----SSGPNLKLDLLKDLHALSSKK--GVLLV 120
+ E+F+ +T +D+LA+ IG HG Y P L+ D+L+++ K+ G +V
Sbjct: 166 PEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEI----EKRIPGFPIV 221
Query: 121 LHGASGLSAELIK 133
LHG+S + E +K
Sbjct: 222 LHGSSSVPQEYVK 234
|
Length = 321 |
| >gnl|CDD|130583 TIGR01520, FruBisAldo_II_A, fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-15
Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 8 FDSLMVDGSHLPFKDNIS-HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA---- 62
F S M+D S P ++NI KY+ +A K M +E E+G G EDG+ +A
Sbjct: 136 FSSHMIDLSEEPIEENIEICVKYLKRMAKIK-MWLEIEIGITGGEEDGVDNSHMDAEALY 194
Query: 63 -KLTDVNQA-EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKD-------LHALSS 113
+ DV A EE + ++A GNVHG Y L D+L D L +
Sbjct: 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPA 254
Query: 114 KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
K + V HG SG + + IK + GV K N++T+ + AY
Sbjct: 255 AKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWAY 294
|
coli subtype. Members of this family are class II examples of the glycolytic enzyme fructose-bisphosphate aldolase (FBA). This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 357 |
| >gnl|CDD|238476 cd00946, FBP_aldolase_IIA, Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-14
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 33/171 (19%)
Query: 8 FDSLMVDGSHLPFKDNISH-TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
F S M+D S P ++NI KY+ +A M +E E+G G EDG V++ +
Sbjct: 124 FSSHMLDLSEEPLEENIEICKKYLERMA-KINMWLEMEIGITGGEEDG--VDN-----SG 175
Query: 67 VNQAEEFIDETDIDA-------------LAVCIGNVHGKYPSSGPNLKL---------DL 104
V+ AE + D+ +A GNVHG Y N+KL D
Sbjct: 176 VDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVY--KPGNVKLQPEILGEHQDY 233
Query: 105 LKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMD 155
+++ L+ K + V HG SG + E I+ I GV K N++T+ + AY +
Sbjct: 234 VREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWE 284
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. Length = 345 |
| >gnl|CDD|236406 PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 2e-13
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYIS--FLAHSK--GMLVEAELGRLSGTEDGLTVEDYE-A 62
F S M+D S P ++NI I +L GM +E ELG G EDG+ + +
Sbjct: 129 FSSHMIDLSEEPLEENIE----ICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNS 184
Query: 63 KL----TDVNQA-EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-- 115
KL DV A E + +A GNVHG Y L+ ++LKD SKK
Sbjct: 185 KLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFG 244
Query: 116 ----GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
V HG SG + E I+ + GV K N++T+ + A+
Sbjct: 245 LPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAF 286
|
Length = 350 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 192 | |||
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 100.0 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 100.0 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 100.0 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 100.0 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 100.0 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 100.0 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 100.0 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 100.0 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 100.0 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 100.0 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 100.0 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 100.0 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 100.0 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 100.0 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 100.0 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 100.0 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 100.0 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 100.0 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 100.0 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 100.0 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 100.0 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 100.0 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 100.0 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 100.0 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 100.0 | |
| KOG4153 | 358 | consensus Fructose 1,6-bisphosphate aldolase [Carb | 100.0 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.74 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.71 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.64 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.64 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 97.52 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.41 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.33 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.28 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 97.25 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.23 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.15 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 97.12 | |
| PRK15052 | 421 | D-tagatose-1,6-bisphosphate aldolase subunit GatZ; | 97.12 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.11 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.11 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.06 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.05 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 97.01 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.97 | |
| TIGR02810 | 420 | agaZ_gatZ D-tagatose-bisphosphate aldolase, class | 96.96 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 96.91 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.89 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.88 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.86 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 96.73 | |
| PRK15458 | 426 | tagatose 6-phosphate aldolase subunit KbaZ; Provis | 96.72 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.71 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.7 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 96.66 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.65 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 96.62 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 96.56 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 96.54 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 96.53 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 96.52 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.49 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.49 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.47 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.45 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 96.44 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.44 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 96.38 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 96.31 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 96.28 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 96.24 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 96.24 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 96.22 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 96.18 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 96.15 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.12 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.12 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 96.11 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.05 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 96.04 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 96.02 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 96.01 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 96.01 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.0 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 95.97 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 95.95 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 95.87 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 95.87 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 95.83 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 95.79 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 95.78 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 95.78 | |
| PF08013 | 424 | Tagatose_6_P_K: Tagatose 6 phosphate kinase; Inter | 95.78 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 95.74 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 95.72 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 95.71 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 95.7 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 95.63 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 95.61 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 95.55 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 95.53 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.49 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 95.45 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 95.45 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 95.43 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.43 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 95.36 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 95.32 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 95.2 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 95.19 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 95.16 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 95.16 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 95.11 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 95.09 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 95.09 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 95.03 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 95.01 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 95.0 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 94.99 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 94.92 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 94.91 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 94.91 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 94.87 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 94.87 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 94.86 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 94.79 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 94.76 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.76 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 94.74 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 94.73 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 94.64 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 94.62 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 94.62 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 94.59 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 94.57 | |
| PLN02535 | 364 | glycolate oxidase | 94.55 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.5 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 94.46 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 94.36 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 94.32 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 94.32 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 94.31 | |
| PLN02591 | 250 | tryptophan synthase | 94.27 | |
| PRK06852 | 304 | aldolase; Validated | 94.17 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 94.17 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.13 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 94.12 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 94.08 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 93.94 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 93.88 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 93.83 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 93.79 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 93.68 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 93.67 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 93.66 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 93.63 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 93.59 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.52 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 93.51 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 93.46 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 93.28 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 93.26 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 93.25 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 93.22 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 93.13 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 93.11 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 93.09 | |
| PLN02979 | 366 | glycolate oxidase | 93.09 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 92.94 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 92.89 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 92.84 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 92.84 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 92.83 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 92.81 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 92.79 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 92.75 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 92.73 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.67 | |
| PRK15452 | 443 | putative protease; Provisional | 92.58 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 92.58 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.48 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 92.33 | |
| COG2069 | 403 | CdhD CO dehydrogenase/acetyl-CoA synthase delta su | 92.31 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 92.23 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 92.17 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 91.99 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 91.8 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 91.79 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 91.73 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.59 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 91.51 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 91.34 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 91.33 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 91.23 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 91.2 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 91.11 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 91.05 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 91.02 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 91.01 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 90.94 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 90.94 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 90.84 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 90.78 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 90.67 | |
| cd03308 | 378 | CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro | 90.65 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 90.52 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 90.51 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 90.37 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 90.22 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 90.14 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 90.08 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 90.01 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 89.96 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 89.95 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 89.86 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 89.83 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 89.81 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 89.79 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 89.68 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.67 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 89.64 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 89.6 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 89.59 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.52 | |
| PRK10128 | 267 | 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | 89.51 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 89.27 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 89.2 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 88.92 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 88.73 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 88.67 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 88.62 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 88.46 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 88.45 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 88.42 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 88.29 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 88.2 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 88.19 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 88.15 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.15 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 88.01 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 87.75 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 87.69 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 87.66 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 87.37 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 87.35 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 87.26 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 87.09 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 86.97 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 86.93 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 86.83 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 86.67 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 86.54 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 86.44 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 86.28 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 86.26 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 86.25 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 86.19 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 86.17 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 86.08 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 86.02 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 85.79 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 85.59 | |
| TIGR01418 | 782 | PEP_synth phosphoenolpyruvate synthase. Also calle | 85.58 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 85.57 | |
| PRK06464 | 795 | phosphoenolpyruvate synthase; Validated | 85.56 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 85.53 | |
| PRK15108 | 345 | biotin synthase; Provisional | 85.2 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 85.17 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 85.01 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 84.96 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 84.76 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 84.63 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 84.53 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 84.43 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 84.23 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 84.13 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 84.12 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 83.99 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 83.98 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 83.96 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 83.95 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 83.92 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 83.77 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 83.74 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 83.61 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 83.15 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 83.14 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 83.13 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 83.1 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 83.04 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 83.03 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 83.0 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 83.0 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 82.99 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 82.9 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 82.86 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 82.67 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 82.61 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 82.6 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 82.51 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 82.29 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 82.18 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 82.1 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 82.02 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 81.94 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 81.91 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 81.83 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 81.68 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 81.62 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 81.6 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 81.55 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 81.49 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 81.41 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 81.4 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 81.27 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 81.27 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 80.9 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 80.73 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 80.51 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 80.5 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 80.28 | |
| PRK08508 | 279 | biotin synthase; Provisional | 80.12 |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=497.51 Aligned_cols=188 Identities=44% Similarity=0.666 Sum_probs=176.1
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++||+||||||+|||.|++......+..||||+||++|+++||||
T Consensus 91 ~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 170 (284)
T PRK09195 91 AQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGID 170 (284)
T ss_pred HHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcC
Confidence 47999999999999999999999999999999999999999999999999888744333346799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|||++||++||+||||+|+++.+|.+++++
T Consensus 171 ~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 246 (284)
T PRK09195 171 SLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNY 246 (284)
T ss_pred EEeeccCccccccCC-CCcCCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||+.++..++++++++++++|++|||.||+
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k~ 284 (284)
T PRK09195 247 LTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCEGKA 284 (284)
T ss_pred HHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=497.86 Aligned_cols=188 Identities=39% Similarity=0.624 Sum_probs=175.5
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+.........||||++|++|+++||||
T Consensus 91 ~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD 170 (286)
T PRK12738 91 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVD 170 (286)
T ss_pred HHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCC
Confidence 47999999999999999999999999999999999999999999999999887643222245799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ +|+||||||++|++.+ ++|||||||||+|+|+|++|+++||+||||+|+++.+|++++++
T Consensus 171 ~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~ 246 (286)
T PRK12738 171 SLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAW 246 (286)
T ss_pred EEEeccCcccCCCCC-CCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 5999999999999998 69999999999999999999999999999999999999998873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||+.++..++++++++++++|++|||.||+
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k~ 284 (286)
T PRK12738 247 FAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=496.43 Aligned_cols=188 Identities=41% Similarity=0.653 Sum_probs=175.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||+|||+|||.||+......+..||||++|++|+++||||
T Consensus 89 ~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 168 (282)
T TIGR01858 89 RQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVD 168 (282)
T ss_pred HHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcC
Confidence 47999999999999999999999999999999999999999999999999888643322345799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+||||||++|++.+ ++|||||||||+|+|||++|+++||+||||+|+++.+|++++++
T Consensus 169 ~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 244 (282)
T TIGR01858 169 SLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAY 244 (282)
T ss_pred EEecccCccccCcCC-CCccCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999998873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||+.++..++++|++.++++|++|||.||+
T Consensus 245 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 282 (282)
T TIGR01858 245 FAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSAGRA 282 (282)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 4899999999999999999999999999986
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-73 Score=493.65 Aligned_cols=186 Identities=38% Similarity=0.628 Sum_probs=174.9
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+.... ...|||||||++|+++||||
T Consensus 94 ~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~--~~~yT~peeA~~Fv~~TgvD 171 (285)
T PRK07709 94 KEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE--GVIYADPAECKHLVEATGID 171 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc--cccCCCHHHHHHHHHHhCCC
Confidence 4799999999999999999999999999999999999999999999999988764322 45799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|||++||++||+||||+|+++.+|++++++
T Consensus 172 ~LAvaiGt~HG~Y~~-~p~L~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 247 (285)
T PRK07709 172 CLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREV 247 (285)
T ss_pred EEEEeecccccCcCC-CCccCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||++++..++++|+++++++|++|||.||+
T Consensus 248 ~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ka 285 (285)
T PRK07709 248 LNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 285 (285)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-73 Score=492.64 Aligned_cols=187 Identities=43% Similarity=0.675 Sum_probs=174.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.|++......+..||||++|++|+++||||
T Consensus 91 ~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD 170 (284)
T PRK12737 91 KKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGID 170 (284)
T ss_pred HHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCC
Confidence 47999999999999999999999999999999999999999999999999888643333345799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++|+++||+||||+|+++.+|++++++
T Consensus 171 ~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~ 246 (284)
T PRK12737 171 SLAVAIGTAHGLYKG-EPKLDFERLAEIREKV---SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKY 246 (284)
T ss_pred EEeeccCccccccCC-CCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999988873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
++ .||+.++..++++++++++++|++|||.||
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 283 (284)
T PRK12737 247 FYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSEGK 283 (284)
T ss_pred HHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33 589999999999999999999999999997
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-73 Score=492.43 Aligned_cols=186 Identities=38% Similarity=0.610 Sum_probs=174.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++|+++|++||++|++||||||+|||.||+.... ...|||||||++|+++||||
T Consensus 94 ~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~--~~~yT~peea~~Fv~~TgvD 171 (286)
T PRK08610 94 KEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD--GIIYADPKECQELVEKTGID 171 (286)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc--ccccCCHHHHHHHHHHHCCC
Confidence 4799999999999999999999999999999999999999999999999888764322 45799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++||++||+||||+|+++.+|++++++
T Consensus 172 ~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~ 247 (286)
T PRK08610 172 ALAPALGSVHGPYKG-EPKLGFKEMEEIGLST---GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDV 247 (286)
T ss_pred EEEeeccccccccCC-CCCCCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..++++|+++++++|++|||.||+
T Consensus 248 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~~ka 285 (286)
T PRK08610 248 LNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTSNRA 285 (286)
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
|
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-73 Score=490.11 Aligned_cols=189 Identities=48% Similarity=0.731 Sum_probs=179.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||+.||++|++||++|++||+|||.+||.||+......+..||+|+||++||++||||
T Consensus 92 ~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD 171 (286)
T COG0191 92 KQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGID 171 (286)
T ss_pred HHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcc
Confidence 47999999999999999999999999999999999999999999999999999865544456899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+||+||||+||.|++++|+|||++|++|++.+ ++|||||||||+|+++|+++|++||+||||+||++.||+.++|+
T Consensus 172 ~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~---~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~ 248 (286)
T COG0191 172 ALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV---SLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREY 248 (286)
T ss_pred eeeeeccccccCCCCCCCCCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHH
Confidence 99999999999999767999999999999999 59999999999999999999999999999999999999999983
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .|||.++.+++++|+++|+++|++|||.|||
T Consensus 249 ~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~gka 286 (286)
T COG0191 249 LAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSAGKA 286 (286)
T ss_pred HHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCccCCC
Confidence 43 5999999999999999999999999999986
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=491.48 Aligned_cols=188 Identities=46% Similarity=0.783 Sum_probs=175.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++||+||||||+|||.|++......+..||+|++|++|+++||||
T Consensus 91 ~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD 170 (284)
T PRK12857 91 MKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVD 170 (284)
T ss_pred HHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCC
Confidence 47999999999999999999999999999999999999999999999998887643222345799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++|+++||+||||+|+++.+|++++++
T Consensus 171 ~LAvaiGt~HG~y~~-~p~Ld~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~ 246 (284)
T PRK12857 171 ALAIAIGTAHGPYKG-EPKLDFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREV 246 (284)
T ss_pred EEeeccCccccccCC-CCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..++++|++.++++|++|||.||+
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 284 (284)
T PRK12857 247 LEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSAGKA 284 (284)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-72 Score=488.96 Aligned_cols=188 Identities=44% Similarity=0.678 Sum_probs=175.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||+|||+|||.|++......+..||+|++|++|+++||||
T Consensus 94 ~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 173 (288)
T TIGR00167 94 AQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVD 173 (288)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCc
Confidence 47999999999999999999999999999999999999999999999999888743223346799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCC-CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC
Q 029540 81 ALAVCIGNVHGKYPSSGPN-LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~-ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~ 159 (192)
+|||||||+||.|++ .|+ |||+||++|++.+ ++|||||||||+|+|+|++||++||+||||+|+++.+|++++++
T Consensus 174 ~LAvaiGt~HG~y~~-~p~~Ld~~~L~~I~~~v---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~ 249 (288)
T TIGR00167 174 SLAAAIGNVHGVYKG-EPKGLDFERLEEIQKYV---NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRN 249 (288)
T ss_pred EEeeccCccccccCC-CCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHH
Confidence 999999999999997 599 9999999999999 69999999999999999999999999999999999999999873
Q ss_pred -----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 -----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..+++++++.++++|++|||.||+
T Consensus 250 ~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 288 (288)
T TIGR00167 250 YYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSANKA 288 (288)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-72 Score=488.23 Aligned_cols=190 Identities=49% Similarity=0.783 Sum_probs=170.7
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc-ccccCCCHHHHHHHhhhhCC
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED-YEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~-~~~~~T~peea~~Fv~~Tgv 79 (192)
++||++||||||||||++||||||++||++|++||++|++||+|||+|||.||+..... .+..||||++|++|+++|||
T Consensus 90 ~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tgv 169 (287)
T PF01116_consen 90 KRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGV 169 (287)
T ss_dssp HHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTT
T ss_pred HHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999999999999988765433 26799999999999999999
Q ss_pred cEEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029540 80 DALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
|+|||||||+||.|++ ..|+|||+||++|++.+. ++|||||||||+|+|+|++||++||+||||+|+++.+|+++++
T Consensus 170 D~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~ 247 (287)
T PF01116_consen 170 DALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP--DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFTDALR 247 (287)
T ss_dssp SEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH--TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEecCccccccCCCCCcccCHHHHHHHHHhcC--CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHH
Confidence 9999999999999997 249999999999999983 4999999999999999999999999999999999999999997
Q ss_pred C-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 159 R-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 159 ~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+ |+ .+|+.++..++++|+++++++|++|||.|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~gkA 287 (287)
T PF01116_consen 248 EYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSAGKA 287 (287)
T ss_dssp HHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTTTGC
T ss_pred HHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3 44 5999999999999999999999999999997
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-72 Score=489.43 Aligned_cols=187 Identities=37% Similarity=0.670 Sum_probs=174.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+......+..||||++|++|+++||||
T Consensus 91 ~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD 170 (307)
T PRK05835 91 EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVD 170 (307)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999999999999999999999999998887643333346799999999999999999
Q ss_pred EEEEecCcCCCCCC--CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH---------------------HHHHHHh
Q 029540 81 ALAVCIGNVHGKYP--SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE---------------------LIKGCIE 137 (192)
Q Consensus 81 ~LAvaiGt~HG~y~--~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e---------------------~~~~~i~ 137 (192)
+|||||||+||.|+ + .|+|||+||++|++.+ ++|||||||||+|+| +|++|++
T Consensus 171 ~LAvaiGt~HG~Yk~~~-~p~L~f~~L~~I~~~~---~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~ 246 (307)
T PRK05835 171 YLAPAIGTSHGAFKFKG-EPKLDFERLQEVKRLT---NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVK 246 (307)
T ss_pred EEEEccCccccccCCCC-CCccCHHHHHHHHHHh---CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHH
Confidence 99999999999998 5 5999999999999998 699999999999998 9999999
Q ss_pred cCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 138 RGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
+||+||||+|+++.+|++++++ |+ .||++++..++++|++.++++|++|||.||
T Consensus 247 ~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 306 (307)
T PRK05835 247 GGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANK 306 (307)
T ss_pred cCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999984 33 589999999999999999999999999997
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=476.87 Aligned_cols=188 Identities=35% Similarity=0.628 Sum_probs=174.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||+.||++|++||++||+||||||+|||.||+.... ...||||++|++|+++||||
T Consensus 102 ~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~--~~~~T~peeA~~Fv~~TgvD 179 (321)
T PRK07084 102 KDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE--HHTYTQPEEVEDFVKKTGVD 179 (321)
T ss_pred HHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCc--ccccCCHHHHHHHHHHhCCC
Confidence 4799999999999999999999999999999999999999999999999988764322 45799999999999999999
Q ss_pred EEEEecCcCCCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCC---------------------CCCHHHHHHH
Q 029540 81 ALAVCIGNVHGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGC 135 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgS---------------------G~~~e~~~~~ 135 (192)
+|||||||+||.|+.+ .|+||||||++|++.+. ++|||||||| |+|+|||++|
T Consensus 180 ~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~--~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~ka 257 (321)
T PRK07084 180 SLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP--GFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKA 257 (321)
T ss_pred EEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC--CCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHH
Confidence 9999999999999862 48999999999999983 4999999999 8999999999
Q ss_pred HhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHH-HHhCCCCCC
Q 029540 136 IERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKM-RLFGSSGKA 192 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i-~~~gs~gka 192 (192)
|++||+||||+|+++.||++++++ ++ .||+.++..+++++++.++++| ++|||.||+
T Consensus 258 i~~GI~KINi~Tdl~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~av~~~v~~~i~~~~gs~~ka 321 (321)
T PRK07084 258 AKSAVCKINIDSDGRLAMTAAIRKVFDEKPEEFDPRKYLGPARDELKKLYKHKIINVLGSNGKA 321 (321)
T ss_pred HHcCCceeccchHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 999999999999999999999983 33 5999999999999999999999 899999986
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=467.97 Aligned_cols=185 Identities=50% Similarity=0.775 Sum_probs=172.9
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||+++++||++|++||+|||+|||.+++.... +..||+|++|++|+++||||
T Consensus 86 ~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~--~~~~T~pe~a~~Fv~~TgvD 163 (276)
T cd00947 86 KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD--EGLLTDPEEAEEFVEETGVD 163 (276)
T ss_pred HHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc--cccCCCHHHHHHHHHHHCCC
Confidence 3799999999999999999999999999999999999999999999999888764322 46899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|+++.|+|||+||++|++.+ ++|||||||||+|+|+|++++++||+||||+|+++.+|++++++
T Consensus 164 ~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 240 (276)
T cd00947 164 ALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREY 240 (276)
T ss_pred EEEeccCccccccCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHH
Confidence 99999999999999746999999999999999 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
++ .+|+.++..+++++++.++++|++|||.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s~~ 276 (276)
T cd00947 241 LAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGSAG 276 (276)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22 58999999999999999999999999975
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-69 Score=467.34 Aligned_cols=184 Identities=36% Similarity=0.613 Sum_probs=172.7
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++|++||+|||+|||.||+... . ...||+|++|++|+++||||
T Consensus 91 ~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~-~-~~~~T~pe~a~~Fv~~TgvD 168 (283)
T PRK07998 91 KQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVS-E-ADCKTEPEKVKDFVERTGCD 168 (283)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccc-c-ccccCCHHHHHHHHHHhCcC
Confidence 479999999999999999999999999999999999999999999999988876322 1 46799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ |+||||||++|++.+ ++|||||||||+|+|++++|+++||+||||+|+++.+|++++++
T Consensus 169 ~LAvaiGt~HG~Y~~--p~l~~~~l~~I~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~ 243 (283)
T PRK07998 169 MLAVSIGNVHGLEDI--PRIDIPLLKRIAEVS---PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKA 243 (283)
T ss_pred eeehhccccccCCCC--CCcCHHHHHHHHhhC---CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHH
Confidence 999999999999984 999999999999998 79999999999999999999999999999999999999999973
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
|+ .||++++..+++++++.++++|++|||.||
T Consensus 244 l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~~ 280 (283)
T PRK07998 244 YVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSNHR 280 (283)
T ss_pred HHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33 589999999999999999999999999987
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=474.80 Aligned_cols=190 Identities=29% Similarity=0.345 Sum_probs=170.2
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccc--cccccCCCHHHHHHHhhhhCC-
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE--DYEAKLTDVNQAEEFIDETDI- 79 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~--~~~~~~T~peea~~Fv~~Tgv- 79 (192)
|+++||||||||||++||||||++||+||++||++|++||||||+|||.||+.... ..+..||||++|++||++|||
T Consensus 124 a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~ 203 (350)
T PRK09197 124 GGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKI 203 (350)
T ss_pred cCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCC
Confidence 44445999999999999999999999999999999999999999999888764211 123579999999999999998
Q ss_pred ---cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 ---DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 ---D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|+|||||||+||.|+++.|+|||+||++|++.+.+ .++|||||||||+|+|+|++||++||+||||+|+++
T Consensus 204 ~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 204 SGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred CcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHH
Confidence 99999999999999843699999999999999831 159999999999999999999999999999999999
Q ss_pred HHHHHHhcC-----------------------CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 151 KAYMDSLSR-----------------------PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 151 ~a~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
.+|++++++ ++ .||+.++..++++|+++++++|++|||.||.
T Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k~ 349 (350)
T PRK09197 284 WAFWRGVLDYYFKNYDYLQGQVGNPEGEDKPNKKYYDPRVWLRAAEASMAARLEEAFEDLNSIGVL 349 (350)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCCcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999862 21 4889999999999999999999999999984
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=475.02 Aligned_cols=190 Identities=38% Similarity=0.577 Sum_probs=171.1
Q ss_pred ChhhhcCCCEeEeeCCCC-------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCC-------CCCcccc---cccc
Q 029540 1 MEAIVLGFDSLMVDGSHL-------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTE-------DGLTVED---YEAK 63 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l-------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e-------~~~~~~~---~~~~ 63 (192)
++||++||||||||||+| ||||||++||++|++||++||+||||||+|||.| ++..... .+..
T Consensus 90 ~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~ 169 (347)
T TIGR01521 90 QRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQL 169 (347)
T ss_pred HHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhc
Confidence 479999999999999998 9999999999999999999999999999999776 2211111 1356
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCC---CCHHHHHHHHhhhccCCccEEeecCCCCC-----------
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPN---LKLDLLKDLHALSSKKGVLLVLHGASGLS----------- 128 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~----------- 128 (192)
||+|++|++|+++||||+|||||||+||.|+++ .|+ |||+||++|++.+. ++|||||||||+|
T Consensus 170 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~--~vPLVLHGgSG~p~~~~~~~~~~~ 247 (347)
T TIGR01521 170 LTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP--DTHLVMHGSSSVPQEWLDIINEYG 247 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC--CCCEEEeCCCCCchHhhHHHHhhc
Confidence 999999999999999999999999999999862 254 99999999999883 4999999999988
Q ss_pred ----------HHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 129 ----------AELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 129 ----------~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|||++||++||+||||+|+++.+|++++++ |+ .||++++..++++|+++++++|++|||.|||
T Consensus 248 ~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ka 327 (347)
T TIGR01521 248 GEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAGNA 327 (347)
T ss_pred ccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999999999999973 43 5899999999999999999999999999986
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=473.57 Aligned_cols=190 Identities=38% Similarity=0.627 Sum_probs=170.9
Q ss_pred ChhhhcCCCEeEeeCCCCC-------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCC-------CCCcccc---cccc
Q 029540 1 MEAIVLGFDSLMVDGSHLP-------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTE-------DGLTVED---YEAK 63 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~-------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e-------~~~~~~~---~~~~ 63 (192)
++||++||||||||||+|| |||||++||++|++||++||+||||||+||+.| |+..... .+..
T Consensus 92 ~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~ 171 (347)
T PRK13399 92 QSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQM 171 (347)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccccccc
Confidence 4799999999999999997 999999999999999999999999999999766 3321111 1357
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCC---CCHHHHHHHHhhhccCCccEEeecCCCCC-----------
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPN---LKLDLLKDLHALSSKKGVLLVLHGASGLS----------- 128 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~----------- 128 (192)
||||++|++|+++||||+|||||||+||.|+++ .|+ |||+||++|++.+. ++|||||||||+|
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~--~vPLVLHGgSGvp~~~~~~~~~~g 249 (347)
T PRK13399 172 LTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP--NTHLVMHGSSSVPQELQEIINAYG 249 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC--CCCEEEeCCCCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999852 255 99999999999983 4999999999988
Q ss_pred ----------HHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 129 ----------AELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 129 ----------~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|||++||++||+||||+|+++.+|++++++ ++ .||+.++..++++|+++++++|++|||.||+
T Consensus 250 ~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ka 329 (347)
T PRK13399 250 GKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAGQA 329 (347)
T ss_pred CCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999999999998873 33 5999999999999999999999999999986
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=471.92 Aligned_cols=190 Identities=38% Similarity=0.613 Sum_probs=170.8
Q ss_pred ChhhhcCCCEeEeeCCCC-------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCC-------Ccccc---cccc
Q 029540 1 MEAIVLGFDSLMVDGSHL-------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG-------LTVED---YEAK 63 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l-------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~-------~~~~~---~~~~ 63 (192)
++||++||||||||||+| ||||||++||++|++||++||+||||||+|||.|++ ..... .+..
T Consensus 92 ~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~ 171 (347)
T PRK09196 92 QRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQL 171 (347)
T ss_pred HHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhc
Confidence 379999999999999999 999999999999999999999999999999987632 11111 1356
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCC---CCHHHHHHHHhhhccCCccEEeecCCCC------------
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPN---LKLDLLKDLHALSSKKGVLLVLHGASGL------------ 127 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~------------ 127 (192)
||||+||++||++||||+|||||||+||.|+++ .|+ |||+||++|++.++ ++|||||||||+
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~--~vPLVLHGgSG~~~~~~~~~~~~g 249 (347)
T PRK09196 172 LTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP--NTHLVMHGSSSVPQELLDIINEYG 249 (347)
T ss_pred CCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC--CCCEEEeCCCCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999852 254 99999999999983 599999999988
Q ss_pred ---------CHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 128 ---------SAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 128 ---------~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+|||++||++||+||||+|+++.+|++++++ ++ .||++++..++++++++++++|++|||.||+
T Consensus 250 ~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 329 (347)
T PRK09196 250 GDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAGQA 329 (347)
T ss_pred CCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 88999999999999999999999999998873 33 5899999999999999999999999999985
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-68 Score=470.84 Aligned_cols=190 Identities=28% Similarity=0.371 Sum_probs=169.3
Q ss_pred hhhhcC-----------CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccc--cccCCCHH
Q 029540 2 EAIVLG-----------FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY--EAKLTDVN 68 (192)
Q Consensus 2 ~ai~~G-----------FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~--~~~~T~pe 68 (192)
+||++| |||||||||++||||||++||++|++||++||+||||||+|||.||+...+.. +..||||+
T Consensus 119 ~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPe 198 (357)
T TIGR01520 119 GLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPE 198 (357)
T ss_pred HHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHH
Confidence 577775 99999999999999999999999999999999999999999998886432221 35799999
Q ss_pred HHHHHhhhh----CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh-ccCCcc------EEeecCCCCCHHHHHHHHh
Q 029540 69 QAEEFIDET----DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS-SKKGVL------LVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 69 ea~~Fv~~T----gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~-~~~~iP------LVlHGgSG~~~e~~~~~i~ 137 (192)
||++|+++| |||+|||||||+||.|+++.|+||||||++|++++ +..++| ||||||||+|+|||++||+
T Consensus 199 eA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~ 278 (357)
T TIGR01520 199 DVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALS 278 (357)
T ss_pred HHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHH
Confidence 999999988 88999999999999996336999999999996543 122566 9999999999999999999
Q ss_pred cCCeEeecchHHHHHHHHHhcC---------------------CC---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 138 RGVRKFNVNTEVRKAYMDSLSR---------------------PK---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~~---------------------~~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
+||+||||+|+++.||++++++ |+ .||+.++..++++|+++++++|++|||.||
T Consensus 279 ~GI~KINi~Tdl~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~a~k~~v~~~i~~~gs~~~ 356 (357)
T TIGR01520 279 YGVVKMNIDTDTQWAYWEGILNYYKNNEDYLQGQLGNPKGPDKPNKKFYDPRVWLREGEKSMKARVEKACQELNNINV 356 (357)
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHHHhccccccCccCCcccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999873 22 489999999999999999999999999997
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=469.91 Aligned_cols=190 Identities=26% Similarity=0.331 Sum_probs=170.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCHHHHHHHhhhh--
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDVNQAEEFIDET-- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~peea~~Fv~~T-- 77 (192)
+|+++||||||||||++||||||++||++|++||++||+||+|||+|||.||+..... .+..||||+||++|+++|
T Consensus 118 ~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~ 197 (345)
T cd00946 118 QHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSK 197 (345)
T ss_pred HhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhcc
Confidence 4679999999999999999999999999999999999999999999999888743221 235799999999999998
Q ss_pred --CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHh----hhc---cCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 78 --DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHA----LSS---KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 78 --gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~----~~~---~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
|||+|||||||+||.|+++.|+|||+||++|++ .+. ..++|||||||||+|+|+|++||++||+||||+|+
T Consensus 198 ~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~ 277 (345)
T cd00946 198 ISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTD 277 (345)
T ss_pred CCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcH
Confidence 889999999999999994359999999999954 331 02699999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---------------------CC---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 149 VRKAYMDSLSR---------------------PK---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 149 l~~a~~~~~~~---------------------~~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
++++|++++++ ++ .||+.++..++++|++.++++|++|||.+|
T Consensus 278 l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 344 (345)
T cd00946 278 TQWAYWEGVRNYYLKNEDYLQGQIGNPEGPDKPNKKYYDPRVWLREGEKSMVARVKKAFEDLNSVNK 344 (345)
T ss_pred HHHHHHHHHHHHHhhcchhhccccCCCcccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999873 22 489999999999999999999999999987
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=443.31 Aligned_cols=189 Identities=41% Similarity=0.635 Sum_probs=174.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++|+++||||||||+|+|||||||++|++++++||++|++||+|||+||+.+++......+..||+|+||++|+++||||
T Consensus 85 ~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD 164 (283)
T PRK08185 85 MRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVD 164 (283)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCC
Confidence 37999999999999999999999999999999999999999999999998776532222235799999999999999999
Q ss_pred EEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC
Q 029540 81 ALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~ 159 (192)
+|||||||+||.|+.+ +|+|||++|++|++.+ ++|||||||||+|+|||++|+++||+||||+|+++.+|++++++
T Consensus 165 ~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~ 241 (283)
T PRK08185 165 TLAVAIGTAHGIYPKDKKPELQMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVRE 241 (283)
T ss_pred EEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHH
Confidence 9999999999999863 5999999999999998 69999999999999999999999999999999999999999873
Q ss_pred -----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 -----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .|+++++..++++|++.++++|++|||.||+
T Consensus 242 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~~ka 280 (283)
T PRK08185 242 ILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNSTGKA 280 (283)
T ss_pred HHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 33 5899999999999999999999999999986
|
|
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-65 Score=448.86 Aligned_cols=190 Identities=27% Similarity=0.333 Sum_probs=173.5
Q ss_pred ChhhhcC-----------CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCH
Q 029540 1 MEAIVLG-----------FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDV 67 (192)
Q Consensus 1 ~~ai~~G-----------FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~p 67 (192)
++||++| |||||||||++||||||++|+++|++||++|++||+|||+|||.||+..... .+..||+|
T Consensus 104 ~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~P 183 (340)
T cd00453 104 DGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQP 183 (340)
T ss_pred HHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCH
Confidence 3799999 9999999999999999999999999999999999999999999988754321 24679999
Q ss_pred HHHHHHhhhhC----CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHHHHHHh
Q 029540 68 NQAEEFIDETD----IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 68 eea~~Fv~~Tg----vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
|||++|+++|| ||+|||||||+||.|+++.|+|||+||++|++.++. .++|||||||||+|+|+|+++++
T Consensus 184 eea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~ 263 (340)
T cd00453 184 EDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVS 263 (340)
T ss_pred HHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 99999999999 999999999999999963599999999999999832 15999999999999999999999
Q ss_pred cCCeEeecchHHHHHHHHHhcC-----C------------------C-CChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 138 RGVRKFNVNTEVRKAYMDSLSR-----P------------------K-SDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~~-----~------------------~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
+||+||||+|+++.||++++++ + + .||+.++..++++|+++++++|++|||.+
T Consensus 264 ~Gi~KiNi~Te~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~v~~~i~~~~~~~ 340 (340)
T cd00453 264 YGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAID 340 (340)
T ss_pred cCCeEEEcccHHHHHHHHHHHHHHHhChhhhhhhccCcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999862 3 2 48999999999999999999999999864
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=503.74 Aligned_cols=192 Identities=81% Similarity=1.190 Sum_probs=179.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+......+..||||++|++|+++||||
T Consensus 1186 ~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD 1265 (1378)
T PLN02858 1186 LEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGID 1265 (1378)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCc
Confidence 47999999999999999999999999999999999999999999999999888744333346799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCC
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP 160 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~ 160 (192)
+|||||||+||.|++++|+||||||++|++.++..++|||||||||+|+|+|++||++||+||||+|+++.+|+++++++
T Consensus 1266 ~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~ 1345 (1378)
T PLN02858 1266 ALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEALSSP 1345 (1378)
T ss_pred EEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHHHhCc
Confidence 99999999999999635999999999999998544699999999999999999999999999999999999999999987
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 161 K-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+ .|++.++..++++|++.++++|++|||.||+
T Consensus 1346 ~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~~ka 1378 (1378)
T PLN02858 1346 KKTDLIDVMSAAKEAMKAVVAEKLRLFGSAGKA 1378 (1378)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6 5899999999999999999999999999996
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=419.10 Aligned_cols=188 Identities=40% Similarity=0.672 Sum_probs=173.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc-ccccCCCHHHHHHHhhhhCC
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED-YEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~-~~~~~T~peea~~Fv~~Tgv 79 (192)
++||++||||||||+|++||+|||++|++++++||++|++||+|||+||+.+++..... ..+.||+|++|++|+++|||
T Consensus 91 ~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgv 170 (286)
T PRK06801 91 VRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGI 170 (286)
T ss_pred HHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCc
Confidence 37999999999999999999999999999999999999999999999998876532111 23579999999999999999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~ 159 (192)
|+|||||||+||.|++ .|+|||++|++|++.+ ++|||||||||+|++++++++++||+||||+|+++.+|++++++
T Consensus 171 D~LAvaiGt~Hg~y~~-~~~l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~ 246 (286)
T PRK06801 171 DALAVAIGNAHGKYKG-EPKLDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQ 246 (286)
T ss_pred CEEEeccCCCCCCCCC-CCCCCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHHHHHH
Confidence 9999999999999997 5999999999999988 69999999999999999999999999999999999999999973
Q ss_pred -----CC-C-ChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 -----PK-S-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -----~~-~-~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ . +++.++..+++++++.++++|++|||.||+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 286 (286)
T PRK06801 247 RMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSAGQA 286 (286)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 3 578999999999999999999999999986
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=402.15 Aligned_cols=186 Identities=41% Similarity=0.669 Sum_probs=170.0
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||+|++||+|||+.|++++++||++|++||+|||+|+|.++.... .+.||||+||++|+ +||||
T Consensus 93 ~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g---~s~~t~peea~~f~-~tgvD 168 (293)
T PRK07315 93 LECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIG---KGELAPIEDAKAMV-ETGID 168 (293)
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccC---ccCCCCHHHHHHHH-HcCCC
Confidence 379999999999999999999999999999999999999999999999886765322 12489999999999 89999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+||++|||+||.|+...|.|+|++|++|++.+. ++|||+|||||+|+|++++++++||+||||+|+++.++.+++++
T Consensus 169 ~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~ 246 (293)
T PRK07315 169 FLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP--GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKF 246 (293)
T ss_pred EEeeccccccccCCCCCCcCCHHHHHHHHHhcc--CCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHH
Confidence 999999999999986347899999999999983 49999999999999999999999999999999999999888762
Q ss_pred -------------CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 -------------PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -------------~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..++++|++.++++|++|||.||+
T Consensus 247 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 293 (293)
T PRK07315 247 ARDYEANEAEYDKKKLFDPRKFLAPGVKAIQASVEERIDVFGSANKA 293 (293)
T ss_pred HHhcccccccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 11 4899999999999999999999999999986
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=390.30 Aligned_cols=186 Identities=48% Similarity=0.790 Sum_probs=173.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||+|||||+|++|++||+++|++++++||++|++||+|||.+||.+|.... ....||+||||++|+++||+|
T Consensus 91 ~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g--~~~~~t~~eea~~f~~~tgvD 168 (282)
T TIGR01859 91 IKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDE--KEAELADPDEAEQFVKETGVD 168 (282)
T ss_pred HHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccc--cccccCCHHHHHHHHHHHCcC
Confidence 379999999999999999999999999999999999999999999999987775332 124699999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|.|+|++|++|++.+ ++|||+|||||+|++++++++++||+||||+|+++.+|.+++++
T Consensus 169 ~Lavs~Gt~hg~~~~-~~~l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 169 YLAAAIGTSHGKYKG-EPGLDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKV 244 (282)
T ss_pred EEeeccCccccccCC-CCccCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHH
Confidence 999999999999997 5999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||++++..++++|++.++++|++|||.||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~~~a 282 (282)
T TIGR01859 245 LTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSAGKA 282 (282)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=377.38 Aligned_cols=186 Identities=45% Similarity=0.716 Sum_probs=172.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||+|||||+|++|++||++.|++++++||++|++||+|+||||+.+++.. .....+|+|+||++|+++||+|
T Consensus 91 ~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~--~~g~s~t~~eea~~f~~~tg~D 168 (281)
T PRK06806 91 KEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSE--DIEMLLTSTTEAKRFAEETDVD 168 (281)
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcc--cccceeCCHHHHHHHHHhhCCC
Confidence 37999999999999999999999999999999999999999999999997776532 1234689999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+||+||||+||.|+. .|.|+|++|++|++.+ ++|||+|||||+|++++++++++|++|||+.|+++.++.+++++
T Consensus 169 yLAvaiG~~hg~~~~-~~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~ 244 (281)
T PRK06806 169 ALAVAIGNAHGMYNG-DPNLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNL 244 (281)
T ss_pred EEEEccCCCCCCCCC-CCccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHH
Confidence 999999999999985 5999999999999998 69999999999999999999999999999999999999998873
Q ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|..++++++..++++|++.++++|++|||.||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~~k~ 281 (281)
T PRK06806 245 VLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSENKA 281 (281)
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 446899999999999999999999999999986
|
|
| >KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=305.65 Aligned_cols=188 Identities=41% Similarity=0.543 Sum_probs=164.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCHH----HHHHHhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDVN----QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~pe----ea~~Fv~ 75 (192)
++.+.+|+|+|+|+|++||+|||..|++..+.|++.+++||+|||..||.||++.+++ ....||.|+ ++++|.+
T Consensus 131 ehgEplfsShMlDlSees~~ENis~~k~y~kra~sm~iwvEmEiGitgGeEDGv~n~~~~~~elYt~pe~~~nvyqel~~ 210 (358)
T KOG4153|consen 131 EHGEPLFSSHMLDLSEESFTENISYTKSYTKRARSMNIWVEMEIGITGGEEDGVTNENADKVELYTAPETNVNVYQELME 210 (358)
T ss_pred HhcccchhhhccccccccccccHHHHHHHHHHhhhhhheeheecccccCcccCccccccchhhhhccchhHHHHHHHHhc
Confidence 4678899999999999999999999999999999999999999999999999987432 234677775 4667775
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh-------ccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS-------SKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~-------~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
-+.+|+||++|||+||.|+++.|+|++|+|++.++.+ +++++-||+|||||++..+|+.+|++||.|+|++|+
T Consensus 211 ~~p~fsiAaafGNvHG~Yp~g~~~LkpdlL~ehqays~eq~~~~~~KpvFlVfHGgSGssvnefktgIenGVvKvNvdTd 290 (358)
T KOG4153|consen 211 TGPIFSIAAAFGNVHGKYPKGGPNLKPDLLKEHQAYSREQVGCKSKKPVFLVFHGGSGSSVNEFKTGIENGVVKVNVDTD 290 (358)
T ss_pred cCchHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHHhhcccccCceEEEEeCCCCccHHHHHHHHhcCeEEEeecch
Confidence 5569999999999999998768999999999999987 456899999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---------------------CCC---ChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 149 VRKAYMDSLSR---------------------PKS---DLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 149 l~~a~~~~~~~---------------------~~~---~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.|.||+.++++ |++ ||+.+..+..+.|-+.+...++.|...
T Consensus 291 ~q~AYmeglrdyvl~~kdyvMspvgnpega~kpnKkrfdprvw~~egektm~~~~~~~le~f~t~ 355 (358)
T KOG4153|consen 291 VQTAYMEGLRDYVLTDKDYVMSPVGNPEGAVKPNKKRFDPRVWKAEGEKTMGAKITKSLETFRTT 355 (358)
T ss_pred hHHHHHHHHhhhhccchheeecccCCcccccCCcceecCchhhhhccchhHHHHHHHHHHhhhcc
Confidence 99999999872 222 788888888899988888888877643
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00085 Score=56.33 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=89.9
Q ss_pred hhhhcCCCEe--EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC--CHHHHHHHhhhh
Q 029540 2 EAIVLGFDSL--MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT--DVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSV--M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T--~peea~~Fv~~T 77 (192)
+|+++|.+.| ++.-..++.++.++..+++++.||.+|+.+=.|.-.- |..- ...++ ..+.+.+-..+.
T Consensus 84 ~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~-g~~~-------~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 84 DAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPR-GPAV-------KNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred HHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEecc-CCcc-------cCccCHHHHHHHHHHHHHH
Confidence 6889999977 6665667788999999999999999998876665221 1110 00112 223323335578
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CH----HHHHHHHhcCCeEeecchHHH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SA----ELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~----e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|.|++.+. |+. +++.++++.+.+ ++|+|+=||-+. +. ++++.++++|+.=|-+++.+.
T Consensus 156 GaD~Ik~~-------~~~-----~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 156 GADIVKTK-------YTG-----DAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred CCCEEEec-------CCC-----CHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 99999984 221 678888888776 699999898654 44 458999999999999998885
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0017 Score=57.79 Aligned_cols=134 Identities=15% Similarity=0.222 Sum_probs=91.9
Q ss_pred ChhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ -+++.+.+...++++-.++. +..|-.-+... +...
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~----~~~~- 235 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISAT----DWVE- 235 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccc----ccCC-
Confidence 36889999999998743 15889999999999988863 34444444321 1110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCC--CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH
Q 029540 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKY--PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI 132 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y--~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~ 132 (192)
.-.+++++.+|+ ++.|+|+|.|+.|..+... +. .+..+.+.+++|++.+ ++|++. +|.=.+.+++
T Consensus 236 -----~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~-~~~~~~~~~~~ir~~~---~iPVi~-~G~i~t~~~a 305 (336)
T cd02932 236 -----GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPV-GPGYQVPFAERIRQEA---GIPVIA-VGLITDPEQA 305 (336)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCC-CccccHHHHHHHHhhC---CCCEEE-eCCCCCHHHH
Confidence 113478888875 4569999999988655432 21 2455678889999888 699764 4444467789
Q ss_pred HHHHhcC-CeEeecchHH
Q 029540 133 KGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 133 ~~~i~~G-i~KINi~T~l 149 (192)
.++++.| +.=|-+++.+
T Consensus 306 ~~~l~~g~aD~V~~gR~~ 323 (336)
T cd02932 306 EAILESGRADLVALGREL 323 (336)
T ss_pred HHHHHcCCCCeehhhHHH
Confidence 9999988 6666666554
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0036 Score=54.93 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=99.6
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|. ...+|+++..++++++|+..|..|++.+...-+.+++ ..++|+...
T Consensus 87 ~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~--------~~~~~~~~~ 158 (287)
T PRK05692 87 AALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYE--------GEVPPEAVA 158 (287)
T ss_pred HHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCC--------CCCCHHHHH
Confidence 6888998887655443 3568889999999999999999999988875444432 247888888
Q ss_pred HHhh---hhCCcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEe-
Q 029540 72 EFID---ETDIDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKF- 143 (192)
Q Consensus 72 ~Fv~---~TgvD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KI- 143 (192)
++++ +.|+|.+.++ +|.. .|.-=.++++.|++..+ ++||.+| -..|+.-...-.|++.|+.-|
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~-------~P~~v~~lv~~l~~~~~--~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id 229 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVG-------TPGQVRAVLEAVLAEFP--AERLAGHFHDTYGQALANIYASLEEGITVFD 229 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCcc-------CHHHHHHHHHHHHHhCC--CCeEEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence 8876 5799987664 2222 24434566677777663 3666655 567888899999999999877
Q ss_pred -----------------ecchHHHHHHHHHh
Q 029540 144 -----------------NVNTEVRKAYMDSL 157 (192)
Q Consensus 144 -----------------Ni~T~l~~a~~~~~ 157 (192)
|..|+-..++.+..
T Consensus 230 ~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~ 260 (287)
T PRK05692 230 ASVGGLGGCPYAPGASGNVATEDVLYMLHGL 260 (287)
T ss_pred EEccccCCCCCCCCccccccHHHHHHHHHhc
Confidence 56666666666543
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.016 Score=47.28 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=97.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCccc---------cc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTVE---------DY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~~---------~~ 60 (192)
++++.|.+.|-+|-..++..++++..+++.+.|+.+|+.+=. ++|. ++ .++..... ..
T Consensus 29 ~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad~vh~~-~~~~~~~~~~~~~~~~~~~ 107 (212)
T PRK00043 29 AALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGADGVHLG-QDDLPVADARALLGPDAII 107 (212)
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecC-cccCCHHHHHHHcCCCCEE
Confidence 578899999999999999999999999999999998875543 2332 11 11110000 00
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEec---CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCI---GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvai---Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
.....+++++.+-. +.|+|.+.++- ++.|..+ .+.+.++.++++++..+ ++|++.-| |+..++++++.+
T Consensus 108 g~~~~t~~e~~~a~-~~gaD~v~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~--~~~v~a~G--GI~~~~i~~~~~ 179 (212)
T PRK00043 108 GLSTHTLEEAAAAL-AAGADYVGVGPIFPTPTKKDA---KAPQGLEGLREIRAAVG--DIPIVAIG--GITPENAPEVLE 179 (212)
T ss_pred EEeCCCHHHHHHHh-HcCCCEEEECCccCCCCCCCC---CCCCCHHHHHHHHHhcC--CCCEEEEC--CcCHHHHHHHHH
Confidence 11224677877744 67999997540 1112111 23456899999988773 39999999 557899999999
Q ss_pred cCCeEeecchHHH
Q 029540 138 RGVRKFNVNTEVR 150 (192)
Q Consensus 138 ~Gi~KINi~T~l~ 150 (192)
+|..=|=+++.+.
T Consensus 180 ~Ga~gv~~gs~i~ 192 (212)
T PRK00043 180 AGADGVAVVSAIT 192 (212)
T ss_pred cCCCEEEEeHHhh
Confidence 9999999998874
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0024 Score=53.22 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=84.8
Q ss_pred hhhhcCCCEeEeeCCCCC--HHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029540 2 EAIVLGFDSLMVDGSHLP--FKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~--~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
+|+++|-+-|-+|.+.++ ..+ ...++++.+|+ .++.+=.+ .++++++++ +.+.|
T Consensus 83 ~a~~aGad~I~~d~~~~~~p~~~---~~~~~i~~~~~~~~i~vi~~-------------------v~t~ee~~~-a~~~G 139 (221)
T PRK01130 83 ALAAAGADIIALDATLRPRPDGE---TLAELVKRIKEYPGQLLMAD-------------------CSTLEEGLA-AQKLG 139 (221)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCC---CHHHHHHHHHhCCCCeEEEe-------------------CCCHHHHHH-HHHcC
Confidence 578899998889988764 212 23577888887 66664432 256778865 66789
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+|++.+..+...+.-.. ....+++++++|++.+ ++|++. ++|+ ..+++.++.+.|..=|-++|.+.
T Consensus 140 ~d~i~~~~~g~t~~~~~-~~~~~~~~i~~i~~~~---~iPvia--~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 140 FDFIGTTLSGYTEETKK-PEEPDFALLKELLKAV---GCPVIA--EGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred CCEEEcCCceeecCCCC-CCCcCHHHHHHHHHhC---CCCEEE--ECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 99987643322222111 2345789999999887 699886 4577 47889999999999999998874
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0063 Score=53.36 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=92.0
Q ss_pred ChhhhcCCCEeEeeCCC--------C------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH--------L------------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------l------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+.|-|-+.+ . ++|...+...++++-.++. ++.|-.-+..-...+
T Consensus 148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~----- 222 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP----- 222 (327)
T ss_pred HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC-----
Confidence 36889999999998863 1 4677888888888888763 333333322110000
Q ss_pred ccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH
Q 029540 58 EDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA 129 (192)
Q Consensus 58 ~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~ 129 (192)
.--+++++.++ +++.|+|+|-++-|+....+.. ..+..+++.++.|++.+ ++|++.-|+-.. .
T Consensus 223 -----~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t-~ 293 (327)
T cd02803 223 -----GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRD-P 293 (327)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCC-H
Confidence 01346666555 4567999999998875433321 01356788889999988 699999887653 5
Q ss_pred HHHHHHHhc-CCeEeecchHHH
Q 029540 130 ELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 130 e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
+++.++++. |+.-|-+++.+.
T Consensus 294 ~~a~~~l~~g~aD~V~igR~~l 315 (327)
T cd02803 294 EVAEEILAEGKADLVALGRALL 315 (327)
T ss_pred HHHHHHHHCCCCCeeeecHHHH
Confidence 669999998 688888888764
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.027 Score=44.73 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=95.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCcc--------cccc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTV--------EDYE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~--------~~~~ 61 (192)
++++.|.+.|=+|-...++.+|++..+++.+.++.+|+.+=. +.|. ++........ ....
T Consensus 20 ~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh~~~~~~~~~~~~~~~~~~~~~g 99 (196)
T cd00564 20 AALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVHLGQDDLPVAEARALLGPDLIIG 99 (196)
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCcccCCHHHHHHHcCCCCEEE
Confidence 467889999999999999999999999999999887755433 2221 2111100000 0000
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcC-CCCCCCCC-CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 62 AKLTDVNQAEEFIDETDIDALAVCIGNV-HGKYPSSG-PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~~~-p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
....+++++.+.. +.|+|.+.++ ++ .+.-+.+. +...+++++++++.. ++|++.=| |+..++++++.+.|
T Consensus 100 ~~~~t~~~~~~~~-~~g~d~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pv~a~G--Gi~~~~i~~~~~~G 171 (196)
T cd00564 100 VSTHSLEEALRAE-ELGADYVGFG--PVFPTPTKPGAGPPLGLELLREIAELV---EIPVVAIG--GITPENAAEVLAAG 171 (196)
T ss_pred eeCCCHHHHHHHh-hcCCCEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEC--CCCHHHHHHHHHcC
Confidence 1124688888855 5689998764 22 11111111 456789999998775 69998888 55679999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|-++|.+.
T Consensus 172 a~~i~~g~~i~ 182 (196)
T cd00564 172 ADGVAVISAIT 182 (196)
T ss_pred CCEEEEehHhh
Confidence 99999999885
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.011 Score=54.41 Aligned_cols=120 Identities=22% Similarity=0.204 Sum_probs=80.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|-+.|.+-+.. .+++ ..++++.|+++|+.+-. |.+. ..|+.+.+++.. +.|+|.
T Consensus 76 ~a~~aGAdgV~v~g~~--~~~~---~~~~i~~a~~~G~~~~~--g~~s-------------~~t~~e~~~~a~-~~GaD~ 134 (430)
T PRK07028 76 MAAKAGADIVCILGLA--DDST---IEDAVRAARKYGVRLMA--DLIN-------------VPDPVKRAVELE-ELGVDY 134 (430)
T ss_pred HHHHcCCCEEEEecCC--ChHH---HHHHHHHHHHcCCEEEE--EecC-------------CCCHHHHHHHHH-hcCCCE
Confidence 5788888888864432 1222 35788888888876543 2121 113345555544 569999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+.+..|. .....+...++.|+++++.. ++|++.|| |+..+++..+++.|+.-+=++|.+..
T Consensus 135 I~~~pg~----~~~~~~~~~~~~l~~l~~~~---~iPI~a~G--GI~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 135 INVHVGI----DQQMLGKDPLELLKEVSEEV---SIPIAVAG--GLDAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred EEEEecc----chhhcCCChHHHHHHHHhhC---CCcEEEEC--CCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 9665332 22112334578888888776 69999999 77889999999999999999998863
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=52.92 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred ChhhhcCCCEeEeeC----------CCC----------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDG----------SHL----------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~----------S~l----------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+=+ |.. ++|...+...++++-.++. | ++|--=|+.- + ...
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~---~-~~~- 222 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGD---E-DTE- 222 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh---h-ccC-
Confidence 368899999999888 322 5788889999999998874 3 3444333321 1 110
Q ss_pred ccccccCCCHHHHHHHh---hhhC-CcEEEEecCcCCCC------CCC--CCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029540 58 EDYEAKLTDVNQAEEFI---DETD-IDALAVCIGNVHGK------YPS--SGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~Tg-vD~LAvaiGt~HG~------y~~--~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
.-.+++++.+|+ ++.| +|+|-|+-|+.... ++. ..+..+++.++.|++.+ ++|+..-|+-
T Consensus 223 -----~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~ipvi~~G~i 294 (343)
T cd04734 223 -----GGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV---DLPVFHAGRI 294 (343)
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc---CCCEEeeCCC
Confidence 013567777765 4567 89999998876432 110 01345678888999888 6999999866
Q ss_pred CCCHHHHHHHHhcC-CeEeecchHH
Q 029540 126 GLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 126 G~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
- ..++..++++.| +.=|=++..+
T Consensus 295 ~-~~~~~~~~l~~~~~D~V~~gR~~ 318 (343)
T cd04734 295 R-DPAEAEQALAAGHADMVGMTRAH 318 (343)
T ss_pred C-CHHHHHHHHHcCCCCeeeecHHh
Confidence 4 456699999876 5555555443
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0099 Score=49.51 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC-----eEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM-----LVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv-----~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+++++|.+.||+..+.+. |....++ +++.+|- ++-.-.|.+-.. .. ....-.+|.+..+.+++
T Consensus 90 ~~~~~Gad~vvigs~~l~---dp~~~~~---i~~~~g~~~i~~sid~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~ 157 (234)
T cd04732 90 RLLDLGVSRVIIGTAAVK---NPELVKE---LLKEYGGERIVVGLDAKDGKVATK-GW-----LETSEVSLEELAKRFEE 157 (234)
T ss_pred HHHHcCCCEEEECchHHh---ChHHHHH---HHHHcCCceEEEEEEeeCCEEEEC-CC-----eeecCCCHHHHHHHHHH
Confidence 567899999999887764 3333333 3444543 555444544211 00 01123477788888889
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|+|.+-+.==+.-|.+ ...|++.+++|.+.+ ++|++.-||-..++ +++++.+.|+..+-++|.+.
T Consensus 158 ~ga~~iii~~~~~~g~~----~g~~~~~i~~i~~~~---~ipvi~~GGi~~~~-di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 158 LGVKAIIYTDISRDGTL----SGPNFELYKELAAAT---GIPVIASGGVSSLD-DIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cCCCEEEEEeecCCCcc----CCCCHHHHHHHHHhc---CCCEEEecCCCCHH-HHHHHHHCCCCEEEEeHHHH
Confidence 99998866411122333 225899999999887 69999999888764 49999999999999999884
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0089 Score=54.08 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=91.8
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=-|. .+.+|.++..++++++|+..|..|++-+...-|.++. ..++|+...
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~--------~r~~~~~l~ 200 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIE--------GPVPPSKVA 200 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCcc--------CCCCHHHHH
Confidence 6889999887766443 4689999999999999999999998888765444432 247888888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
++++ +.|+|.+.++ -.=|.- .|.-=.++++.|++..+ .+||-+| -..|+.-...-.|+..|+.-|+.
T Consensus 201 ~~~~~~~~~Gad~I~l~--DT~G~a---~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~ 272 (347)
T PLN02746 201 YVAKELYDMGCYEISLG--DTIGVG---TPGTVVPMLEAVMAVVP--VDKLAVHFHDTYGQALANILVSLQMGISTVDS 272 (347)
T ss_pred HHHHHHHHcCCCEEEec--CCcCCc---CHHHHHHHHHHHHHhCC--CCeEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 7765 4799986654 222221 24444566677776653 2355555 56788889999999999987654
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0089 Score=49.80 Aligned_cols=122 Identities=17% Similarity=0.262 Sum_probs=83.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.|+++|-+-|-+|.+.++..+. ....++++.+++.+ +.+=.+ .++|+++.+. .+.|+|
T Consensus 87 ~a~~aGad~I~~~~~~~~~p~~-~~~~~~i~~~~~~g~~~iiv~-------------------v~t~~ea~~a-~~~G~d 145 (219)
T cd04729 87 ALAAAGADIIALDATDRPRPDG-ETLAELIKRIHEEYNCLLMAD-------------------ISTLEEALNA-AKLGFD 145 (219)
T ss_pred HHHHcCCCEEEEeCCCCCCCCC-cCHHHHHHHHHHHhCCeEEEE-------------------CCCHHHHHHH-HHcCCC
Confidence 5778898988889887642210 13346777777666 443321 3577888664 467999
Q ss_pred EEEEecCcCCCCCCC--CCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHH
Q 029540 81 ALAVCIGNVHGKYPS--SGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~--~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a 152 (192)
++.+. .||.... .....+++.+++|++.+ ++|++. ++|+ +.++++++++.|..=+=++|.+..+
T Consensus 146 ~i~~~---~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia--~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 146 IIGTT---LSGYTEETAKTEDPDFELLKELRKAL---GIPVIA--EGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred EEEcc---CccccccccCCCCCCHHHHHHHHHhc---CCCEEE--eCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 98653 2332221 01335789999999887 699986 4477 5688999999999999999988644
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.041 Score=50.88 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=105.0
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhC----CCeEEEeccccccCCCCC----ccccccccCC
Q 029540 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSK----GMLVEAELGRLSGTEDGL----TVEDYEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~----gv~VEaElG~i~g~e~~~----~~~~~~~~~T 65 (192)
..+++||+-+++|.|.- |.+.=.+++.++.++|-.. |.. ++..+=|.|... .....+-.-|
T Consensus 112 ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~---~~vYvIGTEvP~pGGa~~~~~~~~vT 188 (421)
T PRK15052 112 AYVRAGFSKIHLDASMSCADDPIPLAPETVAERAAVLCQAAESVATDCQRE---QLSYVIGTEVPVPGGEASAIQSVHVT 188 (421)
T ss_pred HHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CceEEeccccCCCCcchhhccccCCC
Confidence 35789999999999987 5566677778777755542 321 333333333211 1111233579
Q ss_pred CHHHHHHHhhhh-------C-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC--CCCH
Q 029540 66 DVNQAEEFIDET-------D-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS--GLSA 129 (192)
Q Consensus 66 ~peea~~Fv~~T-------g-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS--G~~~ 129 (192)
+|+.++.|++.. | |=.|-|--|+--+ .. +.-..|++..+++.+.++. -+||+-+=| =.++
T Consensus 189 ~~e~~~~ti~~h~~af~~~GL~~aw~rvi~vVVQpGvef~-~~-~V~~y~~~~A~~Ls~~~~~--~~lvfEaHSTDYQt~ 264 (421)
T PRK15052 189 RVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFD-HS-NIIHYQPQEAQALSAWIEN--TPMVYEAHSTDYQTR 264 (421)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeeC-CC-CeeecCHHHHHHHHHHhcC--CCEEEeecCcccCCH
Confidence 999999999764 3 4457777777554 22 2466888899999999873 567775555 4788
Q ss_pred HHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029540 130 ELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 130 e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
..++..++.|+.-.||+=.|--++++++-
T Consensus 265 ~al~~lv~dgfaiLKVGPalTfalreAlf 293 (421)
T PRK15052 265 QAYRELVRDHFAILKVGPALTFALREAIF 293 (421)
T ss_pred HHHHHHHhcCceeeeechhHhHHHHHHHH
Confidence 99999999999999999988888877763
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=49.32 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=84.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+++++|++.|.+-.+.+. |... +.++++.+| +++-.--|.+.- . +- . +..-.+|.+..+.+++
T Consensus 89 ~~~~~Ga~~vvlgs~~l~---d~~~---~~~~~~~~g~~~i~~sid~~~~~v~~-~-g~---~-~~~~~~~~~~~~~~~~ 156 (230)
T TIGR00007 89 KLLDLGVDRVIIGTAAVE---NPDL---VKELLKEYGPERIVVSLDARGGEVAV-K-GW---L-EKSEVSLEELAKRLEE 156 (230)
T ss_pred HHHHcCCCEEEEChHHhh---CHHH---HHHHHHHhCCCcEEEEEEEECCEEEE-c-CC---c-ccCCCCHHHHHHHHHh
Confidence 578899999998555543 3433 445555554 223333333311 0 00 0 1112577888888889
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|+|.+-+--=+.=|.+. ..|++++++|.+.+ ++|++.-||-..+++ ++++.+.|+..+-++|.+.
T Consensus 157 ~g~~~ii~~~~~~~g~~~----g~~~~~i~~i~~~~---~ipvia~GGi~~~~d-i~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 157 LGLEGIIYTDISRDGTLS----GPNFELTKELVKAV---NVPVIASGGVSSIDD-LIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCCCEEEEEeecCCCCcC----CCCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHCCCCEEEEeHHHH
Confidence 999976653222224443 24899999999887 699999999887655 7888899999999999875
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.026 Score=46.84 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=85.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|.+.|.++.+.+|. ...+++++.++.+|+.+-.+ .++++++++.. +.|+|.
T Consensus 89 ~~~~~Gad~v~l~~~~~~~----~~~~~~~~~~~~~g~~~~v~-------------------v~~~~e~~~~~-~~g~~~ 144 (217)
T cd00331 89 EARAAGADAVLLIVAALDD----EQLKELYELARELGMEVLVE-------------------VHDEEELERAL-ALGAKI 144 (217)
T ss_pred HHHHcCCCEEEEeeccCCH----HHHHHHHHHHHHcCCeEEEE-------------------ECCHHHHHHHH-HcCCCE
Confidence 5789999999999999997 35577788888888877333 24556777754 568999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+. +.... ....++++++++++.+. .++|++-=||-. +.++++++.++|+.=+=++|.+.
T Consensus 145 i~~t-----~~~~~-~~~~~~~~~~~l~~~~~-~~~pvia~gGI~-s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 145 IGIN-----NRDLK-TFEVDLNTTERLAPLIP-KDVILVSESGIS-TPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred EEEe-----CCCcc-ccCcCHHHHHHHHHhCC-CCCEEEEEcCCC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 9765 33322 24567899999987741 157887666433 44789999999999999999874
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.024 Score=50.45 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=90.1
Q ss_pred ChhhhcCCCEeEeeCCC-------C-------------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH-------L-------------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~-------l-------------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ | ++|...+...++++-.++. | +.|-.-+... +..
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~----~~~-- 229 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA----DFQ-- 229 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH----HcC--
Confidence 37889999999987665 1 4788899999999888853 2 3444433321 110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCC---CC-----CCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029540 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPS---SG-----PNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~---~~-----p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
... -+++++.+|+ ++.|+|+|-|+-|+.+-.+.. .. +....+..++|++.+ ++|+..=|+-
T Consensus 230 ---~~g-~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i- 301 (338)
T cd04733 230 ---RGG-FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT---KTPLMVTGGF- 301 (338)
T ss_pred ---CCC-CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc---CCCEEEeCCC-
Confidence 011 2577777775 567999999998875433311 00 122357778899888 6997775543
Q ss_pred CCHHHHHHHHhcC-CeEeecchHH
Q 029540 127 LSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 127 ~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.+.+++.++++.| +.=|+++..+
T Consensus 302 ~t~~~a~~~l~~g~aD~V~lgR~~ 325 (338)
T cd04733 302 RTRAAMEQALASGAVDGIGLARPL 325 (338)
T ss_pred CCHHHHHHHHHcCCCCeeeeChHh
Confidence 3677899999887 6777777665
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.022 Score=51.03 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=84.7
Q ss_pred ChhhhcCCCEeEeeC----------CCC----------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDG----------SHL----------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~----------S~l----------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+=+ |.. ++|.-.+...++++-.++. | +.|--=|+.. |...
T Consensus 144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~----D~~~- 218 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSML----DLVE- 218 (353)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccc----ccCC-
Confidence 368899999999977 332 4778899999999888863 2 2232222211 1110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029540 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
.-.+++++.+|+ ++.|+|+|.|+.|..-...+.. .+....+..++|++.+ ++|+..-|+- .+.+
T Consensus 219 -----~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i-~~~~ 289 (353)
T cd02930 219 -----GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV---DIPVIASNRI-NTPE 289 (353)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC---CCCEEEcCCC-CCHH
Confidence 124677877775 4579999999988521221110 0112355668898888 6997776653 3567
Q ss_pred HHHHHHhcC-CeEeecchHH
Q 029540 131 LIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 131 ~~~~~i~~G-i~KINi~T~l 149 (192)
++.++++.| +.=|-++..+
T Consensus 290 ~a~~~i~~g~~D~V~~gR~~ 309 (353)
T cd02930 290 VAERLLADGDADMVSMARPF 309 (353)
T ss_pred HHHHHHHCCCCChhHhhHHH
Confidence 899999987 5555544443
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.014 Score=48.44 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=85.6
Q ss_pred hhhhcCCCEeEeeCCC-----------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHH
Q 029540 2 EAIVLGFDSLMVDGSH-----------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
++.++||+-|=+-++. -.++.|.+...++++..++. ++.|-.=+ ..+ .+ . . .+..+
T Consensus 75 ~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~-r~~-~~--------~-~-~~~~~ 142 (231)
T cd02801 75 IVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI-RLG-WD--------D-E-EETLE 142 (231)
T ss_pred HHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE-eec-cC--------C-c-hHHHH
Confidence 5667899999887665 23456777788888777642 22221111 000 00 0 0 13344
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchH
Q 029540 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTE 148 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~ 148 (192)
..+.+++.|+|.|.+.-++..+.|. +..+++.+++|++.+ ++|++.-||-..+ +++.+++.. |+.-|-+++.
T Consensus 143 ~~~~l~~~Gvd~i~v~~~~~~~~~~---~~~~~~~~~~i~~~~---~ipvi~~Ggi~~~-~d~~~~l~~~gad~V~igr~ 215 (231)
T cd02801 143 LAKALEDAGASALTVHGRTREQRYS---GPADWDYIAEIKEAV---SIPVIANGDIFSL-EDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred HHHHHHHhCCCEEEECCCCHHHcCC---CCCCHHHHHHHHhCC---CCeEEEeCCCCCH-HHHHHHHHhcCCCEEEEcHH
Confidence 4445667899999887666554443 334889899999877 6999999976654 558888887 8999999987
Q ss_pred HH
Q 029540 149 VR 150 (192)
Q Consensus 149 l~ 150 (192)
+.
T Consensus 216 ~l 217 (231)
T cd02801 216 AL 217 (231)
T ss_pred hH
Confidence 64
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.036 Score=45.01 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=82.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.++++|.+.+-+.+...+ ....+++++|+.+|+.+-.++ + ...+|+++.+ ....|+|.
T Consensus 72 ~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~~~g~~~~v~~--~--------------~~~t~~e~~~-~~~~~~d~ 129 (202)
T cd04726 72 MAFKAGADIVTVLGAAPL-----STIKKAVKAAKKYGKEVQVDL--I--------------GVEDPEKRAK-LLKLGVDI 129 (202)
T ss_pred HHHhcCCCEEEEEeeCCH-----HHHHHHHHHHHHcCCeEEEEE--e--------------CCCCHHHHHH-HHHCCCCE
Confidence 478899999988876643 234678888998886443331 1 1356788887 66679998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+.-+. .+.-.+ ....++.++++++.. ++|++.=| |+..++++++.+.|+.-+=++|.+.
T Consensus 130 v~~~~~~-~~~~~~--~~~~~~~i~~~~~~~---~~~i~~~G--GI~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 130 VILHRGI-DAQAAG--GWWPEDDLKKVKKLL---GVKVAVAG--GITPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred EEEcCcc-cccccC--CCCCHHHHHHHHhhc---CCCEEEEC--CcCHHHHHHHHhcCCCEEEEeehhc
Confidence 8773221 111110 234567788887654 69999999 5568999999999999999999884
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.05 Score=50.31 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=102.1
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhC-----CCeEEEeccccccCCCCCc----cccccccC
Q 029540 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSK-----GMLVEAELGRLSGTEDGLT----VEDYEAKL 64 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~-----gv~VEaElG~i~g~e~~~~----~~~~~~~~ 64 (192)
..+++||+-+++|.|.- |.+.=.+++.++.++|-+. |.. ++..|=|.|.... ....+-.-
T Consensus 111 ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~---~~vYvIGTEvP~pGGa~~~~~~~~v 187 (420)
T TIGR02810 111 AYVEAGFTKIHLDASMGCAGDPAPLDDATVAERAARLCAVAEAAATDRRGET---KPVYVIGTEVPVPGGALEALQTLAV 187 (420)
T ss_pred HHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHHhcCCC---CCeEEeccccCCCCchhhhccccCC
Confidence 35789999999999987 5566677777777755432 321 2333333332111 11122346
Q ss_pred CCHHHHHHHhhhh-------C-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEe--ecCCCCC
Q 029540 65 TDVNQAEEFIDET-------D-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL--HGASGLS 128 (192)
Q Consensus 65 T~peea~~Fv~~T-------g-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl--HGgSG~~ 128 (192)
|+|+.++.|++.. | |=.|-|--|+.-+-- +.-..|++..+++.+.++..+ .||. |-+-=.+
T Consensus 188 Ts~e~~~~ti~~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~--~V~~y~~~~A~~Ls~~~~~~~-~lvfEaHSTDYQt 264 (420)
T TIGR02810 188 TTPEAARATLRAHRKAFAARGLEDAWPRVIALVVQPGVEFDHH--NVIHYQPERAQALSQVIDNTP-GLVFEAHSTDYQT 264 (420)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeECCC--ceeecCHHHHHHHHHHHHhCC-CceeecCCccCCC
Confidence 9999999999764 3 445777777732211 235678888999999886322 2665 5566688
Q ss_pred HHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029540 129 AELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 129 ~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+..++..++.|+.-.||+=.|--++++++-
T Consensus 265 ~~al~~lv~dgfaiLKVGPalTfalreAlf 294 (420)
T TIGR02810 265 PAALRALVRDHFAILKVGPALTFALREALF 294 (420)
T ss_pred HHHHHHHHhcCceeeeechhHhHHHHHHHH
Confidence 999999999999999999888777777753
|
Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.018 Score=50.18 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=90.7
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|-+=.|.- +.++++....+.+++|+..|..|++-+...-+.++. ..++|+...
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~--------~~~~~~~~~ 152 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYE--------GEVPPERVA 152 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCC--------CCCCHHHHH
Confidence 68889988775544433 479999999999999999999999888866554442 236888777
Q ss_pred HHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 72 EFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++++ -|+|.+.++ -.-|.- .|.-=.++++.|++..+ ++||-+|+ ..|+.-...-.|++.|+.-|+
T Consensus 153 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 153 EVAERLLDLGCDEISLG--DTIGVA---TPAQVRRLLEAVLERFP--DEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred HHHHHHHHcCCCEEEEC--CCCCcc---CHHHHHHHHHHHHHHCC--CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 76554 689887665 222221 24444556677776653 37776665 568888889999999998776
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.047 Score=49.66 Aligned_cols=145 Identities=19% Similarity=0.283 Sum_probs=90.6
Q ss_pred ChhhhcCCCEeEeeCCC---C------------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccc---cccCCC
Q 029540 1 MEAIVLGFDSLMVDGSH---L------------------PFKDNISHTKYISFLAHSK---GMLVEAELGR---LSGTED 53 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~---l------------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~---i~g~e~ 53 (192)
++|.++||+.|-|=+.+ | ++|.-.+.+.+|++-.++. +..|-.=+.. +.+.++
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 37889999999998754 3 5789999999999988863 2233322221 001000
Q ss_pred CC-ccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCC-----CCCCCHHHHHHHHhhhccCCccEEeecC
Q 029540 54 GL-TVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSS-----GPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 54 ~~-~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~-----~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
.. ..++....--+++++.+++ ++.|+|+|-|+.|+....|... .+....+..+.|++.+ ++|++.-|+
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~ 313 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV---DVPVIMAGR 313 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC---CCCEEEeCC
Confidence 00 0000001123667766664 4679999999999854322111 1223356778899888 699999997
Q ss_pred CCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 125 SGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 125 SG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
-- ..++..++++.| +.=|-++..+
T Consensus 314 i~-~~~~~~~~l~~g~~D~V~~gR~~ 338 (382)
T cd02931 314 ME-DPELASEAINEGIADMISLGRPL 338 (382)
T ss_pred CC-CHHHHHHHHHcCCCCeeeechHh
Confidence 75 556788888877 5566665554
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.048 Score=44.61 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=81.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec-cccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL-GRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl-G~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+.|-+.+-.-+ ....+++++|+++|+.+-.++ + ..|.+++++...+ .|+|
T Consensus 71 ~~~~~Gad~i~vh~~~~~-----~~~~~~i~~~~~~g~~~~~~~~~----------------~~t~~~~~~~~~~-~g~d 128 (206)
T TIGR03128 71 QAFAAGADIVTVLGVADD-----ATIKGAVKAAKKHGKEVQVDLIN----------------VKDKVKRAKELKE-LGAD 128 (206)
T ss_pred HHHHcCCCEEEEeccCCH-----HHHHHHHHHHHHcCCEEEEEecC----------------CCChHHHHHHHHH-cCCC
Confidence 568899998887765421 233678889999998776642 2 1355677777654 4999
Q ss_pred EEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+.+- +| |++ ......++.++++++..+ .++++.=| |+..+.+..+.+.|+.-+-+++.+.
T Consensus 129 ~v~~~----pg-~~~~~~~~~~~~~i~~l~~~~~--~~~i~v~G--GI~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 129 YIGVH----TG-LDEQAKGQNPFEDLQTILKLVK--EARVAVAG--GINLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred EEEEc----CC-cCcccCCCCCHHHHHHHHHhcC--CCcEEEEC--CcCHHHHHHHHHcCCCEEEEeehhc
Confidence 88652 22 211 112245677888887764 35665467 6788999999999999999998874
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.027 Score=47.27 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=84.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC--eEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM--LVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv--~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++++|.+-|++....++ |....+++++....-.+ ++..--|.+.-. +. . +..-.+|.+..+.+++-|+
T Consensus 93 ~~~~~Ga~~v~iGs~~~~---~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~--g~---~-~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 93 SLLDLGVDRVILGTAAVE---NPEIVRELSEEFGSERVMVSLDAKDGEVVIK--GW---T-EKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred HHHHcCCCEEEEChHHhh---ChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC--CC---c-ccCCCCHHHHHHHHHHcCC
Confidence 578999999999887764 33344444444322112 343322333211 00 0 1112367777777788999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|.+-+.=-+.=|.+ ...|++.|+++.+.+ ++|++.-||-..+++ +.++.+.|+..+-++|.+.
T Consensus 164 ~~i~~~~~~~~g~~----~g~~~~~i~~i~~~~---~iPvia~GGI~~~~d-i~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 164 GSILFTNVDVEGLL----EGVNTEPVKELVDSV---DIPVIASGGVTTLDD-LRALKEAGAAGVVVGSALY 226 (241)
T ss_pred CEEEEEeecCCCCc----CCCCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHcCCCEEEEEHHHh
Confidence 98864211112222 235899999999887 699999997775555 7789999999999999884
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.022 Score=53.08 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=83.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~Tg 78 (192)
+|+++|.+.|-+=-|.-+. +| .++.+++|+..|..|++-+....+ .+++++-..+++ .+.|
T Consensus 104 ~A~~~Gvd~irif~~lnd~-~n---~~~~v~~ak~~G~~v~~~i~~t~~------------p~~~~~~~~~~a~~l~~~G 167 (448)
T PRK12331 104 KSVENGIDIIRIFDALNDV-RN---LETAVKATKKAGGHAQVAISYTTS------------PVHTIDYFVKLAKEMQEMG 167 (448)
T ss_pred HHHHCCCCEEEEEEecCcH-HH---HHHHHHHHHHcCCeEEEEEEeecC------------CCCCHHHHHHHHHHHHHcC
Confidence 5789999887654444444 36 455799999999998887755431 135665544443 4579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+|.|.++ -.=|.- .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-+|++.|+.-|...
T Consensus 168 ad~I~i~--Dt~G~l---~P~~v~~lv~alk~~~---~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 168 ADSICIK--DMAGIL---TPYVAYELVKRIKEAV---TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred CCEEEEc--CCCCCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence 9988775 222322 2444456677777776 58888877 78999999999999999988653
|
|
| >PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.13 Score=47.77 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=101.6
Q ss_pred hhhcCCCEeEeeCCCC------CH--HHHHHHHHHHHHHHHhC-----CCeEEEeccccccCCCCCc----cccccccCC
Q 029540 3 AIVLGFDSLMVDGSHL------PF--KDNISHTKYISFLAHSK-----GMLVEAELGRLSGTEDGLT----VEDYEAKLT 65 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l------~~--eeNi~~Tk~vv~~Ah~~-----gv~VEaElG~i~g~e~~~~----~~~~~~~~T 65 (192)
.+++||+-+++|.|.- |+ +.=.+++.++.++|-+. |.. ++..|=|.|.... ....+-.-|
T Consensus 116 yV~AGF~kIHLD~Sm~cagdp~pL~d~~vA~Raa~L~~~aE~~a~~~~~~~---~~vYvIGTEvP~pGGa~~~~~~~~vT 192 (426)
T PRK15458 116 YVAAGFKKIHLDCSMSCADDPIPLTDEIVAERAARLAKIAEETCREHFGES---DLVYVIGTEVPVPGGAHETLSELAVT 192 (426)
T ss_pred HHHcCCceEEecCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCCC---CCeEEeccccCCCCchhhhccccCCC
Confidence 5789999999999975 44 66677777777755432 221 2333333332111 111223469
Q ss_pred CHHHHHHHhhhh-------C-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEe--ecCCCCCH
Q 029540 66 DVNQAEEFIDET-------D-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL--HGASGLSA 129 (192)
Q Consensus 66 ~peea~~Fv~~T-------g-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl--HGgSG~~~ 129 (192)
+|+.++.|++.. | |=.|-|--|+-=+. . +.-..|++..+++.+.++.. -+||. |-+-=.++
T Consensus 193 s~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~-~-~V~~y~~~~A~~Ls~~~~~~-~~lvfEaHSTDYQt~ 269 (426)
T PRK15458 193 TPDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDH-T-NVIDYQPEKASALSQMVENY-ETLVFEAHSTDYQTP 269 (426)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecC-c-CccccCHHHHHHHHHHHHhC-CCceeecCCccCCCH
Confidence 999999999754 4 44567777775443 2 24567888889999888632 23565 55666889
Q ss_pred HHHHHHHhcCCeEeecchHHHHHHHHHh
Q 029540 130 ELIKGCIERGVRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 130 e~~~~~i~~Gi~KINi~T~l~~a~~~~~ 157 (192)
..++..++.|+.-.||+=.|--++++++
T Consensus 270 ~al~~lv~dgfaiLKVGPaLTfalReAl 297 (426)
T PRK15458 270 QALRQLVIDHFAILKVGPALTFALREAL 297 (426)
T ss_pred HHHHHHHhcCceeeeechhHhHHHHHHH
Confidence 9999999999999999998887777775
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=49.27 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|.+..+++.+.|+|.|-+. ..++.+.. ..-+++.|++|.+.. ++||.+|||-- +.+++++++..|..+|
T Consensus 31 ~~~~~e~a~~~~~~G~~~l~i~--dl~~~~~~--~~~~~~~i~~i~~~~---~~~l~v~GGi~-~~~~~~~~~~~Ga~~v 102 (241)
T PRK13585 31 YGDPVEVAKRWVDAGAETLHLV--DLDGAFEG--ERKNAEAIEKIIEAV---GVPVQLGGGIR-SAEDAASLLDLGVDRV 102 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--echhhhcC--CcccHHHHHHHHHHc---CCcEEEcCCcC-CHHHHHHHHHcCCCEE
Confidence 4589888888888999998544 55554432 445788888888777 69999999877 5577999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|.+.
T Consensus 103 ~iGs~~~ 109 (241)
T PRK13585 103 ILGTAAV 109 (241)
T ss_pred EEChHHh
Confidence 9999775
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.70 E-value=0.026 Score=47.14 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=80.3
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
-+++|.+-|-+|+..-|=. ....++++..|..+..+=|++. +.||++. ..+-|+|++
T Consensus 60 l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~~l~MADis-------------------t~ee~~~-A~~~G~D~I 116 (192)
T PF04131_consen 60 LAEAGADIIALDATDRPRP---ETLEELIREIKEKYQLVMADIS-------------------TLEEAIN-AAELGFDII 116 (192)
T ss_dssp HHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCTSEEEEE-S-------------------SHHHHHH-HHHTT-SEE
T ss_pred HHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhCcEEeeecC-------------------CHHHHHH-HHHcCCCEE
Confidence 4689999999999988655 5667888999988766655543 4466665 668899986
Q ss_pred EEecCcCCCCCCCC--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 83 AVCIGNVHGKYPSS--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 83 AvaiGt~HG~y~~~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+- .=-.|.+. ...-||++++++.+. ++|++.-|.-..| ++.++|+++|..-|=|+|.+-.
T Consensus 117 ~T----TLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~tp-e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 117 GT----TLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRIHTP-EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp E-----TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS--SH-HHHHHHHHTT-SEEEE-HHHH-
T ss_pred Ec----ccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCCH-HHHHHHHhcCCeEEEECcccCC
Confidence 64 33446432 245689999999874 5999999987765 5699999999999999998743
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.047 Score=49.06 Aligned_cols=129 Identities=11% Similarity=0.189 Sum_probs=82.5
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC-C------CeEEEeccccccCCC
Q 029540 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK-G------MLVEAELGRLSGTED 53 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~-g------v~VEaElG~i~g~e~ 53 (192)
++|.++||+.|-+-+.| . ++|...+...|+++-.++. | +.|---|+ .. +
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s---~~-~ 226 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS---PE-E 226 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC---cc-c
Confidence 36889999999998743 1 5788899999999888763 2 22222222 11 1
Q ss_pred CCccccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029540 54 GLTVEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 54 ~~~~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
... .- .++++..+| +++.|+|+|.|+.|+.+..-.. .+....+.++.|++.+. .++|++.-|+-.. .+
T Consensus 227 ~~~-----~g-~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~-~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t-~e 297 (353)
T cd04735 227 PEE-----PG-IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRR-GRDDNQTIMELVKERIA-GRLPLIAVGSINT-PD 297 (353)
T ss_pred ccC-----CC-CCHHHHHHHHHHHHHcCCCEEEeccCcccccccc-CCcchHHHHHHHHHHhC-CCCCEEEECCCCC-HH
Confidence 110 01 235666655 4567999999999876542111 13335667778887763 2589999886544 56
Q ss_pred HHHHHHhcCCeE
Q 029540 131 LIKGCIERGVRK 142 (192)
Q Consensus 131 ~~~~~i~~Gi~K 142 (192)
+..++++.|+.=
T Consensus 298 ~ae~~l~~gaD~ 309 (353)
T cd04735 298 DALEALETGADL 309 (353)
T ss_pred HHHHHHHcCCCh
Confidence 688998887443
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.061 Score=47.99 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=80.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|.+-|-+|.++-.-+ ...++++..++.+ +.|=+ | .-+++++|++ +.+.|+
T Consensus 101 ~l~eagv~~I~vd~~~G~~~----~~~~~i~~ik~~~p~v~Vi~--G----------------~v~t~~~A~~-l~~aGa 157 (325)
T cd00381 101 ALVEAGVDVIVIDSAHGHSV----YVIEMIKFIKKKYPNVDVIA--G----------------NVVTAEAARD-LIDAGA 157 (325)
T ss_pred HHHhcCCCEEEEECCCCCcH----HHHHHHHHHHHHCCCceEEE--C----------------CCCCHHHHHH-HHhcCC
Confidence 46788999999998764332 2233444444332 32222 1 2367788877 457999
Q ss_pred cEEEEecCc--CC-CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGN--VH-GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt--~H-G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|+|.|.+|. .| +....+...-++..|.++.+.....++|++--||-..+ .++.+++.+|..=+-++|.+.
T Consensus 158 D~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~-~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 158 DGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTS-GDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred CEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCH-HHHHHHHHcCCCEEEecchhc
Confidence 999987653 11 11100011226777888877765446999988876655 559999999999999988874
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.049 Score=47.19 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=85.2
Q ss_pred hhhhcCCCEeEeeCC----------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGS----------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=-| ..+.+|++...++++++|+..|..|+.=+-.. ..++|+...
T Consensus 79 ~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda--------------~r~~~~~l~ 144 (262)
T cd07948 79 IAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDS--------------FRSDLVDLL 144 (262)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee--------------CCCCHHHHH
Confidence 688899998887544 34578999999999999999998776654222 335677776
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
++++ +.|+|.+- +.-.=|.- .|.-=.++++.|++.. ++||-+|+ .-|+.-.....|++.|+.-|+
T Consensus 145 ~~~~~~~~~g~~~i~--l~Dt~G~~---~P~~v~~~~~~~~~~~---~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd 214 (262)
T cd07948 145 RVYRAVDKLGVNRVG--IADTVGIA---TPRQVYELVRTLRGVV---SCDIEFHGHNDTGCAIANAYAALEAGATHID 214 (262)
T ss_pred HHHHHHHHcCCCEEE--ECCcCCCC---CHHHHHHHHHHHHHhc---CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 6654 46888654 43443432 2443445566777665 57877776 578888999999999998764
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.12 Score=43.65 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=100.0
Q ss_pred hhhhcC-CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCccc------c--c
Q 029540 2 EAIVLG-FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVE------D--Y 60 (192)
Q Consensus 2 ~ai~~G-FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~------~--~ 60 (192)
++++.| -+.|-+=.-.++-++-.+..+++.++|+++|+.+=- ++| |+|......... . -
T Consensus 34 ~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~~dlA~~~~adGVHLg~~d~~~~~~r~~~~~~~ii 113 (221)
T PRK06512 34 AALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGDSRIAGRVKADGLHIEGNLAALAEAIEKHAPKMIV 113 (221)
T ss_pred HHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCHHHHHHHhCCCEEEECccccCHHHHHHhcCCCCEE
Confidence 578889 699999888899999999999999999999877643 333 343221111100 0 0
Q ss_pred c-ccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 61 E-AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~-~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
. +..++.+++.+ ..+.|+|.+++ |-+.-.-|...+..-+++++.+.+.+ ++|+|-=| |+..+++..+.+.|
T Consensus 114 G~s~~~s~~~a~~-A~~~gaDYv~~--Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIG--GI~~~n~~~~~~~G 185 (221)
T PRK06512 114 GFGNLRDRHGAME-IGELRPDYLFF--GKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQA--GSDLASAVEVAETG 185 (221)
T ss_pred EecCCCCHHHHHH-hhhcCCCEEEE--CCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEe--CCCHHHHHHHHHhC
Confidence 1 12457788777 55789999875 44421112222446788888888777 69999999 78999999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
..=|=+-+.+.
T Consensus 186 A~giAvisai~ 196 (221)
T PRK06512 186 AEFVALERAVF 196 (221)
T ss_pred CCEEEEhHHhh
Confidence 99998877774
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.087 Score=46.16 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|+. +.+.|+|++.++- ||........-.++.|.+|++.++. ++|++.-||-..+.+ +.+++.+|..=|-
T Consensus 181 ~s~~~a~~-a~~~G~d~I~v~~---~gG~~~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d-~~kal~lGAd~V~ 254 (299)
T cd02809 181 LTPEDALR-AVDAGADGIVVSN---HGGRQLDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTD-VLKALALGADAVL 254 (299)
T ss_pred CCHHHHHH-HHHCCCCEEEEcC---CCCCCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHH-HHHHHHcCCCEEE
Confidence 57888876 5588999999873 4432211123468889999887631 499999998877755 7888899999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
++|.+..+... . . .+-.....+.+++.++..|.++|+.
T Consensus 255 ig~~~l~~~~~---~-g---~~~v~~~i~~l~~el~~~m~~~G~~ 292 (299)
T cd02809 255 IGRPFLYGLAA---G-G---EAGVAHVLEILRDELERAMALLGCA 292 (299)
T ss_pred EcHHHHHHHHh---c-C---HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99988766542 1 1 1233445677888888899988864
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.062 Score=45.73 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=87.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec--cccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL--GRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl--G~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+.+++|++.|-+-.+.+. |....+++++..... +.|--.+ |.+-. .+ +.....+|.+..+.+++-|+
T Consensus 92 ~~l~~Ga~kvviGs~~l~---~p~l~~~i~~~~~~~-i~vsld~~~~~v~~--~G-----w~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 92 AALATGCARVNIGTAALE---NPEWCARVIAEHGDR-VAVGLDVRGHTLAA--RG-----WTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred HHHHCCCCEEEECchHhC---CHHHHHHHHHHhhhh-EEEEEEEeccEecc--CC-----eeecCccHHHHHHHHHhcCC
Confidence 568899999988666554 333444555443321 3222222 33311 01 11123577777777789999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH---hcCCeEeecchHHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI---ERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i---~~Gi~KINi~T~l~ 150 (192)
+.|.+-==+.-|.|.+ | |++.++++.+.+ ++|+..-||-+.+++ +.++. +.|+..+=+++.+.
T Consensus 161 ~~iiv~~~~~~g~~~G--~--d~~~i~~i~~~~---~ipviasGGi~s~~D-~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 161 SRYVVTDVTKDGTLTG--P--NLELLREVCART---DAPVVASGGVSSLDD-LRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred CEEEEEeecCCCCccC--C--CHHHHHHHHhhC---CCCEEEeCCCCCHHH-HHHHhhhccCCccEEEEeHHHH
Confidence 9999876667777763 5 899999999887 699999999987766 55553 46999999998874
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.17 Score=43.32 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=95.5
Q ss_pred hhhhcCCCEeEeeCCCCC----------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHLP----------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~----------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|++-|-+=.|.-+ -++.+...++++++|+..|..|. ++. ++ ...++|+...
T Consensus 77 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~----~~--------~~~~~~~~~~ 142 (259)
T cd07939 77 AALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA----ED--------ASRADPDFLI 142 (259)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee----cc--------CCCCCHHHHH
Confidence 567888887766544443 36778899999999999998664 222 22 1347888888
Q ss_pred HHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe---
Q 029540 72 EFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF--- 143 (192)
Q Consensus 72 ~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI--- 143 (192)
+++++ -|+|.+.++ -.=|.. .|.-=.++++.+++.. ++||-+|+ ..|+.......|++.|+.-|
T Consensus 143 ~~~~~~~~~G~~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~---~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s 214 (259)
T cd07939 143 EFAEVAQEAGADRLRFA--DTVGIL---DPFTTYELIRRLRAAT---DLPLEFHAHNDLGLATANTLAAVRAGATHVSVT 214 (259)
T ss_pred HHHHHHHHCCCCEEEeC--CCCCCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEe
Confidence 88764 588876553 222222 1322234455666655 47777766 56888888999999998876
Q ss_pred ---------ecchHHHHHHHHHh-c-CCCCChHHHHH
Q 029540 144 ---------NVNTEVRKAYMDSL-S-RPKSDLIHLMA 169 (192)
Q Consensus 144 ---------Ni~T~l~~a~~~~~-~-~~~~~~~~~~~ 169 (192)
|..|+....+.+.. . +.+.|+..+..
T Consensus 215 ~~G~G~~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~ 251 (259)
T cd07939 215 VNGLGERAGNAALEEVVMALKHLYGRDTGIDTTRLPE 251 (259)
T ss_pred cccccccccCcCHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 56777777777665 2 23346555544
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.074 Score=44.77 Aligned_cols=135 Identities=24% Similarity=0.277 Sum_probs=93.3
Q ss_pred hhhhcCCCEeE--eeCC--------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLM--VDGS--------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM--~D~S--------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
++.++|++.|. +++| ....++++....+.+++|++.|..|+.-+-.+.. ..++|++..
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------------~~~~~~~l~ 149 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG------------CKTDPEYVL 149 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC------------CCCCHHHHH
Confidence 56777876654 5666 3567789999999999999999888776654432 136666666
Q ss_pred HHhh---hhCCcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe-
Q 029540 72 EFID---ETDIDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF- 143 (192)
Q Consensus 72 ~Fv~---~TgvD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI- 143 (192)
++++ +-|+|.+-++ +|.. .|.-=.++++.+++..+ ++||.+|+ .-|+.......|+..|+.-|
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G~~-------~P~~v~~li~~l~~~~~--~~~~~~H~Hn~~gla~an~laA~~aG~~~id 220 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVGLA-------TPEEVAELVKALREALP--DVPLGLHTHNTLGLAVANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHcCCCEEEechhcCCc-------CHHHHHHHHHHHHHhCC--CCeEEEEeCCCCChHHHHHHHHHHcCCCEEE
Confidence 6654 5789887764 3331 24434455677777763 38899888 45777888899999998776
Q ss_pred -----------ecchHHHHHHHHHh
Q 029540 144 -----------NVNTEVRKAYMDSL 157 (192)
Q Consensus 144 -----------Ni~T~l~~a~~~~~ 157 (192)
|..|+....+.+..
T Consensus 221 ~s~~G~G~~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 221 GSVNGLGERAGNAATEDLVAALEGL 245 (265)
T ss_pred eccccccccccCccHHHHHHHHHhc
Confidence 45666666665554
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.064 Score=46.55 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCC-------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029540 2 EAIVLGFDSLMVDGSH-------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
++.++||+-|-+-.|. ..+..+.+.+.++++..++. +++|=.=|+- ..++..+..+.
T Consensus 110 ~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~---------------~~~~~~~~a~~ 174 (296)
T cd04740 110 KLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP---------------NVTDIVEIARA 174 (296)
T ss_pred HHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC---------------CchhHHHHHHH
Confidence 4556788888776553 23556778888888888876 6665555431 12345565666
Q ss_pred hhhhCCcEEEEecCcCC-----------------CCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 74 IDETDIDALAVCIGNVH-----------------GKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~H-----------------G~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++.|+|.+.+ ++|.+ |.|.+. ...+.++.+++|++.+ ++|++-=||--.+ +++.++
T Consensus 175 ~~~~G~d~i~~-~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~GGI~~~-~da~~~ 249 (296)
T cd04740 175 AEEAGADGLTL-INTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGVGGIASG-EDALEF 249 (296)
T ss_pred HHHcCCCEEEE-ECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEECCCCCH-HHHHHH
Confidence 78899999865 33322 344321 0124567788888877 6999877755444 779999
Q ss_pred HhcCCeEeecchHHH
Q 029540 136 IERGVRKFNVNTEVR 150 (192)
Q Consensus 136 i~~Gi~KINi~T~l~ 150 (192)
+..|..=|-++|.+.
T Consensus 250 l~~GAd~V~igra~l 264 (296)
T cd04740 250 LMAGASAVQVGTANF 264 (296)
T ss_pred HHcCCCEEEEchhhh
Confidence 999999999999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.05 Score=49.42 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=85.1
Q ss_pred hhhhcCCCEeEeeCCCCC----------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHLP----------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~----------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|++.|-+=.|.-+ .+|+++..++.+++|+..|..|.. + .+| ...++|+...
T Consensus 83 ~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~--~----~ed--------~~r~~~~~l~ 148 (378)
T PRK11858 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF--S----AED--------ASRTDLDFLI 148 (378)
T ss_pred HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--E----ecc--------CCCCCHHHHH
Confidence 578889988776555444 599999999999999999977654 2 222 1357888888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC--CCCCHHHHHHHHhcCCeEeec
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA--SGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg--SG~~~e~~~~~i~~Gi~KINi 145 (192)
++++ +.|+|.+.++ -|+ |.- .|.-=.++++.+++.+ ++||-+|+= .|+.-...-.|+..|+.-|+.
T Consensus 149 ~~~~~~~~~Ga~~I~l~-DT~-G~~---~P~~v~~lv~~l~~~~---~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~ 219 (378)
T PRK11858 149 EFAKAAEEAGADRVRFC-DTV-GIL---DPFTMYELVKELVEAV---DIPIEVHCHNDFGMATANALAGIEAGAKQVHT 219 (378)
T ss_pred HHHHHHHhCCCCEEEEe-ccC-CCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEE
Confidence 8865 4689987765 222 322 2433345556666665 588887764 567777888899999888753
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.066 Score=48.45 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=85.5
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|-|-+.|- ++|.=.+...||++-.++. |-. - || +|...+ ...
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~--~-igvRis~~~-~~~-- 239 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD--R-IGIRISPLG-TFN-- 239 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC--e-EEEEECCcc-ccc--
Confidence 478999999999998883 5777788999999988763 211 1 22 222211 000
Q ss_pred cccccCCCHHH-HHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029540 59 DYEAKLTDVNQ-AEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 59 ~~~~~~T~pee-a~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
..+.- .+++| +.++ +++.|||+|-|+.|..|+. +.+..+.-++|++.+ ++|+..-|+ .+.++..+
T Consensus 240 ~~~~G-~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-----~~~~~~~~~~ik~~~---~~pv~~~G~--~~~~~ae~ 308 (362)
T PRK10605 240 NVDNG-PNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-----EPYSDAFREKVRARF---HGVIIGAGA--YTAEKAET 308 (362)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHcCCCEEEeccccccCC-----ccccHHHHHHHHHHC---CCCEEEeCC--CCHHHHHH
Confidence 00111 24444 4554 4567999999998866542 222334457888887 689887775 57888999
Q ss_pred HHhcC-CeEeecchHH
Q 029540 135 CIERG-VRKFNVNTEV 149 (192)
Q Consensus 135 ~i~~G-i~KINi~T~l 149 (192)
+++.| +-=|-++..+
T Consensus 309 ~i~~G~~D~V~~gR~~ 324 (362)
T PRK10605 309 LIGKGLIDAVAFGRDY 324 (362)
T ss_pred HHHcCCCCEEEECHHh
Confidence 99998 5666666555
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.15 Score=46.28 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=93.9
Q ss_pred ChhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ =++|...+...||++-.++. | ..|-- ++.+.+.....
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~v---Ris~~~~~~~~ 227 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIIL---RFSQWKQQDYT 227 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE---EECcccccccc
Confidence 36889999999999888 16899999999999999974 3 33333 23221110000
Q ss_pred ccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC--------
Q 029540 58 EDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-------- 126 (192)
Q Consensus 58 ~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG-------- 126 (192)
...-.+++++.++ +++.|+|+|-|+.|+.+...- +..+.+..+.+++.+ ++|+...|+-.
T Consensus 228 ---~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~---~~~~~~~~~~~k~~~---~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 228 ---ARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF---EGSELNLAGWTKKLT---GLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred ---cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc---CccchhHHHHHHHHc---CCCEEEECCcccccccccc
Confidence 0011467888888 677899999999987543211 122556667888887 69999999742
Q ss_pred ---------CCHHHHHHHHhcC-CeEeecchHH
Q 029540 127 ---------LSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 127 ---------~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.+.++..++++.| +.-|-++..+
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ 331 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRAL 331 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHH
Confidence 4778999999987 6666666554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.061 Score=44.77 Aligned_cols=132 Identities=11% Similarity=0.101 Sum_probs=86.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+.|.+..+.++-.+. .+++++.... .-+++..--|.+.- .. .. +....+|.+..+.+++-|+|
T Consensus 91 ~~~~~Ga~~vilg~~~l~~~~~---l~ei~~~~~~~i~vsid~k~~~v~~-~g----~~-~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 91 ALLDAGVSRVIIGTAAVKNPEL---VKEACKKFPGKIVVGLDARDGKVAT-DG----WL-ETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred HHHHcCCCEEEECchHHhCHHH---HHHHHHHhCCCceeeeeccCCEEEE-cc----Ce-ecCCCCHHHHHHHHHhcCCC
Confidence 5678899999999988864443 3444443321 22333322122211 00 00 11246788888888899999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~ 150 (192)
.+-+-==+.=|.|.+ .|++.++++.+.+ ++|++.-||-+.+++ ++++.+.| +..+=+++.+.
T Consensus 162 ~ii~~~~~~~g~~~G----~d~~~i~~l~~~~---~ipvia~GGi~~~~d-i~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 162 AIIYTDISRDGTLSG----PNVEATRELAAAV---PIPVIASGGVSSLDD-IKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred EEEEeeecCcCCcCC----CCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHcCCccEEEEEHHHH
Confidence 665431112244432 4899999999887 699999999887665 99999988 99999998874
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.11 Score=44.56 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=79.8
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhh
Q 029540 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~ 75 (192)
+|+++|.+-|.+ .++ .+-.+.++..+++.+.||++|+.+=..+.. ++. +.. +.++++ +.+-..
T Consensus 98 ~al~~Ga~~v~~~~~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~~~~-----~Gv---h~~--~~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 98 DAIRMGADAVSIHVNVGS-DTEWEQIRDLGMIAEICDDWGVPLLAMMYP-----RGP---HID--DRDPELVAHAARLGA 166 (258)
T ss_pred HHHHCCCCEEEEEEecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCc---ccc--cccHHHHHHHHHHHH
Confidence 688999765443 344 345688999999999999999777653221 111 000 122333 223344
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-----HHHHHHHHhcCCeEeecchHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-----AELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-----~e~~~~~i~~Gi~KINi~T~l 149 (192)
+.|+|++.++ |+ .+++.|+++.+.. ++|+|.=||-..+ .+.+..+++.|+.-+=+++.+
T Consensus 167 ~~GADyikt~-------~~-----~~~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i 230 (258)
T TIGR01949 167 ELGADIVKTP-------YT-----GDIDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI 230 (258)
T ss_pred HHCCCEEecc-------CC-----CCHHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence 6899999975 33 2677888887766 6999999988753 455667779999955555444
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=40.41 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.+.++||+-|.+.++..++ .+...++++..++. ++.|-..+..... .+++ .+.+.|+
T Consensus 79 ~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~~~~~----------------~~~~--~~~~~g~ 137 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLSPTGE----------------LAAA--AAEEAGV 137 (200)
T ss_pred HHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEECCCCc----------------cchh--hHHHcCC
Confidence 5788999999999999764 34444555544443 6777777644311 0111 1567799
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH-HHHHHHHhcCCeEeecch
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA-ELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~-e~~~~~i~~Gi~KINi~T 147 (192)
|.+.+.-++..+.+....+ -....++.++... ++|++.=| |+.. +++.++++.|..=|-+++
T Consensus 138 d~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~pi~~~G--Gi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 138 DEVGLGNGGGGGGGRDAVP-IADLLLILAKRGS---KVPVIAGG--GINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CEEEEcCCcCCCCCccCch-hHHHHHHHHHhcC---CCCEEEEC--CCCCHHHHHHHHHhCCCEEEecC
Confidence 9998876655444332111 1124455555544 69999866 5555 889999999987776653
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=43.52 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=80.5
Q ss_pred hhhcCCCEeEeeCC--CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 3 AIVLGFDSLMVDGS--HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 3 ai~~GFtSVM~D~S--~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+-++|.+.|.+.-| .+|++| ..+.++.|+.+|+.+=.+.|. ++++++ +.+.+.|
T Consensus 81 l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~-------------------~~~~~~-~~~~~~~ 136 (223)
T PRK04302 81 VKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNN-------------------PETSAA-AAALGPD 136 (223)
T ss_pred HHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCC-------------------HHHHHH-HhcCCCC
Confidence 45789999999998 688887 578899999988765554332 345555 4566889
Q ss_pred EEEE----ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAV----CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAv----aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++++ ++||-=+.... .|..-.+.++.|++... ++|++. ||+=.+.++.+++.+.|+.=+=++|.+.
T Consensus 137 ~I~~~p~~~igt~~~~~~~-~~~~i~~~~~~ir~~~~--~~pvi~-GggI~~~e~~~~~~~~gadGvlVGsa~l 206 (223)
T PRK04302 137 YVAVEPPELIGTGIPVSKA-KPEVVEDAVEAVKKVNP--DVKVLC-GAGISTGEDVKAALELGADGVLLASGVV 206 (223)
T ss_pred EEEEeCccccccCCCCCcC-CHHHHHHHHHHHHhccC--CCEEEE-ECCCCCHHHHHHHHcCCCCEEEEehHHh
Confidence 8885 35542222211 23333333444555332 588876 5544478889999999999898999885
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=45.03 Aligned_cols=125 Identities=19% Similarity=0.231 Sum_probs=86.4
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+-.|. .+.+++++..++.+++|+..|..|.. +.. ...| ...++|+.+.
T Consensus 86 ~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~--~~~-~~~d--------~~~~~~~~~~ 154 (273)
T cd07941 86 ALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF--DAE-HFFD--------GYKANPEYAL 154 (273)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE--eEE-eccc--------cCCCCHHHHH
Confidence 4788999999985443 45689999999999999999986643 211 1111 1357888888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
++++ +-|+|.+.++ -.=|.- .|.-=.++++.+++... ++||-+|+ .-|+.-...-.|++.|+.-|.
T Consensus 155 ~~~~~~~~~g~~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~l~~H~Hnd~Gla~An~laA~~aGa~~id 225 (273)
T cd07941 155 ATLKAAAEAGADWLVLC--DTNGGT---LPHEIAEIVKEVRERLP--GVPLGIHAHNDSGLAVANSLAAVEAGATQVQ 225 (273)
T ss_pred HHHHHHHhCCCCEEEEe--cCCCCC---CHHHHHHHHHHHHHhCC--CCeeEEEecCCCCcHHHHHHHHHHcCCCEEE
Confidence 8874 4688876543 222222 24444566777777663 37777776 457778888999999998875
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.15 Score=46.42 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=84.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..++++|++.+ +.|+|.+-|| -||.-.-....-.++.|.+|++.+ ++|+.+-||--.+.| +-||+.+|-.-+
T Consensus 244 V~~~eda~~a~-~~G~d~I~VS---nhGGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~g~D-v~KALaLGA~aV 315 (361)
T cd04736 244 IVTAEDAKRCI-ELGADGVILS---NHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRRGSD-IVKALALGANAV 315 (361)
T ss_pred CCCHHHHHHHH-HCCcCEEEEC---CCCcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCCHHH-HHHHHHcCCCEE
Confidence 47899999976 5799999987 376422111112488999998887 699999999877665 889999999999
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
=+++.+.++.... -..-...+.+.+++.++..|.++|+..
T Consensus 316 ~iGr~~l~~la~~-------G~~gv~~~l~~l~~el~~~m~l~G~~~ 355 (361)
T cd04736 316 LLGRATLYGLAAR-------GEAGVSEVLRLLKEEIDRTLALIGCPD 355 (361)
T ss_pred EECHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999877432 122345567788888889999998753
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.26 Score=42.59 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=84.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|.+-|-++++.++. ...++++++||.+|..+=+|+- +.+|+++ +.+.|+|.
T Consensus 128 ~a~~~GAD~VlLi~~~l~~----~~l~~li~~a~~lGl~~lvevh-------------------~~~E~~~-A~~~gadi 183 (260)
T PRK00278 128 EARAAGADAILLIVAALDD----EQLKELLDYAHSLGLDVLVEVH-------------------DEEELER-ALKLGAPL 183 (260)
T ss_pred HHHHcCCCEEEEEeccCCH----HHHHHHHHHHHHcCCeEEEEeC-------------------CHHHHHH-HHHcCCCE
Confidence 5788999999999999875 4678999999999988777743 3345544 44679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+. +.-.. .-..|++++.++...+.. .+|++-=|| ..+.++++++.++|+.=|=++|.+.
T Consensus 184 Igin-----~rdl~-~~~~d~~~~~~l~~~~p~-~~~vIaegG-I~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 184 IGIN-----NRNLK-TFEVDLETTERLAPLIPS-DRLVVSESG-IFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred EEEC-----CCCcc-cccCCHHHHHHHHHhCCC-CCEEEEEeC-CCCHHHHHHHHHcCCCEEEECHHHc
Confidence 8863 21111 245678888888776531 246555332 3368999999999999999999885
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.52 Score=38.09 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=94.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCcc--------cccc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTV--------EDYE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~--------~~~~ 61 (192)
++++.|.+.|-+---.++-.+-.+..+++..+|+++|+.+=- ++|. ++...-.... ....
T Consensus 21 ~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~~~la~~~g~~GvHl~~~~~~~~~~r~~~~~~~~ig 100 (196)
T TIGR00693 21 AALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDRVDLALALGADGVHLGQDDLPASEARALLGPDKIIG 100 (196)
T ss_pred HHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCEEE
Confidence 578899999999887788888888889999999888765543 2332 2211000000 0001
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCC-CCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHG-KYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG-~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
....+++++.+ ..+.|+|.+.+ |++.- .-+++ .|.+.+++|+++.+... ++|++.=| |+..++++++.+.|
T Consensus 101 ~s~h~~~e~~~-a~~~g~dyi~~--~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~G--GI~~~~~~~~~~~G 173 (196)
T TIGR00693 101 VSTHNLEELAE-AEAEGADYIGF--GPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIG--GITLENAAEVLAAG 173 (196)
T ss_pred EeCCCHHHHHH-HhHcCCCEEEE--CCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEEC--CcCHHHHHHHHHcC
Confidence 12356788877 66789999764 55421 11111 15578999999987652 48988888 56789999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|=+.+.+.
T Consensus 174 ~~gva~~~~i~ 184 (196)
T TIGR00693 174 ADGVAVVSAIM 184 (196)
T ss_pred CCEEEEhHHhh
Confidence 99888888774
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.087 Score=44.11 Aligned_cols=136 Identities=11% Similarity=0.113 Sum_probs=81.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC--eEEEeccccccCCCCCccccc-cccCCCHHHHHHHhhhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM--LVEAELGRLSGTEDGLTVEDY-EAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv--~VEaElG~i~g~e~~~~~~~~-~~~~T~peea~~Fv~~Tg 78 (192)
+++++|++-|++..+.+.-. ...+++++.....-+ ++..=.|.++ .+..+....+ ...-.+|.+..+.+++-|
T Consensus 91 ~~~~~G~~~vilg~~~l~~~---~~~~~~~~~~~~~~i~vsld~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~G 166 (232)
T TIGR03572 91 KLLSLGADKVSINTAALENP---DLIEEAARRFGSQCVVVSIDVKKELDG-SDYKVYSDNGRRATGRDPVEWAREAEQLG 166 (232)
T ss_pred HHHHcCCCEEEEChhHhcCH---HHHHHHHHHcCCceEEEEEEeccCCCC-CcEEEEECCCcccCCCCHHHHHHHHHHcC
Confidence 45678999999987766433 334444433211112 3333222110 0000000000 112245666666677889
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH-HHhcCCeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG-CIERGVRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~-~i~~Gi~KINi~T~l 149 (192)
+|.+-+.-=+.-|.+ +..|++.+++|.+.+ ++|++.=||-.. .+++.+ +.+.|+..|-++|.+
T Consensus 167 ~d~i~i~~i~~~g~~----~g~~~~~~~~i~~~~---~ipvia~GGi~s-~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 167 AGEILLNSIDRDGTM----KGYDLELIKTVSDAV---SIPVIALGGAGS-LDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCEEEEeCCCccCCc----CCCCHHHHHHHHhhC---CCCEEEECCCCC-HHHHHHHHHHcCCCEEEEehhh
Confidence 999987631122222 345899999999887 699999999874 455777 778999999999986
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.2 Score=42.64 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=84.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+.+++|.+-|-+..+.+ +|....+++.+.-.. .=+++-.-=|.+-.. .+ .+..-.+|.+..+.+++-|+.
T Consensus 93 ~~l~~Ga~kvvigt~a~---~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~-----gw-~~~~~~~~~~~~~~~~~~g~~ 163 (234)
T PRK13587 93 DYFAAGINYCIVGTKGI---QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVN-----GW-EEDTELNLFSFVRQLSDIPLG 163 (234)
T ss_pred HHHHCCCCEEEECchHh---cCHHHHHHHHHHcCCCEEEEEEeeCCEEEec-----CC-cccCCCCHHHHHHHHHHcCCC
Confidence 56788999998866554 344444444433211 113333322332100 01 122346788888888888876
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
-+-+.==+.-|...+ .|+++++++.+.+ ++|+...||-+.++ +++++.+.|+.-+-++|.+..
T Consensus 164 ~ii~tdi~~dGt~~G----~~~~li~~l~~~~---~ipvi~~GGi~s~e-di~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 164 GIIYTDIAKDGKMSG----PNFELTGQLVKAT---TIPVIASGGIRHQQ-DIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred EEEEecccCcCCCCc----cCHHHHHHHHHhC---CCCEEEeCCCCCHH-HHHHHHHcCCCEEEEhHHHHh
Confidence 444432233444432 4888999998877 69999999999665 588888999999999999864
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.68 Score=40.19 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=87.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+++++|.+.|-+=.+..+ +...++.+++|+..|..|..=+... +. ..++|+...++++ +.|
T Consensus 99 ~~~~~g~~~iri~~~~~~----~~~~~~~i~~ak~~G~~v~~~i~~~----~~--------~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 99 KAAKNGIDIFRIFDALND----VRNLEVAIKAVKKAGKHVEGAICYT----GS--------PVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred HHHHcCCCEEEEeecCCh----HHHHHHHHHHHHHCCCeEEEEEEec----CC--------CCCCHHHHHHHHHHHHHcC
Confidence 456778877766322222 6788899999999998777533221 11 2467877777754 468
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee------------
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN------------ 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN------------ 144 (192)
+|.+-++ -.=|.. .|.-=.++++.+++.. ++||-+|+ ..|+.-.....|++.|+.-|.
T Consensus 163 a~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~---~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN 234 (275)
T cd07937 163 ADSICIK--DMAGLL---TPYAAYELVKALKKEV---GLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQ 234 (275)
T ss_pred CCEEEEc--CCCCCC---CHHHHHHHHHHHHHhC---CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCC
Confidence 9986654 332322 1333345556666665 58888888 678888999999999988774
Q ss_pred cchHHHHHHHHHh
Q 029540 145 VNTEVRKAYMDSL 157 (192)
Q Consensus 145 i~T~l~~a~~~~~ 157 (192)
..|+...++.+..
T Consensus 235 ~~~E~l~~~L~~~ 247 (275)
T cd07937 235 PSTESMVAALRGT 247 (275)
T ss_pred hhHHHHHHHHHcc
Confidence 5666666666554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.12 Score=42.87 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+++++++.. +.|+|.+.+--... |.+........++.++++++.+ ++|+++.||-.. .++++++++.|..=|-
T Consensus 110 ~~~~~~~~~~-~~gad~i~~~~~~~-~G~~~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~-~~~v~~~l~~GadgV~ 183 (236)
T cd04730 110 TSVEEARKAE-AAGADALVAQGAEA-GGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIAD-GRGIAAALALGADGVQ 183 (236)
T ss_pred CCHHHHHHHH-HcCCCEEEEeCcCC-CCCCCccccCHHHHHHHHHHHh---CCCEEEECCCCC-HHHHHHHHHcCCcEEE
Confidence 3567887755 47899987522111 2222111124578889888877 699999996433 3789999999999999
Q ss_pred cchHHHHHH
Q 029540 145 VNTEVRKAY 153 (192)
Q Consensus 145 i~T~l~~a~ 153 (192)
++|.+....
T Consensus 184 vgS~l~~~~ 192 (236)
T cd04730 184 MGTRFLATE 192 (236)
T ss_pred EchhhhcCc
Confidence 999885443
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.13 Score=47.70 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=82.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
..+++|++-|++|.++-.= + ...+.++..++. ++.|=+ | .-.++++|+..+ +.|+
T Consensus 231 ~L~~aG~d~I~vd~a~g~~-~---~~~~~i~~i~~~~~~~~vi~--G----------------~v~t~~~a~~l~-~aGa 287 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGHS-I---YVIDSIKEIKKTYPDLDIIA--G----------------NVATAEQAKALI-DAGA 287 (450)
T ss_pred HHHHhCCCEEEEECCCCcH-h---HHHHHHHHHHHhCCCCCEEE--E----------------eCCCHHHHHHHH-HhCC
Confidence 4578999999999988421 2 233333333332 233222 1 247788888866 6799
Q ss_pred cEEEEecCcCCCCCCC---CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNVHGKYPS---SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~---~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++-|++|.--=.+.. +...-.+..+.++.+..+..++|+.-=||--.|.| +.+|+.+|..=+=++|.|.
T Consensus 288 d~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~d-i~kAla~GA~~V~~G~~~a 360 (450)
T TIGR01302 288 DGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGD-IVKALAAGADAVMLGSLLA 360 (450)
T ss_pred CEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHH-HHHHHHcCCCEEEECchhh
Confidence 9999876431101110 11112567777777766555899999999888766 9999999999999999883
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.15 Score=45.11 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
-+++++|++ +++.|+|.|.+ -|.--|.|.+ ..-++++|+++.+.+ ++|++.-||-+.+.+ ++++..+|..=|
T Consensus 116 v~s~~~a~~-a~~~GaD~Ivv-~g~eagGh~g--~~~~~~ll~~v~~~~---~iPviaaGGI~~~~~-~~~al~~GA~gV 187 (307)
T TIGR03151 116 VASVALAKR-MEKAGADAVIA-EGMESGGHIG--ELTTMALVPQVVDAV---SIPVIAAGGIADGRG-MAAAFALGAEAV 187 (307)
T ss_pred cCCHHHHHH-HHHcCCCEEEE-ECcccCCCCC--CCcHHHHHHHHHHHh---CCCEEEECCCCCHHH-HHHHHHcCCCEe
Confidence 367788877 44679999987 3444445543 223799999999888 699999998887654 999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
-++|.+.
T Consensus 188 ~iGt~f~ 194 (307)
T TIGR03151 188 QMGTRFL 194 (307)
T ss_pred ecchHHh
Confidence 9999774
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.23 Score=45.64 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=84.4
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..++++|+..+ +.|||.+-|| -||.-......--++.|.+|++.+.. .+|+++-||-..+.| +.||+.+|..=+
T Consensus 261 V~~~~dA~~a~-~~G~d~I~vs---nhGGr~~d~~~~t~~~L~ei~~~~~~-~~~vi~dGGIr~G~D-v~KALaLGA~~v 334 (383)
T cd03332 261 ILHPDDARRAV-EAGVDGVVVS---NHGGRQVDGSIAALDALPEIVEAVGD-RLTVLFDSGVRTGAD-IMKALALGAKAV 334 (383)
T ss_pred CCCHHHHHHHH-HCCCCEEEEc---CCCCcCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCcCcHHH-HHHHHHcCCCEE
Confidence 46888888866 6899999888 36543211111247789999888742 499999999887765 899999999999
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
-+++.+.++.... -..-.....+.+++.++..|.++|+..
T Consensus 335 ~iGr~~l~~l~~~-------G~~gv~~~l~~l~~El~~~m~l~G~~~ 374 (383)
T cd03332 335 LIGRPYAYGLALG-------GEDGVEHVLRNLLAELDLTMGLAGIRS 374 (383)
T ss_pred EEcHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999877431 123345567788888889999999753
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.11 Score=46.51 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=88.2
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|-+-+.+- ++|.=.+...||++-.++. |. +- +| ++...+ ....
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~--d~-v~vRis~~~-~~~~- 233 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGA--DR-VGIRLSPFG-TFND- 233 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCC--Cc-eEEEECccc-cCCC-
Confidence 368899999999998771 4677788889998888863 32 11 22 222211 1100
Q ss_pred cccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 59 DYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 59 ~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
...--++++..+|+ ++.|+|+|.|+-|..+... +..+.+..++|++.+ ++|+..=|+-- .++..++
T Consensus 234 --~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~---~ipvi~~G~i~--~~~a~~~ 302 (338)
T cd02933 234 --MGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAF---KGPLIAAGGYD--AESAEAA 302 (338)
T ss_pred --CCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHc---CCCEEEECCCC--HHHHHHH
Confidence 00012466666664 5569999999888655432 445778889999988 69999888764 7889999
Q ss_pred HhcC-CeEeecchHH
Q 029540 136 IERG-VRKFNVNTEV 149 (192)
Q Consensus 136 i~~G-i~KINi~T~l 149 (192)
++.| +-=|=++..+
T Consensus 303 l~~g~~D~V~~gR~~ 317 (338)
T cd02933 303 LADGKADLVAFGRPF 317 (338)
T ss_pred HHcCCCCEEEeCHhh
Confidence 9987 5555555443
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.067 Score=44.59 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=62.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+++++.|+|.|-|. +..+...+ ...|++.+++|.+.+ ++|+-+ ||-=.+.++++++...|+.+|-
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~--dl~~~~~g--~~~~~~~i~~i~~~~---~~pi~~-ggGI~~~ed~~~~~~~Ga~~vv 99 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVV--DLDGAKEG--GPVNLPVIKKIVRET---GVPVQV-GGGIRSLEDVEKLLDLGVDRVI 99 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eCCccccC--CCCcHHHHHHHHHhc---CCCEEE-eCCcCCHHHHHHHHHcCCCEEE
Confidence 589998888899999999885 55554332 446899999999887 699999 4423456889999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 100 lgs~~l~ 106 (230)
T TIGR00007 100 IGTAAVE 106 (230)
T ss_pred EChHHhh
Confidence 9987743
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.26 Score=48.59 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=83.4
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-|-+.| + ++|..++...||++..++. +..|-.=|......+.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~---- 633 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG---- 633 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC----
Confidence 36889999999987763 1 5899999999999999973 2334333332211111
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029540 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
--+++++.+|+ ++.|+|+|-|+.|..+.... .-.+....+..++|++.+ ++|+..-|+-- +.++..
T Consensus 634 ------g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pv~~~G~i~-~~~~a~ 703 (765)
T PRK08255 634 ------GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA---GIATIAVGAIS-EADHVN 703 (765)
T ss_pred ------CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc---CCEEEEeCCCC-CHHHHH
Confidence 13566666664 56799999999886542211 101233455567888887 69988888764 556789
Q ss_pred HHHhcCC
Q 029540 134 GCIERGV 140 (192)
Q Consensus 134 ~~i~~Gi 140 (192)
++++.|.
T Consensus 704 ~~l~~g~ 710 (765)
T PRK08255 704 SIIAAGR 710 (765)
T ss_pred HHHHcCC
Confidence 9998773
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.13 Score=46.40 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=89.1
Q ss_pred hhhhcCCCEeEeeCC----------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGS----------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.| ..+.+|++....+.+++|++.|..|+.- .+| ...++|+...
T Consensus 79 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~------~ed--------a~r~~~~~l~ 144 (363)
T TIGR02090 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS------AED--------ATRTDIDFLI 144 (363)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE------Eee--------cCCCCHHHHH
Confidence 578889887776333 2267899999999999999999877522 122 1357888888
Q ss_pred HHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe---
Q 029540 72 EFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF--- 143 (192)
Q Consensus 72 ~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI--- 143 (192)
+++++ .|+|.+.++ ..=|.- .|.-=.++++.|++.. ++||-+|+ ..|+.......|+..|+.-|
T Consensus 145 ~~~~~~~~~g~~~i~l~--DT~G~~---~P~~v~~li~~l~~~~---~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s 216 (363)
T TIGR02090 145 KVFKRAEEAGADRINIA--DTVGVL---TPQKMEELIKKLKENV---KLPISVHCHNDFGLATANSIAGVKAGAEQVHVT 216 (363)
T ss_pred HHHHHHHhCCCCEEEEe--CCCCcc---CHHHHHHHHHHHhccc---CceEEEEecCCCChHHHHHHHHHHCCCCEEEEE
Confidence 87654 689976654 222322 2433345556666555 57777766 56777788888999998776
Q ss_pred ---------ecchHHHHHHHHH
Q 029540 144 ---------NVNTEVRKAYMDS 156 (192)
Q Consensus 144 ---------Ni~T~l~~a~~~~ 156 (192)
|..|+....++..
T Consensus 217 ~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 217 VNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred eeccccccccccHHHHHHHHHH
Confidence 4556655555544
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=46.52 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=85.1
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|.- ..+|+++..++.+++|+..|..|+- +.+| ...++|+...
T Consensus 80 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~------~~ed--------~~r~~~~~l~ 145 (365)
T TIGR02660 80 AAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV------GGED--------ASRADPDFLV 145 (365)
T ss_pred HHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE------eecC--------CCCCCHHHHH
Confidence 57888988877665543 4688999999999999999987662 1233 2357898888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
++++ +.|+|.+-++ ..-|.- .|.-=.++++.+++.+ ++||-+|+ ..|+.-...-.|++.|+..|.
T Consensus 146 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~---~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd 215 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFA--DTVGIL---DPFSTYELVRALRQAV---DLPLEMHAHNDLGMATANTLAAVRAGATHVN 215 (365)
T ss_pred HHHHHHHHcCcCEEEEc--ccCCCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 8865 4789876543 343432 2433345566676665 58888776 467778888889999998875
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.29 Score=43.54 Aligned_cols=130 Identities=9% Similarity=0.094 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCCC-----------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCH
Q 029540 2 EAIVLGFDSLMVDGSHL-----------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l-----------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
++.++||+-|=+-...- .+..+.+.+.++++-.++. +++|-.=+.- |.++. .+.
T Consensus 83 ~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--g~~~~----------~~~ 150 (312)
T PRK10550 83 RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--GWDSG----------ERK 150 (312)
T ss_pred HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--CCCCc----------hHH
Confidence 34556776666554442 3667778888887777652 2444443321 11110 011
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEeecc
Q 029540 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKFNVN 146 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KINi~ 146 (192)
.+..+-+++.|+|+|.|.-+|....|.+ |.+|++.+++|++.+ ++|++.=|+--.+ ++..+++ ..|+.=|=|+
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g--~~~~~~~i~~ik~~~---~iPVi~nGdI~t~-~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRA--EHINWQAIGEIRQRL---TIPVIANGEIWDW-QSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCC--CcccHHHHHHHHhhc---CCcEEEeCCcCCH-HHHHHHHhccCCCEEEEc
Confidence 2444447789999999998888888874 667999999999988 6999999976555 5677766 5778888888
Q ss_pred hHH
Q 029540 147 TEV 149 (192)
Q Consensus 147 T~l 149 (192)
..+
T Consensus 225 Rg~ 227 (312)
T PRK10550 225 RGA 227 (312)
T ss_pred HHh
Confidence 765
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.26 Score=44.17 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=80.3
Q ss_pred ChhhhcCCCEeEeeCCC--------C------------CHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCcccc
Q 029540 1 MEAIVLGFDSLMVDGSH--------L------------PFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------l------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~ 59 (192)
++|.++||+-|-+-+.| - ++|.-.+...|+++-.++. +..|-. ++.. +|...
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~v---Ris~-~d~~~--- 221 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFV---RISA-SDYHP--- 221 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEE---Eecc-cccCC---
Confidence 36889999999998764 1 5788899999999888864 111111 2211 11111
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.- -+++++.++ +++.|+|+|-|+.|+..-.-....+..+++..++|++.+ ++|+..=|+- .+.++..+++
T Consensus 222 --~G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~G~i-~~~~~a~~~l 294 (337)
T PRK13523 222 --GG-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAVGLI-TSGAQAEEIL 294 (337)
T ss_pred --CC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEeCCC-CCHHHHHHHH
Confidence 01 236666655 456899999999997320000001334678889999887 6997766654 3467788998
Q ss_pred hcCC
Q 029540 137 ERGV 140 (192)
Q Consensus 137 ~~Gi 140 (192)
+.|.
T Consensus 295 ~~g~ 298 (337)
T PRK13523 295 QNNR 298 (337)
T ss_pred HcCC
Confidence 8874
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=48.57 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=79.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~Tg 78 (192)
+|+++|.+.|-+=-|.-+ +++.++.+++|+..|..|++-+....+. ..+++...++ +.+.|
T Consensus 103 ~A~~~Gvd~irif~~lnd----~~n~~~~i~~ak~~G~~v~~~i~~t~~p------------~~t~e~~~~~a~~l~~~G 166 (467)
T PRK14041 103 KVAEYGLDIIRIFDALND----IRNLEKSIEVAKKHGAHVQGAISYTVSP------------VHTLEYYLEFARELVDMG 166 (467)
T ss_pred HHHHCCcCEEEEEEeCCH----HHHHHHHHHHHHHCCCEEEEEEEeccCC------------CCCHHHHHHHHHHHHHcC
Confidence 578889987764433333 3445666799999999888666443221 1234444444 34579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.. .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 167 ad~I~i~--Dt~G~l---~P~~v~~Lv~~lk~~~---~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~ 227 (467)
T PRK14041 167 VDSICIK--DMAGLL---TPKRAYELVKALKKKF---GVPVEVHSHCTTGLASLAYLAAVEAGADMFDT 227 (467)
T ss_pred CCEEEEC--CccCCc---CHHHHHHHHHHHHHhc---CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9987764 333332 2444456777788776 57777665 6899999999999999988754
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.83 Score=37.43 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=90.3
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeE------EEecc----ccccCCCCC--------cccccccc
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLV------EAELG----RLSGTEDGL--------TVEDYEAK 63 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~V------EaElG----~i~g~e~~~--------~~~~~~~~ 63 (192)
+++.|-+.|=+---+++.++-.+..+++.+.++.. -+.| -.++| |++. .+.. ...-....
T Consensus 23 ~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~~-~~~~~~~~r~~~~~~~ig~s 101 (201)
T PRK07695 23 QIHSEVDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLGY-RSFSVRSVREKFPYLHVGYS 101 (201)
T ss_pred HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeCc-ccCCHHHHHHhCCCCEEEEe
Confidence 57788888888888889888888888887765531 0111 11111 2221 1110 00000112
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..+++++.+ ..+.|+|.+. +|.++..-. ++.+.++++.++++.+.+ ++|++.=||- ..+++..+++.|+.=
T Consensus 102 ~~s~e~a~~-a~~~Gadyi~--~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI--~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 102 VHSLEEAIQ-AEKNGADYVV--YGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI--TPENTRDVLAAGVSG 173 (201)
T ss_pred CCCHHHHHH-HHHcCCCEEE--ECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC--CHHHHHHHHHcCCCE
Confidence 357888877 5577999985 454432211 112446889999998877 6999988855 788899999999999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
|-+.+.+.
T Consensus 174 vav~s~i~ 181 (201)
T PRK07695 174 IAVMSGIF 181 (201)
T ss_pred EEEEHHHh
Confidence 99999985
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.16 Score=44.56 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=95.7
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH----
Q 029540 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---- 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---- 67 (192)
+|+++|++.|.+=.|.- +.+|.+++.++++++|+..|..|+.=+ ||.. -+++
T Consensus 82 ~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~------ed~~--------r~d~~~~v 147 (279)
T cd07947 82 LVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL------EDIT--------RADIYGFV 147 (279)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE------Eccc--------CCCcccch
Confidence 68899999998876654 468889999999999999998887554 3321 1333
Q ss_pred -HHHHHHhh---hhCCcE---EEEecCcCC----CCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHH
Q 029540 68 -NQAEEFID---ETDIDA---LAVCIGNVH----GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKG 134 (192)
Q Consensus 68 -eea~~Fv~---~TgvD~---LAvaiGt~H----G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~ 134 (192)
+-++++++ +.|+|+ |+=.+|..+ +.| |.-=.++++.+++.++..++||-+| =..|+.-...-.
T Consensus 148 ~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~----p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~la 223 (279)
T cd07947 148 LPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASL----PRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVA 223 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccc----hHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHH
Confidence 24555554 379993 455566553 011 1111356667776642112345555 567888889999
Q ss_pred HHhcCCeEe------------ecchHHHHHHHHHh-c-CCCCChHHHH
Q 029540 135 CIERGVRKF------------NVNTEVRKAYMDSL-S-RPKSDLIHLM 168 (192)
Q Consensus 135 ~i~~Gi~KI------------Ni~T~l~~a~~~~~-~-~~~~~~~~~~ 168 (192)
|++.|+..| |..|+....+...+ . +++.|+..+.
T Consensus 224 A~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~~t~idl~~l~ 271 (279)
T cd07947 224 AWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQLKGNFDGMNLEVIT 271 (279)
T ss_pred HHHhCCCEEEEecccccccccchhHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 999999887 56677776666655 2 2334555443
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.12 Score=47.15 Aligned_cols=130 Identities=13% Similarity=0.198 Sum_probs=79.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHH--HHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKD--NISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~ee--Ni~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|-+-|.+++..-+-.- +-.....++++.++.++.| |.| ...+++.|++.++ +|+
T Consensus 149 ~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipV------IaG------------~V~t~e~A~~l~~-aGA 209 (368)
T PRK08649 149 TVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPV------IVG------------GCVTYTTALHLMR-TGA 209 (368)
T ss_pred HHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCE------EEe------------CCCCHHHHHHHHH-cCC
Confidence 356788888888874321110 0001122455556667776 221 1367889999885 999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhc-------c---CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSS-------K---KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~-------~---~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|.+-+++|--.+.-....-...+..+..|.+..+ + .++|++--||-..+.+ +.+|+.+|-.=+.++|.|
T Consensus 210 D~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~d-iakAlalGAd~Vm~Gs~f 288 (368)
T PRK08649 210 AGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGD-IAKAIACGADAVMLGSPL 288 (368)
T ss_pred CEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHH-HHHHHHcCCCeecccchh
Confidence 9998877642111110001122334444444321 1 1599999999887755 999999999999999998
Q ss_pred HH
Q 029540 150 RK 151 (192)
Q Consensus 150 ~~ 151 (192)
..
T Consensus 289 a~ 290 (368)
T PRK08649 289 AR 290 (368)
T ss_pred cc
Confidence 54
|
|
| >PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.026 Score=52.26 Aligned_cols=152 Identities=19% Similarity=0.173 Sum_probs=77.1
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhCCCeEE-EeccccccCCC----CCccccccccCCCHH
Q 029540 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSKGMLVE-AELGRLSGTED----GLTVEDYEAKLTDVN 68 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~gv~VE-aElG~i~g~e~----~~~~~~~~~~~T~pe 68 (192)
..+++||+=+++|.|.- |.+.=.++|.++.++|-+.--.-. ..+..|=|.|- |......+-..|+|+
T Consensus 115 ayv~AGF~KIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~pvYvIGTEVPvPGGa~e~~~~l~vTs~e 194 (424)
T PF08013_consen 115 AYVEAGFTKIHLDCSMDCAGDPKPLPDETVAERAARLCEVAEEAAKRRGGPPPVYVIGTEVPVPGGAQEALDGLAVTSPE 194 (424)
T ss_dssp HHHCTT--EEEE---C--CTS-SC--HHHHHHHHHHHHHHHHCCS-HHHHHH-EEEEE-SS-----------------HH
T ss_pred HHHHcCCceEeecCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCccCCCCcccccccCCCCCCHH
Confidence 36789999999999964 566677888888888886510000 02333323332 111111123479999
Q ss_pred HHHHHhhh-------hCCc-------EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc-EEeecCCC--CCHHH
Q 029540 69 QAEEFIDE-------TDID-------ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL-LVLHGASG--LSAEL 131 (192)
Q Consensus 69 ea~~Fv~~-------TgvD-------~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP-LVlHGgSG--~~~e~ 131 (192)
.+++|++. -|.+ .|-|--|+--|-- +.-..|++.-+++.+.++ +-| ||+-+=|+ .++..
T Consensus 195 a~~~Ti~~h~~aF~~~GL~~aw~rvi~~VVQpGVEf~~~--~V~~Y~~~~A~~Ls~~i~--~~p~lvfEaHSTDYQt~~a 270 (424)
T PF08013_consen 195 AAEATIETHRKAFEAAGLEDAWPRVIALVVQPGVEFDHE--NVIDYDPEKARDLSAMIK--KYPGLVFEAHSTDYQTPQA 270 (424)
T ss_dssp HHHHHHHHHHHHHHCCT-HHHHTTEEEEE---S-EEETT--EEE---CCCCCHHHHHHC--TSTT-EEEES--TT--HHH
T ss_pred HHHHHHHHHHHHHHHcCcHHhHhheEEEEecCCceeCCC--ceeecCHHHHHHHHHHHH--hCCceEEeecccCcCCHHH
Confidence 99999864 3442 3555555532210 001222333456666665 577 88766555 68888
Q ss_pred HHHHHhcCCeEeecchHHHHHHHHHh
Q 029540 132 IKGCIERGVRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 132 ~~~~i~~Gi~KINi~T~l~~a~~~~~ 157 (192)
+++.++.|+.-.||+-.|-.|+++++
T Consensus 271 l~~lV~dgfaiLKVGPaLTfalREAl 296 (424)
T PF08013_consen 271 LRELVEDGFAILKVGPALTFALREAL 296 (424)
T ss_dssp HHHHHHTTEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHhcCceeeeccchhhHHHHHHH
Confidence 99999999999999999988888776
|
The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.14 Score=44.01 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=85.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH--hCCCeEEEeccccccCCCCCccccc-cccCCCHHHHHHHhhhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH--SKGMLVEAELGRLSGTEDGLTVEDY-EAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah--~~gv~VEaElG~i~g~e~~~~~~~~-~~~~T~peea~~Fv~~Tg 78 (192)
+.+.+|++-|.+..+.++ |....+++++... +.-++|..=.|..+... .....+ +..-.+|.+..+.+++-|
T Consensus 91 ~l~~~G~~~vvigs~~~~---~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~--v~~~gw~~~~~~~~~e~~~~~~~~g 165 (258)
T PRK01033 91 KIFSLGVEKVSINTAALE---DPDLITEAAERFGSQSVVVSIDVKKNLGGKFD--VYTHNGTKKLKKDPLELAKEYEALG 165 (258)
T ss_pred HHHHCCCCEEEEChHHhc---CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEE--EEEcCCeecCCCCHHHHHHHHHHcC
Confidence 356789998888655443 3334444444332 12244544434110000 000000 112356788888888999
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEeecchHHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KINi~T~l~ 150 (192)
++.+-+-==+.=|.|.+ | |++.++++.+.+ ++|+..-||-+.+++ ++++. +.|+..+=+++.+.
T Consensus 166 ~~~ii~~~i~~~G~~~G--~--d~~~i~~~~~~~---~ipvIasGGv~s~eD-~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 166 AGEILLNSIDRDGTMKG--Y--DLELLKSFRNAL---KIPLIALGGAGSLDD-IVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred CCEEEEEccCCCCCcCC--C--CHHHHHHHHhhC---CCCEEEeCCCCCHHH-HHHHHHHCCCCEEEEcceee
Confidence 99877643233466653 4 999999999987 699999999886655 78887 79999999998885
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.36 Score=43.79 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=81.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|+..+ +.|+|.+.|+- ||.-.-......++.|.+|++.+.. ++|+..-||--.+.| +.+++.+|..=|=
T Consensus 230 ~~~~dA~~a~-~~G~d~I~vsn---hGGr~ld~~~~~~~~l~~i~~a~~~-~i~vi~dGGIr~g~D-i~kaLalGA~~V~ 303 (351)
T cd04737 230 QSPEDADVAI-NAGADGIWVSN---HGGRQLDGGPASFDSLPEIAEAVNH-RVPIIFDSGVRRGEH-VFKALASGADAVA 303 (351)
T ss_pred CCHHHHHHHH-HcCCCEEEEeC---CCCccCCCCchHHHHHHHHHHHhCC-CCeEEEECCCCCHHH-HHHHHHcCCCEEE
Confidence 6888887644 78999999882 5532111122457889999888732 499999999877665 8888889999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+.++.... -..-.....+.+++.++..|.++|+.
T Consensus 304 iGr~~l~~la~~-------G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 304 VGRPVLYGLALG-------GAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred ECHHHHHHHhhc-------hHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999998876321 01224455677888888999999864
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.36 Score=39.37 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+.+|-+-|+..++. .++++.++.+|+.+.. | .++|+|+.+-. +-|+|.
T Consensus 71 ~a~~~Ga~~i~~p~~~----------~~~~~~~~~~~~~~i~------g-------------v~t~~e~~~A~-~~Gad~ 120 (190)
T cd00452 71 AAIAAGAQFIVSPGLD----------PEVVKAANRAGIPLLP------G-------------VATPTEIMQAL-ELGADI 120 (190)
T ss_pred HHHHcCCCEEEcCCCC----------HHHHHHHHHcCCcEEC------C-------------cCCHHHHHHHH-HCCCCE
Confidence 4778888888766554 3688888888764432 1 34788888865 679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+ |+. .+ +-.+.++.+++... ++|++-=| |++.+++....+.|+.=|=+++.+.
T Consensus 121 i~~--------~p~-~~-~g~~~~~~l~~~~~--~~p~~a~G--GI~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 121 VKL--------FPA-EA-VGPAYIKALKGPFP--QVRFMPTG--GVSLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred EEE--------cCC-cc-cCHHHHHHHHhhCC--CCeEEEeC--CCCHHHHHHHHHCCCEEEEEchhcc
Confidence 996 443 23 47888888887653 48999999 6688999999999999999988886
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.062 Score=47.88 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=58.8
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH----HHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcCC
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD----LLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~----~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~Gi 140 (192)
+++++.+.++.-+.|++++-++..+..-.+. ..-||+ .|+.|.+.+ ++|+++.+ |+|.+.+..+++.+.|+
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~-~~~df~~~~~~i~~l~~~~---~vPVivK~~g~g~s~~~a~~l~~~Gv 203 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPE-GDRDFRGWLERIEELVKAL---SVPVIVKEVGFGISRETAKRLADAGV 203 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCC-CCcCHHHHHHHHHHHHHhc---CCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 7899999999889999999886544322221 233674 455555554 79999997 78899999999999999
Q ss_pred eEeecch
Q 029540 141 RKFNVNT 147 (192)
Q Consensus 141 ~KINi~T 147 (192)
.=|.++.
T Consensus 204 d~I~vsG 210 (326)
T cd02811 204 KAIDVAG 210 (326)
T ss_pred CEEEECC
Confidence 8888643
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.27 Score=42.99 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=98.5
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|. ...+|.+...++++++|+..|..|..=+...+ ...-++|+...
T Consensus 82 ~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~-----------~~~r~~~~~~~ 150 (280)
T cd07945 82 WIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWS-----------NGMRDSPDYVF 150 (280)
T ss_pred HHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCC-----------CCCcCCHHHHH
Confidence 4777899998888755 35689999999999999999987765543321 01246788777
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee--
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN-- 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN-- 144 (192)
++++ +.|+|.+.++ -.=|.. .|.-=.++++.+++... ++||-+|+ ..|+.-...-.|++.|+.-|+
T Consensus 151 ~~~~~~~~~G~~~i~l~--DT~G~~---~P~~v~~l~~~l~~~~~--~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s 223 (280)
T cd07945 151 QLVDFLSDLPIKRIMLP--DTLGIL---SPFETYTYISDMVKRYP--NLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTT 223 (280)
T ss_pred HHHHHHHHcCCCEEEec--CCCCCC---CHHHHHHHHHHHHhhCC--CCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 7765 4689976543 333332 24444566677776553 36666554 678888899999999999885
Q ss_pred ----------cchHHHHHHHHH-hc-CCCCChHHHHH
Q 029540 145 ----------VNTEVRKAYMDS-LS-RPKSDLIHLMA 169 (192)
Q Consensus 145 ----------i~T~l~~a~~~~-~~-~~~~~~~~~~~ 169 (192)
..|+-...+... .. +.+.|+..+..
T Consensus 224 ~~GlGe~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~ 260 (280)
T cd07945 224 VNGLGERAGNAPLASVIAVLKDKLKVKTNIDEKRLNR 260 (280)
T ss_pred cccccccccCccHHHHHHHHHHhcCCCcCcCHHHHHH
Confidence 456655555532 22 22345554433
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.56 Score=39.69 Aligned_cols=140 Identities=19% Similarity=0.303 Sum_probs=94.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEE--------Eecc----ccccCCCCCcccc-----c----
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVE--------AELG----RLSGTEDGLTVED-----Y---- 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VE--------aElG----~i~g~e~~~~~~~-----~---- 60 (192)
+|++.|-+.|=|=--..+-++=.+..+++.++|+++|+.+= .++| |+| .+|...... .
T Consensus 29 ~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlG-q~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 29 AALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLG-QDDMPLAEARELLGPGLII 107 (211)
T ss_pred HHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcC-CcccchHHHHHhcCCCCEE
Confidence 57788877766644444444448899999999999987642 1333 343 232211100 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...-.+.+|+++ .++-|+|.++ +|.+-.--+ ++.|.+-++.|+.+++.. .+|+|-=| |+..+.+...++.|
T Consensus 108 G~S~h~~eea~~-A~~~g~DYv~--~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIG--Gi~~~nv~~v~~~G 179 (211)
T COG0352 108 GLSTHDLEEALE-AEELGADYVG--LGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIG--GINLENVPEVLEAG 179 (211)
T ss_pred EeecCCHHHHHH-HHhcCCCEEE--ECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEc--CCCHHHHHHHHHhC
Confidence 001238888888 6677899987 566643322 224678899999999887 59999999 67789999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|=+-+.+.
T Consensus 180 a~gVAvvsai~ 190 (211)
T COG0352 180 ADGVAVVSAIT 190 (211)
T ss_pred CCeEEehhHhh
Confidence 99777665553
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.081 Score=45.01 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=61.6
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.|.||.+..++.+..|+|.|-+.==+ +.. + ...+++.+++|.+.+ .+|+-+=||-.. .|++++.+..|+.|
T Consensus 30 ~~~dp~~~a~~~~~~g~~~l~ivDLd--~~~-g--~~~n~~~i~~i~~~~---~~pv~vgGGirs-~edv~~~l~~Ga~k 100 (241)
T PRK14024 30 SYGSPLDAALAWQRDGAEWIHLVDLD--AAF-G--RGSNRELLAEVVGKL---DVKVELSGGIRD-DESLEAALATGCAR 100 (241)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEecc--ccC-C--CCccHHHHHHHHHHc---CCCEEEcCCCCC-HHHHHHHHHCCCCE
Confidence 46799998888888999888764211 221 1 334789999999888 699999998764 46799999999999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
++++|.+.
T Consensus 101 vviGs~~l 108 (241)
T PRK14024 101 VNIGTAAL 108 (241)
T ss_pred EEECchHh
Confidence 99999874
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.48 Score=42.19 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=76.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCC--------CCC-------CCCCC-----HHHHHHHHhhhccCCccEEeecC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKY--------PSS-------GPNLK-----LDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y--------~~~-------~p~ld-----~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
+++++|+. +++.|||.+-|+ | ||.. ... .+..+ .+.|.++++.+. ++|+..=||
T Consensus 190 ~s~~~a~~-l~~~Gvd~I~vs-G--~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGG 263 (326)
T cd02811 190 ISRETAKR-LADAGVKAIDVA-G--AGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGG 263 (326)
T ss_pred CCHHHHHH-HHHcCCCEEEEC-C--CCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECC
Confidence 56777876 568999999986 3 3441 110 01122 245556665542 599999998
Q ss_pred CCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 125 SGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 125 SG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
-..+ .++.+++.+|..=+=+++.+..+.... .+.+....+.+++.++..|.+.|+.
T Consensus 264 Ir~~-~dv~kal~lGAd~V~i~~~~L~~~~~g--------~~~~~~~i~~~~~el~~~m~~~G~~ 319 (326)
T cd02811 264 IRNG-LDIAKALALGADLVGMAGPFLKAALEG--------EEAVIETIEQIIEELRTAMFLTGAK 319 (326)
T ss_pred CCCH-HHHHHHHHhCCCEEEEcHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7744 669999999999999999998777541 2234456678888888999999875
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.25 Score=46.50 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=86.9
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
++.|-+.|-+|.++-. .+|+. +.++.-++. ++. -|+| .-.++++|+.-+ +.|+|+
T Consensus 236 v~aGvd~i~~D~a~~~-~~~~~---~~i~~ik~~~p~~~------v~ag------------nv~t~~~a~~l~-~aGad~ 292 (479)
T PRK07807 236 LEAGVDVLVVDTAHGH-QEKML---EALRAVRALDPGVP------IVAG------------NVVTAEGTRDLV-EAGADI 292 (479)
T ss_pred HHhCCCEEEEeccCCc-cHHHH---HHHHHHHHHCCCCe------EEee------------ccCCHHHHHHHH-HcCCCE
Confidence 5678999999999988 33333 333333332 222 2222 235677887765 689999
Q ss_pred EEEecCc----CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGN----VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt----~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|.||+ .=..|.+ ...-+|..+.++.+..+..++|++--||-..| .++.+|+.+|..=+-+++-|.
T Consensus 293 v~vgig~gsictt~~~~~-~~~p~~~av~~~~~~~~~~~~~via~ggi~~~-~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 293 VKVGVGPGAMCTTRMMTG-VGRPQFSAVLECAAAARELGAHVWADGGVRHP-RDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred EEECccCCcccccccccC-CchhHHHHHHHHHHHHHhcCCcEEecCCCCCH-HHHHHHHHcCCCeeeccHhhc
Confidence 9999998 5555654 23348888888888665568999999999888 459999999999999998773
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.2 Score=45.74 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=80.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHH--HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDN--ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeN--i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|-+-|.+++..-+-+-+ =..-..+.++.+..+++|=+ | .-.++++|++.++ +|+
T Consensus 150 ~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-----G-------------~V~t~e~A~~~~~-aGa 210 (369)
T TIGR01304 150 IVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-----G-------------GVNDYTTALHLMR-TGA 210 (369)
T ss_pred HHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-----e-------------CCCCHHHHHHHHH-cCC
Confidence 4678999999988643110000 00022456666677777722 1 1366889999886 999
Q ss_pred cEEEEecCcCCCCCCCCCCCC---CHHHHHHHHhhh----ccC---CccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNL---KLDLLKDLHALS----SKK---GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~l---d~~~L~~I~~~~----~~~---~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|.+- +|.--+.+....-.+ ....+.++.+.. ++. .+|+.--||-..+. ++.+|+.+|..=+-++|.+
T Consensus 211 DgV~--~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~-di~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 211 AGVI--VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSG-DLVKAIACGADAVVLGSPL 287 (369)
T ss_pred CEEE--ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHH-HHHHHHHcCCCEeeeHHHH
Confidence 9987 444333332210111 223444443321 111 39999999998875 5999999999999999999
Q ss_pred HHHH
Q 029540 150 RKAY 153 (192)
Q Consensus 150 ~~a~ 153 (192)
..+-
T Consensus 288 a~a~ 291 (369)
T TIGR01304 288 ARAA 291 (369)
T ss_pred Hhhh
Confidence 6554
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.44 Score=40.13 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=81.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEec-----cccccCCCCCccccccccCCCHHHHHHHh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAEL-----GRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaEl-----G~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
+++..|++-||+-.+.+ +|-...+++++..+.-. +++-.=. +.|- .... ..... -++.+-.+.+
T Consensus 88 ~~l~~G~~~v~ig~~~~---~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~-~~~~----~~~~~-~~~~~~~~~l 158 (243)
T cd04731 88 RLLRAGADKVSINSAAV---ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVY-THGG----RKPTG-LDAVEWAKEV 158 (243)
T ss_pred HHHHcCCceEEECchhh---hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEE-EcCC----ceecC-CCHHHHHHHH
Confidence 46778999999975544 45566666666554212 3333221 2221 0000 00111 1223333446
Q ss_pred hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchHHH
Q 029540 75 DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
++-|+|.+.+.-=+..|.. +..+++.++++.+.+ ++|+..-||-..+ +++.++.+. |+.-+=+++.+.
T Consensus 159 ~~~G~d~i~v~~i~~~g~~----~g~~~~~i~~i~~~~---~~pvia~GGi~~~-~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 159 EELGAGEILLTSMDRDGTK----KGYDLELIRAVSSAV---NIPVIASGGAGKP-EHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred HHCCCCEEEEeccCCCCCC----CCCCHHHHHHHHhhC---CCCEEEeCCCCCH-HHHHHHHHhCCCCEEEEeHHHH
Confidence 6789999888643333332 445899999999887 6999999987755 458888886 899999988874
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.17 Score=42.07 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=64.0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|.+..+.+++.|+|.|-|. ...+.|.+ ...+++.+++|.+.+ ++|+..=||-. +.++.+++++.|..+|
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~--dl~~~~~~--~~~~~~~i~~i~~~~---~~pv~~~GgI~-~~e~~~~~~~~Gad~v 99 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVV--DLDGAKGG--EPVNLELIEEIVKAV---GIPVQVGGGIR-SLEDIERLLDLGVSRV 99 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--CCCccccC--CCCCHHHHHHHHHhc---CCCEEEeCCcC-CHHHHHHHHHcCCCEE
Confidence 4689888888888999999998 44444542 456899999999887 69998877744 3577999999999999
Q ss_pred ecchHHHH
Q 029540 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
-++|.+..
T Consensus 100 vigs~~l~ 107 (234)
T cd04732 100 IIGTAAVK 107 (234)
T ss_pred EECchHHh
Confidence 99998743
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.32 Score=42.31 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCC--
Q 029540 15 GSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHG-- 91 (192)
Q Consensus 15 ~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG-- 91 (192)
+....+..|.+...++++..++. +++|=.=+.. ..++..+..+.+++.|+|.|.++- |.||
T Consensus 133 ~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~---------------~~~~~~~~a~~l~~~G~d~i~v~n-t~~~~~ 196 (300)
T TIGR01037 133 GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP---------------NVTDITEIAKAAEEAGADGLTLIN-TLRGMK 196 (300)
T ss_pred CCccccccCHHHHHHHHHHHHHhcCCCEEEECCC---------------ChhhHHHHHHHHHHcCCCEEEEEc-cCCccc
Confidence 33444556667777777777753 4444333320 123344555667889999998753 3333
Q ss_pred ---------------CCCCCCCC---CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 92 ---------------KYPSSGPN---LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 92 ---------------~y~~~~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|.+ |. +.++.+.+|++.+ ++|+..=||--.+ ++..+++..|..=|=++|.+.
T Consensus 197 ~~~~~~~~~~~~~~gg~sg--~~~~~~~l~~v~~i~~~~---~ipvi~~GGI~s~-~da~~~l~~GAd~V~igr~~l 267 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSG--PAIKPIALRMVYDVYKMV---DIPIIGVGGITSF-EDALEFLMAGASAVQVGTAVY 267 (300)
T ss_pred cccccCceeeCCCCccccc--hhhhHHHHHHHHHHHhcC---CCCEEEECCCCCH-HHHHHHHHcCCCceeecHHHh
Confidence 3332 22 3457778888777 6999988876655 568888889988888888764
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.22 Score=41.62 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=80.3
Q ss_pred hhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029540 4 IVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 4 i~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
...|.+.+.+=.|.- +.++.+...++++++|+.+|..| .++ .++ ...++|++..+|
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-----~~~-~~~--------~~~~~~~~~~~~ 142 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-----AFG-CED--------ASRTDPEELLEL 142 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-----EEE-ETT--------TGGSSHHHHHHH
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-----EeC-ccc--------cccccHHHHHHH
Confidence 347777766544443 46889999999999999999999 332 122 135788888888
Q ss_pred hhh---hCCcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029540 74 IDE---TDIDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 74 v~~---TgvD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+++ .|+|.+.++ +|.. .|.-=.++++.|++... ++||-+| -..|+.-...-.|++.|+.-|..
T Consensus 143 ~~~~~~~g~~~i~l~Dt~G~~-------~P~~v~~lv~~~~~~~~--~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 143 AEALAEAGADIIYLADTVGIM-------TPEDVAELVRALREALP--DIPLGFHAHNDLGLAVANALAALEAGADRIDG 212 (237)
T ss_dssp HHHHHHHT-SEEEEEETTS-S--------HHHHHHHHHHHHHHST--TSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHcCCeEEEeeCccCCc-------CHHHHHHHHHHHHHhcc--CCeEEEEecCCccchhHHHHHHHHcCCCEEEc
Confidence 765 599988765 4433 14333466777887764 2666655 56788888899999999999754
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.3 Score=42.03 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=92.5
Q ss_pred hhhhcC----CCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH
Q 029540 2 EAIVLG----FDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~G----FtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
+|+++| .+.|-+=.|.- +-++|+...++++++|++.|..|. ++ .++ ...++|
T Consensus 77 ~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~----~~~--------~~~~~~ 142 (268)
T cd07940 77 AAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FS----AED--------ATRTDL 142 (268)
T ss_pred HHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--Ee----eec--------CCCCCH
Confidence 466777 88777654533 448999999999999999997666 22 122 134788
Q ss_pred HHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC--CCCCHHHHHHHHhcCCeE
Q 029540 68 NQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA--SGLSAELIKGCIERGVRK 142 (192)
Q Consensus 68 eea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg--SG~~~e~~~~~i~~Gi~K 142 (192)
+...+++++ .|+|.+.++ -.=|.- .|.-=.++++.|++.....++||-+|+= .|+.-.....|++.|+.-
T Consensus 143 ~~~~~~~~~~~~~G~~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~ 217 (268)
T cd07940 143 DFLIEVVEAAIEAGATTINIP--DTVGYL---TPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQ 217 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--CCCCCC---CHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCE
Confidence 887777654 588876553 222221 2444456677777766311278777764 577777888999999887
Q ss_pred e------------ecchHHHHHHHHHhc
Q 029540 143 F------------NVNTEVRKAYMDSLS 158 (192)
Q Consensus 143 I------------Ni~T~l~~a~~~~~~ 158 (192)
| |..|+....+.+...
T Consensus 218 iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 218 VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred EEEEeeccccccccccHHHHHHHHHhcc
Confidence 6 567777777776654
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=47.58 Aligned_cols=120 Identities=16% Similarity=0.266 Sum_probs=80.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|+++|.+.+-+=-|.-+. +| .++.+++|+..|..|++-+.... +.+.+++...++++ +.|
T Consensus 99 ~a~~~Gvd~irif~~lnd~-~n---~~~~i~~ak~~G~~v~~~i~~t~------------~p~~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDP-RN---LQAAIQAAKKHGAHAQGTISYTT------------SPVHTLETYLDLAEELLEMG 162 (582)
T ss_pred HHHHCCCCEEEEEEecCcH-HH---HHHHHHHHHHcCCEEEEEEEecc------------CCCCCHHHHHHHHHHHHHcC
Confidence 5788898876543333333 44 56677899999998887654331 12467776666554 479
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.. .|.-=.++++.|++.+ ++||-+| =.+|+.-...-.|++.|+.-|..
T Consensus 163 ad~I~i~--Dt~G~~---~P~~v~~lv~~lk~~~---~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ 223 (582)
T TIGR01108 163 VDSICIK--DMAGIL---TPKAAYELVSALKKRF---GLPVHLHSHATTGMAEMALLKAIEAGADGIDT 223 (582)
T ss_pred CCEEEEC--CCCCCc---CHHHHHHHHHHHHHhC---CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9987764 333332 2444466677787776 4776665 57899999999999999988754
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.24 Score=42.46 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC
Q 029540 22 DNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK 101 (192)
Q Consensus 22 eNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld 101 (192)
.|-....++++.++..+++|-.=|--- . +. . +..+..+-+++.|+|.|.| |++|++ .|..+
T Consensus 118 ~dp~~l~~iv~av~~~~~PVsvKiR~~-~--~~---------~-~~~~~a~~l~~aGad~i~V-----d~~~~g-~~~a~ 178 (231)
T TIGR00736 118 KNKELLKEFLTKMKELNKPIFVKIRGN-C--IP---------L-DELIDALNLVDDGFDGIHV-----DAMYPG-KPYAD 178 (231)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEeCCC-C--Cc---------c-hHHHHHHHHHHcCCCEEEE-----eeCCCC-Cchhh
Confidence 355677788887776677665544321 0 00 0 1224444478999999977 888986 46689
Q ss_pred HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 102 LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 102 ~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++.+++|++.++ ++|+.--||--.. ++..+++.+|..=|-+++.+.
T Consensus 179 ~~~I~~i~~~~~--~ipIIgNGgI~s~-eda~e~l~~GAd~VmvgR~~l 224 (231)
T TIGR00736 179 MDLLKILSEEFN--DKIIIGNNSIDDI-ESAKEMLKAGADFVSVARAIL 224 (231)
T ss_pred HHHHHHHHHhcC--CCcEEEECCcCCH-HHHHHHHHhCCCeEEEcHhhc
Confidence 999999999873 4999988876544 557777789999888887653
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.91 Score=43.96 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=78.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhhhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~~Tg 78 (192)
.|+++|.+.+-+=-+--+ +++.+..+++|+..|..+|+.+......++ +++- ..+-+.+.|
T Consensus 105 ~a~~~Gid~~rifd~lnd----~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~------------~~~~~~~~a~~l~~~G 168 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMND----PRNLETALKAVRKVGAHAQGTLSYTTSPVH------------TLQTWVDLAKQLEDMG 168 (593)
T ss_pred HHHhcCCCEEEEeeeCCc----HHHHHHHHHHHHHcCCeEEEEEEEeeCCcc------------CHHHHHHHHHHHHHcC
Confidence 477888886653323333 245667789999999999998876532211 2333 233345679
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.. .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-.|++.|+.-|..
T Consensus 169 ad~i~i~--Dt~G~l---~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ 229 (593)
T PRK14040 169 VDSLCIK--DMAGLL---KPYAAYELVSRIKKRV---DVPLHLHCHATTGLSTATLLKAIEAGIDGVDT 229 (593)
T ss_pred CCEEEEC--CCCCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCchHHHHHHHHHHcCCCEEEe
Confidence 9988875 222222 2444456667777766 57766654 7889999999999999988754
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.52 Score=42.11 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=86.0
Q ss_pred hhhhcCCCEeEeeCCC-----------CCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029540 2 EAIVLGFDSLMVDGSH-----------LPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----------l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
.+.++||+-|-+-.+. -.+..|.+.+.++++-.++ .+++|-.=+ +++-. +. .+.++
T Consensus 85 ~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKi-R~g~~-~~----------~t~~~ 152 (333)
T PRK11815 85 LAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKH-RIGID-DQ----------DSYEF 152 (333)
T ss_pred HHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEE-EeeeC-CC----------cCHHH
Confidence 3456788877665432 2356788888888888776 366666544 44321 11 12344
Q ss_pred HHHH---hhhhCCcEEEEecCcC-CCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 70 AEEF---IDETDIDALAVCIGNV-HGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 70 a~~F---v~~TgvD~LAvaiGt~-HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
+.+| +++.|+|+|.|.-+|. +..|.+. .|..+++.++++++.+. ++|++.=||-..+ +++.++++ |+.
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~nGgI~s~-eda~~~l~-~aD 228 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEINGGIKTL-EEAKEHLQ-HVD 228 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEECCcCCH-HHHHHHHh-cCC
Confidence 4444 5578999999875553 3345431 25689999999988742 5999999987765 55777776 677
Q ss_pred EeecchHH
Q 029540 142 KFNVNTEV 149 (192)
Q Consensus 142 KINi~T~l 149 (192)
=|=+++.+
T Consensus 229 gVmIGRa~ 236 (333)
T PRK11815 229 GVMIGRAA 236 (333)
T ss_pred EEEEcHHH
Confidence 77777765
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.3 Score=38.26 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=80.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC-Cc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD-ID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg-vD 80 (192)
+|.++|.+.|.+= .+|+|| ..++.+.|+++|+. ++.+- +.-|+++..+.+.+... ..
T Consensus 110 ~~~~aGvdgviip--Dlp~ee----~~~~~~~~~~~gl~----~i~lv------------~P~T~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 110 KCKEVGVDGVLVA--DLPLEE----SGDLVEAAKKHGVK----PIFLV------------APNADDERLKQIAEKSQGFV 167 (256)
T ss_pred HHHHcCCCEEEEC--CCChHH----HHHHHHHHHHCCCc----EEEEE------------CCCCCHHHHHHHHHhCCCCE
Confidence 5778899887764 467754 56889999998863 23331 12366777778777653 33
Q ss_pred EEEEecCcCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
+.+|+ .|..-. ...+ ..+.++++++.+ +.|+++ |-|+. .++++++++.|..=+=++|.+...+.
T Consensus 168 -y~vs~---~G~TG~-~~~~~~~~~~~i~~lr~~~---~~pi~v--gfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 168 -YLVSR---AGVTGA-RNRAASALNELVKRLKAYS---AKPVLV--GFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred -EEEEC---CCCCCC-cccCChhHHHHHHHHHhhc---CCCEEE--eCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 23332 233321 1222 456667777665 689888 55786 89999999999999999999976553
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.9 Score=42.59 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=104.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCcccc---------c
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~---------~ 60 (192)
++++.|...|-+---.++.++-.+..+++.++|+.+|+.+=- ++| |++ .+|-..... .
T Consensus 315 ~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~adGvHl~-~~d~~~~~~r~~~~~~~~i 393 (502)
T PLN02898 315 AAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADGVHLG-QSDMPVRLARSLLGPGKII 393 (502)
T ss_pred HHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCCEEEeC-hHhcCHHHHHHhcCCCCEE
Confidence 678899999999888889999999999999999988764322 222 232 122100000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...-.+++|+.+ ..+.|+|.+++ |.+.--. ++..|.+.++.++++.+.. ++|+|.=| |+..+.++++.+.|
T Consensus 394 G~S~h~~~e~~~-a~~~gadyi~~--gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiG--GI~~~~~~~~~~~G 465 (502)
T PLN02898 394 GVSCKTPEQAEQ-AWKDGADYIGC--GGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIG--GISASNAASVMESG 465 (502)
T ss_pred EEeCCCHHHHHH-HhhcCCCEEEE--CCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEEC--CCCHHHHHHHHHcC
Confidence 111247788766 44679999874 3332111 1123567899999998776 69999999 67789999999999
Q ss_pred Ce---EeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029540 140 VR---KFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKA 177 (192)
Q Consensus 140 i~---KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (192)
+. =|=+.+.+.. ..||....+...+.+.+
T Consensus 466 ~~~~~gvav~~~i~~---------~~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 466 APNLKGVAVVSALFD---------QEDVLKATRKLHAILTE 497 (502)
T ss_pred CCcCceEEEEeHHhc---------CCCHHHHHHHHHHHHHH
Confidence 88 7777777742 13565555544444443
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.3 Score=38.13 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=78.7
Q ss_pred hhhhcCCCE---eEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhh
Q 029540 2 EAIVLGFDS---LMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFID 75 (192)
Q Consensus 2 ~ai~~GFtS---VM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~ 75 (192)
+|++.|-+- +++.++ +..++..+..+++++.||++|+.+=.....-| .. .+..+ ++++ +.+-..
T Consensus 101 ~A~~~Gad~v~~~~~~g~-~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g-----~~---~e~~~-~~~~i~~a~~~a~ 170 (267)
T PRK07226 101 EAIKLGADAVSVHVNVGS-ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRG-----PG---IKNEY-DPEVVAHAARVAA 170 (267)
T ss_pred HHHHcCCCEEEEEEecCC-hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCC-----Cc---cCCCc-cHHHHHHHHHHHH
Confidence 688889653 334554 34677888999999999999988776432111 10 01122 3333 334445
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHH----HHHHHhcCCeEeecchHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AEL----IKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~----~~~~i~~Gi~KINi~T~l 149 (192)
+.|+|++-.+ |++ +++.|+++.+.. ++|++.=||.... .++ +..+++.|..=+-++..+
T Consensus 171 e~GAD~vKt~-------~~~-----~~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i 234 (267)
T PRK07226 171 ELGADIVKTN-------YTG-----DPESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNV 234 (267)
T ss_pred HHCCCEEeeC-------CCC-----CHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhh
Confidence 7899999776 332 567788777655 6999999988864 344 444569999844444443
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.15 Score=45.98 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=58.6
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH----HHHHHHhhhccCCccEEeecC-CCCCHHHHHHHHhcCC
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD----LLKDLHALSSKKGVLLVLHGA-SGLSAELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~----~L~~I~~~~~~~~iPLVlHGg-SG~~~e~~~~~i~~Gi 140 (192)
+|+++.+.++.-+.|++++-++..+..-.+ ...-||+ .|++|++.+ ++|+++.+. .|++.+..+++.+.|+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p-~g~~~f~~~le~i~~i~~~~---~vPVivK~~g~g~s~~~a~~l~~~Gv 211 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQP-EGDRDFRGWLDNIAEIVSAL---PVPVIVKEVGFGISKETAKRLADAGV 211 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCC-CCcccHHHHHHHHHHHHHhh---CCCEEEEeCCCCCcHHHHHHHHHcCC
Confidence 589999999999999999998765544333 2334674 556666655 799999743 6889999999999999
Q ss_pred eEeec
Q 029540 141 RKFNV 145 (192)
Q Consensus 141 ~KINi 145 (192)
.=|-+
T Consensus 212 d~I~V 216 (352)
T PRK05437 212 KAIDV 216 (352)
T ss_pred CEEEE
Confidence 88887
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.23 Score=41.78 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+++++.|+|.|-+.==+.-| +. +..|++.+++|++.+ ++|+..=||-. +.+++++++..|+..+-
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~-~~---~~~~~~~i~~i~~~~---~~pv~~~GGI~-s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS-EG---RETMLDVVERVAEEV---FIPLTVGGGIR-SLEDARRLLRAGADKVS 98 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc-cc---CcccHHHHHHHHHhC---CCCEEEeCCCC-CHHHHHHHHHcCCceEE
Confidence 499999999999999977765333322 22 344899999999887 69999988887 45678999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 99 ig~~~~ 104 (243)
T cd04731 99 INSAAV 104 (243)
T ss_pred ECchhh
Confidence 999874
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.34 Score=40.71 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
|..+.++.+.+..|+|.+.+ |++|-.+.+. .+..-++.|+++++... ++|++.=| |+..+.++.+++.|+.=+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~--~~v~pg~~~~~~~~~~~~~i~~~~~~~~--~~~I~a~G--GI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLV--MSVEPGFGGQSFIPSMMDKVRALRKKYP--ELDIEVDG--GVGPSTIDKAAEAGANVI 199 (229)
T ss_pred CCHHHHHHHHhccCCCEEEE--EEEecCCCccccCHHHHHHHHHHHHhCC--CCcEEEeC--CCCHHHHHHHHHcCCCEE
Confidence 44455555554445999765 7777544431 23445667777776643 58999999 678999999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=++|.+.
T Consensus 200 vvgsai~ 206 (229)
T PLN02334 200 VAGSAVF 206 (229)
T ss_pred EEChHHh
Confidence 9998874
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.7 Score=37.63 Aligned_cols=149 Identities=19% Similarity=0.145 Sum_probs=92.9
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCC
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDI 79 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tgv 79 (192)
|.+.|.+.|.+=- ...++...++.+++|+..|..|..-+-.. ..++|+...++++ +.|+
T Consensus 91 a~~~gv~~iri~~----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a--------------~~~~~~~~~~~~~~~~~~g~ 152 (266)
T cd07944 91 ASGSVVDMIRVAF----HKHEFDEALPLIKAIKEKGYEVFFNLMAI--------------SGYSDEELLELLELVNEIKP 152 (266)
T ss_pred HhcCCcCEEEEec----ccccHHHHHHHHHHHHHCCCeEEEEEEee--------------cCCCHHHHHHHHHHHHhCCC
Confidence 5567777765532 12468888999999999998776543332 1256777666654 4688
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------ec
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------NV 145 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------Ni 145 (192)
|.+-++ -.=|.. .|.-=.++++.|++.++. ++||-+|+ .-|+.-.....|++.|+.-| |.
T Consensus 153 ~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~~-~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~ 226 (266)
T cd07944 153 DVFYIV--DSFGSM---YPEDIKRIISLLRSNLDK-DIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNL 226 (266)
T ss_pred CEEEEe--cCCCCC---CHHHHHHHHHHHHHhcCC-CceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcH
Confidence 877654 222221 243334555666665521 27887776 45777788888999998776 56
Q ss_pred chHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 029540 146 NTEVRKAYMDSLSRPKSDLIHLMASAKEAM 175 (192)
Q Consensus 146 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (192)
.|+....+.+...+...|+..++..+.+-+
T Consensus 227 ~~E~~v~~l~~~~~~~~dl~~l~~~~~~~~ 256 (266)
T cd07944 227 PTELLLDYLNNKFGKKYNLEPVLELIDEYI 256 (266)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 777766666655334456666655444333
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.27 Score=40.88 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..++.++.|+|.|-+.=- -|.-.+ ...+++++++|.+.+ ++|+-.=||- .+.++++++...|+.+|-
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dl--d~~~~g--~~~~~~~i~~i~~~~---~~pv~~~GGI-~~~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDL--DGAKAG--KPVNLELIEAIVKAV---DIPVQVGGGI-RSLETVEALLDAGVSRVI 101 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeC--CccccC--CcccHHHHHHHHHHC---CCCEEEcCCc-CCHHHHHHHHHcCCCEEE
Confidence 59999888888999999988752 222221 235899999999887 6999886655 355789999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 102 lg~~~l~ 108 (233)
T PRK00748 102 IGTAAVK 108 (233)
T ss_pred ECchHHh
Confidence 9998854
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.8 Score=37.57 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=90.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCccccc--------c
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVEDY--------E 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~~--------~ 61 (192)
++++.|.+.|=+--..++.++-.+..+++.+.|+++|+.+=- ++| |+|. +|....... .
T Consensus 152 ~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~-~d~~~~~~r~~~~~~~ig 230 (312)
T PRK08999 152 RALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTS-AQLAALAARPLPAGRWVA 230 (312)
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcCh-hhcChHhhccCCCCCEEE
Confidence 578899999999888899999999999999999998876522 222 2321 111100000 0
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..--+.+++.+ ..+.|+|.+.+ |-+.-- -|++.|.+.++.|+++.+.+ ++|+|--| |+..+++..+.++|+
T Consensus 231 ~S~h~~~~~~~-a~~~~~dyi~~--gpvf~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~AiG--GI~~~~~~~~~~~g~ 302 (312)
T PRK08999 231 ASCHDAEELAR-AQRLGVDFAVL--SPVQPTASHPGAAPLGWEGFAALIAGV---PLPVYALG--GLGPGDLEEAREHGA 302 (312)
T ss_pred EecCCHHHHHH-HHhcCCCEEEE--CCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEC--CCCHHHHHHHHHhCC
Confidence 01136677665 45679998764 444211 11123568899999998877 69999999 678999999999987
Q ss_pred eEee
Q 029540 141 RKFN 144 (192)
Q Consensus 141 ~KIN 144 (192)
.=|=
T Consensus 303 ~gva 306 (312)
T PRK08999 303 QGIA 306 (312)
T ss_pred CEEE
Confidence 6543
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.62 Score=40.56 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=83.4
Q ss_pred hhhcC-CCEeEeeCC-------CCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029540 3 AIVLG-FDSLMVDGS-------HLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 3 ai~~G-FtSVM~D~S-------~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
+-++| |+-|=+-.| ...+..+.+...++++..++. +++|-.=|.- ..++..+..+.
T Consensus 113 ~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~---------------~~~~~~~~a~~ 177 (301)
T PRK07259 113 LSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP---------------NVTDIVEIAKA 177 (301)
T ss_pred HhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC---------------CchhHHHHHHH
Confidence 44567 777766332 245666778888888888865 4444333320 12344555566
Q ss_pred hhhhCCcEEEEecCcCCCC-----------------CCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 74 IDETDIDALAVCIGNVHGK-----------------YPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~-----------------y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++.|+|.|.+ ++|.||. |.+. ...+.++.+++|++.+ ++|++-=||-- +.++..++
T Consensus 178 l~~~G~d~i~~-~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~GGI~-~~~da~~~ 252 (301)
T PRK07259 178 AEEAGADGLSL-INTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGMGGIS-SAEDAIEF 252 (301)
T ss_pred HHHcCCCEEEE-EccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC---CCCEEEECCCC-CHHHHHHH
Confidence 78899999955 3444443 3221 0124678888898887 69999777544 45678888
Q ss_pred HhcCCeEeecchHHH
Q 029540 136 IERGVRKFNVNTEVR 150 (192)
Q Consensus 136 i~~Gi~KINi~T~l~ 150 (192)
+..|..=|-++|.+.
T Consensus 253 l~aGAd~V~igr~ll 267 (301)
T PRK07259 253 IMAGASAVQVGTANF 267 (301)
T ss_pred HHcCCCceeEcHHHh
Confidence 899998899998875
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.52 Score=40.94 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEE---ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 64 LTDVNQAEEFIDETDIDALAV---CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAv---aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.-||..|++.. +.|+|++-+ -||+-+| -.+.+.|+.|.+.. ++|++.=||-+.|++ ..+++++|.
T Consensus 131 ~dd~~~ar~l~-~~G~~~vmPlg~pIGsg~G-------i~~~~~I~~I~e~~---~vpVI~egGI~tped-a~~AmelGA 198 (248)
T cd04728 131 TDDPVLAKRLE-DAGCAAVMPLGSPIGSGQG-------LLNPYNLRIIIERA---DVPVIVDAGIGTPSD-AAQAMELGA 198 (248)
T ss_pred CCCHHHHHHHH-HcCCCEeCCCCcCCCCCCC-------CCCHHHHHHHHHhC---CCcEEEeCCCCCHHH-HHHHHHcCC
Confidence 35888898855 559999955 3554332 23689999999876 699999999998755 999999999
Q ss_pred eEeecchHHH
Q 029540 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=+=++|.+-
T Consensus 199 dgVlV~SAIt 208 (248)
T cd04728 199 DAVLLNTAIA 208 (248)
T ss_pred CEEEEChHhc
Confidence 9999999885
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.33 Score=46.93 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|.++|.+.+-+=-|.-++ +|+ ++.+++|++.|..|++-+....+ .+.+|+...++++ +.|
T Consensus 104 ~A~~~Gvd~irif~~lnd~-~n~---~~~i~~ak~~G~~v~~~i~~t~~------------p~~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDV-RNM---EVAIKAAKKAGAHVQGTISYTTS------------PVHTIEKYVELAKELEEMG 167 (592)
T ss_pred HHHHCCCCEEEEEEecChH-HHH---HHHHHHHHHcCCEEEEEEEeccC------------CCCCHHHHHHHHHHHHHcC
Confidence 5778888877644333333 454 56678899999998876644321 1345766655544 579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.- .|.-=.++++.|++.+ ++||-+| -.+|+.-...-.|++.|+.-|..
T Consensus 168 ad~I~i~--Dt~G~~---~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 168 CDSICIK--DMAGLL---TPYAAYELVKALKEEV---DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred CCEEEEC--CcCCCc---CHHHHHHHHHHHHHhC---CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9988765 222322 2433456667777766 4676665 58899999999999999987754
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.86 E-value=2 Score=36.82 Aligned_cols=145 Identities=21% Similarity=0.181 Sum_probs=92.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
+|++.|.+.|.+=.|.-+. ...++.+++|+..|..|..-+-.. ..++|+...+++++ .|
T Consensus 93 ~a~~~g~~~iri~~~~s~~----~~~~~~i~~ak~~G~~v~~~~~~~--------------~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 93 MAADLGVDVVRVATHCTEA----DVSEQHIGAARKLGMDVVGFLMMS--------------HMASPEELAEQAKLMESYG 154 (263)
T ss_pred HHHHcCCCEEEEEechhhH----HHHHHHHHHHHHCCCeEEEEEEec--------------cCCCHHHHHHHHHHHHHcC
Confidence 5788899988875444433 356889999999998777654221 24677777776554 68
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------e
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|.+.++ -.=|.- .|.-=.++++.|++..+ .+||.+|+ .-|+.-.....|++.|+.-| |
T Consensus 155 ~d~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN 227 (263)
T cd07943 155 ADCVYVT--DSAGAM---LPDDVRERVRALREALD--PTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGN 227 (263)
T ss_pred CCEEEEc--CCCCCc---CHHHHHHHHHHHHHhCC--CceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCC
Confidence 9976553 332322 13322344566666653 24888776 45777778889999998877 5
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHHHH
Q 029540 145 VNTEVRKAYMDSLS-RPKSDLIHLMASA 171 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~~~ 171 (192)
..|+...++.+... +++.|+..++..+
T Consensus 228 ~~~E~lv~~L~~~g~~~~idl~~l~~~~ 255 (263)
T cd07943 228 TPLEVLVAVLERMGIETGIDLYKLMDAA 255 (263)
T ss_pred ccHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 67888777776542 3344655554433
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.98 Score=38.21 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=78.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+.+.+|.+-|.+-.+.+.- + .. -++++.+| +++-.-=|.+. ....--+|.+..+.+++
T Consensus 95 ~~l~~Ga~~viigt~~~~~-~---~~---~~~~~~~~~~~iivslD~~~~~~~----------~~~~~~~~~~~~~~~~~ 157 (233)
T cd04723 95 EWLKRGASRVIVGTETLPS-D---DD---EDRLAALGEQRLVLSLDFRGGQLL----------KPTDFIGPEELLRRLAK 157 (233)
T ss_pred HHHHcCCCeEEEcceeccc-h---HH---HHHHHhcCCCCeEEEEeccCCeec----------cccCcCCHHHHHHHHHH
Confidence 4678898888887666654 3 22 23344443 22222111111 11234578887777777
Q ss_pred hCCcEEE-EecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 77 TDIDALA-VCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LA-vaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
. ++.|- ..+... |. ....|++.+++|.+.+ ++|+..-||-+.+++ ++++.+.|+.++-++|.+.
T Consensus 158 ~-~~~li~~di~~~-G~----~~g~~~~~~~~i~~~~---~ipvi~~GGi~s~ed-i~~l~~~G~~~vivGsal~ 222 (233)
T cd04723 158 W-PEELIVLDIDRV-GS----GQGPDLELLERLAARA---DIPVIAAGGVRSVED-LELLKKLGASGALVASALH 222 (233)
T ss_pred h-CCeEEEEEcCcc-cc----CCCcCHHHHHHHHHhc---CCCEEEeCCCCCHHH-HHHHHHcCCCEEEEehHHH
Confidence 6 76443 334332 11 1335899999999887 699999999886655 8999999999999999874
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.43 Score=45.02 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=85.5
Q ss_pred hhhhcCCCEeEeeCCCCC----------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHLP----------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~----------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|.-| .+||++...+.+++|+..|..|+--+ || ...|+|+-+.
T Consensus 81 ~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed--------~~r~~~~~l~ 146 (488)
T PRK09389 81 AALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------ED--------ASRADLDFLK 146 (488)
T ss_pred HHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------ee--------CCCCCHHHHH
Confidence 578889888776666554 58999999999999999998776532 22 2468898888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
++++ +.|+|.+-++ -.=|.. .|.-=.++++.+++.. ++||-+|+ ..|+.-..-..|+..|+..|+.
T Consensus 147 ~~~~~~~~~Ga~~i~l~--DTvG~~---~P~~~~~lv~~l~~~~---~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~ 217 (488)
T PRK09389 147 ELYKAGIEAGADRICFC--DTVGIL---TPEKTYELFKRLSELV---KGPVSIHCHNDFGLAVANTLAALAAGADQVHV 217 (488)
T ss_pred HHHHHHHhCCCCEEEEe--cCCCCc---CHHHHHHHHHHHHhhc---CCeEEEEecCCccHHHHHHHHHHHcCCCEEEE
Confidence 7764 4688886553 222222 2433345566676655 58888865 5677788888899999988753
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.44 Score=44.12 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=81.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
..+++|-+-|-+|.++-. .+++ .+.++..++. ++. -|.+ ...++++|+.-+ +.|+
T Consensus 160 ~lv~aGvDvI~iD~a~g~-~~~~---~~~v~~ik~~~p~~~------vi~g------------~V~T~e~a~~l~-~aGa 216 (404)
T PRK06843 160 ELVKAHVDILVIDSAHGH-STRI---IELVKKIKTKYPNLD------LIAG------------NIVTKEAALDLI-SVGA 216 (404)
T ss_pred HHHhcCCCEEEEECCCCC-ChhH---HHHHHHHHhhCCCCc------EEEE------------ecCCHHHHHHHH-HcCC
Confidence 357889999999999943 2222 2333333431 111 1111 246778888755 6899
Q ss_pred cEEEEecCc--CCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGN--VHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt--~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++.|++|. .|+.- ..+...-++..+.++.+..+..++|+..-||--.|.+ +.+|+.+|..=|=++|.+.
T Consensus 217 D~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~D-i~KALalGA~aVmvGs~~a 289 (404)
T PRK06843 217 DCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGD-VVKAIAAGADSVMIGNLFA 289 (404)
T ss_pred CEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHH-HHHHHHcCCCEEEEcceee
Confidence 999987753 34321 1111112677777777766555799999998877655 9999999999999999874
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.1 Score=40.53 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
+++++|+. +.+.|||.+-|+- ||...-....--++.|.+|++.... ..+||..=||-..+. ++-|++.+|..=
T Consensus 222 ~~~~dA~~-a~~~G~d~I~vsn---hgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~-Dv~kalaLGA~a 296 (344)
T cd02922 222 QTVEDAVL-AAEYGVDGIVLSN---HGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGT-DVLKALCLGAKA 296 (344)
T ss_pred CCHHHHHH-HHHcCCCEEEEEC---CCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHH-HHHHHHHcCCCE
Confidence 56888876 5689999999882 7654321111125567888875422 148988888776655 599999999999
Q ss_pred eecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 143 FNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 143 INi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+-++|.+..+.... -.+-+....+.+++.++..|.++|+.
T Consensus 297 V~iG~~~l~~l~~~-------G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 297 VGLGRPFLYALSAY-------GEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred EEECHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998877431 12334455677888889999999975
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.9 Score=39.90 Aligned_cols=144 Identities=20% Similarity=0.292 Sum_probs=99.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc---ccccCCCCCccc-------c--cc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG---RLSGTEDGLTVE-------D--YE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG---~i~g~e~~~~~~-------~--~~ 61 (192)
++++.|-+.|=+=--.+|-++-.+..+++.++|+++|+.+=- ++| |+|. +|..... . -.
T Consensus 27 ~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind~~~la~~~~~dVHlg~-~dl~~~~~r~~~~~~~~iG 105 (755)
T PRK09517 27 SAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDRLDVAVELGLHVHIGQ-GDTPYTQARRLLPAHLELG 105 (755)
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCeecCC-CcCCHHHHHHhcCCCCEEE
Confidence 578899999999989999999999999999999998876544 555 4543 2211000 0 01
Q ss_pred ccCCCHHHHHHHhh---hh---CCcEEEEecCcCCCCC-CCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029540 62 AKLTDVNQAEEFID---ET---DIDALAVCIGNVHGKY-PSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 62 ~~~T~peea~~Fv~---~T---gvD~LAvaiGt~HG~y-~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
..--+.+|+.+-.. .. |+|.+.+ |.++--- |++ .|.+.++.|+++.+.++..++|+|--| |+..+++.
T Consensus 106 ~S~h~~~e~~~~~~~~~~~g~~gaDYi~~--Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiG--GI~~~~~~ 181 (755)
T PRK09517 106 LTIETLDQLEAVIAQCAETGVALPDVIGI--GPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIG--GVGLRNAA 181 (755)
T ss_pred EeCCCHHHHHHHHhhhccCCCCCCCEEEE--CCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEEC--CCCHHHHH
Confidence 11235666654322 23 4998875 5553221 111 246899999999988842239999999 88999999
Q ss_pred HHHhcCCeEeecchHHH
Q 029540 134 GCIERGVRKFNVNTEVR 150 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~l~ 150 (192)
++.+.|+.=|=+-+.+.
T Consensus 182 ~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 182 ELAATGIDGLCVVSAIM 198 (755)
T ss_pred HHHHcCCCEEEEehHhh
Confidence 99999999888877764
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.58 Score=44.38 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=79.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
..+++|-+-|-+|.++-.-. .+.+.++..++.-= ++--|. ...+++++|+.-+ +.|+|+
T Consensus 255 ~l~~ag~d~i~iD~~~g~~~----~~~~~i~~ik~~~p----~~~vi~------------g~v~t~e~a~~a~-~aGaD~ 313 (505)
T PLN02274 255 HLVKAGVDVVVLDSSQGDSI----YQLEMIKYIKKTYP----ELDVIG------------GNVVTMYQAQNLI-QAGVDG 313 (505)
T ss_pred HHHHcCCCEEEEeCCCCCcH----HHHHHHHHHHHhCC----CCcEEE------------ecCCCHHHHHHHH-HcCcCE
Confidence 35788999999999873222 22233444443200 011111 1247888998866 699999
Q ss_pred EEEecCcCCCCCCC-----CCCC-CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPS-----SGPN-LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~-----~~p~-ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.|++|+-.-.|.. +.|. =.+..+.++.+.. ++|+..=||-..|.+ +.+|+.+|..=+-++|.+.
T Consensus 314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~---~vpVIadGGI~~~~d-i~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH---GVPVIADGGISNSGH-IVKALTLGASTVMMGSFLA 384 (505)
T ss_pred EEECCCCCccccCccccccCCCcccHHHHHHHHHHhc---CCeEEEeCCCCCHHH-HHHHHHcCCCEEEEchhhc
Confidence 99876533212211 1122 1444566666554 699999999988855 9999999999999999884
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.84 Score=41.60 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=90.8
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhCCCeEEEecc-ccccCCCCCcccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSKGMLVEAELG-RLSGTEDGLTVED 59 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG-~i~g~e~~~~~~~ 59 (192)
++|+++||+-|-|=|+|= ++|.=.+.++||++-.++. |.=+.=+| ++...+. .
T Consensus 156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~-vg~~~~vg~Rls~~d~--~--- 229 (363)
T COG1902 156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA-VGADFPVGVRLSPDDF--F--- 229 (363)
T ss_pred HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHH-hCCCceEEEEECcccc--C---
Confidence 479999999999999983 5788899999999999863 11111011 1111111 0
Q ss_pred ccccCCCHHHHHHH---hhhhC-CcEEEEecCcCCC--CCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETD-IDALAVCIGNVHG--KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~Tg-vD~LAvaiGt~HG--~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
...-.+++++.++ +++.| ||.|-++-|..+. ......|.......+.|+..+ .+|+..=|+ ..+.++-.
T Consensus 230 -~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~---~~pvi~~G~-i~~~~~Ae 304 (363)
T COG1902 230 -DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV---RIPVIAVGG-INDPEQAE 304 (363)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc---CCCEEEeCC-CCCHHHHH
Confidence 0112455565555 56689 8999999999862 222111333445556788777 588877776 77888899
Q ss_pred HHHhcC-CeEeecchHH
Q 029540 134 GCIERG-VRKFNVNTEV 149 (192)
Q Consensus 134 ~~i~~G-i~KINi~T~l 149 (192)
+.++.| +-=|=++.++
T Consensus 305 ~~l~~g~aDlVa~gR~~ 321 (363)
T COG1902 305 EILASGRADLVAMGRPF 321 (363)
T ss_pred HHHHcCCCCEEEechhh
Confidence 999998 6677777665
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.3 Score=38.15 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=93.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~Tg 78 (192)
+|.++|.+.|-+=.+ ....+ ..++.+++|+..|..|.+-+-. ...++|++..+++ ++.|
T Consensus 95 ~a~~~gvd~iri~~~-~~e~d---~~~~~i~~ak~~G~~v~~~l~~--------------s~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 95 AAYDAGARTVRVATH-CTEAD---VSEQHIGMARELGMDTVGFLMM--------------SHMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred HHHHCCCCEEEEEec-cchHH---HHHHHHHHHHHcCCeEEEEEEc--------------ccCCCHHHHHHHHHHHHhcC
Confidence 578889888876443 33333 3579999999999776643311 1357787776665 4579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC--CCCCHHHHHHHHhcCCeEe------------e
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA--SGLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg--SG~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|++-++ -.-|... |.-=.++++.|++..+ +++|+-+|+= -|+.-..-..|++.|+.-| |
T Consensus 157 a~~i~i~--DT~G~~~---P~~v~~~v~~l~~~l~-~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN 230 (333)
T TIGR03217 157 ADCVYIV--DSAGAML---PDDVRDRVRALKAVLK-PETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGN 230 (333)
T ss_pred CCEEEEc--cCCCCCC---HHHHHHHHHHHHHhCC-CCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccC
Confidence 9976543 3333322 3222344556665552 1388888875 5666778888999998887 5
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHHHHHHHH
Q 029540 145 VNTEVRKAYMDSLS-RPKSDLIHLMASAKEAM 175 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~~~~~~~ 175 (192)
..|+...++.+... +...|+..++..+..-+
T Consensus 231 ~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v 262 (333)
T TIGR03217 231 APLEVFVAVLDRLGWNTGCDLFKLMDAAEDIV 262 (333)
T ss_pred ccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 67888777776542 33446655555444333
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.59 Score=44.17 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=81.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
..+++|.+-|-+|.++-.-...+...+++.+.- + ++.|=+ | .-.++++|+..+ +-|+|+
T Consensus 248 ~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-~-~~~v~a--G----------------~V~t~~~a~~~~-~aGad~ 306 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-P-HVDIIA--G----------------NVVTADQAKNLI-DAGADG 306 (495)
T ss_pred HHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-C-CceEEE--C----------------CcCCHHHHHHHH-HcCCCE
Confidence 457889999999997542222233333333311 1 222222 1 236778888755 789999
Q ss_pred EEEecCcC-----CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNV-----HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~-----HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|++|.- +-...-+.| ++..+.++.+..+..++|+.-=||-..|.| +.+|+.+|..=+-++|.+.
T Consensus 307 I~vg~g~Gs~~~t~~~~~~g~p--~~~ai~~~~~~~~~~~v~vIadGGi~~~~d-i~kAla~GA~~Vm~G~~~a 377 (495)
T PTZ00314 307 LRIGMGSGSICITQEVCAVGRP--QASAVYHVARYARERGVPCIADGGIKNSGD-ICKALALGADCVMLGSLLA 377 (495)
T ss_pred EEECCcCCcccccchhccCCCC--hHHHHHHHHHHHhhcCCeEEecCCCCCHHH-HHHHHHcCCCEEEECchhc
Confidence 98876532 211111124 456677777776656899999999887765 9999999999999999874
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.27 Score=41.80 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=61.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+..+..|+|.+-+.==+.-+.+ -..+++.+++|++.+ ++|+..=||-.. .+++++++..|+.++-
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~----~~~~~~~i~~i~~~~---~ipv~~~GGi~s-~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEG----RDTMLDVVERVAEQV---FIPLTVGGGIRS-VEDARRLLRAGADKVS 101 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccc----CcchHHHHHHHHHhC---CCCEEeeCCCCC-HHHHHHHHHcCCCEEE
Confidence 48988777788999999988644433333 246899999999887 699888887764 5669999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 102 igt~~l 107 (253)
T PRK02083 102 INSAAV 107 (253)
T ss_pred EChhHh
Confidence 999763
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.9 Score=41.48 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-----HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-----LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-----~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
..+|++|+. +.+.|+|.+.|+- ||. ..+| ++.|.++++.+.. .+|+..=||-..+.| +.|++.+
T Consensus 231 V~~~~dA~~-a~~~GvD~I~vsn---~GG-----r~~d~~~~t~~~L~ev~~av~~-~ipVi~dGGIr~g~D-v~KALal 299 (364)
T PLN02535 231 VLTREDAIK-AVEVGVAGIIVSN---HGA-----RQLDYSPATISVLEEVVQAVGG-RVPVLLDGGVRRGTD-VFKALAL 299 (364)
T ss_pred CCCHHHHHH-HHhcCCCEEEEeC---CCc-----CCCCCChHHHHHHHHHHHHHhc-CCCEEeeCCCCCHHH-HHHHHHc
Confidence 378999876 5578999998762 442 2233 6778888776632 599999999887766 8899999
Q ss_pred CCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 139 GVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 139 Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
|..-+-+++.+.++....- ..-...+.+.+++.++..|.+.|+.
T Consensus 300 GA~aV~vGr~~l~~l~~~g-------~~gv~~~l~~l~~el~~~m~l~G~~ 343 (364)
T PLN02535 300 GAQAVLVGRPVIYGLAAKG-------EDGVRKVIEMLKDELEITMALSGCP 343 (364)
T ss_pred CCCEEEECHHHHhhhhhcc-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999987654210 1123344555677777888888764
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.12 Score=45.26 Aligned_cols=71 Identities=18% Similarity=0.383 Sum_probs=50.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|++.||+|.- |.+..+++|++.+. -++.+|++ | .. +|+.+++|. +|||
T Consensus 197 ~A~~~GaDiI~LDn~------~~e~l~~~v~~~~~~~~~~~ieAs-----G------------gI-t~~ni~~ya-~~Gv 251 (273)
T PRK05848 197 NAMNAGADIVMCDNM------SVEEIKEVVAYRNANYPHVLLEAS-----G------------NI-TLENINAYA-KSGV 251 (273)
T ss_pred HHHHcCCCEEEECCC------CHHHHHHHHHHhhccCCCeEEEEE-----C------------CC-CHHHHHHHH-HcCC
Confidence 689999999999984 55567777777543 35667777 1 12 678999976 9999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.+. +|.. |.+ .|.+||.
T Consensus 252 D~Is--vG~l---~~s-a~~~D~s 269 (273)
T PRK05848 252 DAIS--SGSL---IHQ-ATWIDMS 269 (273)
T ss_pred CEEE--eChh---hcC-CCcccee
Confidence 9765 4543 443 3667764
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.14 Score=43.09 Aligned_cols=121 Identities=26% Similarity=0.241 Sum_probs=77.8
Q ss_pred hhhhcCCCEeEe------eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH---HHHHH
Q 029540 2 EAIVLGFDSLMV------DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---NQAEE 72 (192)
Q Consensus 2 ~ai~~GFtSVM~------D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---eea~~ 72 (192)
+|++.|-+-|.+ ++|.. .+++++..+++++.||.+|+.|=-| +.+.+.+-.. .+ +| ..|-+
T Consensus 84 ~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~-------~~-~~~~I~~a~r 153 (236)
T PF01791_consen 84 EAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVAD-------EK-KPDLIARAAR 153 (236)
T ss_dssp HHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSS-------TT-HHHHHHHHHH
T ss_pred HHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcc-------cc-cHHHHHHHHH
Confidence 578888776642 34444 8999999999999999999999999 7764332100 11 43 34555
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc----EEeecCCCCCHHHHHH-------HHhcCCe
Q 029540 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL----LVLHGASGLSAELIKG-------CIERGVR 141 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP----LVlHGgSG~~~e~~~~-------~i~~Gi~ 141 (192)
-..+.|+|++=.+.|..||... -|.++++++-+.. ++| +++=||. +.++|.+ +++.|..
T Consensus 154 ia~e~GaD~vKt~tg~~~~~t~-----~~~~~~~~~~~~~---~~p~~~~Vk~sGGi--~~~~~~~~l~~a~~~i~aGa~ 223 (236)
T PF01791_consen 154 IAAELGADFVKTSTGKPVGATP-----EDVELMRKAVEAA---PVPGKVGVKASGGI--DAEDFLRTLEDALEFIEAGAD 223 (236)
T ss_dssp HHHHTT-SEEEEE-SSSSCSHH-----HHHHHHHHHHHTH---SSTTTSEEEEESSS--SHHHHHHSHHHHHHHHHTTHS
T ss_pred HHHHhCCCEEEecCCccccccH-----HHHHHHHHHHHhc---CCCcceEEEEeCCC--ChHHHHHHHHHHHHHHHcCCh
Confidence 5667999999999994443221 2455555555444 689 9999976 5555443 4477764
Q ss_pred E
Q 029540 142 K 142 (192)
Q Consensus 142 K 142 (192)
.
T Consensus 224 ~ 224 (236)
T PF01791_consen 224 R 224 (236)
T ss_dssp E
T ss_pred h
Confidence 4
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.85 Score=36.87 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=50.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH---HHHHHHHhhhc--cCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL---DLLKDLHALSS--KKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~---~~L~~I~~~~~--~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
|..+..+++.+. +|.+.+ ++.|....+ ..++. +.++++++.+. ..++|+++=| |+..++++++++.|
T Consensus 116 ~~~~~~~~~~~~--~d~i~~--~~~~~g~tg--~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G--GI~~env~~~~~~g 187 (211)
T cd00429 116 TPVEVLEPYLDE--VDLVLV--MSVNPGFGG--QKFIPEVLEKIRKLRELIPENNLNLLIEVDG--GINLETIPLLAEAG 187 (211)
T ss_pred CCHHHHHHHHhh--CCEEEE--EEECCCCCC--cccCHHHHHHHHHHHHHHHhcCCCeEEEEEC--CCCHHHHHHHHHcC
Confidence 334556666544 787754 455532221 34444 44455555542 0138998888 78889999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|-+++.+.
T Consensus 188 ad~iivgsai~ 198 (211)
T cd00429 188 ADVLVAGSALF 198 (211)
T ss_pred CCEEEECHHHh
Confidence 99999999885
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.74 Score=43.81 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=80.5
Q ss_pred hhhcCCCEeEeeCC----------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029540 3 AIVLGFDSLMVDGS----------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSVM~D~S----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++|.+-|.+=.| ..+.+|+++..++.+++|+.+|..|+- + .+.-. +...|+|+-+.+
T Consensus 94 ~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~--~----~e~~~-----Da~r~d~~~l~~ 162 (524)
T PRK12344 94 LLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF--D----AEHFF-----DGYKANPEYALA 162 (524)
T ss_pred HHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE--c----ccccc-----ccccCCHHHHHH
Confidence 45666655554322 346799999999999999999987762 1 12100 113488988877
Q ss_pred Hhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 73 FID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 73 Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++ +.|+|.+-++ -.=|.- .|.-=.++++.|++.+ ++||-+|+ ..|+.-..--.|+..|+..|+
T Consensus 163 ~~~~~~~~Gad~i~l~--DTvG~~---~P~~v~~li~~l~~~~---~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd 231 (524)
T PRK12344 163 TLKAAAEAGADWVVLC--DTNGGT---LPHEVAEIVAEVRAAP---GVPLGIHAHNDSGCAVANSLAAVEAGARQVQ 231 (524)
T ss_pred HHHHHHhCCCCeEEEc--cCCCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 764 5789987654 222221 2443456667777766 58888776 456777777888888888774
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.5 Score=39.73 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=84.2
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ . ++|...+...|+++-.++. | +.|--=|+. .+ ....
T Consensus 157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~---~~-~~~~ 232 (370)
T cd02929 157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSV---DE-LIGP 232 (370)
T ss_pred HHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecH---HH-hcCC
Confidence 36889999999998776 1 5789999999999988873 3 333333331 11 1100
Q ss_pred ccccccCCCHHHHHHHhhhh--CCcEEEEecCcC--CCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH
Q 029540 58 EDYEAKLTDVNQAEEFIDET--DIDALAVCIGNV--HGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI 132 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~T--gvD~LAvaiGt~--HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~ 132 (192)
. ...+++++.+|++.- .+|++-|+.|+. ++.... ..+...++..++|++.+ ++|+..-|+-- +.++.
T Consensus 233 ---~-g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~-~~~~~ 304 (370)
T cd02929 233 ---G-GIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT---SKPVVGVGRFT-SPDKM 304 (370)
T ss_pred ---C-CCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC---CCCEEEeCCCC-CHHHH
Confidence 0 123577777775432 489999999964 222111 01334577788999888 69988888643 55778
Q ss_pred HHHHhcCC
Q 029540 133 KGCIERGV 140 (192)
Q Consensus 133 ~~~i~~Gi 140 (192)
.++++.|.
T Consensus 305 ~~~l~~g~ 312 (370)
T cd02929 305 VEVVKSGI 312 (370)
T ss_pred HHHHHcCC
Confidence 88998874
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.87 Score=38.69 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=78.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC---CeEEEec------c--ccccCCCCCccccccccCCCHHHH
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG---MLVEAEL------G--RLSGTEDGLTVEDYEAKLTDVNQA 70 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g---v~VEaEl------G--~i~g~e~~~~~~~~~~~~T~peea 70 (192)
+++..|.+.||+..+.+. |.... .++++.+| +-+-..+ | .|-- .. +. +..-.++.+.
T Consensus 91 ~~l~~Ga~~Viigt~~l~---~p~~~---~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~-~~----~~-~~~~~~~~~~ 158 (253)
T PRK02083 91 RLLRAGADKVSINSAAVA---NPELI---SEAADRFGSQCIVVAIDAKRDPEPGRWEVYT-HG----GR-KPTGLDAVEW 158 (253)
T ss_pred HHHHcCCCEEEEChhHhh---CcHHH---HHHHHHcCCCCEEEEEEeccCCCCCCEEEEE-cC----Cc-eecCCCHHHH
Confidence 567899999999866554 33333 34455554 2222221 2 1100 00 00 0111255565
Q ss_pred HHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHH
Q 029540 71 EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEV 149 (192)
Q Consensus 71 ~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l 149 (192)
.+-+.+.|+|.+-+. +.+ .. +....+|+++++++.+.+ ++|+..-||-+.+++ +.++.+ .|+.-+=++|.+
T Consensus 159 ~~~~~~~g~~~ii~~--~i~-~~-g~~~g~d~~~i~~~~~~~---~ipvia~GGv~s~~d-~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 159 AKEVEELGAGEILLT--SMD-RD-GTKNGYDLELTRAVSDAV---NVPVIASGGAGNLEH-FVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHcCCCEEEEc--CCc-CC-CCCCCcCHHHHHHHHhhC---CCCEEEECCCCCHHH-HHHHHHhCCccEEeEhHHH
Confidence 555678899987552 222 10 112345899999999887 699999999886655 667776 599999999887
Q ss_pred H
Q 029540 150 R 150 (192)
Q Consensus 150 ~ 150 (192)
.
T Consensus 231 ~ 231 (253)
T PRK02083 231 H 231 (253)
T ss_pred H
Confidence 4
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=94.27 E-value=3.2 Score=35.91 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=78.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-++|.+.|.+= .||+||.- ++.+.|+++|+..=- -+ +.-|+++-.++-.+.+. ++
T Consensus 101 ~~~~aGv~Gviip--DLP~ee~~----~~~~~~~~~gl~~I~---lv-------------~Ptt~~~ri~~ia~~~~-gF 157 (250)
T PLN02591 101 TIKEAGVHGLVVP--DLPLEETE----ALRAEAAKNGIELVL---LT-------------TPTTPTERMKAIAEASE-GF 157 (250)
T ss_pred HHHHcCCCEEEeC--CCCHHHHH----HHHHHHHHcCCeEEE---Ee-------------CCCCCHHHHHHHHHhCC-Cc
Confidence 5778999999886 58987654 888889988764311 01 01233444555444432 22
Q ss_pred E-EEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHH
Q 029540 82 L-AVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 82 L-Ava-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
+ .|| -|+. |.-.. .|.--.+.++++++.+ ++|+++ |.|++ .|+++++.+.|..=+=|+|.+-+..
T Consensus 158 IY~Vs~~GvT-G~~~~-~~~~~~~~i~~vk~~~---~~Pv~v--GFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 158 VYLVSSTGVT-GARAS-VSGRVESLLQELKEVT---DKPVAV--GFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred EEEeeCCCCc-CCCcC-CchhHHHHHHHHHhcC---CCceEE--eCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 2 233 3433 32111 1221133467777765 699998 89999 9999999999999999999986444
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.3 Score=39.44 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=82.5
Q ss_pred hhhhcCCC--------EeEee-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029540 2 EAIVLGFD--------SLMVD-GSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 2 ~ai~~GFt--------SVM~D-~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
+|+++|.+ |+++- ||. ...++++...++++-||++|++|=+.+=--|.. ... +.......-|.+
T Consensus 123 eAvrlG~~~~~~AdAV~v~v~~Gs~-~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~---i~~---~~~~~~ia~aaR 195 (304)
T PRK06852 123 QVVEFKENSGLNILGVGYTIYLGSE-YESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKA---VKD---EKDPHLIAGAAG 195 (304)
T ss_pred HHHhcCCccCCCceEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcc---cCC---CccHHHHHHHHH
Confidence 68888833 33333 343 447899999999999999999998754222211 110 101122344556
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH----HHHHh-cCCeEeecch
Q 029540 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI----KGCIE-RGVRKFNVNT 147 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~----~~~i~-~Gi~KINi~T 147 (192)
-..+-|.|.+=+-.=+.||. =+.+.++++-+.+. ++|+|+=||+-.++++| +.+++ .|..=+-++-
T Consensus 196 iaaELGADIVKv~y~~~~~~-------g~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GR 266 (304)
T PRK06852 196 VAACLGADFVKVNYPKKEGA-------NPAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGR 266 (304)
T ss_pred HHHHHcCCEEEecCCCcCCC-------CCHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeech
Confidence 66778999998863222221 24677777766552 59999999999987654 44566 6766666553
Q ss_pred H
Q 029540 148 E 148 (192)
Q Consensus 148 ~ 148 (192)
-
T Consensus 267 N 267 (304)
T PRK06852 267 N 267 (304)
T ss_pred h
Confidence 3
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.34 Score=42.08 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEE---ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 64 LTDVNQAEEFIDETDIDALAV---CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAv---aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.-||..|++.. +.|+|++-+ -||+-+| -.+.+.|+.|.+.. ++|++.=||-+.|++ ..+++++|.
T Consensus 131 ~~d~~~ak~l~-~~G~~~vmPlg~pIGsg~g-------i~~~~~i~~i~e~~---~vpVIveaGI~tped-a~~AmelGA 198 (250)
T PRK00208 131 TDDPVLAKRLE-EAGCAAVMPLGAPIGSGLG-------LLNPYNLRIIIEQA---DVPVIVDAGIGTPSD-AAQAMELGA 198 (250)
T ss_pred CCCHHHHHHHH-HcCCCEeCCCCcCCCCCCC-------CCCHHHHHHHHHhc---CCeEEEeCCCCCHHH-HHHHHHcCC
Confidence 35889999865 559999955 4665443 23577899998875 699999999988755 999999999
Q ss_pred eEeecchHHH
Q 029540 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=+=++|.+-
T Consensus 199 dgVlV~SAIt 208 (250)
T PRK00208 199 DAVLLNTAIA 208 (250)
T ss_pred CEEEEChHhh
Confidence 9999999884
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.83 Score=39.30 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=79.8
Q ss_pred hhhcCCCEeEeeCCCC------CHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCC--CHHHHHHH
Q 029540 3 AIVLGFDSLMVDGSHL------PFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLT--DVNQAEEF 73 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T--~peea~~F 73 (192)
+.++|++-|-+..|.- ++..|-+..+++++..++. +++|=.=++.. .+ +..+..+.
T Consensus 120 ~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------------~~~~~~~~~a~~ 184 (289)
T cd02810 120 IERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------------FDLEDIVELAKA 184 (289)
T ss_pred HHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------------CCHHHHHHHHHH
Confidence 4566777777776532 2344556667777766653 44443333311 11 23344445
Q ss_pred hhhhCCcEEEEecCc----------------CCCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 74 IDETDIDALAVCIGN----------------VHGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 74 v~~TgvD~LAvaiGt----------------~HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++.|+|.|.+.-++ .||.|.+ .+ .+.++.+++|++.+. .++|++-=||--. .+++.++
T Consensus 185 l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg-~~~~~~~~~~v~~i~~~~~-~~ipiia~GGI~~-~~da~~~ 261 (289)
T cd02810 185 AERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG-APIRPLALRWVARLAARLQ-LDIPIIGVGGIDS-GEDVLEM 261 (289)
T ss_pred HHHcCCCEEEEEcccCccceecccCccccCCCCCccCc-HHHHHHHHHHHHHHHHhcC-CCCCEEEECCCCC-HHHHHHH
Confidence 677899999987443 2333332 11 134666777877662 1489998886553 4679999
Q ss_pred HhcCCeEeecchHHHH
Q 029540 136 IERGVRKFNVNTEVRK 151 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~ 151 (192)
+..|..=|=++|.+..
T Consensus 262 l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 262 LMAGASAVQVATALMW 277 (289)
T ss_pred HHcCccHheEcHHHHh
Confidence 9999988989888753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.7 Score=35.77 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=78.4
Q ss_pred hhhhcCCCEeEe-eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh-hhCC
Q 029540 2 EAIVLGFDSLMV-DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID-ETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~-~Tgv 79 (192)
++.++|.+.+.+ | ||+| ...++.+.|+++|+. ++.+- +.-|+++..+..++ ..|.
T Consensus 99 ~~~~aG~~giiipD---l~~e----e~~~~~~~~~~~g~~----~i~~i------------~P~T~~~~i~~i~~~~~~~ 155 (242)
T cd04724 99 DAKEAGVDGLIIPD---LPPE----EAEEFREAAKEYGLD----LIFLV------------APTTPDERIKKIAELASGF 155 (242)
T ss_pred HHHHCCCcEEEECC---CCHH----HHHHHHHHHHHcCCc----EEEEe------------CCCCCHHHHHHHHhhCCCC
Confidence 477889988777 5 4665 467888899988763 22221 12355565666665 3332
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
.+.+++.-..|.-.. .+.--.+.++++++.. ++|++. |.|+. .++++++++. ..=+=++|.+.....
T Consensus 156 -vy~~s~~g~tG~~~~-~~~~~~~~i~~lr~~~---~~pI~v--ggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 156 -IYYVSRTGVTGARTE-LPDDLKELIKRIRKYT---DLPIAV--GFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred -EEEEeCCCCCCCccC-CChhHHHHHHHHHhcC---CCcEEE--EccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 345565555554321 1222346677777765 699999 44666 6689999999 888999998876553
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.6 Score=40.15 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=82.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..++++|+..+ +.|||.+-|| | ||.-......--++.|.+|.+.+. .++|+..=||--.+.| +-||+.+|-.=+
T Consensus 253 V~s~~dA~~a~-~~Gvd~I~Vs--~-hGGr~~d~~~~t~~~L~~i~~a~~-~~~~vi~dGGIr~g~D-i~KALaLGA~~V 326 (381)
T PRK11197 253 ILDPEDARDAV-RFGADGIVVS--N-HGGRQLDGVLSSARALPAIADAVK-GDITILADSGIRNGLD-VVRMIALGADTV 326 (381)
T ss_pred cCCHHHHHHHH-hCCCCEEEEC--C-CCCCCCCCcccHHHHHHHHHHHhc-CCCeEEeeCCcCcHHH-HHHHHHcCcCce
Confidence 46888888855 6899999887 3 765322111112577888887763 2599999998876655 899999999999
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
-+++.+.++.... -.+-.....+.+++.++..|.++|+..
T Consensus 327 ~iGr~~l~~la~~-------G~~gv~~~l~~l~~El~~~m~l~G~~~ 366 (381)
T PRK11197 327 LLGRAFVYALAAA-------GQAGVANLLDLIEKEMRVAMTLTGAKS 366 (381)
T ss_pred eEhHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999998877431 122345567788888889999998753
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.74 Score=47.75 Aligned_cols=125 Identities=21% Similarity=0.280 Sum_probs=84.4
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhh
Q 029540 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~T 77 (192)
+|.++|.+.+- ||+ +..-+|+ +..++.++..|..+|+.++..|...|... ...+++-..++ +++.
T Consensus 635 ~a~~~Gid~~rifd~--lnd~~~~---~~~i~~vk~~g~~~~~~i~ytg~~~d~~~------~~~~~~~~~~~a~~l~~~ 703 (1146)
T PRK12999 635 EAAAAGIDVFRIFDS--LNWVENM---RVAIDAVRETGKIAEAAICYTGDILDPAR------AKYDLDYYVDLAKELEKA 703 (1146)
T ss_pred HHHHcCCCEEEEecc--CChHHHH---HHHHHHHHHcCCeEEEEEEEEecCCCCCC------CCCCHHHHHHHHHHHHHc
Confidence 57788887775 553 2223554 55566777778899999998876554321 12456544444 4567
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|+++ -.=|.. .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 704 Ga~~i~ik--Dt~G~l---~P~~~~~lv~~lk~~~---~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 704 GAHILAIK--DMAGLL---KPAAAYELVSALKEEV---DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred CCCEEEEC--CccCCC---CHHHHHHHHHHHHHHc---CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 99988875 222332 2544567778888777 57877766 6788899999999999998865
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.4 Score=42.87 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH----HHHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcCCe
Q 029540 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL----DLLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERGVR 141 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~----~~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~Gi~ 141 (192)
++++.+-++.-+.|++++-++..+-.-.+. ..=+| +.|+.|++.+ ++|+++.. |.|.+.+..+++.+.|+.
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~-g~~~f~~~le~i~~i~~~~---~vPVivK~~g~g~~~~~a~~L~~aGvd 205 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPE-GDRNFKGWLEKIAEICSQL---SVPVIVKEVGFGISKEVAKLLADAGVS 205 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCC-CCcCHHHHHHHHHHHHHhc---CCCEEEEecCCCCCHHHHHHHHHcCCC
Confidence 777888888888999999886555332221 22357 5666777666 69999984 568999999999999999
Q ss_pred Eeecch
Q 029540 142 KFNVNT 147 (192)
Q Consensus 142 KINi~T 147 (192)
=|.++.
T Consensus 206 ~I~Vsg 211 (333)
T TIGR02151 206 AIDVAG 211 (333)
T ss_pred EEEECC
Confidence 988854
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.4 Score=38.50 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=83.0
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029540 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
+|+++|-+-|.+ =||. .-.++++...++++-||++|++|=+.. ..|.. ... + ..-..-|.+-..+-|
T Consensus 102 eAvrlGAdAV~~~v~~Gs~-~E~~~l~~l~~v~~ea~~~G~Plla~~-prG~~---~~~-~----~~~ia~aaRiaaELG 171 (264)
T PRK08227 102 DAVRLNACAVAAQVFIGSE-YEHQSIKNIIQLVDAGLRYGMPVMAVT-AVGKD---MVR-D----ARYFSLATRIAAEMG 171 (264)
T ss_pred HHHHCCCCEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCcEEEEe-cCCCC---cCc-h----HHHHHHHHHHHHHHc
Confidence 688999876553 3443 447899999999999999999988732 22211 000 0 002234555556789
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH----HHHHHhcCCeEeecchHHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL----IKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~----~~~~i~~Gi~KINi~T~l~ 150 (192)
.|.+=+. |+ . +.++++-+.. ++|+|+=||+-.++++ ++.+++.|.+=|-++-.+.
T Consensus 172 ADiVK~~-------y~----~---~~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 172 AQIIKTY-------YV----E---EGFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred CCEEecC-------CC----H---HHHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 9988764 43 1 5567776665 7999999999998765 4557888988888776553
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.79 E-value=1 Score=42.30 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=62.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCc--CCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGN--VHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt--~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
-.++++|+..+ +.|+|++-|++|. .|+.- ..+...-+++.|.++++..+..++|+..-||--.|.| +.||+.+|.
T Consensus 277 v~t~e~a~~l~-~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~d-i~kAla~GA 354 (486)
T PRK05567 277 VATAEAARALI-EAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGD-IAKALAAGA 354 (486)
T ss_pred cCCHHHHHHHH-HcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHH-HHHHHHhCC
Confidence 35677888755 7899999987764 33221 1112223788888888776545799999999888755 999999999
Q ss_pred eEeecchHHH
Q 029540 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=+=++|.+.
T Consensus 355 ~~v~~G~~~a 364 (486)
T PRK05567 355 SAVMLGSMLA 364 (486)
T ss_pred CEEEECcccc
Confidence 9999999884
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.5 Score=38.72 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|+..+ +.|||.+-||. ||.=......-.++.|.+|++.++. .+|+.+=||--.+.| +.|++.+|..-+=
T Consensus 237 ~~~eda~~a~-~~Gvd~I~VS~---HGGrq~~~~~a~~~~L~ei~~av~~-~i~vi~dGGIr~g~D-v~KaLalGAd~V~ 310 (367)
T TIGR02708 237 QCPEDADRAL-KAGASGIWVTN---HGGRQLDGGPAAFDSLQEVAEAVDK-RVPIVFDSGVRRGQH-VFKALASGADLVA 310 (367)
T ss_pred CCHHHHHHHH-HcCcCEEEECC---cCccCCCCCCcHHHHHHHHHHHhCC-CCcEEeeCCcCCHHH-HHHHHHcCCCEEE
Confidence 3588888865 68999888874 6542111122368899999988732 499999998776655 7788889999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
++-.+.++.... . .+-.....+.+++.++..|.++|+..
T Consensus 311 igR~~l~~la~~----G---~~gv~~~l~~l~~El~~~M~l~G~~~ 349 (367)
T TIGR02708 311 LGRPVIYGLALG----G---SQGARQVFEYLNKELKRVMQLTGTQT 349 (367)
T ss_pred EcHHHHHHHHhc----C---HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999988775421 0 12344566778888899999999753
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.7 Score=38.07 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=78.3
Q ss_pred hhhhcCCCEeE---eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH---HHHHHhh
Q 029540 2 EAIVLGFDSLM---VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN---QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM---~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe---ea~~Fv~ 75 (192)
+|+++|-+-|- +=||..+ .|.|+.-.++++.||.+|.++=++.=-.|..-.+ + .-.||+ .|.+--.
T Consensus 105 ~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~------~-~~~d~~~v~~aaRlaa 176 (265)
T COG1830 105 DAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKD------E-YHRDADLVGYAARLAA 176 (265)
T ss_pred HHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccc------c-ccccHHHHHHHHHHHH
Confidence 57777766554 3355444 8899999999999999999998875444322111 0 123443 4556677
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCI 136 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i 136 (192)
+.|.|.+=+- |++ |.++.+++-+.+ ++|+|+=||+-. +++++.+.+
T Consensus 177 elGADIiK~~-------ytg-----~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~ 223 (265)
T COG1830 177 ELGADIIKTK-------YTG-----DPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMV 223 (265)
T ss_pred HhcCCeEeec-------CCC-----ChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHH
Confidence 8999998875 765 347777777766 799999999999 777766643
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.43 Score=40.42 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..++.++.|+|.|-+.==+ +. . ....+++.+++|.+.+ .+|+-+=||-.. .|++++++..|+.|+-
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd--~~-~--~~~~n~~~i~~i~~~~---~~~v~vgGGir~-~edv~~~l~~Ga~~vi 105 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLD--AI-M--GRGDNDEAIRELAAAW---PLGLWVDGGIRS-LENAQEWLKRGASRVI 105 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCc--cc-c--CCCccHHHHHHHHHhC---CCCEEEecCcCC-HHHHHHHHHcCCCeEE
Confidence 489988888888899999876211 11 1 1345789999998877 699888775443 4889999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|...
T Consensus 106 igt~~~ 111 (233)
T cd04723 106 VGTETL 111 (233)
T ss_pred Ecceec
Confidence 999864
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.56 Score=44.85 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=61.9
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcC--CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-H---------H
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNV--HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-A---------E 130 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~--HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~---------e 130 (192)
..-||-+..++..+.|+|.|.+===+. -|.. .-..+++.+++|.+.+ .+||-.=||--.- | |
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~---~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e 338 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDFPL---GDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLE 338 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcc---cchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHH
Confidence 457999988888899999988631111 1111 1223588999998887 6999999976553 2 8
Q ss_pred HHHHHHhcCCeEeecchHHHH
Q 029540 131 LIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~ 151 (192)
++++..+.|+.||-|+|....
T Consensus 339 ~~~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 339 VASEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHHHcCCCEEEEChHHHh
Confidence 899999999999999997643
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.7 Score=35.04 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=85.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCcccc---------c
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~~~---------~ 60 (192)
++++.|-+.|-+---.++-++-.+..+++.++|+.+++.+=- ++|. ++. .+...... .
T Consensus 20 ~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~-~~~~~~~~r~~~~~~~~i 98 (180)
T PF02581_consen 20 AALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQ-SDLPPAEARKLLGPDKII 98 (180)
T ss_dssp HHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBT-TSSSHHHHHHHHTTTSEE
T ss_pred HHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecc-cccchHHhhhhcccceEE
Confidence 578899999999999999999999999999999988744321 2222 222 11110000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...--+++|+++ ..+.|+|.+.++ .+.-- -+++.+.+.++.|+++.+.. ++|++-=| |+..+++.++.++|
T Consensus 99 g~S~h~~~e~~~-a~~~g~dYv~~g--pvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlG--GI~~~~i~~l~~~G 170 (180)
T PF02581_consen 99 GASCHSLEEARE-AEELGADYVFLG--PVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALG--GITPENIPELREAG 170 (180)
T ss_dssp EEEESSHHHHHH-HHHCTTSEEEEE--TSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEES--S--TTTHHHHHHTT
T ss_pred EeecCcHHHHHH-hhhcCCCEEEEC--CccCCCCCccccccCHHHHHHHHHhC---CCCEEEEc--CCCHHHHHHHHHcC
Confidence 112346777665 557899998854 44211 12223668899999998888 69999999 55678899999998
Q ss_pred CeEee
Q 029540 140 VRKFN 144 (192)
Q Consensus 140 i~KIN 144 (192)
..-+=
T Consensus 171 a~gvA 175 (180)
T PF02581_consen 171 ADGVA 175 (180)
T ss_dssp -SEEE
T ss_pred CCEEE
Confidence 76553
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.7 Score=40.97 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=79.7
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++|-+.|-+|.++ .-.+ .+.+.++..|+. ++.|=+ |.+ .+++.++.. .+.|+|+
T Consensus 234 v~aGVd~i~~D~a~-g~~~---~~~~~i~~i~~~~~~~~vi~--g~~----------------~t~~~~~~l-~~~G~d~ 290 (475)
T TIGR01303 234 LDAGVDVLVIDTAH-GHQV---KMISAIKAVRALDLGVPIVA--GNV----------------VSAEGVRDL-LEAGANI 290 (475)
T ss_pred HHhCCCEEEEeCCC-CCcH---HHHHHHHHHHHHCCCCeEEE--ecc----------------CCHHHHHHH-HHhCCCE
Confidence 56899999999999 5554 445666666654 455444 322 455666664 4789999
Q ss_pred EEEecC-----cCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIG-----NVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiG-----t~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|.+| |.. .|.+ +.|. +.-+-+..+..+..++|++-.||--.|.+ +.||+.+|..=+=+++.|.
T Consensus 291 i~vg~g~Gs~~ttr-~~~~~g~~~--~~a~~~~~~~~~~~~~~viadGgi~~~~d-i~kala~GA~~vm~g~~~a 361 (475)
T TIGR01303 291 IKVGVGPGAMCTTR-MMTGVGRPQ--FSAVLECAAEARKLGGHVWADGGVRHPRD-VALALAAGASNVMVGSWFA 361 (475)
T ss_pred EEECCcCCccccCc-cccCCCCch--HHHHHHHHHHHHHcCCcEEEeCCCCCHHH-HHHHHHcCCCEEeechhhc
Confidence 999998 222 2332 2243 22222332222223699999999988855 9999999999999988874
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.5 Score=39.84 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=97.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEE--------Eecc----ccccCCCCCcc---------ccc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVE--------AELG----RLSGTEDGLTV---------EDY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VE--------aElG----~i~g~e~~~~~---------~~~ 60 (192)
++++.|.+.|=+---.+|..+-+...+++.++|+.+|+.+= .++| |+|. .|-... .--
T Consensus 165 ~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aDGVHLgq-~dl~~~~aR~llg~~~iI 243 (347)
T PRK02615 165 AALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDADGVHLGQ-EDLPLAVARQLLGPEKII 243 (347)
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEEeCh-hhcCHHHHHHhcCCCCEE
Confidence 57899999999999999999999999999999998875432 1122 2221 111000 000
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...-.+++++.+= .+.|+|.+.+ |.+.--- +++.+.+.++.++.+.+.+ ++|++-=| |+..+++.++.+.|
T Consensus 244 G~S~Hs~~e~~~A-~~~GaDYI~l--GPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiG--GI~~~ni~~l~~~G 315 (347)
T PRK02615 244 GRSTTNPEEMAKA-IAEGADYIGV--GPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIG--GIDKSNIPEVLQAG 315 (347)
T ss_pred EEecCCHHHHHHH-HHcCCCEEEE--CCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEC--CCCHHHHHHHHHcC
Confidence 1123568887764 3569999765 4443211 1223457889999998876 69999999 56789999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
..-|=+.+.+.
T Consensus 316 a~gVAvisaI~ 326 (347)
T PRK02615 316 AKRVAVVRAIM 326 (347)
T ss_pred CcEEEEeHHHh
Confidence 99999888875
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.7 Score=39.16 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=76.5
Q ss_pred hhcCC--CEeEeeCCCCCHHHHHHHHHHHHHHHHh-C-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 4 IVLGF--DSLMVDGSHLPFKDNISHTKYISFLAHS-K-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 4 i~~GF--tSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++|. +-|-+|.++ +.-+++. ++++.-++ + ++.|=+ | .-+++++|+. +.+.|+
T Consensus 106 v~ag~~~d~i~iD~a~-gh~~~~~---e~I~~ir~~~p~~~vi~--g----------------~V~t~e~a~~-l~~aGa 162 (326)
T PRK05458 106 AAEGLTPEYITIDIAH-GHSDSVI---NMIQHIKKHLPETFVIA--G----------------NVGTPEAVRE-LENAGA 162 (326)
T ss_pred HhcCCCCCEEEEECCC-CchHHHH---HHHHHHHhhCCCCeEEE--E----------------ecCCHHHHHH-HHHcCc
Confidence 56655 889999998 4333333 22333232 2 233221 1 1347788876 557999
Q ss_pred cEEEEecCcCCCCCC----C-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNVHGKYP----S-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~----~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++.|++|--.-... + ..|...+..+.++.+.. ++|+.--||--.|.| +.||+.+|..-+=+++.+.
T Consensus 163 d~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI~~~~D-i~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 163 DATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGD-IAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred CEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc---CCCEEEeCCCCCHHH-HHHHHHhCCCEEEechhhc
Confidence 998877543311011 1 12444455588888776 699999999887765 8899999999999998875
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.3 Score=42.01 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=82.1
Q ss_pred hcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029540 5 VLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 5 ~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
++|+.-|.+-.|.- +.+||+...++.+++|+.+|..|+ + +.|| ...|+|+.+.+++
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-----f-~~ed--------~~r~d~~~l~~~~ 155 (513)
T PRK00915 90 PAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-----F-SAED--------ATRTDLDFLCRVV 155 (513)
T ss_pred cCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-----E-EeCC--------CCCCCHHHHHHHH
Confidence 56776666554443 568999999999999999998774 2 2233 2468999888886
Q ss_pred hh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 75 DE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 75 ~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+. .|+|.+-++ -.=|.. .|.-=.++++.+++.++. .++||-+|+ ..|+.-..--.|+..|+..|+.
T Consensus 156 ~~~~~~Ga~~i~l~--DTvG~~---~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~ 227 (513)
T PRK00915 156 EAAIDAGATTINIP--DTVGYT---TPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVEC 227 (513)
T ss_pred HHHHHcCCCEEEEc--cCCCCC---CHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEE
Confidence 54 688876543 222222 243345566777766531 127888865 5677778888899999988753
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.7 Score=38.85 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=73.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCC--------CCC-----CCCCH-----HHHHHHHhhhccCCccEEeecCCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYP--------SSG-----PNLKL-----DLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--------~~~-----p~ld~-----~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
++++.|+. +++.|+|++-|+ | ||... ... ...++ +.|.++++. ..++|+..=||--
T Consensus 191 ~~~~~a~~-L~~aGvd~I~Vs-g--~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~ 264 (333)
T TIGR02151 191 ISKEVAKL-LADAGVSAIDVA-G--AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLR 264 (333)
T ss_pred CCHHHHHH-HHHcCCCEEEEC-C--CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCC
Confidence 46777766 668999999997 3 33211 000 00222 334444441 1269999988766
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.+ +++.+++.+|..=|.+++.+..+... .+ .+.+....+.+.+.++..|.+.|+.
T Consensus 265 ~~-~di~kaLalGAd~V~igr~~L~~~~~------~g-~~~v~~~i~~~~~eL~~~m~~~G~~ 319 (333)
T TIGR02151 265 TG-LDVAKAIALGADAVGMARPFLKAALD------EG-EEAVIEEIELIIEELKVAMFLTGAK 319 (333)
T ss_pred CH-HHHHHHHHhCCCeehhhHHHHHHHHh------cC-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55 55999999999999999998877642 11 2344556677888889999998875
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.2 Score=36.79 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCc
Q 029540 38 GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGV 117 (192)
Q Consensus 38 gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~i 117 (192)
+++|=+|+=.-...... -..+.+|.+..+..++-|.|+|.|- +-.+.+.+ .++.++.|++.+ ++
T Consensus 10 ~~~vIae~k~~sp~~~~------~~~~~~~~~~A~~~~~~GA~~l~v~--~~~~~~~g-----~~~~~~~i~~~v---~i 73 (217)
T cd00331 10 GLGVIAEVKRASPSKGL------IREDFDPVEIAKAYEKAGAAAISVL--TEPKYFQG-----SLEDLRAVREAV---SL 73 (217)
T ss_pred CceEEEEecCCCCCCCc------CCCCCCHHHHHHHHHHcCCCEEEEE--eCccccCC-----CHHHHHHHHHhc---CC
Confidence 47777777665322111 1235688887777888999999654 33333332 457788888887 69
Q ss_pred cEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 118 LLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 118 PLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
|+++.| -.+++++++.+.+.|+.-|.+++.
T Consensus 74 Pi~~~~-~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 74 PVLRKD-FIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred CEEECC-eecCHHHHHHHHHcCCCEEEEeec
Confidence 999754 567777999999999999997653
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.54 Score=40.90 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCH-HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDV-NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~p-eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.|| .+..+..++.|.++|=+- -. + +. |++++++|.+.+ ++|+..=||-- .|++++.++.|+.|+
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvV------DL-g--~~-n~~~i~~i~~~~---~~~v~vGGGIr--~e~v~~~l~aGa~rV 101 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVI------ML-G--PN-NDDAAKEALHAY---PGGLQVGGGIN--DTNAQEWLDEGASHV 101 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE------EC-C--CC-cHHHHHHHHHhC---CCCEEEeCCcC--HHHHHHHHHcCCCEE
Confidence 356 665555556776655432 00 2 33 999999998887 69999999765 499999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|.+.
T Consensus 102 vIGS~av 108 (253)
T TIGR02129 102 IVTSWLF 108 (253)
T ss_pred EECcHHH
Confidence 9999764
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=93.13 E-value=3.1 Score=36.68 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=86.3
Q ss_pred hhhhcCCCEeEeeCCCC-----------CHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029540 2 EAIVLGFDSLMVDGSHL-----------PFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l-----------~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
++.++||+-|=+-.+.- .+..|.+...++++..++ .+++|-.=+- + |.++ ...+..+
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir-~-g~~~---------~~~~~~~ 151 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR-I-GWDD---------AHINAVE 151 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE-c-ccCC---------CcchHHH
Confidence 45567888886654421 145677888888887764 3444433221 1 1111 0123445
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEeecchH
Q 029540 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKFNVNTE 148 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KINi~T~ 148 (192)
..+.+++.|+|.|.+.-.+..+.|++ ..+++.+++|++.+ ++|++.=||-..+++ +.+++ ..|+.=|-+++.
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~~i~~i~~~~---~ipvi~nGgI~~~~d-a~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSG---EANWDIIARVKQAV---RIPVIGNGDIFSPED-AKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCC---chhHHHHHHHHHcC---CCcEEEeCCCCCHHH-HHHHHHhhCCCEEEEChh
Confidence 55557889999998866666666653 24789999999888 699999888876655 77777 578888888877
Q ss_pred HH
Q 029540 149 VR 150 (192)
Q Consensus 149 l~ 150 (192)
+.
T Consensus 225 ~l 226 (319)
T TIGR00737 225 AL 226 (319)
T ss_pred hh
Confidence 64
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.47 Score=40.35 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhh-hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDE-TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||.+..++..+ .|+|.|-|.= .=|.- . .-..+++.+++|.+.+ .+|+-+=||-. +.|++++.+..|+.|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivD--Ld~a~-~-~~~~n~~~I~~i~~~~---~~pi~vGGGIr-s~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVD--LIGAK-A-QHAREFDYIKSLRRLT---TKDIEVGGGIR-TKSQIMDYFAAGINYC 102 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEE--Ccccc-c-CCcchHHHHHHHHhhc---CCeEEEcCCcC-CHHHHHHHHHCCCCEE
Confidence 488665555555 7999888751 11111 1 2346899999999877 69988888766 4567999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|...
T Consensus 103 vigt~a~ 109 (234)
T PRK13587 103 IVGTKGI 109 (234)
T ss_pred EECchHh
Confidence 9999864
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.8 Score=38.20 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=75.1
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH---HHHHHhh
Q 029540 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN---QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe---ea~~Fv~ 75 (192)
+|+++|.+-|.+ =||. ...++++.-.++++-||++|++|=+..=--|.. .. ...+.-|+|+ -|.+-..
T Consensus 154 dAlrLGAdAV~~tvy~Gs~-~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~---i~--~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 154 DALRLGAVAVGATIYFGSE-ESRRQIEEISEAFEEAHELGLATVLWSYLRNSA---FK--KDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred HHHHCCCCEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcc---cC--CcccccccHHHHHHHHHHHH
Confidence 689999876653 3454 336789999999999999999998853222211 11 1111235554 3445555
Q ss_pred hhCCcEEEEecCcCCCCCCC-------------CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 76 ETDIDALAVCIGNVHGKYPS-------------SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~-------------~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+-|.|.+=+-.=+.++.++. -.-.=..++++.+-+.+-.-++|+|+=||+-.+++++-+.
T Consensus 228 ELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 228 TIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred HHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence 77999998875333332211 0001123344444443301159999999999888665443
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.09 E-value=3 Score=38.24 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=80.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|++ +.+.|||.+-||- ||.-..+...--++.|-+|++.+.. .+|+.+.||--.+-| +-||+.+|-.=+-
T Consensus 232 ~~~~dA~~-a~~~Gvd~I~Vsn---hGGrqld~~p~t~~~L~ei~~~~~~-~~~Vi~dGGIr~G~D-i~KALALGAdaV~ 305 (366)
T PLN02979 232 LTGEDARI-AIQAGAAGIIVSN---HGARQLDYVPATISALEEVVKATQG-RIPVFLDGGVRRGTD-VFKALALGASGIF 305 (366)
T ss_pred CCHHHHHH-HHhcCCCEEEECC---CCcCCCCCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHH-HHHHHHcCCCEEE
Confidence 47888887 4478999887763 4432211111136788888877632 599999999877665 8899999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+.++....- .+-.....+.+++.++..|.++|+.
T Consensus 306 iGrp~L~~la~~G-------~~Gv~~~l~~l~~El~~~m~l~G~~ 343 (366)
T PLN02979 306 IGRPVVFSLAAEG-------EAGVRKVLQMLRDEFELTMALSGCR 343 (366)
T ss_pred EcHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987765321 1224566788888888899998864
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=3.7 Score=37.07 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=72.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCC--------CC----------CCCCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKY--------PS----------SGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y--------~~----------~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
+++++|+. +.+.|||.+-|+- ||.. .. ++..--++.|.++++.. .++|+..=||-.
T Consensus 198 ~s~~~a~~-l~~~Gvd~I~Vsg---~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~--~~ipvia~GGI~ 271 (352)
T PRK05437 198 ISKETAKR-LADAGVKAIDVAG---AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL--PDLPIIASGGIR 271 (352)
T ss_pred CcHHHHHH-HHHcCCCEEEECC---CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc--CCCeEEEECCCC
Confidence 55777765 5578999999853 3421 10 00000134566666652 169999988877
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.+ .++.+++.+|..=+.++|.+..+.... . ..-+....+.+.+.++..|...|+.
T Consensus 272 ~~-~dv~k~l~~GAd~v~ig~~~l~~~~~~------g-~~~v~~~i~~~~~eL~~~m~~~G~~ 326 (352)
T PRK05437 272 NG-LDIAKALALGADAVGMAGPFLKAALEG------G-EEAVIELIEQWIEELKIAMFLTGAK 326 (352)
T ss_pred CH-HHHHHHHHcCCCEEEEhHHHHHHHHhc------c-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66 458999999999999999998775321 0 1223344566778888888888864
|
|
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.72 Score=41.16 Aligned_cols=125 Identities=21% Similarity=0.249 Sum_probs=75.0
Q ss_pred ccCCCHHHHHHHhhh--------------h-CCcEEEEe--cCcCCCCCCCCCCCCC---HHHHHHHHhhhccC-CccEE
Q 029540 62 AKLTDVNQAEEFIDE--------------T-DIDALAVC--IGNVHGKYPSSGPNLK---LDLLKDLHALSSKK-GVLLV 120 (192)
Q Consensus 62 ~~~T~peea~~Fv~~--------------T-gvD~LAva--iGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~-~iPLV 120 (192)
.++++||.+.++++. . |+|.+-+. .|+.=|.+-+ ....+ +..+++|-+.++.. ++|.+
T Consensus 138 ~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LS-pe~f~efv~P~~krIi~~ik~~~g~pii 216 (321)
T cd03309 138 ALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFIS-PATFREFILPRMQRIFDFLRSNTSALIV 216 (321)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccC-HHHHHHHHHHHHHHHHHHHHhccCCceE
Confidence 357899988887752 3 88877652 1222111211 01111 22335555555433 57999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHH---HHHHHHHhcC-----CCCChHHHHHHH-HHHHHHHHHHHHHHhCCC
Q 029540 121 LHGASGLSAELIKGCIERGVRKFNVNTEV---RKAYMDSLSR-----PKSDLIHLMASA-KEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l---~~a~~~~~~~-----~~~~~~~~~~~~-~~~~~~~v~~~i~~~gs~ 189 (192)
+|..- .....+...+++|+..+|++... ..+ .+.+.. .+.|+..++... .+.+++.+++.++.+|..
T Consensus 217 lH~cG-~~~~~l~~~~e~g~dvl~~d~~~~dl~ea-k~~~g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~~ 292 (321)
T cd03309 217 HHSCG-AAASLVPSMAEMGVDSWNVVMTANNTAEL-RRLLGDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAPI 292 (321)
T ss_pred EEeCC-CcHHHHHHHHHcCCCEEEecCCCCCHHHH-HHHhCCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 99664 44557888899999999986543 222 222221 244776555444 588999999999998863
|
Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.88 Score=38.36 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++.+..++++.-|+-.|--.|.+. |. ....|+++++++.+.+ ++|+..-||-+.+++ ++++.+.|+.++=
T Consensus 141 ~~~~~~~~~~~~~g~~ii~tdI~~d-Gt----~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed-~~~l~~~Ga~~vi 211 (221)
T TIGR00734 141 ESLEEVRDFLNSFDYGLIVLDIHSV-GT----MKGPNLELLTKTLELS---EHPVMLGGGISGVED-LELLKEMGVSAVL 211 (221)
T ss_pred ccHHHHHHHHHhcCCEEEEEECCcc-cc----CCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHH-HHHHHHCCCCEEE
Confidence 4666666666655554444455444 22 2345899999999887 699999999997766 6778889999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 212 vgsal~ 217 (221)
T TIGR00734 212 VATAVH 217 (221)
T ss_pred EhHHhh
Confidence 998874
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.74 Score=39.33 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..++.++.|+|.|-+.= ..-... .-..+++.+++|++.+ ++|+.+=||-.. .+++++++..|+.++-
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~D-l~~~~~---~~~~n~~~i~~i~~~~---~~pv~~~GGi~s-~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLD-ITASSE---GRTTMIDVVERTAETV---FIPLTVGGGIKS-IEDVDKLLRAGADKVS 101 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEc-CCcccc---cChhhHHHHHHHHHhc---CCCEEEECCCCC-HHHHHHHHHcCCCEEE
Confidence 4998888888889999988751 111111 2346899999999888 699999997664 4669999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 102 vgt~~~~ 108 (254)
T TIGR00735 102 INTAAVK 108 (254)
T ss_pred EChhHhh
Confidence 9998743
|
|
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.29 Score=38.36 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=37.2
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCC--CCCC----CCCCCHHHHHHHHhhhcc
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGK--YPSS----GPNLKLDLLKDLHALSSK 114 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~----~p~ld~~~L~~I~~~~~~ 114 (192)
||++..+.+++++||++-+-.|.-||. |+.+ .|.|..|+|.++-++..+
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~ 55 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHE 55 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHH
Confidence 789999999999999999988888875 4432 467777777766555443
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.4 Score=37.84 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=80.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|++-+ +.|||.+-||- ||.-..+...--++.|.+|.+.+.. .+|+.+=||--.+-| +-||+.+|..=+-
T Consensus 233 ~~~~dA~~a~-~~Gvd~I~Vsn---hGGrqld~~~~t~~~L~ei~~av~~-~~~vi~dGGIr~G~D-v~KALALGA~aV~ 306 (367)
T PLN02493 233 LTGEDARIAI-QAGAAGIIVSN---HGARQLDYVPATISALEEVVKATQG-RIPVFLDGGVRRGTD-VFKALALGASGIF 306 (367)
T ss_pred CCHHHHHHHH-HcCCCEEEECC---CCCCCCCCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHH-HHHHHHcCCCEEE
Confidence 4688888744 78999887763 4443211111137788888877632 599999998876655 8899999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+.++....- .+-.....+.+++.++..|.++|+.
T Consensus 307 iGr~~l~~l~~~G-------~~gv~~~l~~l~~el~~~m~l~G~~ 344 (367)
T PLN02493 307 IGRPVVFSLAAEG-------EAGVRKVLQMLRDEFELTMALSGCR 344 (367)
T ss_pred EcHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987765321 1224566788888888899998864
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.85 Score=38.96 Aligned_cols=137 Identities=10% Similarity=0.084 Sum_probs=81.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec--cccccCCC-CCccccc-cccCCCHHHHHHHhhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL--GRLSGTED-GLTVEDY-EAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl--G~i~g~e~-~~~~~~~-~~~~T~peea~~Fv~~T 77 (192)
+++.+|.+.|++-.+.+ +|....+++.+....--+.+--.+ |.+.+... .+....+ +..-.++.+..+.+++.
T Consensus 91 ~~~~~Ga~~vivgt~~~---~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~ 167 (254)
T TIGR00735 91 KLLRAGADKVSINTAAV---KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL 167 (254)
T ss_pred HHHHcCCCEEEEChhHh---hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc
Confidence 46778999998854443 355555555444311113333322 11100000 0000000 11223455666666789
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
|+|.+-++-=+..| + .+..|++.++++.+.+ ++|+...||-..+++ +.++.+.| +.=|-++|.+
T Consensus 168 G~~~iivt~i~~~g-~---~~g~~~~~~~~i~~~~---~ipvia~GGi~s~~d-i~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 168 GAGEILLTSMDKDG-T---KSGYDLELTKAVSEAV---KIPVIASGGAGKPEH-FYEAFTKGKADAALAASVF 232 (254)
T ss_pred CCCEEEEeCcCccc-C---CCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHcCCcceeeEhHHH
Confidence 99988775333323 2 2456899999999887 699999999886655 77888877 9888888876
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.8 Score=37.24 Aligned_cols=113 Identities=9% Similarity=0.114 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCC
Q 029540 20 FKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGP 98 (192)
Q Consensus 20 ~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p 98 (192)
+-.|-..++++++-.+. .+++|-.=+- + |..+ ...+..+..+.+++.|+|+|.+.-+|.-+.|.+
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR-~-G~~~---------~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G--- 179 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIR-T-GWAP---------EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG--- 179 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEE-c-cccC---------CcchHHHHHHHHHHhCCCEEEEecCccccccCC---
Confidence 45566677777766653 3444433332 1 1110 012334444556789999998877776666754
Q ss_pred CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHHH
Q 029540 99 NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEVR 150 (192)
Q Consensus 99 ~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l~ 150 (192)
..|++.+++|++.+ ++|++-=||-..+ ++++++++ .|+.=|=+++.+.
T Consensus 180 ~a~~~~i~~ik~~~---~iPVI~nGgI~s~-~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 180 EAEYDSIRAVKQKV---SIPVIANGDITDP-LKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred CcChHHHHHHHHhc---CCcEEEeCCCCCH-HHHHHHHhccCCCEEEEChHhh
Confidence 24889999999988 6999988877655 55788886 6898888887773
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.73 E-value=3.1 Score=33.66 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=69.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|.++|.+.|-+-+... + .+.++++.++++|+.+ -++ + ...|..+..+++.. ++|.
T Consensus 74 ~~~~~gadgv~vh~~~~---~---~~~~~~~~~~~~g~~~--~~~-~-------------~~~t~~e~~~~~~~--~~d~ 129 (210)
T TIGR01163 74 DFAEAGADIITVHPEAS---E---HIHRLLQLIKDLGAKA--GIV-L-------------NPATPLEFLEYVLP--DVDL 129 (210)
T ss_pred HHHHcCCCEEEEccCCc---h---hHHHHHHHHHHcCCcE--EEE-E-------------CCCCCHHHHHHHHh--hCCE
Confidence 35567777755544321 1 2245556666666543 111 1 02355556666543 4687
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+. +++.+....+. .+...++.++++++.+++ .++|+++=| |+..++++++++.|+.=+-++|.+.
T Consensus 130 i~--~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G--GI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 130 VL--LMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG--GVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred EE--EEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC--CcCHHHHHHHHHcCCCEEEEChHHh
Confidence 54 45554322221 122233455556555432 137888877 7788999999999999999998884
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.7 Score=34.61 Aligned_cols=89 Identities=15% Similarity=0.265 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHH
Q 029540 28 KYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKD 107 (192)
Q Consensus 28 k~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~ 107 (192)
.+|+++|+..|+.+ +.| -.+|.|+.+= .+-|+|.+-+ |+. ..+-++.|+.
T Consensus 99 ~~v~~~~~~~~i~~------iPG-------------~~T~~E~~~A-~~~Gad~vkl--------FPa--~~~G~~~ik~ 148 (213)
T PRK06552 99 RETAKICNLYQIPY------LPG-------------CMTVTEIVTA-LEAGSEIVKL--------FPG--STLGPSFIKA 148 (213)
T ss_pred HHHHHHHHHcCCCE------ECC-------------cCCHHHHHHH-HHcCCCEEEE--------CCc--ccCCHHHHHH
Confidence 36777777766543 332 2467787774 4799999996 654 3356788899
Q ss_pred HHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 108 LHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 108 I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++.... ++|++-=| |++.+++...++.|+.=+=+++.+.
T Consensus 149 l~~~~p--~ip~~atG--GI~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 149 IKGPLP--QVNVMVTG--GVNLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HhhhCC--CCEEEEEC--CCCHHHHHHHHHCCCcEEEEchHHh
Confidence 988774 59999888 7888999999999999999999995
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.5 Score=41.07 Aligned_cols=128 Identities=14% Similarity=0.093 Sum_probs=83.2
Q ss_pred hhhhcCCCEeEeeCCCCCHH---H--HHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFK---D--NISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~e---e--Ni~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
.||++|-+.|=+=+..+.+- . +...-++.+++||..|+.|-.=+=.+... + .+....+-.+++.+
T Consensus 18 aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e-~---------el~~~~~~l~~l~~ 87 (443)
T PRK15452 18 YAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN-A---------KLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH-H---------HHHHHHHHHHHHHh
Confidence 58999999999854433210 0 11236788999999998876654444211 0 12222333455668
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC---CHHHHHHHHhcCCeEeecchHHHHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL---SAELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~---~~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
.|||.+-|+ |+..+.-+++.. -.+-+|+++.+ ....++-.-+.|+..+.++.+|...-
T Consensus 88 ~gvDgvIV~---------------d~G~l~~~ke~~----p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~E 148 (443)
T PRK15452 88 MKPDALIMS---------------DPGLIMMVREHF----PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEE 148 (443)
T ss_pred CCCCEEEEc---------------CHHHHHHHHHhC----CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHH
Confidence 899998886 455566666543 24678888765 34566667789999999999996655
Q ss_pred HHHhc
Q 029540 154 MDSLS 158 (192)
Q Consensus 154 ~~~~~ 158 (192)
+..+.
T Consensus 149 I~~i~ 153 (443)
T PRK15452 149 IEEIR 153 (443)
T ss_pred HHHHH
Confidence 55553
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=4.9 Score=34.30 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC--CCCCCHH
Q 029540 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS--GPNLKLD 103 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~--~p~ld~~ 103 (192)
.-+..++.||++|.-+=.||= ..-||+++.+.+++.|+|.+.+ |-.+... +...-++
T Consensus 94 TI~~~i~~A~~~~~~v~iDl~----------------~~~~~~~~~~~l~~~gvd~~~~-----H~g~D~q~~G~~~~~~ 152 (217)
T COG0269 94 TIKKAIKVAKEYGKEVQIDLI----------------GVWDPEQRAKWLKELGVDQVIL-----HRGRDAQAAGKSWGED 152 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEee----------------cCCCHHHHHHHHHHhCCCEEEE-----EecccHhhcCCCccHH
Confidence 346778889999865555531 1357899999999999999876 5444321 1223357
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
.|.++++..+ .++++..=| |+..+++..++..|+.=+=++..+
T Consensus 153 ~l~~ik~~~~-~g~~vAVaG--GI~~~~i~~~~~~~~~ivIvGraI 195 (217)
T COG0269 153 DLEKIKKLSD-LGAKVAVAG--GITPEDIPLFKGIGADIVIVGRAI 195 (217)
T ss_pred HHHHHHHhhc-cCceEEEec--CCCHHHHHHHhcCCCCEEEECchh
Confidence 8888888773 247899999 899999999999998877777665
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.94 Score=40.06 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=72.1
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++|||.--|+.+--++.. .++.+++ + ...||.|. .+++||.+.+ +.|+|.+-+
T Consensus 166 ~d~ilikdNHi~~~g~i~~---av~~~r~~~~~~~~I~VEv-------------------~tleea~eA~-~~GaD~I~L 222 (288)
T PRK07428 166 DDAVMIKDNHIQAAGGIGE---AITRIRQRIPYPLTIEVET-------------------ETLEQVQEAL-EYGADIIML 222 (288)
T ss_pred hheeeecHHHHHHhCCHHH---HHHHHHHhCCCCCEEEEEC-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 5799998888766555333 3333333 2 35566552 3457888877 789998876
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhc--cCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSS--KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~--~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
- +..++.|+++-+..+ ...+||+-=| |+..+.+.+..+.||.-|=+++...
T Consensus 223 D-------------n~~~e~l~~av~~~~~~~~~i~leAsG--GIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 223 D-------------NMPVDLMQQAVQLIRQQNPRVKIEASG--NITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred C-------------CCCHHHHHHHHHHHHhcCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEEchhhh
Confidence 4 334566777665442 2358888888 7889999999999999998887653
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.3 Score=37.04 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=59.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|.++.+..++.|+|.|-+. ...+.-. ....|++.+++|.+.+ ++|+.+=||-. +.++++++.+.|+.+|
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~--dl~~~~~--~~~~n~~~~~~i~~~~---~~pv~~~ggi~-~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVL--DIDASKR--GREPLFELISNLAEEC---FMPLTVGGGIR-SLEDAKKLLSLGADKV 100 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--eCCCccc--CCCCCHHHHHHHHHhC---CCCEEEECCCC-CHHHHHHHHHcCCCEE
Confidence 3599998888899999977764 1222211 2446899999999887 69987755544 4567888999999999
Q ss_pred ecchHHHH
Q 029540 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
-++|.+..
T Consensus 101 ilg~~~l~ 108 (232)
T TIGR03572 101 SINTAALE 108 (232)
T ss_pred EEChhHhc
Confidence 99998753
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.17 Score=45.44 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=60.3
Q ss_pred ccCCCHHH-HHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH---HHHHH
Q 029540 62 AKLTDVNQ-AEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL---IKGCI 136 (192)
Q Consensus 62 ~~~T~pee-a~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~---~~~~i 136 (192)
+.+.||-+ |++-|++-|+|++-+- |+|--- .+...|+=--+.|+++-+++ ++|+++ ||||.|+.+ |.+|.
T Consensus 147 dVmedP~eWArk~Vk~fgadmvTiHlIsTdPk-i~D~p~~EAak~lEdvLqAV---dvPiii-GGSGnpeKDpeVlekaA 221 (403)
T COG2069 147 DVMEDPGEWARKCVKKFGADMVTIHLISTDPK-IKDTPAKEAAKTLEDVLQAV---DVPIII-GGSGNPEKDPEVLEKAA 221 (403)
T ss_pred HHhhCHHHHHHHHHHHhCCceEEEEeecCCcc-ccCCCHHHHHHHHHHHHHhc---CcCEEe-cCCCCCccCHHHHHHHH
Confidence 34667855 8889999999998764 222211 11111223355677777777 699998 899999754 55554
Q ss_pred ------hcCCeEeecchHHHHHHHHHhc
Q 029540 137 ------ERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 137 ------~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
++=.+-+|.+-++....-.+++
T Consensus 222 EvaEGeRclLaSanldlDy~~ia~AA~k 249 (403)
T COG2069 222 EVAEGERCLLASANLDLDYERIAEAALK 249 (403)
T ss_pred HhhcCceEEeeccccccCHHHHHHHHHh
Confidence 3345678888888777766665
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=7 Score=33.86 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=79.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-++|++.+.+ -.||+| ...++++.|+++|+..= .+ -..-|+++..+... +..-++
T Consensus 112 ~~~~aGvdGvii--pDLp~e----e~~~~~~~~~~~gl~~I----~l------------vap~t~~eri~~i~-~~s~gf 168 (258)
T PRK13111 112 DAAEAGVDGLII--PDLPPE----EAEELRAAAKKHGLDLI----FL------------VAPTTTDERLKKIA-SHASGF 168 (258)
T ss_pred HHHHcCCcEEEE--CCCCHH----HHHHHHHHHHHcCCcEE----EE------------eCCCCCHHHHHHHH-HhCCCc
Confidence 578899999998 578986 45588888888875321 11 01224445555544 444455
Q ss_pred EEE-e-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHHHHH
Q 029540 82 LAV-C-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 82 LAv-a-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
+.+ + .|+ =|. ....|.--.+.+++|++.+ ++|+++ |.|+ ..++++++.+. ..=+=|+|.+-+...+
T Consensus 169 IY~vs~~Gv-TG~-~~~~~~~~~~~i~~vk~~~---~~pv~v--GfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 169 VYYVSRAGV-TGA-RSADAADLAELVARLKAHT---DLPVAV--GFGISTPEQAAAIAAV-ADGVIVGSALVKIIEE 237 (258)
T ss_pred EEEEeCCCC-CCc-ccCCCccHHHHHHHHHhcC---CCcEEE--EcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHh
Confidence 543 3 343 122 1112333455788888877 699998 6788 66899998875 7788899998766543
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=6.6 Score=33.33 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=76.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh-CCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET-DID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T-gvD 80 (192)
++.++|.+.|.+=. +|+|- .....++.+.|+++|+.+=-++ ..-|+++..+.+++.. ++=
T Consensus 96 ~~~~~Gadgvii~d--lp~e~-~~~~~~~~~~~~~~Gl~~~~~v----------------~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 96 MARDVGADGVLFPD--LLIDY-PDDLEKYVEIIKNKGLKPVFFT----------------SPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred HHHHcCCCEEEECC--CCCCc-HHHHHHHHHHHHHcCCCEEEEE----------------CCCCCHHHHHHHHHhCCCEE
Confidence 46788888888832 34331 1135578899999887443221 1236677777777653 222
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
.+.+.=|| |. +- +.-=.+.++++++..+ +.|++. |+|+ ..++++++.+.|..=+=++|.+...+
T Consensus 157 ~msv~~~~--g~-~~--~~~~~~~i~~lr~~~~--~~~i~v--~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 157 YYGLRPAT--GV-PL--PVSVERNIKRVRNLVG--NKYLVV--GFGLDSPEDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred EEEeCCCC--CC-Cc--hHHHHHHHHHHHHhcC--CCCEEE--eCCcCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 22333233 32 11 1111234566666653 368775 5578 78999999999999999999997655
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=2.1 Score=40.68 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=80.4
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhh
Q 029540 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DET 77 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~T 77 (192)
+|++.|.+.+- ||+-.-. +|++ ..++.++..|..+++.|....+. ..+|+...+++ .+.
T Consensus 105 ~a~~~Gidi~RIfd~lndv--~nl~---~ai~~vk~ag~~~~~~i~yt~sp------------~~t~e~~~~~a~~l~~~ 167 (499)
T PRK12330 105 KSAENGMDVFRVFDALNDP--RNLE---HAMKAVKKVGKHAQGTICYTVSP------------IHTVEGFVEQAKRLLDM 167 (499)
T ss_pred HHHHcCCCEEEEEecCChH--HHHH---HHHHHHHHhCCeEEEEEEEecCC------------CCCHHHHHHHHHHHHHc
Confidence 57888988874 5554332 5554 55667777888899988776431 12555555544 357
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|.++ -.=|.- .|.-=.++++.|++.+. .++|+-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 168 Gad~I~Ik--DtaGll---~P~~~~~LV~~Lk~~~~-~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 168 GADSICIK--DMAALL---KPQPAYDIVKGIKEACG-EDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred CCCEEEeC--CCccCC---CHHHHHHHHHHHHHhCC-CCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 99988764 332332 25445667778877662 137776665 6899999999999999988754
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=91.80 E-value=6.3 Score=33.66 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=81.7
Q ss_pred hhhhcCCCEeEeeC-------------CCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCH
Q 029540 2 EAIVLGFDSLMVDG-------------SHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~-------------S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
+.+++|...|.+.. ..+|.||-+++.+.+++.+.. -++.|=+=.-.....+ ...
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~------------~~~ 159 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE------------EGL 159 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC------------CCH
Confidence 45678999999833 235899999999998888876 3444444322211000 123
Q ss_pred HHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 68 NQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 68 eea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
++|.+- ..+.|.|++-|- | |. +.+-+++|.+.. +.||++--..+...-.+..+.++|++-+=
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~-----~------~~-~~~~~~~~~~~~---~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~ 224 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVE-----G------LK-DPEEIRAFAEAP---DVPLNVNMTPGGNLLTVAELAELGVRRVS 224 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeC-----C------CC-CHHHHHHHHhcC---CCCEEEEecCCCCCCCHHHHHHCCCeEEE
Confidence 444433 236799998762 1 22 566677776665 79999876544311224444566999999
Q ss_pred cchHHHHHHHHHhc
Q 029540 145 VNTEVRKAYMDSLS 158 (192)
Q Consensus 145 i~T~l~~a~~~~~~ 158 (192)
++..+..+...+++
T Consensus 225 ~~~~~~~~a~~a~~ 238 (243)
T cd00377 225 YGLALLRAAAKAMR 238 (243)
T ss_pred EChHHHHHHHHHHH
Confidence 99988877776654
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.4 Score=45.73 Aligned_cols=125 Identities=20% Similarity=0.266 Sum_probs=82.4
Q ss_pred hhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhC
Q 029540 3 AIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETD 78 (192)
Q Consensus 3 ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~Tg 78 (192)
|.+.|.+.+= ||+ |..-+|+ +..++.+++.|..+|+-|=..|+..|.. ....+++-..++ +.+.|
T Consensus 634 ~~~~GidifrifD~--lN~~~n~---~~~~~~~~~~g~~~~~~i~yt~~~~d~~------~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 634 AAQGGIDIFRVFDS--LNWVENM---RVGMDAVAEAGKVVEAAICYTGDILDPA------RPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred HHHcCCCEEEECcc--CcCHHHH---HHHHHHHHHcCCEEEEEEEEeccCCCcC------CCCCCHHHHHHHHHHHHHcC
Confidence 4555655443 333 3334444 5566777889999999998887544432 123455533333 45689
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+|.|+++ -.=|.- .|.-=.++++.|++.+ ++||-+|. .+|+.-...-+|++.|+.-|...
T Consensus 703 ad~I~ik--Dt~Gll---~P~~~~~Lv~~lk~~~---~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~a 764 (1143)
T TIGR01235 703 AHILGIK--DMAGLL---KPAAAKLLIKALREKT---DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVA 764 (1143)
T ss_pred CCEEEEC--CCcCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEec
Confidence 9988764 333433 2544567778888877 57777665 68999999999999999998874
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.4 Score=37.76 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=58.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..||.+..++....|+|.|=+. ...+.-. .-..|++++++|.+.+ ++|+.+=||-. +.++++++...|+.+|
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~--Dl~~~~~--~~~~n~~~i~~i~~~~---~~pv~~gGGi~-s~~d~~~l~~~G~~~v 100 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVL--DIDASKR--GSEPNYELIENLASEC---FMPLCYGGGIK-TLEQAKKIFSLGVEKV 100 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--ECCCCcC--CCcccHHHHHHHHHhC---CCCEEECCCCC-CHHHHHHHHHCCCCEE
Confidence 4699999999999999887764 1111111 1235899999999887 69987777555 4467999999999999
Q ss_pred ecchHH
Q 029540 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
-++|.+
T Consensus 101 vigs~~ 106 (258)
T PRK01033 101 SINTAA 106 (258)
T ss_pred EEChHH
Confidence 999976
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.1 Score=38.00 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.+|.+..++.++. +|.|=+ +-- =|.-. ....|++++++|.+.+ ++|+-.=||-... |+++++.+.|+.|+
T Consensus 29 ~~dp~~~a~~~~~~-~~~l~i-vDl-dga~~--g~~~n~~~i~~i~~~~---~~pv~~gGGIrs~-edv~~l~~~G~~~v 99 (228)
T PRK04128 29 YGDPVEIALRFSEY-VDKIHV-VDL-DGAFE--GKPKNLDVVKNIIRET---GLKVQVGGGLRTY-ESIKDAYEIGVENV 99 (228)
T ss_pred CCCHHHHHHHHHHh-CCEEEE-EEC-cchhc--CCcchHHHHHHHHhhC---CCCEEEcCCCCCH-HHHHHHHHCCCCEE
Confidence 45998877777666 886665 211 12111 2346899999998877 6999999987754 56999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
-++|...
T Consensus 100 ivGtaa~ 106 (228)
T PRK04128 100 IIGTKAF 106 (228)
T ss_pred EECchhc
Confidence 9999865
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.6 Score=36.37 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=74.5
Q ss_pred hhhhcCCCEeEeeCCCCC-----HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGSHLP-----FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~-----~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
++++.||+.+=+-..+-+ +++.++..+.+.+.+.. ++.+=.+. + ..+ ++++|.+|+++
T Consensus 149 ~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~-~~~l~vDa------N---------~~~-~~~~a~~~~~~ 211 (357)
T cd03316 149 RAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGP-DVDLMVDA------N---------GRW-DLAEAIRLARA 211 (357)
T ss_pred HHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCC-CCEEEEEC------C---------CCC-CHHHHHHHHHH
Confidence 467889999988776655 56667666666554432 22221110 1 023 68999999876
Q ss_pred h---CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 77 T---DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 77 T---gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
. +++++-- + -|.-|++.+++|++.+ ++|+++ |.|=...++++++++.| +.-||+....
T Consensus 212 l~~~~i~~iEq---------P--~~~~~~~~~~~l~~~~---~ipi~~-dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 212 LEEYDLFWFEE---------P--VPPDDLEGLARLRQAT---SVPIAA-GENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred hCccCCCeEcC---------C--CCccCHHHHHHHHHhC---CCCEEe-ccccccHHHHHHHHHhCCCCEEecCccc
Confidence 4 4444321 1 2334789999999987 699887 55666778899999866 5567775443
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.34 E-value=10 Score=35.54 Aligned_cols=143 Identities=14% Similarity=0.061 Sum_probs=98.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCcccc---------c
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~---------~ 60 (192)
+++++|-+.|=+=--.++-++-.+..+++.++|+.+|+.+=- ++| |+| .+|-..... .
T Consensus 225 ~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVHLG-QeDL~~~~aR~ilg~~~iI 303 (437)
T PRK12290 225 RLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVHLG-QEDLEEANLAQLTDAGIRL 303 (437)
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEEcC-hHHcchhhhhhhcCCCCEE
Confidence 688999999999877888888889999999999988876633 333 343 232111000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCC-CCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHH
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPS-SGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELI 132 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~-~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~ 132 (192)
+..--+++|+.+ ..+-|+|.++++ -+.=- -|+ ..|.+-+++|+++.+.++. .++|+|-=| |+..+++
T Consensus 304 GvStHs~eEl~~-A~~~gaDYI~lG--PIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG--GI~~~Ni 378 (437)
T PRK12290 304 GLSTHGYYELLR-IVQIQPSYIALG--HIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG--GIDQSNA 378 (437)
T ss_pred EEecCCHHHHHH-HhhcCCCEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEEC--CcCHHHH
Confidence 111236778766 446799999854 33211 011 1255889999988877631 259999999 8899999
Q ss_pred HHHHhcCCeEeecchHHH
Q 029540 133 KGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 133 ~~~i~~Gi~KINi~T~l~ 150 (192)
..+.+.|+.=|=+-+.+.
T Consensus 379 ~~vl~aGa~GVAVVSAI~ 396 (437)
T PRK12290 379 EQVWQCGVSSLAVVRAIT 396 (437)
T ss_pred HHHHHcCCCEEEEehHhh
Confidence 999999999998887774
|
|
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.59 Score=40.27 Aligned_cols=136 Identities=13% Similarity=0.278 Sum_probs=78.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--C---CeE--E-Eeccccc----cCCCCCccccccccCCCH-
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--G---MLV--E-AELGRLS----GTEDGLTVEDYEAKLTDV- 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--g---v~V--E-aElG~i~----g~e~~~~~~~~~~~~T~p- 67 (192)
++++|+|+..||+ |.=+|.+..+++|+.|+-- | +.- = .-.|... ..++.. ..-.+.-+|
T Consensus 78 ~r~LD~Ga~gIiv-----P~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~---~vi~~IEt~~ 149 (249)
T TIGR03239 78 KRLLDIGFYNFLI-----PFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNI---TVLVQIESQK 149 (249)
T ss_pred HHHhcCCCCEEEe-----cCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhcccc---EEEEEECCHH
Confidence 4789999999986 9999999999999999832 1 110 0 0001000 000000 001123344
Q ss_pred --HHHHHHhhhhCCcEEEEecCcC-----CCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 68 --NQAEEFIDETDIDALAVCIGNV-----HGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 68 --eea~~Fv~~TgvD~LAvaiGt~-----HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
+.+.++++--|||.|- ||.. -|.+.. ..|.+.- .++++-...+..++|.-++.+ +.++.++.++.|
T Consensus 150 av~n~~eI~av~gvd~l~--iG~~DLs~slG~~~~~~~~~v~~-a~~~v~~aa~a~G~~~g~~~~---~~~~~~~~~~~G 223 (249)
T TIGR03239 150 GVDNVDEIAAVDGVDGIF--VGPSDLAAALGHLGNPNHPDVQK-AIRHIFDRAAAHGKPCGILAP---VEADARRYLEWG 223 (249)
T ss_pred HHHhHHHHhCCCCCCEEE--EChHHHHHHcCCCCCCCCHHHHH-HHHHHHHHHHHcCCCEEEcCC---CHHHHHHHHHcC
Confidence 4456666666899665 4431 222211 1133222 223344444445788866654 448999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
++=+.+++|..
T Consensus 224 ~~~~~~~~D~~ 234 (249)
T TIGR03239 224 ATFVAVGSDLG 234 (249)
T ss_pred CCEEEEhHHHH
Confidence 99999999975
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=91.23 E-value=7.2 Score=35.36 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=78.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|++.+ +.|||.+=|| -||...-.+..-=++.|-+|++.++ .++|+-+=||--.+- |+-|++.+|..=+=
T Consensus 234 ~~~~da~~~~-~~G~~~i~vs---~hGGr~~d~~~~~~~~L~~i~~~~~-~~~~i~~dgGir~g~-Dv~kalaLGA~~v~ 307 (356)
T PF01070_consen 234 LSPEDAKRAV-DAGVDGIDVS---NHGGRQLDWGPPTIDALPEIRAAVG-DDIPIIADGGIRRGL-DVAKALALGADAVG 307 (356)
T ss_dssp -SHHHHHHHH-HTT-SEEEEE---SGTGTSSTTS-BHHHHHHHHHHHHT-TSSEEEEESS--SHH-HHHHHHHTT-SEEE
T ss_pred ccHHHHHHHH-hcCCCEEEec---CCCcccCccccccccccHHHHhhhc-CCeeEEEeCCCCCHH-HHHHHHHcCCCeEE
Confidence 5778887744 7899988877 3655432222334778899999773 259999999876554 58999999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
++-++.++....= .+-.....+.+++.++..|.++|+.
T Consensus 308 igr~~l~~l~~~g-------~~gv~~~~~~l~~el~~~m~l~G~~ 345 (356)
T PF01070_consen 308 IGRPFLYALAAGG-------EEGVERVLEILKEELKRAMFLLGAR 345 (356)
T ss_dssp ESHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred EccHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999988774321 2334556778899999999999975
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.74 Score=38.86 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=59.4
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
...||.+..+..+..|+|.|-+.= .=|.-. ...-+++.|++|.+.+ ++|+-+=||-- +.+++++..+.|+.|
T Consensus 27 ~~~dP~~~a~~~~~~g~~~l~ivD--Ldaa~~--g~~~n~~~i~~i~~~~---~~~i~vgGGIr-s~ed~~~ll~~Ga~~ 98 (229)
T PF00977_consen 27 YSGDPVEVAKAFNEQGADELHIVD--LDAAKE--GRGSNLELIKEIAKET---GIPIQVGGGIR-SIEDAERLLDAGADR 98 (229)
T ss_dssp ECCCHHHHHHHHHHTT-SEEEEEE--HHHHCC--THHHHHHHHHHHHHHS---SSEEEEESSE--SHHHHHHHHHTT-SE
T ss_pred ECcCHHHHHHHHHHcCCCEEEEEE--ccCccc--CchhHHHHHHHHHhcC---CccEEEeCccC-cHHHHHHHHHhCCCE
Confidence 458998877767999999998751 101111 1335788899998887 69999999877 677899999999999
Q ss_pred eecchHHHH
Q 029540 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
+-++|....
T Consensus 99 Vvigt~~~~ 107 (229)
T PF00977_consen 99 VVIGTEALE 107 (229)
T ss_dssp EEESHHHHH
T ss_pred EEeChHHhh
Confidence 999998653
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=91.11 E-value=5.2 Score=36.64 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=80.8
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|=|=|.|- ++|.=.+...||++-.++. |-. - || +|.+.++.....
T Consensus 172 ~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d--~-vgvRiS~~~~~~~~~ 248 (391)
T PLN02411 172 LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGAD--R-VGVRVSPAIDHLDAT 248 (391)
T ss_pred HHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC--e-EEEEEcccccccCCC
Confidence 479999999999988873 5788899999999888753 311 1 33 122222111000
Q ss_pred cccccCCCHHHH---HHHhhh----h--CCcEEEEecCcCC--CCCCCC--CCC-CCHHHHHHHHhhhccCCccEEeecC
Q 029540 59 DYEAKLTDVNQA---EEFIDE----T--DIDALAVCIGNVH--GKYPSS--GPN-LKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 59 ~~~~~~T~peea---~~Fv~~----T--gvD~LAvaiGt~H--G~y~~~--~p~-ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
. ..+ .++. .+.+++ . |+|+|-|+.|+.. +..... .+. ...+..++|++.+ ++|+..-|+
T Consensus 249 ~---~~~-~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v---~~pvi~~G~ 321 (391)
T PLN02411 249 D---SDP-LNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY---QGTFMCSGG 321 (391)
T ss_pred C---Ccc-hhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc---CCCEEEECC
Confidence 0 000 1222 222332 2 5999999998632 111100 011 1124568899888 699999998
Q ss_pred CCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 125 SGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 125 SG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
- ..++-.++++.| +--|-++..+
T Consensus 322 i--~~~~a~~~l~~g~aDlV~~gR~~ 345 (391)
T PLN02411 322 F--TRELGMQAVQQGDADLVSYGRLF 345 (391)
T ss_pred C--CHHHHHHHHHcCCCCEEEECHHH
Confidence 5 457788899988 4555555544
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.2 Score=39.67 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=82.3
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|.|-+.|- ++|.=.+...||++-.++. +..|--= +... +....
T Consensus 156 ~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~R---ls~~-~~~~~ 231 (341)
T PF00724_consen 156 RRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVR---LSPD-DFVEG 231 (341)
T ss_dssp HHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEE---EETT-CSSTT
T ss_pred HHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEE---Eeee-cccCC
Confidence 378999999999999873 5777788899999988863 2222211 1111 11110
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcC-CCCC----CCC--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029540 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNV-HGKY----PSS--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y----~~~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
...+.+..+..+.+++.++|++.++.|+. |-.. ... .+....+..+.|++.+ ++|++.-|+-..| +
T Consensus 232 ---g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~---~~pvi~~G~i~~~-~ 304 (341)
T PF00724_consen 232 ---GITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV---KIPVIGVGGIRTP-E 304 (341)
T ss_dssp ---SHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH---SSEEEEESSTTHH-H
T ss_pred ---CCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc---CceEEEEeeecch-h
Confidence 00112223446667889999998876653 2111 110 2334567788899888 6998777653333 3
Q ss_pred HHHHHHhcC-CeEeecchHH
Q 029540 131 LIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 131 ~~~~~i~~G-i~KINi~T~l 149 (192)
+..++++.| +-=|-++..+
T Consensus 305 ~ae~~l~~g~~DlV~~gR~~ 324 (341)
T PF00724_consen 305 QAEKALEEGKADLVAMGRPL 324 (341)
T ss_dssp HHHHHHHTTSTSEEEESHHH
T ss_pred hhHHHHhcCCceEeeccHHH
Confidence 366777776 5556666554
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=11 Score=36.68 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=78.6
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhh
Q 029540 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DET 77 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~T 77 (192)
+|.+.|.+.+= || +|..-+|++. -++.+++.|..+|+-|=..+. ...+++...+++ .+.
T Consensus 104 ~a~~~Gidv~Rifd--~lnd~~n~~~---~i~~~k~~G~~~~~~i~yt~s------------p~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 104 LAVNNGVDVFRVFD--ALNDARNLKV---AIDAIKSHKKHAQGAICYTTS------------PVHTLDNFLELGKKLAEM 166 (596)
T ss_pred HHHHcCCCEEEEcc--cCcchHHHHH---HHHHHHHcCCEEEEEEEecCC------------CCCCHHHHHHHHHHHHHc
Confidence 45667766553 44 5555666655 567778889988877655531 134555544443 457
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|+++ -.=|.. .|.-=.++++.|++.+ ++|+-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 167 Gad~I~Ik--DtaG~l---~P~~v~~lv~alk~~~---~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 167 GCDSIAIK--DMAGLL---TPTVTVELYAGLKQAT---GLPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCCEEEeC--CcccCC---CHHHHHHHHHHHHhhc---CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 99987764 333333 2555567778888776 57776665 6888889999999999988743
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.6 Score=33.06 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..+.|++..+.+++++.|++++|.-..+ |. +.+ .++++.+++.-. ..+++.+-| . .|++++.+..++|+..
T Consensus 35 ~~vp~e~~~~~a~~~~~d~V~iS~~~~~--~~---~~~-~~~~~~L~~~~~-~~i~i~~GG-~-~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 35 LRQTPEEIVEAAIQEDVDVIGLSSLSGG--HM---TLF-PEVIELLRELGA-GDILVVGGG-I-IPPEDYELLKEMGVAE 105 (122)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcccchh--hH---HHH-HHHHHHHHhcCC-CCCEEEEEC-C-CCHHHHHHHHHCCCCE
Confidence 4588999999999999999999965421 21 111 333455555421 135555544 4 4677899999999854
Q ss_pred -eecchHHHHH
Q 029540 143 -FNVNTEVRKA 152 (192)
Q Consensus 143 -INi~T~l~~a 152 (192)
|+-+|.....
T Consensus 106 ~~~~~~~~~~~ 116 (122)
T cd02071 106 IFGPGTSIEEI 116 (122)
T ss_pred EECCCCCHHHH
Confidence 5666665443
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.8 Score=37.91 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||.+..+..++-|+.+|=|- .+ | + -.-+++.+++|.+ + ++|+-+=||-- .|++++.++.|+.||
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLd---g---g--~~~n~~~i~~i~~-~---~~~vqvGGGIR--~e~i~~~l~~Ga~rV 108 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLG---A---D--DASLAAALEALRA-Y---PGGLQVGGGVN--SENAMSYLDAGASHV 108 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECC---C---C--CcccHHHHHHHHh-C---CCCEEEeCCcc--HHHHHHHHHcCCCEE
Confidence 589876666667777665432 21 1 1 2336899999988 6 69999999776 499999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|...
T Consensus 109 iigT~Av 115 (262)
T PLN02446 109 IVTSYVF 115 (262)
T ss_pred EEchHHH
Confidence 9999764
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.9 Score=40.19 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 99 NLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 99 ~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
..+|++|+++.+.+ ++|+|+=.-.|+ .+++++++.++|+.=|=++|.+.
T Consensus 180 ~~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~ 229 (283)
T cd04727 180 QAPYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 229 (283)
T ss_pred CCCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhh
Confidence 46999999999987 599985555578 88999999999999999999985
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.7 Score=37.18 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.|.+|.++.++.++.|...|=+..=+. .. + -..+++.+++|.+.+ ++|+-+=||-. +.|++++.+..|+.|
T Consensus 29 ~y~~p~~~a~~~~~~g~~~lhivDLd~--a~-g--~~~n~~~i~~i~~~~---~~~v~vgGGIr-s~e~~~~~l~~Ga~~ 99 (243)
T TIGR01919 29 YYGSLESAAKWWEQGGAEWIHLVDLDA--AF-G--GGNNEMMLEEVVKLL---VVVEELSGGRR-DDSSLRAALTGGRAR 99 (243)
T ss_pred ecCCHHHHHHHHHhCCCeEEEEEECCC--CC-C--CcchHHHHHHHHHHC---CCCEEEcCCCC-CHHHHHHHHHcCCCE
Confidence 578998888877888876666553211 11 1 234788999999877 58999988766 556799999999999
Q ss_pred eecchHH
Q 029540 143 FNVNTEV 149 (192)
Q Consensus 143 INi~T~l 149 (192)
|.++|..
T Consensus 100 vvigT~a 106 (243)
T TIGR01919 100 VNGGTAA 106 (243)
T ss_pred EEECchh
Confidence 9999984
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.9 Score=39.36 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=81.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.|.+-||-|.+.| |-.++.++|...|+ .+++|+.=|=-- +|. --+.+.|+ -++.+|++
T Consensus 112 ~a~~g~yGa~L~~--------~~eLv~e~V~~v~~~l~~pVs~KIRI~---~d~---------~kTvd~ak-~~e~aG~~ 170 (358)
T KOG2335|consen 112 VAKRGGYGAFLMD--------NPELVGEMVSAVRANLNVPVSVKIRIF---VDL---------EKTVDYAK-MLEDAGVS 170 (358)
T ss_pred HHhcCCccceecc--------CHHHHHHHHHHHHhhcCCCeEEEEEec---CcH---------HHHHHHHH-HHHhCCCc
Confidence 4667788888776 45778888877774 677777665322 110 01223343 36789999
Q ss_pred EEEEecCcCCCCCCC--C--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchH
Q 029540 81 ALAVCIGNVHGKYPS--S--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTE 148 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~--~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~ 148 (192)
.|+| ||.... + .+.+|++.++.|++.+. +||+..-|+-....| ..+|.+ .|+.=|-.+-.
T Consensus 171 ~ltV-----HGRtr~~kg~~~~pad~~~i~~v~~~~~--~ipviaNGnI~~~~d-~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 171 LLTV-----HGRTREQKGLKTGPADWEAIKAVRENVP--DIPVIANGNILSLED-VERCLKYTGADGVMSARG 235 (358)
T ss_pred EEEE-----ecccHHhcCCCCCCcCHHHHHHHHHhCc--CCcEEeeCCcCcHHH-HHHHHHHhCCceEEecch
Confidence 9975 998742 1 47799999999999884 399999999887766 555555 88776655443
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=90.67 E-value=4.1 Score=33.29 Aligned_cols=78 Identities=22% Similarity=0.442 Sum_probs=47.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH---HHHHHHhhhccCCc-c-EEeecCCCCCHHHHHHHHhcC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD---LLKDLHALSSKKGV-L-LVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~---~L~~I~~~~~~~~i-P-LVlHGgSG~~~e~~~~~i~~G 139 (192)
|+.+.++++. ..+|.+.+ ++.|-...+ ...+.+ .++++++..+..++ | +++=| |+..++++++++.|
T Consensus 120 t~~e~~~~~~--~~~d~i~~--~~~~~g~tg--~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G--GI~~~nv~~l~~~G 191 (220)
T PRK05581 120 TPLEPLEDVL--DLLDLVLL--MSVNPGFGG--QKFIPEVLEKIRELRKLIDERGLDILIEVDG--GINADNIKECAEAG 191 (220)
T ss_pred CCHHHHHHHH--hhCCEEEE--EEECCCCCc--ccccHHHHHHHHHHHHHHHhcCCCceEEEEC--CCCHHHHHHHHHcC
Confidence 5556666664 34686553 555432221 334444 44445444421112 2 44545 99999999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|-++|.+.
T Consensus 192 aD~vvvgSai~ 202 (220)
T PRK05581 192 ADVFVAGSAVF 202 (220)
T ss_pred CCEEEEChhhh
Confidence 99999999875
|
|
| >cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.5 Score=39.69 Aligned_cols=124 Identities=11% Similarity=0.005 Sum_probs=76.6
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcE-EEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeec
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDA-LAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~-LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHG 123 (192)
..+++||.+.++++ +.|+|. +++++....+.+-+. ...+ +.-+++|-+.+++.++|.++|+
T Consensus 197 ~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp-~~f~ef~~P~~k~i~~~i~~~g~~~ilh~ 275 (378)
T cd03308 197 DLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRP-KQFEKFYWPSFKKVVEGLAARGQRIFLFF 275 (378)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCH-HHHHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46889999888876 368885 666665555444321 1111 2334566655544468999997
Q ss_pred CCCCCHHHHHHHHhcCCeEe-ec--chHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 124 ASGLSAELIKGCIERGVRKF-NV--NTEVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KI-Ni--~T~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
. |.....+....++|..++ ++ .+++..+- +.+.+ .+.++..+..-..+.+++.+++.|+.++.
T Consensus 276 c-G~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak-~~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~ 346 (378)
T cd03308 276 E-GDWERYLEYLQELPKGKTVGLFEYGDPKKVK-EKLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAP 346 (378)
T ss_pred C-CCcHHHHHHHHhcCCCcEEEcCCCCCHHHHH-HHhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCC
Confidence 5 555556777778888753 32 35554432 22322 24466644444668899999999998773
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=90.52 E-value=13 Score=33.46 Aligned_cols=148 Identities=22% Similarity=0.213 Sum_probs=92.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|++.|.+.|-+=. +....+ ..++.+++|++.|..|.+-+=.. ..++|++..++++ +.|
T Consensus 96 ~a~~~gvd~iri~~-~~~e~~---~~~~~i~~ak~~G~~v~~~l~~a--------------~~~~~e~l~~~a~~~~~~G 157 (337)
T PRK08195 96 MAYDAGVRVVRVAT-HCTEAD---VSEQHIGLARELGMDTVGFLMMS--------------HMAPPEKLAEQAKLMESYG 157 (337)
T ss_pred HHHHcCCCEEEEEE-ecchHH---HHHHHHHHHHHCCCeEEEEEEec--------------cCCCHHHHHHHHHHHHhCC
Confidence 57888998876543 233333 36899999999998776543211 3467777666654 579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC--CCCHHHHHHHHhcCCeEe------------e
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS--GLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS--G~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|++.++ -.-|... |.-=.++++.|++..+ .++|+-+|+=. |+.-.....|++.|+.-| |
T Consensus 158 a~~i~i~--DT~G~~~---P~~v~~~v~~l~~~l~-~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN 231 (337)
T PRK08195 158 AQCVYVV--DSAGALL---PEDVRDRVRALRAALK-PDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGN 231 (337)
T ss_pred CCEEEeC--CCCCCCC---HHHHHHHHHHHHHhcC-CCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccC
Confidence 9976543 4434332 3333455566666552 25888888754 666677888999998876 6
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHHHHHH
Q 029540 145 VNTEVRKAYMDSLS-RPKSDLIHLMASAKE 173 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~~~~~ 173 (192)
..|+...++.+... +.+.|+..++..+..
T Consensus 232 ~~tE~lv~~L~~~g~~tgidl~~l~~~a~~ 261 (337)
T PRK08195 232 TPLEVLVAVLDRMGWETGVDLYKLMDAAED 261 (337)
T ss_pred ccHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 67887777766542 223455555444433
|
|
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.5 Score=35.83 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=76.8
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhccCCccEEeec
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
..+++||.+.++++ +.|+|.+.++--.+-+.+-+ |+ +=..-+++|-+.++..+.|.++|-
T Consensus 151 ~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~is--p~~f~e~~~p~~k~i~~~i~~~g~~~~lH~ 228 (330)
T cd03465 151 LLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILS--PEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCC--HHHHHHHhhHHHHHHHHHHHHcCCceEEEE
Confidence 36788977776664 24888877764222111111 21 112234555555543468999999
Q ss_pred CCCCCHHHHHHHHhcCCeEeecc--hHHHHHHHHHhcC-----CCCChH-HHHHHHHHHHHHHHHHHHHHhCC
Q 029540 124 ASGLSAELIKGCIERGVRKFNVN--TEVRKAYMDSLSR-----PKSDLI-HLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KINi~--T~l~~a~~~~~~~-----~~~~~~-~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
+ |.....+....++|+.=+|++ +++..+ .+.+.. .+.|+. .+.....+.+++.+++.|+.++.
T Consensus 229 c-G~~~~~~~~l~~~~~d~~~~d~~~dl~~~-~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~ 299 (330)
T cd03465 229 C-GDTAPILELMADLGADVFSIDVTVDLAEA-KKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLK 299 (330)
T ss_pred C-CCchhHHHHHHHhCCCeEeecccCCHHHH-HHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhC
Confidence 8 666677899999999888987 344422 222322 234676 55556678899999999998865
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. |
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=90.37 E-value=6.2 Score=33.29 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=57.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC----CCCHHHHH-------
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS----GLSAELIK------- 133 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS----G~~~e~~~------- 133 (192)
...+++.+.+.+.|.|.+=+..+..|-.+. +.++.+.++++++..+..++++++|+.. ..|++..+
T Consensus 10 ~~~~~~~~~~~~~G~~~vel~~~~~~~~~~---~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l 86 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQLFLGNPRSWKG---VRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERL 86 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHH
Confidence 345678888999999999999999886542 4566666777777766668999999854 23333222
Q ss_pred -----HHHhcCCeEeecchH
Q 029540 134 -----GCIERGVRKFNVNTE 148 (192)
Q Consensus 134 -----~~i~~Gi~KINi~T~ 148 (192)
.|-.+|+..|++.+.
T Consensus 87 ~~~i~~A~~lGa~~vv~h~g 106 (273)
T smart00518 87 IDEIKRCEELGIKALVFHPG 106 (273)
T ss_pred HHHHHHHHHcCCCEEEEccc
Confidence 255778888888654
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.3 Score=34.67 Aligned_cols=79 Identities=23% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC----CCCHHHHHHHHhcC
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS----GLSAELIKGCIERG 139 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS----G~~~e~~~~~i~~G 139 (192)
-+.|++..+-+.++++|.+++|+=+.|.. +. =.+.++.+++.-. .++++++=|.- +.+.+..+++.++|
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~-----~~-~~~~~~~L~~~~~-~~~~i~vGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGE-----ID-CRGLREKCIEAGL-GDILLYVGGNLVVGKHDFEEVEKKFKEMG 112 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCH-----HH-HHHHHHHHHhcCC-CCCeEEEECCCCCCccChHHHHHHHHHcC
Confidence 47889999999999999999998666532 11 1344566665511 14655554432 23567788999999
Q ss_pred CeEeec-chHH
Q 029540 140 VRKFNV-NTEV 149 (192)
Q Consensus 140 i~KINi-~T~l 149 (192)
+.+|=- +|++
T Consensus 113 ~~~vf~~~~~~ 123 (137)
T PRK02261 113 FDRVFPPGTDP 123 (137)
T ss_pred CCEEECcCCCH
Confidence 877644 4444
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=90.14 E-value=2.1 Score=38.87 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecC--cCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIG--NVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiG--t~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..+||.|++.+ +.|+|.+=|+|| ..|+-= ..+.+--.+..|.++.+.....++|+..-||--.+-| +-||+.+|-
T Consensus 158 V~T~e~a~~Li-~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gD-I~KALA~GA 235 (343)
T TIGR01305 158 VVTGEMVEELI-LSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGD-VAKAFGAGA 235 (343)
T ss_pred ccCHHHHHHHH-HcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhH-HHHHHHcCC
Confidence 57888998866 689999999976 456432 2222223778888888888766899999999888866 889999999
Q ss_pred eEeecchHH
Q 029540 141 RKFNVNTEV 149 (192)
Q Consensus 141 ~KINi~T~l 149 (192)
.=+-++.-+
T Consensus 236 d~VMlG~ll 244 (343)
T TIGR01305 236 DFVMLGGMF 244 (343)
T ss_pred CEEEECHhh
Confidence 999988443
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=90.08 E-value=10 Score=32.91 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=54.9
Q ss_pred cCCCHHHHHHHhhh---hCCcEEEEec-C---cCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 63 KLTDVNQAEEFIDE---TDIDALAVCI-G---NVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 63 ~~T~peea~~Fv~~---TgvD~LAvai-G---t~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
..++|+++++.|++ .|+|++=+-. | +.+ .+.+ .+.++.+.|+++-+...+.++|+..|... +..++.+
T Consensus 115 ~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-~~~~-~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---~~~i~~~ 189 (342)
T cd01299 115 VVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPG-DPPP-DTQFSEEELRAIVDEAHKAGLYVAAHAYG---AEAIRRA 189 (342)
T ss_pred eecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-CCCc-ccCcCHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHH
Confidence 35778888888764 6999886554 2 111 1122 35788899988887777678999999864 4567777
Q ss_pred HhcCCeEeecchHH
Q 029540 136 IERGVRKFNVNTEV 149 (192)
Q Consensus 136 i~~Gi~KINi~T~l 149 (192)
++.|+.-|--.+.+
T Consensus 190 l~~G~~~i~H~~~~ 203 (342)
T cd01299 190 IRAGVDTIEHGFLI 203 (342)
T ss_pred HHcCCCEEeecCCC
Confidence 77776655433333
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.01 E-value=3.5 Score=36.00 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=85.7
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|-.+|-+.|.+=.+.|+-+ ..++++++||.+|..|=.|. -|.+|.++.++ .|.+.+
T Consensus 125 Ar~~GADavLLI~~~L~~~----~l~el~~~A~~LGm~~LVEV-------------------h~~eEl~rAl~-~ga~iI 180 (254)
T COG0134 125 ARAAGADAVLLIVAALDDE----QLEELVDRAHELGMEVLVEV-------------------HNEEELERALK-LGAKII 180 (254)
T ss_pred HHHcCcccHHHHHHhcCHH----HHHHHHHHHHHcCCeeEEEE-------------------CCHHHHHHHHh-CCCCEE
Confidence 3344555555555566655 56799999999997766552 34578888887 999999
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHH
Q 029540 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|..-|.|. -..|.++.++|...+.. + .++=.-||+. .+++++..+.|+.=+=|+|.+.
T Consensus 181 GINnRdL~t------f~vdl~~t~~la~~~p~-~--~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM 240 (254)
T COG0134 181 GINNRDLTT------LEVDLETTEKLAPLIPK-D--VILISESGISTPEDVRRLAKAGADAFLVGEALM 240 (254)
T ss_pred EEeCCCcch------heecHHHHHHHHhhCCC-C--cEEEecCCCCCHHHHHHHHHcCCCEEEecHHHh
Confidence 999888874 45678888888776531 2 4455677877 7889999999999999999885
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.3 Score=37.21 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=54.7
Q ss_pred CHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 66 DVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 66 ~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
+|+...+- +++.|+|+|.+.+|..+. + ....++.|++|++.+ ++|+++.+- .+.++.+++.+.|+.=
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~---~--~~~~~~~i~~l~~~~---~~pvivK~v--~s~~~a~~a~~~G~d~ 196 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVL---G--RRLTWDDLAWLRSQW---KGPLILKGI--LTPEDALRAVDAGADG 196 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCC---C--CCCCHHHHHHHHHhc---CCCEEEeec--CCHHHHHHHHHCCCCE
Confidence 67655544 466899999999988762 1 225788999999887 699999875 6678899999999987
Q ss_pred eec
Q 029540 143 FNV 145 (192)
Q Consensus 143 INi 145 (192)
|-+
T Consensus 197 I~v 199 (299)
T cd02809 197 IVV 199 (299)
T ss_pred EEE
Confidence 765
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=3.9 Score=35.93 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++|||.--|+.+--+++. .++.+++. +..++.|. .+.+|+++.. +.|+|.+.+
T Consensus 158 ~d~vlikdnHi~~~g~~~~---~v~~aR~~~~~~~~Igvsv-------------------~tleea~~A~-~~gaDyI~l 214 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITK---AVTSVREKLGHMVKIEVET-------------------ETEEQVREAV-AAGADIIMF 214 (277)
T ss_pred CceEEEchhHHHhhCCHHH---HHHHHHHhCCCCCEEEEEe-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 7899999998887766443 33333332 23333331 2457777765 799999977
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
- ++.++.|+++.+..+ .++|++-=| |+..+.+....+.|+.=|=++...
T Consensus 215 D-------------~~~~e~l~~~~~~~~-~~i~i~AiG--GIt~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 215 D-------------NRTPDEIREFVKLVP-SAIVTEASG--GITLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred C-------------CCCHHHHHHHHHhcC-CCceEEEEC--CCCHHHHHHHHHcCCCEEEEChhh
Confidence 1 245677888877663 246666666 899999999999999888776543
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=89.86 E-value=4.9 Score=38.00 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 7 GFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 7 GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+...|.+=.|.- +.+|+++..++.+++|+.+|..|+- + .|| ...|+|+.+.++++.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f--~----~Ed--------~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEF--S----CED--------AGRTEIPFLARIVEA 154 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--E----cCC--------CCCCCHHHHHHHHHH
Confidence 455566665543 5699999999999999999875432 2 233 245899999988765
Q ss_pred ---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 77 ---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 77 ---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
-|+|.+-++ -.=|.- .|.-=.++++.+++.++.. ++||-+|+ ..|+.-..--.|++.|+..|+
T Consensus 155 ~~~~Ga~~i~l~--DTvG~~---~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd 223 (494)
T TIGR00973 155 AINAGATTINIP--DTVGYA---LPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVE 223 (494)
T ss_pred HHHcCCCEEEeC--CCCCCC---CHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 488876553 222221 2544456667777665322 36788755 567888888889999998874
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=89.83 E-value=7.9 Score=32.88 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=68.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.+=+--..-| ++.++..+++.+..-. ++.+ .+ |. ...+| +++|.+|++. .+
T Consensus 95 ~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~-~~~l-----~v----Da------n~~~~-~~~a~~~~~~l~~~~ 156 (265)
T cd03315 95 RALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGD-DAEL-----RV----DA------NRGWT-PKQAIRALRALEDLG 156 (265)
T ss_pred HHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCC-CCEE-----EE----eC------CCCcC-HHHHHHHHHHHHhcC
Confidence 355678887766654433 5556555555443221 1222 11 00 01244 8999999665 47
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
++++--. -|.-|++.+++|++.+ ++|+++. .|=.+.++++++++.+ +.=||+.
T Consensus 157 i~~iEeP-----------~~~~d~~~~~~l~~~~---~ipia~d-E~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 157 LDYVEQP-----------LPADDLEGRAALARAT---DTPIMAD-ESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CCEEECC-----------CCcccHHHHHHHHhhC---CCCEEEC-CCCCCHHHHHHHHHhCCCCEEEEe
Confidence 7777431 1334788889999887 6999985 4556677888888766 6667775
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.81 E-value=8.6 Score=33.26 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH-HHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029540 17 HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN-QAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe-ea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
.|++..|...-+++++..|..||-|- .|-||+ +..++..++|.|++-.=-|..=-.|..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~gI~VS--------------------LFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~~~ 161 (237)
T TIGR00559 102 GLDVARLKDKLCELVKRFHAAGIEVS--------------------LFIDADKDQISAAAEVGADRIEIHTGPYANAYNK 161 (237)
T ss_pred CchhhhCHHHHHHHHHHHHHCCCEEE--------------------EEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc
Confidence 35666777777888888887776542 344442 455678899999998866654322321
Q ss_pred CCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHHhc-C-CeEeecchHH
Q 029540 96 SGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCIER-G-VRKFNVNTEV 149 (192)
Q Consensus 96 ~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i~~-G-i~KINi~T~l 149 (192)
...+-+ |++|...... ....|-.|-|.|+.-+.+....+. + +.-+||+-.+
T Consensus 162 --~~~~~e-l~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsi 215 (237)
T TIGR00559 162 --KEMAEE-LQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAI 215 (237)
T ss_pred --hhHHHH-HHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHH
Confidence 222222 4555443221 257899999999999999987544 4 9999999776
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=89.79 E-value=9 Score=33.43 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=49.1
Q ss_pred HHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeE
Q 029540 67 VNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRK 142 (192)
Q Consensus 67 peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~K 142 (192)
+++|.+|++. -+++++-= + -+.-|++.+++|++.+ ++|+.+ |.|=.+.++++++++.| +.=
T Consensus 190 ~~~A~~~~~~l~~~~l~~iEe---------P--~~~~d~~~~~~L~~~~---~ipIa~-~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 190 PEEAVELLRELAELGVELIEQ---------P--VPAGDDDGLAYLRDKS---PLPIMA-DESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred HHHHHHHHHHHHhcCCCEEEC---------C--CCCCCHHHHHHHHhcC---CCCEEE-eCCCCCHHHHHHHHhcCCCCE
Confidence 5789999664 47777721 1 2345889999999887 699888 45777888999999855 666
Q ss_pred eecchHH
Q 029540 143 FNVNTEV 149 (192)
Q Consensus 143 INi~T~l 149 (192)
+|+....
T Consensus 255 v~~~~~~ 261 (316)
T cd03319 255 INIKLMK 261 (316)
T ss_pred EEEeccc
Confidence 6776433
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.98 Score=39.06 Aligned_cols=138 Identities=12% Similarity=0.245 Sum_probs=79.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--C---CeE---EEeccccc----cCCCCCccccccccCCCH-
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--G---MLV---EAELGRLS----GTEDGLTVEDYEAKLTDV- 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--g---v~V---EaElG~i~----g~e~~~~~~~~~~~~T~p- 67 (192)
++++|+|...||+ |.=+|.+..+++|+.|+-. | +.- =...|... ..++.. ..-.+.-+|
T Consensus 85 ~r~LD~Ga~giiv-----P~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~---~vi~~IEt~~ 156 (256)
T PRK10558 85 KRLLDIGFYNFLI-----PFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNI---TVLVQIESQQ 156 (256)
T ss_pred HHHhCCCCCeeee-----cCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhcccc---EEEEEECCHH
Confidence 3789999999985 9999999999999999842 2 110 00111100 000000 001123344
Q ss_pred --HHHHHHhhhhCCcEEEEecC---cCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 68 --NQAEEFIDETDIDALAVCIG---NVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 68 --eea~~Fv~~TgvD~LAvaiG---t~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
+.+.+++..-|||.|.+.-+ ..-|.... ..|.+.. .+.++....+..++|.-++.++ .++.++.++.|++
T Consensus 157 av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~-a~~~v~~aa~~~G~~~g~~~~~---~~~~~~~~~~G~~ 232 (256)
T PRK10558 157 GVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQK-AIQHIFARAKAHGKPSGILAPV---EADARRYLEWGAT 232 (256)
T ss_pred HHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHH-HHHHHHHHHHHcCCceEEcCCC---HHHHHHHHHcCCC
Confidence 45566666568997765332 11122110 1132222 2344444454557888666533 4779999999999
Q ss_pred EeecchHHH
Q 029540 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
=|.+++|..
T Consensus 233 ~v~~~~D~~ 241 (256)
T PRK10558 233 FVAVGSDLG 241 (256)
T ss_pred EEEEchHHH
Confidence 999999875
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=2 Score=36.53 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=56.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.||.+..++..+.|+|.|-+.==+ |.. + -..+++.+++|.+.. ..|+-+=||-.. .|++++..+.|+.||
T Consensus 29 ~~dP~~~a~~~~~~ga~~lhivDLd--~a~-~--~~~n~~~i~~i~~~~---~~~v~vGGGIrs-~e~~~~~l~~Ga~kv 99 (232)
T PRK13586 29 LGNPIEIASKLYNEGYTRIHVVDLD--AAE-G--VGNNEMYIKEISKIG---FDWIQVGGGIRD-IEKAKRLLSLDVNAL 99 (232)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECC--CcC-C--CcchHHHHHHHHhhC---CCCEEEeCCcCC-HHHHHHHHHCCCCEE
Confidence 5699888888888999988775111 222 1 223678899998743 259888886553 477999999999999
Q ss_pred ecchHH
Q 029540 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
.++|..
T Consensus 100 vigt~a 105 (232)
T PRK13586 100 VFSTIV 105 (232)
T ss_pred EECchh
Confidence 999976
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=89.64 E-value=7 Score=32.70 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=61.6
Q ss_pred CHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 66 DVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 66 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
++++..++++ +.|||.+-+..|.....|+. -.-++++++.+++... +++++.+.-.| .++++++.++|+.-
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~--~~~~~~~i~~l~~~~~--~~~~~~l~~~~--~~~i~~a~~~g~~~ 90 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ--MEDDWEVLRAIRKLVP--NVKLQALVRNR--EKGIERALEAGVDE 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccccc--CCCHHHHHHHHHhccC--CcEEEEEccCc--hhhHHHHHhCCcCE
Confidence 7777777655 57999999999888766642 3346788888887653 57887777665 88999999999999
Q ss_pred eecchHHHH
Q 029540 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
|.+.-+...
T Consensus 91 i~i~~~~s~ 99 (265)
T cd03174 91 VRIFDSASE 99 (265)
T ss_pred EEEEEecCH
Confidence 999866553
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.8 Score=33.03 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH-HHHHHHHhhhccCCccEEeecCC-CCCHHHHH----HHH
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL-DLLKDLHALSSKKGVLLVLHGAS-GLSAELIK----GCI 136 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~-~~L~~I~~~~~~~~iPLVlHGgS-G~~~e~~~----~~i 136 (192)
...+||+..+=+.+.++|++++|.=+.|.. ..+ ++.+.+++.-- .+++ |+=||. .+|++++. ++.
T Consensus 37 ~~v~~e~~v~aa~~~~adiVglS~l~~~~~-------~~~~~~~~~l~~~gl-~~~~-vivGG~~vi~~~d~~~~~~~l~ 107 (134)
T TIGR01501 37 VLSPQEEFIKAAIETKADAILVSSLYGHGE-------IDCKGLRQKCDEAGL-EGIL-LYVGGNLVVGKQDFPDVEKRFK 107 (134)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecccccCH-------HHHHHHHHHHHHCCC-CCCE-EEecCCcCcChhhhHHHHHHHH
Confidence 458899999999999999999985332211 112 12334444311 1344 555665 68888765 588
Q ss_pred hcCCeEee
Q 029540 137 ERGVRKFN 144 (192)
Q Consensus 137 ~~Gi~KIN 144 (192)
++|+.+|=
T Consensus 108 ~~Gv~~vF 115 (134)
T TIGR01501 108 EMGFDRVF 115 (134)
T ss_pred HcCCCEEE
Confidence 99987763
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.8 Score=37.77 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=55.1
Q ss_pred CHHH-HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 66 DVNQ-AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 66 ~pee-a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
+.+| ++.-+.+...|.|-|+ |+.+|. ..|++.|+++++... ++|+.| |||+..+++.++++. ..=+.
T Consensus 158 ~~~e~a~~~~~~~~aDavivt-G~~TG~------~~d~~~l~~vr~~~~--~~Pvll--ggGvt~eNv~e~l~~-adGvi 225 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILS-GKTTGT------EVDLELLKLAKETVK--DTPVLA--GSGVNLENVEELLSI-ADGVI 225 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEEC-cCCCCC------CCCHHHHHHHHhccC--CCeEEE--ECCCCHHHHHHHHhh-CCEEE
Confidence 3444 4444556669999987 666653 358999999987553 589877 459999999999987 77889
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.++
T Consensus 226 VgS~~K 231 (257)
T TIGR00259 226 VATTIK 231 (257)
T ss_pred ECCCcc
Confidence 999886
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.7 Score=37.22 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.||.+..++.++.|+|.|-+.= .-|.- . .-..+++.+++|.+.+ +|+-+=||-. +.|++++....|+.|+-
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivD--Ld~a~-~-g~~~n~~~i~~i~~~~----~~v~vGGGIr-s~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVD--LSKAI-E-NSVENLPVLEKLSEFA----EHIQIGGGIR-SLDYAEKLRKLGYRRQI 100 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE--CCCcc-c-CCcchHHHHHHHHhhc----CcEEEecCCC-CHHHHHHHHHCCCCEEE
Confidence 5999977777789999987751 11100 1 2335899999998875 6887777544 35789999999999999
Q ss_pred cchHH
Q 029540 145 VNTEV 149 (192)
Q Consensus 145 i~T~l 149 (192)
++|..
T Consensus 101 igT~a 105 (241)
T PRK14114 101 VSSKV 105 (241)
T ss_pred ECchh
Confidence 99964
|
|
| >PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.77 Score=40.10 Aligned_cols=136 Identities=13% Similarity=0.272 Sum_probs=80.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CC---CeE----EEeccccccCCCCCcc--cc--ccccCCCH
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KG---MLV----EAELGRLSGTEDGLTV--ED--YEAKLTDV 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~g---v~V----EaElG~i~g~e~~~~~--~~--~~~~~T~p 67 (192)
++++|+|+..||+ |.=++.+..+++|+.|+- .| +.- =.-.|.. .+-... +. .-.+.-+|
T Consensus 84 ~r~LD~GA~GIiv-----P~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~---~~y~~~an~~~~vi~qiEt~ 155 (267)
T PRK10128 84 KQVLDIGAQTLLI-----PMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRI---ENYMAQANDSLCLLVQVESK 155 (267)
T ss_pred HHHhCCCCCeeEe-----cCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCCh---HHHHHHhccccEEEEEECCH
Confidence 3799999999997 889999999999999982 12 110 0001100 000000 00 00122333
Q ss_pred ---HHHHHHhhhhCCcEEEEecCc---CC---CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 68 ---NQAEEFIDETDIDALAVCIGN---VH---GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 68 ---eea~~Fv~~TgvD~LAvaiGt---~H---G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
+.+.++++--|||.|-+.-+- .- |.|. .|.+. +.++++.+.++..++|+-.|. .+.++.++.++.
T Consensus 156 ~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~--~pev~-~ai~~v~~a~~~~Gk~~G~~~---~~~~~a~~~~~~ 229 (267)
T PRK10128 156 TALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAG--HPEVQ-RIIETSIRRIRAAGKAAGFLA---VDPDMAQKCLAW 229 (267)
T ss_pred HHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCC--CHHHH-HHHHHHHHHHHHcCCeEEEcC---CCHHHHHHHHHc
Confidence 456666766789987643221 11 2222 13222 334555555655678886554 445889999999
Q ss_pred CCeEeecchHHH
Q 029540 139 GVRKFNVNTEVR 150 (192)
Q Consensus 139 Gi~KINi~T~l~ 150 (192)
|++=|.+++|..
T Consensus 230 G~~~v~~g~D~~ 241 (267)
T PRK10128 230 GANFVAVGVDTM 241 (267)
T ss_pred CCcEEEEChHHH
Confidence 999999999973
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.4 Score=34.45 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+.+|++..+=+.++++|.+.+|-=. +.| ..+-.++++++++.-. .++|++..| .+|++++++..++||..
T Consensus 38 ~~~s~e~~v~aa~e~~adii~iSsl~--~~~----~~~~~~~~~~L~~~g~-~~i~vivGG--~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 38 LFQTPEEIARQAVEADVHVVGVSSLA--GGH----LTLVPALRKELDKLGR-PDILVVVGG--VIPPQDFDELKEMGVAE 108 (132)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCch--hhh----HHHHHHHHHHHHhcCC-CCCEEEEeC--CCChHhHHHHHHCCCCE
Confidence 56899999888999999999997311 111 2223445566665421 146777755 35788899999999854
Q ss_pred -eecchHHH
Q 029540 143 -FNVNTEVR 150 (192)
Q Consensus 143 -INi~T~l~ 150 (192)
|.-+|++.
T Consensus 109 ~~~~gt~~~ 117 (132)
T TIGR00640 109 IFGPGTPIP 117 (132)
T ss_pred EECCCCCHH
Confidence 55566553
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.20 E-value=2 Score=37.33 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=62.0
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 63 KLTDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
..-||-+..++..+-|+|=|-.= |--+| ..-.++++.+++..+.+ -|||..-||-... |++++....|.-
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~-----~gr~~~~~vv~r~A~~v---fiPltVGGGI~s~-eD~~~ll~aGAD 98 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASS-----EGRETMLDVVERVAEQV---FIPLTVGGGIRSV-EDARKLLRAGAD 98 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccc-----ccchhHHHHHHHHHhhc---eeeeEecCCcCCH-HHHHHHHHcCCC
Confidence 35789888888899999977642 22222 13568999999999888 6999999987754 669999999999
Q ss_pred EeecchHH
Q 029540 142 KFNVNTEV 149 (192)
Q Consensus 142 KINi~T~l 149 (192)
||-|+|.-
T Consensus 99 KVSINsaA 106 (256)
T COG0107 99 KVSINSAA 106 (256)
T ss_pred eeeeChhH
Confidence 99999975
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=88.92 E-value=5.6 Score=38.95 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hCCcEEEEecCcCCCCCCC
Q 029540 19 PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~ 95 (192)
+.+|+++..++.+++|+.+|.. +.+.+ .||. ..|+|+.+.++++. -|+|.+-++ -.=|..
T Consensus 204 t~ee~l~~~~~~V~~Ak~~G~~-~v~fs----~EDa--------~rtd~d~l~~~~~~a~~aGa~~I~L~--DTvG~~-- 266 (632)
T PLN02321 204 TPDEVVEIARDMVKYARSLGCE-DVEFS----PEDA--------GRSDPEFLYRILGEVIKAGATTLNIP--DTVGYT-- 266 (632)
T ss_pred CHHHHHHHHHHHHHHHHHcCCc-eEEEe----cccC--------CCCCHHHHHHHHHHHHHcCCCEEEec--ccccCC--
Confidence 5699999999999999999863 22222 2332 45899988888764 588876553 332322
Q ss_pred CCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 96 SGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 96 ~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
.|.-=.++++.|++.+... ++||-+|+ ..|+.-..--.|+..|+..|+.
T Consensus 267 -~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~ 318 (632)
T PLN02321 267 -LPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEV 318 (632)
T ss_pred -CHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 2443456667777665422 37788888 6688888888999999988753
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.5 Score=35.66 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=34.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|-... |.++...+.++... ..+.+|+- |-| +++.+.+|. +||||.
T Consensus 95 ea~~~g~d~I~lD~~~~---~~~~~~v~~l~~~~-~~v~ie~S-GGI-----------------~~~ni~~ya-~~gvD~ 151 (169)
T PF01729_consen 95 EALEAGADIIMLDNMSP---EDLKEAVEELRELN-PRVKIEAS-GGI-----------------TLENIAEYA-KTGVDV 151 (169)
T ss_dssp HHHHTT-SEEEEES-CH---HHHHHHHHHHHHHT-TTSEEEEE-SSS-----------------STTTHHHHH-HTT-SE
T ss_pred HHHHhCCCEEEecCcCH---HHHHHHHHHHhhcC-CcEEEEEE-CCC-----------------CHHHHHHHH-hcCCCE
Confidence 68999999999998843 44444444443333 23666664 211 224556655 899997
Q ss_pred EEE
Q 029540 82 LAV 84 (192)
Q Consensus 82 LAv 84 (192)
+.+
T Consensus 152 isv 154 (169)
T PF01729_consen 152 ISV 154 (169)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.67 E-value=4.3 Score=35.73 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCe-EEEeccccccCCCCCccccccccCCCHHHHHHHhhhh------CCc-EEEEecCcCC
Q 029540 19 PFKDNISHTKYISFLAHSKGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET------DID-ALAVCIGNVH 90 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T------gvD-~LAvaiGt~H 90 (192)
+.+|+++..++++++|+.+|.. +..-++.--+.|| ..-++|+...++++.- |+| ..-+++.-.=
T Consensus 114 s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~ED--------asr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTv 185 (284)
T cd07942 114 SKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPES--------FSDTELDFALEVCEAVIDVWQPTPENKIILNLPATV 185 (284)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCceEEEEECCcc--------CCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccc
Confidence 6799999999999999998753 0001111112222 2348899888888653 444 2233433333
Q ss_pred CCCCCCCCCCCHHHHHHHHhhhccC-CccEEeecC--CCCCHHHHHHHHhcCCeEee
Q 029540 91 GKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHGA--SGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 91 G~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHGg--SG~~~e~~~~~i~~Gi~KIN 144 (192)
|.- .|.-=.++++.|++.+... ++||-+|+= -|+.-...-.|+..|+..|+
T Consensus 186 G~a---~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 186 EVA---TPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred ccc---CHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 322 1322246677777665321 356777664 56777888889999999887
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=88.62 E-value=10 Score=29.75 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=73.3
Q ss_pred hhhhcCCCEeEeeCCCC---C--HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC-CHHHHHHH--
Q 029540 2 EAIVLGFDSLMVDGSHL---P--FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT-DVNQAEEF-- 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l---~--~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T-~peea~~F-- 73 (192)
+|.++|.+-||+-.... + .++.++..+++.+.+ +.+++|=... +. ..| +|++..++
T Consensus 73 ~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--~p-------------~~~~~~~~~~~~~~ 136 (201)
T cd00945 73 EAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--ET-------------RGLKTADEIAKAAR 136 (201)
T ss_pred HHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--EC-------------CCCCCHHHHHHHHH
Confidence 67889999998864432 1 366666667777766 3454433221 00 012 56666655
Q ss_pred -hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 74 -IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 74 -v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.+.-|+|.+-.+.|.. + ...+++.+++|.+..+ .++|+..-||... .+++..+...|..
T Consensus 137 ~~~~~g~~~iK~~~~~~----~---~~~~~~~~~~i~~~~~-~~~~v~~~gg~~~-~~~~~~~~~~Ga~ 196 (201)
T cd00945 137 IAAEAGADFIKTSTGFG----G---GGATVEDVKLMKEAVG-GRVGVKAAGGIKT-LEDALAAIEAGAD 196 (201)
T ss_pred HHHHhCCCEEEeCCCCC----C---CCCCHHHHHHHHHhcc-cCCcEEEECCCCC-HHHHHHHHHhccc
Confidence 3567999998776542 2 2347888898987763 1478888887763 5778888888754
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=88.46 E-value=5 Score=35.04 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
+++||+-.-|+-+.-++.. .+.++.+++.- ..+|.| -.+++|+.+-+ +.|+|.+.+
T Consensus 152 ~d~vlikdnH~~~~g~~~~-~~av~~~R~~~~~~~IgVe-------------------v~t~eea~~A~-~~gaD~I~l- 209 (272)
T cd01573 152 SETILVFAEHRAFLGGPEP-LKALARLRATAPEKKIVVE-------------------VDSLEEALAAA-EAGADILQL- 209 (272)
T ss_pred CcceEeehhHHHHhCCchH-HHHHHHHHHhCCCCeEEEE-------------------cCCHHHHHHHH-HcCCCEEEE-
Confidence 6789999988877666544 34445555431 122222 13468888865 789997664
Q ss_pred cCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 86 IGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
||. |+ +-++++.+.++. .++|++-=| |+..+.+....+.|+.=| +-+.+
T Consensus 210 -d~~---~p--------~~l~~~~~~~~~~~~~i~i~AsG--GI~~~ni~~~~~~Gvd~I-~vsai 260 (272)
T cd01573 210 -DKF---SP--------EELAELVPKLRSLAPPVLLAAAG--GINIENAAAYAAAGADIL-VTSAP 260 (272)
T ss_pred -CCC---CH--------HHHHHHHHHHhccCCCceEEEEC--CCCHHHHHHHHHcCCcEE-EEChh
Confidence 443 32 223444443322 158999999 788999999999999999 65555
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.45 E-value=2.2 Score=38.16 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KI 143 (192)
+...+..+-++++|+|+|+|---|.=-.|.+ | +|++.++++++.++ ++|+..-|+--.+++ .+++.+ .|+.=|
T Consensus 152 ~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~--~-ad~~~I~~vk~~~~--~ipvi~NGdI~s~~~-a~~~l~~tg~DgV 225 (323)
T COG0042 152 ILALEIARILEDAGADALTVHGRTRAQGYLG--P-ADWDYIKELKEAVP--SIPVIANGDIKSLED-AKEMLEYTGADGV 225 (323)
T ss_pred ccHHHHHHHHHhcCCCEEEEecccHHhcCCC--c-cCHHHHHHHHHhCC--CCeEEeCCCcCCHHH-HHHHHHhhCCCEE
Confidence 4566888889999999998744444444543 3 89999999999984 399999997655555 555555 678888
Q ss_pred ecchHH
Q 029540 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
.++-..
T Consensus 226 MigRga 231 (323)
T COG0042 226 MIGRGA 231 (323)
T ss_pred EEcHHH
Confidence 887654
|
|
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=88.42 E-value=4.4 Score=34.58 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=57.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH----h---
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF----I--- 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F----v--- 74 (192)
+++++|.+++ +|.+...+.++. ..+.++|++.|+.+=.=+|.-..... . . ...-.+.++..+. +
T Consensus 40 ~~~~~Gvtti-v~~~~~~~~~~~---~~~~~~~~~~g~~v~~~~G~hp~~~~--~--~-~~~~~~~~~l~~~~~~~l~~~ 110 (293)
T cd00530 40 RFRAHGGRTI-VDATPPGIGRDV---EKLAEVARATGVNIVAATGFYKDAFY--P--E-WVRLRSVEELTDMLIREIEEG 110 (293)
T ss_pred HHHHcCCCeE-EEcCCcccCcCH---HHHHHHHHHhCCcEEEecccCCCccC--h--H-HHhhCCHHHHHHHHHHHHHhc
Confidence 5677888877 565544333333 33445555666655555554321100 0 0 0001222333221 1
Q ss_pred -hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC--CCHHHHHHHHhcCC
Q 029540 75 -DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG--LSAELIKGCIERGV 140 (192)
Q Consensus 75 -~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG--~~~e~~~~~i~~Gi 140 (192)
..+++ -|++||.+=.-|. ......+.|++.-+..+..+.|+++|-..+ -.++.+....+.|+
T Consensus 111 ~~~~~i--~~~~IGEigld~~--~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~ 175 (293)
T cd00530 111 IEGTGI--KAGIIKEAGGSPA--ITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGV 175 (293)
T ss_pred cccCCc--CceEEEEeecCCC--CCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCC
Confidence 12333 3344444422231 123344444444444334478888886654 44455555555565
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.1 Score=39.62 Aligned_cols=75 Identities=8% Similarity=0.181 Sum_probs=47.9
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecc
Q 029540 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVN 146 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~ 146 (192)
.+-.+.+++.|+|+|.|---|..-.|+ ...|++.+++|++.+ +||++..|+--.+++ ++++.+. |+.=|-++
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~---~~a~w~~i~~i~~~~---~ipvi~NGdI~s~~d-~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYK---GPADWEAIAEIKEAL---PIPVIANGDIFSPED-AERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCT---S---HHHHHHCHHC----TSEEEEESS--SHHH-HHHHCCCH-SSEEEES
T ss_pred HHHHHHhhhcccceEEEecCchhhcCC---cccchHHHHHHhhcc---cceeEEcCccCCHHH-HHHHHHhcCCcEEEEc
Confidence 344455678999999874444444454 367999999999988 699999999887755 5665554 99888888
Q ss_pred hHH
Q 029540 147 TEV 149 (192)
Q Consensus 147 T~l 149 (192)
..+
T Consensus 214 Rga 216 (309)
T PF01207_consen 214 RGA 216 (309)
T ss_dssp HHH
T ss_pred hhh
Confidence 765
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.20 E-value=12 Score=33.91 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=82.1
Q ss_pred hhhhcCCCEeE----eeCCCCC---HHHHHHHHHHHHHHHHhCCCeEEEec-cccccCCCCCccccccccCCCH----HH
Q 029540 2 EAIVLGFDSLM----VDGSHLP---FKDNISHTKYISFLAHSKGMLVEAEL-GRLSGTEDGLTVEDYEAKLTDV----NQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM----~D~S~l~---~eeNi~~Tk~vv~~Ah~~gv~VEaEl-G~i~g~e~~~~~~~~~~~~T~p----ee 69 (192)
+|+++|-+-|. |+ +..+ -+++++..++|.+.|++.|+++=.|+ =.-.+..+... . +-.-.+| .-
T Consensus 114 ~a~~~GAdAVk~lv~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~-~--~~a~~~p~~V~~a 189 (340)
T PRK12858 114 RIKEAGADAVKLLLYYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA-E--EFAKVKPEKVIKT 189 (340)
T ss_pred HHHHcCCCEEEEEEEeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc-c--cccccCHHHHHHH
Confidence 46777766554 34 3433 46888889999999999999998884 33222221110 0 0011344 34
Q ss_pred HHHHhh-hhCCcEEEEec-CcCCCCC--CCCCCCC-C---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHH----HHh
Q 029540 70 AEEFID-ETDIDALAVCI-GNVHGKY--PSSGPNL-K---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKG----CIE 137 (192)
Q Consensus 70 a~~Fv~-~TgvD~LAvai-Gt~HG~y--~~~~p~l-d---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~----~i~ 137 (192)
++.|.+ +.|+|.|=+-+ |+.+.+. ..+.... + .+.++++.+.+ ++|.|+=||- .++++|.+ |++
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG-~~~~~f~~~l~~A~~ 265 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAG-VSPELFRRTLEFACE 265 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCC-CCHHHHHHHHHHHHH
Confidence 677776 89999998864 2322211 0000001 1 13455555554 7998886653 47776665 566
Q ss_pred cCC--eEeecchHHHHHHHHHhc
Q 029540 138 RGV--RKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 138 ~Gi--~KINi~T~l~~a~~~~~~ 158 (192)
.|. +=|=++- ..|.+++.
T Consensus 266 aGa~f~Gvl~GR---niwq~~v~ 285 (340)
T PRK12858 266 AGADFSGVLCGR---ATWQDGIE 285 (340)
T ss_pred cCCCccchhhhH---HHHhhhhc
Confidence 666 5554443 33444444
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=13 Score=32.12 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH-HHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029540 17 HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN-QAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe-ea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
.|++..|...-+++++..|..||.|- .|-||+ +..+..+++|.|++-.=-|..=-.|..
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~gIrVS--------------------LFidP~~~qi~~A~~~GAd~VELhTG~yA~a~~~ 164 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDAGIRVS--------------------LFIDPDPEQIEAAAEVGADRIELHTGPYADAKTE 164 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHCCCEEE--------------------EEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc
Confidence 35566777777777777777775442 233332 345568899999988766554222221
Q ss_pred CCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHH
Q 029540 96 SGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEV 149 (192)
Q Consensus 96 ~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l 149 (192)
....-|+.|...... ....|-.|-|.|+.-+.+....+ -+|.-+||+-.+
T Consensus 165 ----~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsi 216 (239)
T PRK05265 165 ----AEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAI 216 (239)
T ss_pred ----chHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHH
Confidence 223334555443221 25789999999999999999655 579999999776
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=88.15 E-value=11 Score=35.97 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=83.9
Q ss_pred hhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029540 3 AIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++|..-|++=.|.- +.+||++..++.+++|+.+|..|+--.-+. .| ...|+|+.+.+
T Consensus 90 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f---~D--------~~r~~~~~l~~ 158 (526)
T TIGR00977 90 LIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHF---FD--------GYKANPEYALA 158 (526)
T ss_pred HhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeee---ee--------cccCCHHHHHH
Confidence 4566777677655443 679999999999999999998776322121 01 13489999888
Q ss_pred Hhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 73 FIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 73 Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+++. -|+|.+-++ =|+ |.- .|.-=.++++.+++.++ .+||-+|+ ..|+.-..--.|+..|+..|+.
T Consensus 159 ~~~~a~~aGad~i~i~-DTv-G~~---~P~~v~~li~~l~~~~~--~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~ 229 (526)
T TIGR00977 159 TLATAQQAGADWLVLC-DTN-GGT---LPHEISEITTKVKRSLK--QPQLGIHAHNDSGTAVANSLLAVEAGATMVQG 229 (526)
T ss_pred HHHHHHhCCCCeEEEe-cCC-CCc---CHHHHHHHHHHHHHhCC--CCEEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 8765 589988776 222 221 24444566677776663 23477766 4577777777888888888765
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.3 Score=33.31 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=85.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeE-E-------Eecc--cc-ccCCCC-C-cc-ccccc----c
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLV-E-------AELG--RL-SGTEDG-L-TV-EDYEA----K 63 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~V-E-------aElG--~i-~g~e~~-~-~~-~~~~~----~ 63 (192)
.+++.|++.|=+=-...+-.|-++..++....++....+| - .++| .| .+..+. . .. ...+. -
T Consensus 32 ~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~~~~~~~~~~i~G 111 (187)
T PRK07455 32 AVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIEAAVAQDIPIIPG 111 (187)
T ss_pred HHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEEcC
Confidence 5788899999887777777788877777655442111000 0 0111 01 111110 0 00 00000 0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
-.+|+|+.+ ..+.|+|.+.+ |+. .+-+-++.|+.++.... ++|+|==| |++.+++....+.|+.=+
T Consensus 112 ~~t~~e~~~-A~~~Gadyv~~--------Fpt-~~~~G~~~l~~~~~~~~--~ipvvaiG--GI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVT-AWQAGASCVKV--------FPV-QAVGGADYIKSLQGPLG--HIPLIPTG--GVTLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHH-HHHCCCCEEEE--------CcC-CcccCHHHHHHHHhhCC--CCcEEEeC--CCCHHHHHHHHHCCCeEE
Confidence 257888876 44689999997 654 35567888999998773 49999888 788899999999999888
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=+.+.+.
T Consensus 178 av~s~i~ 184 (187)
T PRK07455 178 GLSGQLF 184 (187)
T ss_pred EEehhcc
Confidence 7777653
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=4.1 Score=35.76 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=72.8
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.-.|+-+-+.+ ++.++.+++. ...+|.|. .+.|||++.+ +.|+|.+-.
T Consensus 152 ~d~vlikdnHi~~~g~i---~~~v~~~k~~~p~~~~I~VEv-------------------~tleea~~A~-~~GaDiI~L 208 (273)
T PRK05848 152 DDCLMLKDTHLKHIKDL---KEFIQHARKNIPFTAKIEIEC-------------------ESLEEAKNAM-NAGADIVMC 208 (273)
T ss_pred hhhhCcCHHHHHHHCcH---HHHHHHHHHhCCCCceEEEEe-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 45899988887766544 4455555542 35677763 2447899988 588997762
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-+.+++.|+++-+..+. .++++-.=| |+..+++++..++|+.-|=+++...
T Consensus 209 -------------Dn~~~e~l~~~v~~~~~~~~~~~ieAsG--gIt~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 209 -------------DNMSVEEIKEVVAYRNANYPHVLLEASG--NITLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -------------CCCCHHHHHHHHHHhhccCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEeChhhc
Confidence 12367777777665321 235566667 6799999999999999999888653
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.9 Score=38.43 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=47.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|--.. ..++++|++.+. .+.+|+- || -+++-+.+|. +||||.
T Consensus 223 ea~~~gaDiI~LDn~s~------e~~~~av~~~~~-~~~ieaS----GG--------------I~~~ni~~yA-~tGVD~ 276 (296)
T PRK09016 223 QALKAGADIIMLDNFTT------EQMREAVKRTNG-RALLEVS----GN--------------VTLETLREFA-ETGVDF 276 (296)
T ss_pred HHHHcCCCEEEeCCCCh------HHHHHHHHhhcC-CeEEEEE----CC--------------CCHHHHHHHH-hcCCCE
Confidence 68999999999997553 345666666553 4555553 11 3456777765 999998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDL 104 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~ 104 (192)
+.++- .|.+ .+.+||.+
T Consensus 277 Is~ga-----lths-a~~lD~sl 293 (296)
T PRK09016 277 ISVGA-----LTKH-VQALDLSM 293 (296)
T ss_pred EEeCc-----cccC-CCccceee
Confidence 87653 3554 47788763
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=87.69 E-value=12 Score=30.77 Aligned_cols=117 Identities=19% Similarity=0.161 Sum_probs=77.2
Q ss_pred hhhhcCCCEeE--eeCC---CCCHHHHHHHHHHHHHHHHhCCCeEEE--eccccccCCCCCccccccccCCCHHHHHHHh
Q 029540 2 EAIVLGFDSLM--VDGS---HLPFKDNISHTKYISFLAHSKGMLVEA--ELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM--~D~S---~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--ElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
+|+++|-+-|. ++-+ .-.++++.+.-+++++.|+ |+.+=. |.|.+. + .....|-+-.
T Consensus 77 ~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~---~-----------~~i~~a~ria 140 (203)
T cd00959 77 EAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLT---D-----------EEIIKACEIA 140 (203)
T ss_pred HHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCC---H-----------HHHHHHHHHH
Confidence 68888877544 4544 2356778888899999998 555433 433330 0 0123455556
Q ss_pred hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 75 DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.+-|.|++=.+-|=.. +.-.++-++.+++.++ .++|++.=||-- +.+++.+.+..|...|
T Consensus 141 ~e~GaD~IKTsTG~~~-------~~at~~~v~~~~~~~~-~~v~ik~aGGik-t~~~~l~~~~~g~~ri 200 (203)
T cd00959 141 IEAGADFIKTSTGFGP-------GGATVEDVKLMKEAVG-GRVGVKAAGGIR-TLEDALAMIEAGATRI 200 (203)
T ss_pred HHhCCCEEEcCCCCCC-------CCCCHHHHHHHHHHhC-CCceEEEeCCCC-CHHHHHHHHHhChhhc
Confidence 6789999998865431 1224444555555554 369999999999 7889999999987654
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=87.66 E-value=18 Score=32.17 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=54.0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCC-------------CCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCC
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVH-------------GKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGL 127 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~H-------------G~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~ 127 (192)
+++..+..+-+++.|+|.+.+.-.+.. |.|++ |.+. ++.+.++++.+ ++|++-=||--.
T Consensus 174 ~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG--~~~~~~al~~v~~v~~~~---~ipIig~GGI~s 248 (325)
T cd04739 174 FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS--PAEIRLPLRWIAILSGRV---KASLAASGGVHD 248 (325)
T ss_pred ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC--ccchhHHHHHHHHHHccc---CCCEEEECCCCC
Confidence 466677777788999999987543311 11111 2222 22334444444 699999998887
Q ss_pred CHHHHHHHHhcCCeEeecchHHHH
Q 029540 128 SAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 128 ~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
++| ..+++.+|..=|-++|.+..
T Consensus 249 ~~D-a~e~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 249 AED-VVKYLLAGADVVMTTSALLR 271 (325)
T ss_pred HHH-HHHHHHcCCCeeEEehhhhh
Confidence 766 55556799999999999865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=87.37 E-value=4.5 Score=33.84 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=78.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccC---CCCC--ccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGT---EDGL--TVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~---e~~~--~~~~~~~~~T~peea~~Fv~~ 76 (192)
.+-++||+.|=+.. |++.+ ..++.+++..+|+.|-+--...+.- .... ..+..+.....-+++.++.++
T Consensus 22 ~~~e~G~~~vEl~~---~~~~~---~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (254)
T TIGR03234 22 AAAQAGFTGVEYLF---PYDWD---AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARA 95 (254)
T ss_pred HHHHcCCCEEEecC---CccCC---HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHH
Confidence 35688999998865 44444 4667778889999887642121100 0000 000000011222355667788
Q ss_pred hCCcEEEEecCcCCCCCCCCCC-CCCHHHHHHHHhhhccCCccEEeec--------CCCCCHHHHHHHHh---cCCeEee
Q 029540 77 TDIDALAVCIGNVHGKYPSSGP-NLKLDLLKDLHALSSKKGVLLVLHG--------ASGLSAELIKGCIE---RGVRKFN 144 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p-~ld~~~L~~I~~~~~~~~iPLVlHG--------gSG~~~e~~~~~i~---~Gi~KIN 144 (192)
.|+..+.+-.|..++..+.... +.=.+.|+++.+.....+|.|.++= .-..+.+++.+.++ ..-.+++
T Consensus 96 lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~~~~~~i~ 175 (254)
T TIGR03234 96 LGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVGRENLKLQ 175 (254)
T ss_pred hCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhCCCCEeEe
Confidence 8999888766654433211000 1112345666555555689999972 22345566666553 3567888
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+++.-..
T Consensus 176 ~D~~h~~ 182 (254)
T TIGR03234 176 YDLYHMQ 182 (254)
T ss_pred eehhhhh
Confidence 8876543
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=87.35 E-value=8.2 Score=33.55 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCHHHHHHHhhhhCCcEEE---EecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 65 TDVNQAEEFIDETDIDALA---VCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LA---vaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
-||--|++ +++-||.++= --||+-.|.- +...|+.|.+.. ++|+++-+|-|.|.+ ...+.++|..
T Consensus 132 ~D~v~akr-L~d~GcaavMPlgsPIGSg~Gi~-------n~~~l~~i~~~~---~vPvIvDAGiG~pSd-aa~AMElG~d 199 (247)
T PF05690_consen 132 DDPVLAKR-LEDAGCAAVMPLGSPIGSGRGIQ-------NPYNLRIIIERA---DVPVIVDAGIGTPSD-AAQAMELGAD 199 (247)
T ss_dssp S-HHHHHH-HHHTT-SEBEEBSSSTTT---SS-------THHHHHHHHHHG---SSSBEEES---SHHH-HHHHHHTT-S
T ss_pred CCHHHHHH-HHHCCCCEEEecccccccCcCCC-------CHHHHHHHHHhc---CCcEEEeCCCCCHHH-HHHHHHcCCc
Confidence 35666666 5678887754 4677776653 456688898888 699999999998876 8889999999
Q ss_pred EeecchHHH
Q 029540 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
=|=++|.+.
T Consensus 200 aVLvNTAiA 208 (247)
T PF05690_consen 200 AVLVNTAIA 208 (247)
T ss_dssp EEEESHHHH
T ss_pred eeehhhHHh
Confidence 999999884
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=11 Score=35.99 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=80.8
Q ss_pred CCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCe-EEEeccccccCCCCCccccccccCCCHHHHHHHhh
Q 029540 7 GFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 7 GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
|..-|++-.|.- +.+|+++..++.+++|+..|.. | +. +.||. ..|||+-+.++++
T Consensus 181 ~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v--~f----~~EDa--------~Rtd~efl~~~~~ 246 (503)
T PLN03228 181 KRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDI--QF----GCEDG--------GRSDKEFLCKILG 246 (503)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceE--Ee----ccccc--------cccCHHHHHHHHH
Confidence 556677665543 4688999999999999999863 2 11 22332 4688888777765
Q ss_pred ---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 76 ---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 76 ---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+-|+|.+.+ --.-|.-. |.-=.++++.+++.+... ++||-+|+ ..|+.-...-.|+..|+..|+.
T Consensus 247 ~a~~~Gad~I~l--~DTvG~~t---P~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~ 317 (503)
T PLN03228 247 EAIKAGATSVGI--ADTVGINM---PHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEV 317 (503)
T ss_pred HHHhcCCCEEEE--ecCCCCCC---HHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence 468997644 44444432 443456667777665321 36777765 5688888889999999999874
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.09 E-value=10 Score=32.46 Aligned_cols=115 Identities=20% Similarity=0.270 Sum_probs=83.6
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEE
Q 029540 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALA 83 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 83 (192)
.++|.+-|.||+..-|=-++ --.+++...|..|.-.=|. -+++||+.- ..+.|+|.
T Consensus 95 ~~~Ga~IIA~DaT~R~RP~~--~~~~~i~~~k~~~~l~MAD-------------------~St~ee~l~-a~~~G~D~-- 150 (229)
T COG3010 95 AEAGADIIAFDATDRPRPDG--DLEELIARIKYPGQLAMAD-------------------CSTFEEGLN-AHKLGFDI-- 150 (229)
T ss_pred HHCCCcEEEeecccCCCCcc--hHHHHHHHhhcCCcEEEec-------------------cCCHHHHHH-HHHcCCcE--
Confidence 56899999999988865554 3456666666555444333 245566654 66889997
Q ss_pred EecCcCCCCCCCC---CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 84 VCIGNVHGKYPSS---GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 84 vaiGt~HG~y~~~---~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|||.--.|.+. .-.-||++++++.+ . ++|+.--|.--.| ++.+++++.|+.-|=|++.+
T Consensus 151 --IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~---~~~vIAEGr~~tP-~~Ak~a~~~Ga~aVvVGsAI 212 (229)
T COG3010 151 --IGTTLSGYTGYTEKPTEPDFQLVKQLSD-A---GCRVIAEGRYNTP-EQAKKAIEIGADAVVVGSAI 212 (229)
T ss_pred --EecccccccCCCCCCCCCcHHHHHHHHh-C---CCeEEeeCCCCCH-HHHHHHHHhCCeEEEECccc
Confidence 57776667651 23469999999987 3 6888888877655 67999999999999999876
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.97 E-value=6.2 Score=35.56 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=60.5
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..+++.+|++ .++-|+|.+- +.|.-=|.-.+. .+.+. +.++.+|.+.++ .||++.=||-+.+.. +..+..+|-
T Consensus 133 ~v~~~~~A~~-~~~~G~d~vI-~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~--~iPViAAGGI~dg~~-i~AAlalGA 207 (336)
T COG2070 133 SVITVREALK-AERAGADAVI-AQGAEAGGHRGGVDLEVSTFALVPEVVDAVD--GIPVIAAGGIADGRG-IAAALALGA 207 (336)
T ss_pred EeCCHHHHHH-HHhCCCCEEE-ecCCcCCCcCCCCCCCccHHHHHHHHHHHhc--CCCEEEecCccChHH-HHHHHHhcc
Confidence 4689999998 6688999874 456533333221 01111 567788888883 299999999987755 999999999
Q ss_pred eEeecchHHH
Q 029540 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=|.++|.+.
T Consensus 208 ~gVq~GT~Fl 217 (336)
T COG2070 208 DGVQMGTRFL 217 (336)
T ss_pred HHHHhhhhhh
Confidence 9999999884
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=86.93 E-value=4.9 Score=28.29 Aligned_cols=70 Identities=11% Similarity=0.271 Sum_probs=53.5
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..++++++.++++....|.+-+.+.-..+ =-++.++.|++... .+|+++.+.... .+...++.+.|+..
T Consensus 28 ~~~~~~~~~~~~~~~~~d~iiid~~~~~~--------~~~~~~~~i~~~~~--~~~ii~~t~~~~-~~~~~~~~~~g~~~ 96 (112)
T PF00072_consen 28 TASSGEEALELLKKHPPDLIIIDLELPDG--------DGLELLEQIRQINP--SIPIIVVTDEDD-SDEVQEALRAGADD 96 (112)
T ss_dssp EESSHHHHHHHHHHSTESEEEEESSSSSS--------BHHHHHHHHHHHTT--TSEEEEEESSTS-HHHHHHHHHTTESE
T ss_pred EECCHHHHHHHhcccCceEEEEEeeeccc--------cccccccccccccc--cccEEEecCCCC-HHHHHHHHHCCCCE
Confidence 35789999999999999999998544431 13577889987763 699999996665 56688888999764
Q ss_pred e
Q 029540 143 F 143 (192)
Q Consensus 143 I 143 (192)
+
T Consensus 97 ~ 97 (112)
T PF00072_consen 97 Y 97 (112)
T ss_dssp E
T ss_pred E
Confidence 3
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=5.8 Score=33.61 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGA 124 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGg 124 (192)
-+.+++.+.+++-|.|.+=+.+++-|... .+.++.+.++++++...+.++. ++.|+.
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~~~~---~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~ 71 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQQWK---RKPLEELNIEAFKAACEKYGISPEDILVHAP 71 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCc---CCCCCHHHHHHHHHHHHHcCCCCCceEEecc
Confidence 34578888888888888888887776432 1456666777777766555555 777775
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=86.67 E-value=17 Score=32.02 Aligned_cols=132 Identities=10% Similarity=0.061 Sum_probs=79.3
Q ss_pred hhhhcCCCEeEe-eC---------------CCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC
Q 029540 2 EAIVLGFDSLMV-DG---------------SHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~---------------S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T 65 (192)
+.+++|..-|.+ |. ..+|.+|-+++.+.+++....-++.|=|=.-..-. -.
T Consensus 100 ~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-------------~~ 166 (285)
T TIGR02320 100 KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-------------GK 166 (285)
T ss_pred HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-------------cC
Confidence 457889999999 53 24688998888887776643323333222111100 01
Q ss_pred CHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 66 DVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..++|.+- ..+-|.|++-|- + +..+.+-++++.+.++. .++||++..+. .|.-.++++-++|+
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~-------~----~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~-~~~~~~~eL~~lG~ 234 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIH-------S----RKKDPDEILEFARRFRNHYPRTPLVIVPTS-YYTTPTDEFRDAGI 234 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-------C----CCCCHHHHHHHHHHhhhhCCCCCEEEecCC-CCCCCHHHHHHcCC
Confidence 23444332 336899999874 1 11244556666555531 14799876542 22224677777899
Q ss_pred eEeecchHHHHHHHHHhc
Q 029540 141 RKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 141 ~KINi~T~l~~a~~~~~~ 158 (192)
+.|-+++.+..+.+.+++
T Consensus 235 ~~v~~~~~~~~aa~~a~~ 252 (285)
T TIGR02320 235 SVVIYANHLLRAAYAAMQ 252 (285)
T ss_pred CEEEEhHHHHHHHHHHHH
Confidence 999999888888877765
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=10 Score=32.82 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=68.3
Q ss_pred hhhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
..++.|.+.+.+=|| .|+.+|-.+..+.+++.+.. .+.|=+=+|.. ...+.-+-.+.+++
T Consensus 30 ~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~--------------~~~~~i~~a~~a~~ 94 (292)
T PRK03170 30 YLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPVIAGTGSN--------------STAEAIELTKFAEK 94 (292)
T ss_pred HHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcEEeecCCc--------------hHHHHHHHHHHHHH
Confidence 457889999998888 58999999999999998752 23332111110 00111223344667
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
.|+|.+.+.--. |....++==++-.++|.+.+ ++|+++. -|..++.+.+++..+.
T Consensus 95 ~G~d~v~~~pP~----~~~~~~~~i~~~~~~ia~~~---~~pv~lYn~P~~~g~~l~~~~~~~L~~~ 154 (292)
T PRK03170 95 AGADGALVVTPY----YNKPTQEGLYQHFKAIAEAT---DLPIILYNVPGRTGVDILPETVARLAEH 154 (292)
T ss_pred cCCCEEEECCCc----CCCCCHHHHHHHHHHHHhcC---CCCEEEEECccccCCCCCHHHHHHHHcC
Confidence 899988875321 21101111122234454444 6999998 4566888888888654
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.44 E-value=4 Score=34.69 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=52.1
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+..+..+.+++.|+|.|-+ |..|++ +..|++.+++++ + ++|++-=|+-- +.++..+++.+|..=|-+
T Consensus 153 ~~~~la~~l~~aG~d~ihv-----~~~~~g--~~ad~~~I~~i~--~---~ipVIgnGgI~-s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 153 DDEELARLIEKAGADIIHV-----DAMDPG--NHADLKKIRDIS--T---ELFIIGNNSVT-TIESAKEMFSYGADMVSV 219 (233)
T ss_pred CHHHHHHHHHHhCCCEEEE-----CcCCCC--CCCcHHHHHHhc--C---CCEEEEECCcC-CHHHHHHHHHcCCCEEEE
Confidence 3445556688899998754 455653 567899888886 4 69999877655 446688888999888888
Q ss_pred chH
Q 029540 146 NTE 148 (192)
Q Consensus 146 ~T~ 148 (192)
++.
T Consensus 220 GR~ 222 (233)
T cd02911 220 ARA 222 (233)
T ss_pred cCC
Confidence 876
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=86.28 E-value=18 Score=32.10 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCC-------------CCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHG-------------KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG-------------~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
++++.+..+.+++.|+|.+.+.-.+... .|+ .|.+...-|+.|++..+..++|+.-=||--.++|
T Consensus 176 ~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~gls--g~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D 253 (334)
T PRK07565 176 FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLS--TPAELRLPLRWIAILSGRVGADLAATTGVHDAED 253 (334)
T ss_pred chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCC--CchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 3566777777889999999875332111 011 1222222233333332223699998887766655
Q ss_pred HHHHHHhcCCeEeecchHHHH
Q 029540 131 LIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~ 151 (192)
..+++.+|..=|-++|.+..
T Consensus 254 -a~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 254 -VIKMLLAGADVVMIASALLR 273 (334)
T ss_pred -HHHHHHcCCCceeeehHHhh
Confidence 77777899999999999876
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.6 Score=38.61 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=40.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+.||+| .++.++ .++++++.+. -++.+|+- || -+++.+.+|. +|||
T Consensus 204 ea~~agaDiI~LD--n~~~e~----l~~av~~~~~~~~~~~leaS----GG--------------I~~~ni~~yA-~tGv 258 (284)
T PRK06096 204 AALRAQPDVLQLD--KFSPQQ----ATEIAQIAPSLAPHCTLSLA----GG--------------INLNTLKNYA-DCGI 258 (284)
T ss_pred HHHHcCCCEEEEC--CCCHHH----HHHHHHHhhccCCCeEEEEE----CC--------------CCHHHHHHHH-hcCC
Confidence 6899999999999 455443 4566666653 24555543 11 3456777766 8999
Q ss_pred cEEEEecCcCC
Q 029540 80 DALAVCIGNVH 90 (192)
Q Consensus 80 D~LAvaiGt~H 90 (192)
|.+ ++|..|
T Consensus 259 D~I--s~gal~ 267 (284)
T PRK06096 259 RLF--ITSAPY 267 (284)
T ss_pred CEE--EECccc
Confidence 998 556553
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=7.9 Score=34.19 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=76.2
Q ss_pred hcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH-HHHHhh-------h
Q 029540 5 VLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ-AEEFID-------E 76 (192)
Q Consensus 5 ~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee-a~~Fv~-------~ 76 (192)
++|.++| +|.+..-+--|+...+++.+ +-|+.|=+--|.-- +...... -.-.++++ |..|++ .
T Consensus 45 ~~Gg~ti-Vd~T~~g~GRd~~~l~~is~---~tgv~Iv~~TG~y~--~~~~p~~---~~~~~~e~la~~~i~ei~~Gi~g 115 (292)
T PRK09875 45 TRGVRNV-IEMTNRYMGRNAQFMLDVMR---ETGINVVACTGYYQ--DAFFPEH---VATRSVQELAQEMVDEIEQGIDG 115 (292)
T ss_pred HhCCCeE-EecCCCccCcCHHHHHHHHH---HhCCcEEEcCcCCC--CccCCHH---HhcCCHHHHHHHHHHHHHHhhcc
Confidence 4577766 78888878777776665544 45677666555432 1111100 01123333 555554 4
Q ss_pred hCCcEEEE-ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC-CCHHHHHHHHhcCC--eEeecc
Q 029540 77 TDIDALAV-CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-LSAELIKGCIERGV--RKFNVN 146 (192)
Q Consensus 77 TgvD~LAv-aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG-~~~e~~~~~i~~Gi--~KINi~ 146 (192)
|||-+=.+ =||+.-|...+ ...+.|+....+..+++.|+..|-+.| .+.++++.+.+.|+ .||-++
T Consensus 116 t~ikaGvIGeiG~~~~~it~----~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~ 185 (292)
T PRK09875 116 TELKAGIIAEIGSSEGKITP----LEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVG 185 (292)
T ss_pred CCCcccEEEEEecCCCCCCH----HHHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEe
Confidence 66544445 56666553322 233445554444445689999996666 77889999999999 888764
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=86.19 E-value=18 Score=30.79 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=88.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCc-------------c------------
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-------------V------------ 57 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~-------------~------------ 57 (192)
|.+.|.+-+|+=||.--- +++..|.++++.... .++|=-|.|.......+.. .
T Consensus 21 ~~~~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~ 98 (219)
T cd02812 21 AEESGTDAIMVGGSDGVS-STLDNVVRLIKRIRR-PVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQAEAAPE 98 (219)
T ss_pred HHhcCCCEEEECCccchh-hhHHHHHHHHHHhcC-CCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHHHHHHHHH
Confidence 455899999999998332 777777666666555 6888878887653111000 0
Q ss_pred ------------------------c--cccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-CCCCCCHHHHHHHHh
Q 029540 58 ------------------------E--DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPS-SGPNLKLDLLKDLHA 110 (192)
Q Consensus 58 ------------------------~--~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~ 110 (192)
. .......+|+++..|..... -+| .|=+|-. .....+.+.++++++
T Consensus 99 ~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae------~~g-~~ivyLe~SG~~~~~e~I~~v~~ 171 (219)
T cd02812 99 VGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAE------YLG-MPIVYLEYSGAYGPPEVVRAVKK 171 (219)
T ss_pred hccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHH------HcC-CeEEEeCCCCCcCCHHHHHHHHH
Confidence 0 00011356777766654321 244 5544422 124478999999998
Q ss_pred hhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 111 LSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 111 ~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.+. ++||..=||- -+.|+.+++.++|..+|-++|.+-.
T Consensus 172 ~~~--~~pl~vGGGI-rs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 172 VLG--DTPLIVGGGI-RSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred hcC--CCCEEEeCCC-CCHHHHHHHHHcCCCEEEECchhhC
Confidence 763 4999995533 3668899999999999999998753
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.17 E-value=2.6 Score=36.89 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=57.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEe--------c-------------CcCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEE
Q 029540 65 TDVNQAEEFIDETDIDALAVC--------I-------------GNVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLV 120 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva--------i-------------Gt~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLV 120 (192)
++..+..+-+++.|+|.+.+. + .|.+|.|.+ |.+ .++.+.++++.+. .++|++
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG--~a~~p~~l~~v~~~~~~~~-~~ipIi 256 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG--PAVKPIALRAVSQIARAPE-PGLPIS 256 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccC--CCcchHHHHHHHHHHHhcC-CCCcEE
Confidence 344444444668899998742 1 456778875 333 4777888887772 149999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 121 LHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-=||--..++ +.+++.+|..=|-++|.+.
T Consensus 257 g~GGI~~~~d-a~~~l~aGA~~V~i~ta~~ 285 (299)
T cd02940 257 GIGGIESWED-AAEFLLLGASVVQVCTAVM 285 (299)
T ss_pred EECCCCCHHH-HHHHHHcCCChheEceeec
Confidence 9998776655 6667789999999998874
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=86.08 E-value=3.6 Score=38.07 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=73.6
Q ss_pred hhh-cCCC-EeEeeCC-------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccc------------cccC--C--CCCcc
Q 029540 3 AIV-LGFD-SLMVDGS-------HLPFKDNISHTKYISFLAHSKGMLVEAELGR------------LSGT--E--DGLTV 57 (192)
Q Consensus 3 ai~-~GFt-SVM~D~S-------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~------------i~g~--e--~~~~~ 57 (192)
+++ .|+. .+++|+- .++.++=++.-+++-+.+.++++.+|.=+-. +-.. + -....
T Consensus 221 ~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI 300 (408)
T TIGR01502 221 KLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEI 300 (408)
T ss_pred HhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 454 5665 8999998 4577777776677766666788899965521 1100 0 01111
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029540 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
...| ..++++++++|++.-.+|.+-+=+..+=|.+. ..+|.+.....++|..+||..
T Consensus 301 ~aDE-s~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~----------a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 301 VADE-WCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNN----------IARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred EecC-CCCCHHHHHHHHHhCCCCEEEeCccccCCHHH----------HHHHHHHHHHcCCEEEEeCCC
Confidence 1122 46889999999999999999998776655543 244555544458999999854
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=22 Score=30.88 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=81.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|.+.|.+= .||+|| ..++.+.|+++|+. +..+- ..-|+++..+...+...=-.
T Consensus 114 ~~~~aGvdgviip--DLP~ee----~~~~~~~~~~~gi~----~I~lv------------~PtT~~eri~~i~~~a~gFI 171 (263)
T CHL00200 114 KISQAGVKGLIIP--DLPYEE----SDYLISVCNLYNIE----LILLI------------APTSSKSRIQKIARAAPGCI 171 (263)
T ss_pred HHHHcCCeEEEec--CCCHHH----HHHHHHHHHHcCCC----EEEEE------------CCCCCHHHHHHHHHhCCCcE
Confidence 5788999988874 467766 66889999998862 23321 12355666777776665334
Q ss_pred EEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
..||. -|..-. ...+. .+.++++++.+ +.|+++ |=|++ .|+++++...|..=+=++|.+-+.+.
T Consensus 172 Y~vS~---~GvTG~-~~~~~~~~~~~i~~ir~~t---~~Pi~v--GFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 172 YLVST---TGVTGL-KTELDKKLKKLIETIKKMT---NKPIIL--GFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EEEcC---CCCCCC-CccccHHHHHHHHHHHHhc---CCCEEE--ECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 44442 222211 12232 23455666655 699999 56887 89999999999999999999977664
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.79 E-value=6.8 Score=36.71 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=76.3
Q ss_pred hhhhcCCCEe-EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH----HHHHHHhhh
Q 029540 2 EAIVLGFDSL-MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV----NQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSV-M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p----eea~~Fv~~ 76 (192)
+|++.|-+.+ -||+ |..--|++ ..++.++.+|..+-+.|-.--. ..-+. +-|++ +.+
T Consensus 106 ka~~nGidvfRiFDA--lND~RNl~---~ai~a~kk~G~h~q~~i~YT~s------------PvHt~e~yv~~ake-l~~ 167 (472)
T COG5016 106 KAAENGIDVFRIFDA--LNDVRNLK---TAIKAAKKHGAHVQGTISYTTS------------PVHTLEYYVELAKE-LLE 167 (472)
T ss_pred HHHhcCCcEEEechh--ccchhHHH---HHHHHHHhcCceeEEEEEeccC------------CcccHHHHHHHHHH-HHH
Confidence 4566665554 3564 33344554 4456667778766555433210 01112 33444 447
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEee
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.|||++++ =-+-|.- .|.--+++++.|++.+ ++|+.|| -.||++.--+-+|++.|+--|-
T Consensus 168 ~g~DSIci--KDmaGll---tP~~ayelVk~iK~~~---~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 168 MGVDSICI--KDMAGLL---TPYEAYELVKAIKKEL---PVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred cCCCEEEe--ecccccC---ChHHHHHHHHHHHHhc---CCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 89998875 3444443 4777899999999998 6888875 6899999999999999998764
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=85.59 E-value=23 Score=30.65 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=68.9
Q ss_pred hhhhc-CCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHH
Q 029540 2 EAIVL-GFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEE 72 (192)
Q Consensus 2 ~ai~~-GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~ 72 (192)
..++. |.+.|++=|| .|+.+|-.+.++.+++.+.. .+.| |.|... ++.++ ..+
T Consensus 29 ~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-~~~v------iagv~~-----------~~~~~ai~~a~ 90 (288)
T cd00954 29 YLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-KVTL------IAHVGS-----------LNLKESQELAK 90 (288)
T ss_pred HHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCeE------EeccCC-----------CCHHHHHHHHH
Confidence 35677 9999999888 57889999999998888753 2333 222211 22233 344
Q ss_pred HhhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHh
Q 029540 73 FIDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIE 137 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~ 137 (192)
++++.|+|++.+.-= .|- .....+ ++-.++|.+.+. ++|+++. .|..++.+.+.+..+
T Consensus 91 ~a~~~Gad~v~~~~P----~y~~~~~~~i-~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 91 HAEELGYDAISAITP----FYYKFSFEEI-KDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHcCCCEEEEeCC----CCCCCCHHHH-HHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 567899999876421 121 110111 223344544441 5899987 688899999988875
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >TIGR01418 PEP_synth phosphoenolpyruvate synthase | Back alignment and domain information |
|---|
Probab=85.58 E-value=5.9 Score=39.59 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=85.0
Q ss_pred hhh-hcCCCE--eEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH---HHHHHHhh
Q 029540 2 EAI-VLGFDS--LMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---NQAEEFID 75 (192)
Q Consensus 2 ~ai-~~GFtS--VM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---eea~~Fv~ 75 (192)
+|+ ++|+.. ||| |+=.+.+..+++++.++..|... .++... ...+.-+| +.+.++++
T Consensus 621 ral~d~G~~~~~Im~-----PmV~s~eE~~~~~~~~~~~g~~~---------~~~~~~---vg~mIEtp~av~~~d~Ia~ 683 (782)
T TIGR01418 621 RVREEMGLTNVEVMI-----PFVRTPEEGKRALEIMAEEGLRR---------GKNGLE---VYVMCEVPSNALLADEFAK 683 (782)
T ss_pred HHHHhcCCCCeEEEe-----cCCCCHHHHHHHHHHHHHhCccc---------cccCcE---EEEEECcHHHHHHHHHHHH
Confidence 566 789988 886 88888888888889888766331 111111 11233344 45667776
Q ss_pred hhCCcEEEEecCcC------CCCCCCC------CCCCCHHHHHHHHh---hhccCCccEEeecCCC-CCHHHHHHHHhcC
Q 029540 76 ETDIDALAVCIGNV------HGKYPSS------GPNLKLDLLKDLHA---LSSKKGVLLVLHGASG-LSAELIKGCIERG 139 (192)
Q Consensus 76 ~TgvD~LAvaiGt~------HG~y~~~------~p~ld~~~L~~I~~---~~~~~~iPLVlHGgSG-~~~e~~~~~i~~G 139 (192)
. ||++. |||. -|....+ ....+...++.|+. ..++.++|+-++|.-+ .+++.+...+..|
T Consensus 684 ~--vDfis--IGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G 759 (782)
T TIGR01418 684 E--FDGFS--IGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEG 759 (782)
T ss_pred h--CCEEE--ECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcC
Confidence 6 99765 4543 2221100 12235555555554 4444689999988644 3778899999999
Q ss_pred CeEeecchHHHHHHHHHh
Q 029540 140 VRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 140 i~KINi~T~l~~a~~~~~ 157 (192)
+..+.++.+..-.....+
T Consensus 760 ~~~ls~~~d~~~~~k~~i 777 (782)
T TIGR01418 760 IDSISLNPDAVLRTRLQV 777 (782)
T ss_pred CCEEEECcchHHHHHHHH
Confidence 999999988765554444
|
Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=85.57 E-value=5.3 Score=33.96 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=78.1
Q ss_pred hhhhcCCCEe--EeeCCCCCH--HHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029540 2 EAIVLGFDSL--MVDGSHLPF--KDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSV--M~D~S~l~~--eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
.|-++||+.| .+|.+..-. ...-...+++.+.+.++ ++.+-...+....-.+.. .+.....+..-..+.++.++
T Consensus 18 ~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~r~~~~~~~~~~i~~A~~ 96 (279)
T cd00019 18 RAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPD-KEKREKSIERLKDEIERCEE 96 (279)
T ss_pred HHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 4668899998 445442210 00113445666666666 666555444322111110 01112345556778888889
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CC----CCCHHHHHHHHh----cCCeEeecc
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--AS----GLSAELIKGCIE----RGVRKFNVN 146 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gS----G~~~e~~~~~i~----~Gi~KINi~ 146 (192)
.|++.+.+-.|..-+......-..=.+.|+++.+.....+|.|+++= .. ..+.+++.+.++ .--.+++++
T Consensus 97 lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD 176 (279)
T cd00019 97 LGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCID 176 (279)
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEE
Confidence 99998766444321100000001123555666665555689999954 33 234455666554 456888888
Q ss_pred hHHHH
Q 029540 147 TEVRK 151 (192)
Q Consensus 147 T~l~~ 151 (192)
+.-..
T Consensus 177 ~~h~~ 181 (279)
T cd00019 177 TCHIF 181 (279)
T ss_pred hhhHH
Confidence 76643
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PRK06464 phosphoenolpyruvate synthase; Validated | Back alignment and domain information |
|---|
Probab=85.56 E-value=5.9 Score=39.73 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=87.2
Q ss_pred hhhh-cCCCE--eEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH---HHHHHHhh
Q 029540 2 EAIV-LGFDS--LMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---NQAEEFID 75 (192)
Q Consensus 2 ~ai~-~GFtS--VM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---eea~~Fv~ 75 (192)
+|++ +|+.. ||| |+=.+.+..+++++.++..|.. ..++... ...+.-+| +.+.++++
T Consensus 628 rald~~G~~~~~Imv-----PmV~s~eEa~~~~~~~~~~g~~---------~~~~~~~---vg~MIEtp~av~~~deIa~ 690 (795)
T PRK06464 628 RVREEMGLTNVEVMI-----PFVRTVEEAEKVIELLAENGLK---------RGENGLK---VIMMCEIPSNALLAEEFLE 690 (795)
T ss_pred HHHHhcCCCCeEEEe-----cCCCCHHHHHHHHHHHHHhCcc---------ccccCcE---EEEEEcCHHHHHHHHHHHH
Confidence 5777 78877 886 8888888888888888865432 1111111 12233444 45667776
Q ss_pred hhCCcEEEEecC--c--CCCCCCCC------CCCCCHHHHHHHHhh---hccCCccEEeecCCCCC-HHHHHHHHhcCCe
Q 029540 76 ETDIDALAVCIG--N--VHGKYPSS------GPNLKLDLLKDLHAL---SSKKGVLLVLHGASGLS-AELIKGCIERGVR 141 (192)
Q Consensus 76 ~TgvD~LAvaiG--t--~HG~y~~~------~p~ld~~~L~~I~~~---~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~ 141 (192)
. ||++.|.-. + .-|....+ ....+...++.|+.. .+..++|+-++|-..-. ++.+...+..|+.
T Consensus 691 ~--vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~ 768 (795)
T PRK06464 691 Y--FDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGID 768 (795)
T ss_pred h--CCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCC
Confidence 6 997764332 1 13321100 122355666666543 44457999998855555 6889999999999
Q ss_pred EeecchHHHHHHHHHhc
Q 029540 142 KFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 142 KINi~T~l~~a~~~~~~ 158 (192)
.+.++.+........++
T Consensus 769 ~ls~~~d~~~~~k~~i~ 785 (795)
T PRK06464 769 SISLNPDAVVDTWLAVA 785 (795)
T ss_pred EEEEcchhHHHHHHHHH
Confidence 99999998766665554
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.53 E-value=7.6 Score=32.42 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|+|+.+ ..+.|+|.+.+ |+. ..+-++.|+.++.... .++|+|-=| |++.+++....+.|+.=+=
T Consensus 112 ~t~~E~~~-A~~~Gad~vk~--------Fpa--~~~G~~~l~~l~~~~~-~~ipvvaiG--GI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 112 ATPTEAFA-ALRAGAQALKL--------FPA--SQLGPAGIKALRAVLP-PDVPVFAVG--GVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred CCHHHHHH-HHHcCCCEEEE--------CCC--CCCCHHHHHHHHhhcC-CCCeEEEEC--CCCHHHHHHHHHCCCeEEE
Confidence 57788776 44679999985 553 4477888898887762 139999999 7899999999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+.+.+..
T Consensus 178 v~s~l~~ 184 (206)
T PRK09140 178 LGSALYR 184 (206)
T ss_pred EehHhcc
Confidence 9999854
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=6.6 Score=35.28 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=58.0
Q ss_pred cCCCHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 63 KLTDVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 63 ~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
.+-+|||..+.++ +.|+.-+- +|+. .. +.+..+++.+.++-+.+++.+++++++=| .++.+++++..+.|
T Consensus 74 ~~ls~eEI~~~a~~~~~~G~~~i~--i~~~---g~-~p~~~~~e~i~~~i~~ik~~~i~v~~s~G-~ls~e~l~~LkeAG 146 (345)
T PRK15108 74 RLMEVEQVLESARKAKAAGSTRFC--MGAA---WK-NPHERDMPYLEQMVQGVKAMGLETCMTLG-TLSESQAQRLANAG 146 (345)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEE--EEec---CC-CCCcchHHHHHHHHHHHHhCCCEEEEeCC-cCCHHHHHHHHHcC
Confidence 3579999888876 46887763 3332 11 12456677776665555444566665533 68999999999999
Q ss_pred CeEeecchHHHHHHHHHh
Q 029540 140 VRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 140 i~KINi~T~l~~a~~~~~ 157 (192)
+..+|++=+....+...+
T Consensus 147 ld~~n~~leT~p~~f~~I 164 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNI 164 (345)
T ss_pred CCEEeeccccChHhcCCC
Confidence 999999655544443333
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=18 Score=30.98 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+.+++|.+-|.+-...++ |....+++.++..+.=+++-.-=|.+-- . .+. +..-.+|.+..+.+++-|+.-
T Consensus 90 ~~l~~Ga~rvvigT~a~~---~p~~l~~~~~~~~~ivvslD~k~g~v~~-~----gw~-~~~~~~~~e~~~~~~~~g~~~ 160 (241)
T PRK14114 90 KLRKLGYRRQIVSSKVLE---DPSFLKFLKEIDVEPVFSLDTRGGKVAF-K----GWL-AEEEIDPVSLLKRLKEYGLEE 160 (241)
T ss_pred HHHHCCCCEEEECchhhC---CHHHHHHHHHhCCCEEEEEEccCCEEee-C----CCe-ecCCCCHHHHHHHHHhcCCCE
Confidence 467889999888555543 4445555533322211333332232210 0 010 123357888777788888755
Q ss_pred EEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-----C-CeEeecchHH
Q 029540 82 LAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-----G-VRKFNVNTEV 149 (192)
Q Consensus 82 LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-----G-i~KINi~T~l 149 (192)
+=+. |... |.. .-.|+++++++.+.+ ++|+.-=||-+..+| |.++.+. | +.-+=+++.|
T Consensus 161 ii~tdI~rd-Gt~----~G~d~el~~~l~~~~---~~pviasGGv~s~~D-l~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 161 IVHTEIEKD-GTL----QEHDFSLTRKIAIEA---EVKVFAAGGISSENS-LKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred EEEEeechh-hcC----CCcCHHHHHHHHHHC---CCCEEEECCCCCHHH-HHHHHhcccccCCcEEEEEEehHH
Confidence 5443 4322 222 225899999999887 699999999887655 7777775 5 8888888876
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=85.01 E-value=15 Score=31.96 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.--|+.+-.++.. .++.+++. +..++.|. .+++|+.+.+ +.|+|.+.+
T Consensus 151 ~d~ilikdnHi~~~g~~~~---~v~~~r~~~~~~~~I~vev-------------------~t~eea~~A~-~~gaD~I~l 207 (269)
T cd01568 151 SDAVLIKDNHIAAAGGITE---AVKRARAAAPFEKKIEVEV-------------------ETLEEAEEAL-EAGADIIML 207 (269)
T ss_pred cceeeecHhHHHHhCCHHH---HHHHHHHhCCCCCeEEEec-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 6789988888776666553 33444432 23344431 3467888876 468998886
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
||+ ..+.++++.+..+. .++|++.=| |+..+.+....+.|+.=|=++..
T Consensus 208 --d~~-----------~~e~l~~~v~~i~~~~~i~i~asG--GIt~~ni~~~a~~Gad~Isvgal 257 (269)
T cd01568 208 --DNM-----------SPEELKEAVKLLKGLPRVLLEASG--GITLENIRAYAETGVDVISTGAL 257 (269)
T ss_pred --CCC-----------CHHHHHHHHHHhccCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEEcHH
Confidence 332 23556665555432 258999988 78899999999999988876543
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=84.96 E-value=11 Score=32.71 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=67.9
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.--|+.+--++.. -++.+++. +..++.|. .+++|+++.+ +.|+|.+.+
T Consensus 152 ~d~vlikdnHi~~~g~i~~---~v~~~r~~~~~~~~Igvev-------------------~s~eea~~A~-~~gaDyI~l 208 (268)
T cd01572 152 SDAVLIKDNHIAAAGSITE---AVRRARAAAPFTLKIEVEV-------------------ETLEQLKEAL-EAGADIIML 208 (268)
T ss_pred cceeeeehHHHHHhCCHHH---HHHHHHHhCCCCCeEEEEE-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 5688888777766555522 23333332 23344431 2457888865 689999876
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
||+ .++.|+++.+..+. ++|++-=| |+..+.+....+.|+.=|=+++.
T Consensus 209 --d~~-----------~~e~l~~~~~~~~~-~ipi~AiG--GI~~~ni~~~a~~Gvd~Iav~sl 256 (268)
T cd01572 209 --DNM-----------SPEELREAVALLKG-RVLLEASG--GITLENIRAYAETGVDYISVGAL 256 (268)
T ss_pred --CCc-----------CHHHHHHHHHHcCC-CCcEEEEC--CCCHHHHHHHHHcCCCEEEEEee
Confidence 333 35667777665532 48999999 78899999999999988777654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=3 Score=36.85 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=46.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|--.. +..++.+++.+.. ..+|+- | =-+++.+.+|. +||||.
T Consensus 209 ea~~~gaDiI~LDn~s~------e~l~~av~~~~~~-~~leaS----G--------------GI~~~ni~~yA-~tGVD~ 262 (281)
T PRK06106 209 EALELGVDAVLLDNMTP------DTLREAVAIVAGR-AITEAS----G--------------RITPETAPAIA-ASGVDL 262 (281)
T ss_pred HHHHcCCCEEEeCCCCH------HHHHHHHHHhCCC-ceEEEE----C--------------CCCHHHHHHHH-hcCCCE
Confidence 68999999999996433 4566777766543 335443 1 13457778876 899998
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+.++ . .|.+ .|.+||.
T Consensus 263 Is~G--a---lths-a~~~Dis 278 (281)
T PRK06106 263 ISVG--W---LTHS-APVLDIG 278 (281)
T ss_pred EEeC--h---hhcC-CCccccc
Confidence 7665 3 3443 3667775
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=84.63 E-value=20 Score=31.66 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.4
Q ss_pred CHHHHHHHHhhhccCCccE--Eee--cCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029540 101 KLDLLKDLHALSSKKGVLL--VLH--GASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 101 d~~~L~~I~~~~~~~~iPL--VlH--GgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+.+-++++.+.+ ++|| .+- |.+ |.-.++++-++|++-|-++..+..+...+++
T Consensus 185 ~~e~i~~~~~~i---~~Pl~~n~~~~~~~--p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~ 241 (285)
T TIGR02317 185 SLEEFRQFAKAV---KVPLLANMTEFGKT--PLFTADELREAGYKMVIYPVTAFRAMNKAAE 241 (285)
T ss_pred CHHHHHHHHHhc---CCCEEEEeccCCCC--CCCCHHHHHHcCCcEEEEchHHHHHHHHHHH
Confidence 456666666666 6888 343 433 3334666677799999999999888888775
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=13 Score=32.41 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=53.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..||.+|.+-+.+.|+|-+==| |.-+ ...-.+++|+++.+... + .+ +==|+|+..+.+.+....|+.-+
T Consensus 127 ~~d~~~al~~l~~lG~~rILTS-----Gg~~--~a~~g~~~L~~lv~~a~--~-~~-Im~GgGV~~~Nv~~l~~tG~~~~ 195 (248)
T PRK11572 127 CANPLNALKQLADLGVARILTS-----GQQQ--DAEQGLSLIMELIAASD--G-PI-IMAGAGVRLSNLHKFLDAGVREV 195 (248)
T ss_pred cCCHHHHHHHHHHcCCCEEECC-----CCCC--CHHHHHHHHHHHHHhcC--C-CE-EEeCCCCCHHHHHHHHHcCCCEE
Confidence 4689999999999999876533 3322 13345777888877653 3 34 44567999999999999999999
Q ss_pred ecch
Q 029540 144 NVNT 147 (192)
Q Consensus 144 Ni~T 147 (192)
+.+.
T Consensus 196 H~s~ 199 (248)
T PRK11572 196 HSSA 199 (248)
T ss_pred eeCC
Confidence 8654
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=3.6 Score=36.14 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=47.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+-||+| .++.| ..++++++.+ -.+.||+= || -+++.+.+|. +||||.
T Consensus 204 eA~~~gaD~I~LD--~~~~e----~l~~~v~~~~-~~i~leAs----GG--------------It~~ni~~~a-~tGvD~ 257 (277)
T PRK05742 204 QALAAGADIVMLD--ELSLD----DMREAVRLTA-GRAKLEAS----GG--------------INESTLRVIA-ETGVDY 257 (277)
T ss_pred HHHHcCCCEEEEC--CCCHH----HHHHHHHHhC-CCCcEEEE----CC--------------CCHHHHHHHH-HcCCCE
Confidence 6889999999998 45555 4555555543 24666653 21 3467778876 799999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDL 104 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~ 104 (192)
++++- .|.+ .|.+||.+
T Consensus 258 Isvg~-----lt~s-~~~~D~sl 274 (277)
T PRK05742 258 ISIGA-----MTKD-VKAVDLSM 274 (277)
T ss_pred EEECh-----hhcC-Ccccceee
Confidence 98763 3444 47788763
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=3 Score=36.77 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=47.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+|+++|.+.||+|--. .+..++++++.++.+ +.+|+- || -+++.+.+|. +|
T Consensus 197 ~a~~agaDiI~LDn~~------~e~l~~~v~~l~~~~~~~~~~leaS----GG--------------I~~~ni~~yA-~t 251 (278)
T PRK08385 197 KAAKAGADIIMLDNMT------PEEIREVIEALKREGLRERVKIEVS----GG--------------ITPENIEEYA-KL 251 (278)
T ss_pred HHHHcCcCEEEECCCC------HHHHHHHHHHHHhcCcCCCEEEEEE----CC--------------CCHHHHHHHH-Hc
Confidence 6899999999999763 446677777766533 444443 11 2567778866 79
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|||.+.++ . .|.+ .|.+||.
T Consensus 252 GvD~Is~g--a---lt~s-a~~~Dis 271 (278)
T PRK08385 252 DVDVISLG--A---LTHS-VRNFDVS 271 (278)
T ss_pred CCCEEEeC--h---hhcC-CCccceE
Confidence 99987665 3 3443 3666664
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=84.13 E-value=16 Score=31.66 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=84.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-.+|-+-|.+=.+.|+-++ .+++.++||.+|..+=.|+ .+.+|+++-+ ..|.+.
T Consensus 126 eA~~~GADaVLLI~~~L~~~~----l~~l~~~a~~lGle~lVEV-------------------h~~~El~~al-~~~a~i 181 (254)
T PF00218_consen 126 EARAAGADAVLLIAAILSDDQ----LEELLELAHSLGLEALVEV-------------------HNEEELERAL-EAGADI 181 (254)
T ss_dssp HHHHTT-SEEEEEGGGSGHHH----HHHHHHHHHHTT-EEEEEE-------------------SSHHHHHHHH-HTT-SE
T ss_pred HHHHcCCCEeehhHHhCCHHH----HHHHHHHHHHcCCCeEEEE-------------------CCHHHHHHHH-HcCCCE
Confidence 466788888888888888765 7899999999998776662 3446666644 779999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.|..-+.| .-.+|+++..+|...+.. + .+.=--||+. .++++++.++|+.=|=|+|.+.
T Consensus 182 iGINnRdL~------tf~vd~~~~~~l~~~ip~-~--~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm 242 (254)
T PF00218_consen 182 IGINNRDLK------TFEVDLNRTEELAPLIPK-D--VIVISESGIKTPEDARRLARAGADAVLVGEALM 242 (254)
T ss_dssp EEEESBCTT------TCCBHTHHHHHHHCHSHT-T--SEEEEESS-SSHHHHHHHCTTT-SEEEESHHHH
T ss_pred EEEeCcccc------CcccChHHHHHHHhhCcc-c--eeEEeecCCCCHHHHHHHHHCCCCEEEECHHHh
Confidence 999877765 367888888888876532 2 3333456665 5889999999999999999986
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=84.12 E-value=24 Score=31.30 Aligned_cols=126 Identities=11% Similarity=0.065 Sum_probs=80.1
Q ss_pred hhhhcCCCEeEe-eCC------------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH
Q 029540 2 EAIVLGFDSLMV-DGS------------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN 68 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~S------------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe 68 (192)
+.+++|..-|-| |.. -.|.+|-+++-+.+++.+..-+.-|=|=.-.... ...+
T Consensus 100 ~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~--------------~g~d 165 (294)
T TIGR02319 100 EFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARES--------------FGLD 165 (294)
T ss_pred HHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccccc--------------CCHH
Confidence 456788888887 532 1478888888888777666433333222111110 1223
Q ss_pred H----HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccE---EeecCCCCCHHHHHHHHhcCCe
Q 029540 69 Q----AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLL---VLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 69 e----a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPL---VlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
+ ++.|. +.|.|++-| || + .+.+-++++.+.+ +.|+ |+.|+ +.|.-.++++.++|++
T Consensus 166 eaI~Ra~aY~-eAGAD~ifi-----~~------~-~~~~ei~~~~~~~---~~P~~~nv~~~~-~~p~~s~~eL~~lG~~ 228 (294)
T TIGR02319 166 EAIRRSREYV-AAGADCIFL-----EA------M-LDVEEMKRVRDEI---DAPLLANMVEGG-KTPWLTTKELESIGYN 228 (294)
T ss_pred HHHHHHHHHH-HhCCCEEEe-----cC------C-CCHHHHHHHHHhc---CCCeeEEEEecC-CCCCCCHHHHHHcCCc
Confidence 3 44444 589999876 23 1 2456677777766 4676 56553 4555567778888999
Q ss_pred EeecchHHHHHHHHHhc
Q 029540 142 KFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 142 KINi~T~l~~a~~~~~~ 158 (192)
-|-+.+.+..+...+++
T Consensus 229 ~v~~~~~~~~aa~~a~~ 245 (294)
T TIGR02319 229 LAIYPLSGWMAAASVLR 245 (294)
T ss_pred EEEEcHHHHHHHHHHHH
Confidence 99999999988888775
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=83.99 E-value=25 Score=29.67 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=70.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
+.++|-+.|-|=+...+ ...+++++.++++|.-+ | | . -...|+.++.+.+++.-.+|.+
T Consensus 84 ~~~~Gad~itvH~ea~~-----~~~~~~l~~ik~~G~~~----g-v-------a----l~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 84 FAKAGASQFTFHIEATE-----DDPKAVARKIREAGMKV----G-V-------A----IKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred HHHcCCCEEEEeccCCc-----hHHHHHHHHHHHCCCeE----E-E-------E----ECCCCCHHHHHHHHccchhhhH
Confidence 45566555544433321 11345667777766421 1 1 0 1134788889888755567765
Q ss_pred ---EEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 83 ---AVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 83 ---AvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++-.|.. + .... +++++++++... .+.+-.=| |+..+.++.++++|+.-+-+++.+.
T Consensus 143 l~m~v~pG~~-----g--q~~~~~~~~ki~~~~~~~~--~~~I~VdG--GI~~~ti~~~~~aGad~iVvGsaI~ 205 (228)
T PTZ00170 143 LVMTVEPGFG-----G--QSFMHDMMPKVRELRKRYP--HLNIQVDG--GINLETIDIAADAGANVIVAGSSIF 205 (228)
T ss_pred HhhhcccCCC-----C--cEecHHHHHHHHHHHHhcc--cCeEEECC--CCCHHHHHHHHHcCCCEEEEchHHh
Confidence 4433322 1 2222 456666666542 35566667 7889999999999999999998764
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=83.98 E-value=5.7 Score=35.24 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=46.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+.||+| .++ .+..++.+++.+.. .+.+|+- | =-+++-+.+|. +|||
T Consensus 214 eal~~gaDiI~LD--nm~----~e~vk~av~~~~~~~~~v~ieaS----G--------------GI~~~ni~~yA-~tGv 268 (289)
T PRK07896 214 EVLAEGAELVLLD--NFP----VWQTQEAVQRRDARAPTVLLESS----G--------------GLTLDTAAAYA-ETGV 268 (289)
T ss_pred HHHHcCCCEEEeC--CCC----HHHHHHHHHHHhccCCCEEEEEE----C--------------CCCHHHHHHHH-hcCC
Confidence 6899999999999 444 44567777766433 3455543 1 13456777766 7999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.+.++ . .|.+ .|.+||.
T Consensus 269 D~Is~g--a---lt~s-a~~~Dis 286 (289)
T PRK07896 269 DYLAVG--A---LTHS-VPVLDIG 286 (289)
T ss_pred CEEEeC--h---hhcC-CCccccc
Confidence 987654 3 2443 3777775
|
|
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=83.96 E-value=2.7 Score=34.52 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=55.9
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
+-+.|-+.+++-+.. .+ .+..+.++|..+ ..+=.=+|.-. .... .......++.+++++.++
T Consensus 24 ~~~~gv~~~v~~~~~--~~----~~~~~~~la~~~-~~i~~~~G~hP---~~~~----~~~~~~~~~l~~~~~~~~---- 85 (251)
T cd01310 24 AREAGVIKIIVVGTD--LK----SSKRALELAKKY-DNVYAAVGLHP---HDAD----EHVDEDLDLLELLAANPK---- 85 (251)
T ss_pred HHHcCCCEEEEeCCC--HH----HHHHHHHHHHhC-CCeEEEEeeCc---chhh----cCCHHHHHHHHHHhcCCC----
Confidence 345677777766553 23 345566677765 21222122221 1000 000011355666666665
Q ss_pred EEecCcCCCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 83 AVCIGNVHGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
..+||-++=-+....+ ..+-++++.+-+...+.++|+++|.+++ +++.++-+.+.+
T Consensus 86 ~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~-~~~~~~l~~~~~ 143 (251)
T cd01310 86 VVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA-HEDVLEILKEYG 143 (251)
T ss_pred EEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc-hHHHHHHHHhcC
Confidence 4556554422211101 1233445554444444578888886655 566555566665
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=83.95 E-value=13 Score=31.91 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
++.|. +-|.|++-|- | + .+.+-++++.+.+ ++||++.-+.+. -.+++.-++|++-|-++..+
T Consensus 161 ~~aY~-eAGAD~ifi~-----~------~-~~~~~i~~~~~~~---~~Pl~v~~~~~~--~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 161 AKAYA-EAGADMIFIP-----G------L-QSEEEIERIVKAV---DGPLNVNPGPGT--LSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp HHHHH-HTT-SEEEET-----T------S-SSHHHHHHHHHHH---SSEEEEETTSSS--S-HHHHHHTTESEEEETSHH
T ss_pred HHHHH-HcCCCEEEeC-----C------C-CCHHHHHHHHHhc---CCCEEEEcCCCC--CCHHHHHHCCCcEEEEcHHH
Confidence 34444 5899988752 2 1 3455577777777 699888774322 33455566799999999999
Q ss_pred HHHHHHHhc
Q 029540 150 RKAYMDSLS 158 (192)
Q Consensus 150 ~~a~~~~~~ 158 (192)
..+.+.+++
T Consensus 223 ~~aa~~a~~ 231 (238)
T PF13714_consen 223 LRAAMKAMR 231 (238)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877664
|
... |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.92 E-value=2.5 Score=37.34 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCc-EEEEecCcCCCCCCCCCCCCCH
Q 029540 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDID-ALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD-~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
++++.+.|++.+..| |.. ...+.+.++..+ ++.+.. .|.++-| |-.|.+ ..+=.
T Consensus 6 ~k~il~~A~~~~yaV----~Af--------------N~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~~g--~~~~~ 63 (284)
T PRK09195 6 TKQMLNNAQRGGYAV----PAF--------------NIHNLETMQVVVETAAELHSPVIIAGTPG--TFSYAG--TEYLL 63 (284)
T ss_pred HHHHHHHHHHcCceE----EEE--------------EeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhhCC--HHHHH
Confidence 567777777766655 222 123444444443 334432 2333333 334432 11112
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029540 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+.+.. +||.+||--.|.+.|.+++|++.|..-|-++
T Consensus 64 ~~~~~~A~~~---~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D 104 (284)
T PRK09195 64 AIVSAAAKQY---HHPLALHLDHHEKFDDIAQKVRSGVRSVMID 104 (284)
T ss_pred HHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC
Confidence 2344455554 6999999999999999999999999988875
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=83.77 E-value=2.4 Score=36.74 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred HHHHhhhhCCcEEEEecCc-CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC----C-------CCHHHHHHHHh
Q 029540 70 AEEFIDETDIDALAVCIGN-VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS----G-------LSAELIKGCIE 137 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt-~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS----G-------~~~e~~~~~i~ 137 (192)
..+.+.++|||.+-+..|. .++.+.. ...-+++++++|++... +.+|..+.-. | +..++++++++
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~--~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~ 102 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMP--NTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAK 102 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCC--CCceehhcccccccCccCCCcHHHHHHHHHHHH
Confidence 4456888999999888655 3333332 13346999999998764 5788877542 1 25678999999
Q ss_pred cCCeEeecchHH
Q 029540 138 RGVRKFNVNTEV 149 (192)
Q Consensus 138 ~Gi~KINi~T~l 149 (192)
+|+.-|.+...+
T Consensus 103 ~g~~~iri~~~~ 114 (275)
T cd07937 103 NGIDIFRIFDAL 114 (275)
T ss_pred cCCCEEEEeecC
Confidence 999999998654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=83.74 E-value=6.2 Score=35.18 Aligned_cols=119 Identities=17% Similarity=0.259 Sum_probs=68.5
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccC--CccEEee
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKK--GVLLVLH 122 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~--~iPLVlH 122 (192)
..+++||.+.+.++ +.|+|.+.+.=-++ |..++ ...+ ..-+++|-+.++.. ++|.++|
T Consensus 162 ~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~-~~lsp--~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh 238 (345)
T PLN02433 162 MAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWA-GHLSP--VDFEEFSKPYLEKIVDEVKARHPDVPLILY 238 (345)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcc-ccCCH--HHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 46889998887765 36888776652111 12221 1111 11223343333321 4799998
Q ss_pred -cCCCCCHHHHHHHHhcCCeEeecc--hHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 123 -GASGLSAELIKGCIERGVRKFNVN--TEVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 123 -GgSG~~~e~~~~~i~~Gi~KINi~--T~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
+|.+ ..+....++|+.=+|++ +++..+.. .+.+ .+.+|. ++.-..+.+++.+++.|+.++.
T Consensus 239 ~cG~~---~~~~~~~~~~~~~i~~d~~~dl~e~~~-~~g~~~~l~GNi~p~-ll~gt~e~i~~~v~~~i~~~~~ 307 (345)
T PLN02433 239 ANGSG---GLLERLAGTGVDVIGLDWTVDMADARR-RLGSDVAVQGNVDPA-VLFGSKEAIEKEVRDVVKKAGP 307 (345)
T ss_pred eCCCH---HHHHHHHhcCCCEEEcCCCCCHHHHHH-HhCCCeEEEeCCCch-hhCCCHHHHHHHHHHHHHHcCC
Confidence 4443 56888888999888854 45544322 1221 244664 4455668899999999887653
|
|
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=83.61 E-value=21 Score=28.62 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=59.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++++.|.+.|+..++..+-..+.+....+.+.++.. |+.+=.=.+.. +.... . .-..+++..+++++. .+
T Consensus 43 ~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~-~~~~~~~~~~~i~~~-~~ 113 (275)
T cd01292 43 ALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIP----GVPAA---V-DEDAEALLLELLRRG-LE 113 (275)
T ss_pred HHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCC----CCccc---c-chhHHHHHHHHHHHH-Hh
Confidence 578889998887666655444444555666777765 43332111111 10000 0 012234445555443 11
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS 128 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~ 128 (192)
..+++++ .|+.+.. ..++.+.++++-+..++.++|+.+|-+.+..
T Consensus 114 ~~~~gi~-~~~~~~~--~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 114 LGAVGLK-LAGPYTA--TGLSDESLRRVLEEARKLGLPVVIHAGELPD 158 (275)
T ss_pred cCCeeEe-eCCCCCC--CCCCcHHHHHHHHHHHHcCCeEEEeeCCccc
Confidence 2333442 4444332 1245666776666665568999999877764
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=15 Score=32.55 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=36.2
Q ss_pred CHHHHHHHHhhhccCCccE--EeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029540 101 KLDLLKDLHALSSKKGVLL--VLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 101 d~~~L~~I~~~~~~~~iPL--VlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+.+-++++.+.+ ++|| .+--+...|.-.++++-++|++-|-+++.+..+...+++
T Consensus 190 ~~~~i~~~~~~~---~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~a~~ 246 (292)
T PRK11320 190 ELEMYRRFADAV---KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAE 246 (292)
T ss_pred CHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHH
Confidence 455566666655 6888 344222233334666667799999999999888877764
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=83.14 E-value=14 Score=32.52 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=53.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
+++..|+|+|+ |....+.+ ...+.+...|+.+-.-.+.++..... .+.....++++.+++++ .|
T Consensus 109 ~~l~~GvTtv~-d~~~~~~~-------~~~~~~~~~g~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 175 (411)
T cd01298 109 EMIRSGTTTFA-DMYFFYPD-------AVAEAAEELGIRAVLGRGIMDLGTED-----VEETEEALAEAERLIREWHGAA 175 (411)
T ss_pred HHHhcCccEEE-CccccchH-------HHHHHHHHhCCeEEEEcceecCCCcc-----cccHHHHHHHHHHHHHHhcCCC
Confidence 35688999987 54433321 23333444455443332333211100 01123445677777754 34
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
+|.+-+.++ .|+. ...+.+.|+++-+...+.+.|+.+|-
T Consensus 176 ~~~~k~~~~-~~~~-----~~~~~~~l~~~~~~A~~~g~~v~~H~ 214 (411)
T cd01298 176 DGRIRVALA-PHAP-----YTCSDELLREVAELAREYGVPLHIHL 214 (411)
T ss_pred CCceEEEEe-CCCC-----ccCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 777666654 3432 23456767777666555578888883
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.13 E-value=16 Score=33.85 Aligned_cols=123 Identities=21% Similarity=0.284 Sum_probs=82.6
Q ss_pred hhhcCCCEe--EeeCCCC--------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029540 3 AIVLGFDSL--MVDGSHL--------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSV--M~D~S~l--------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++|-..| -+.+|.+ +.+|++...+++++||+.+|+.+.. ..|| ..-|+|+.+.+
T Consensus 85 ~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~------~~Ed--------~~rt~~~~l~~ 150 (409)
T COG0119 85 LLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF------SAED--------ATRTDPEFLAE 150 (409)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE------Eeec--------cccCCHHHHHH
Confidence 556666553 3444533 5799999999999999999966664 1222 13588888777
Q ss_pred Hhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 73 FIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 73 Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
-++. -|++.+-+ +-.=|.- .|.-=.++++.+.+.++. .+||-+|+ -.|+--..--.|+..|+..|..
T Consensus 151 ~~~~~~~~ga~~i~l--~DTvG~~---~P~~~~~~i~~l~~~v~~-~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~ 222 (409)
T COG0119 151 VVKAAIEAGADRINL--PDTVGVA---TPNEVADIIEALKANVPN-KVILSVHCHNDLGMAVANSLAAVEAGADQVEG 222 (409)
T ss_pred HHHHHHHcCCcEEEE--CCCcCcc---CHHHHHHHHHHHHHhCCC-CCeEEEEecCCcchHHHHHHHHHHcCCcEEEE
Confidence 6654 35665544 4443432 365567888888887731 27777766 5677777788889999988864
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=83.10 E-value=15 Score=32.69 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCC--CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNL--KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l--d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
-|++++|++. .+.|+|.|-+- |.-=|.-.+ ..+ -+.++.++.+.+ ++|++.=||-+.+. ++..+..+|..
T Consensus 143 v~s~~~A~~a-~~~G~D~iv~q-G~eAGGH~g--~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg~-~iaaal~lGA~ 214 (330)
T PF03060_consen 143 VTSVREARKA-AKAGADAIVAQ-GPEAGGHRG--FEVGSTFSLLPQVRDAV---DIPVIAAGGIADGR-GIAAALALGAD 214 (330)
T ss_dssp ESSHHHHHHH-HHTT-SEEEEE--TTSSEE-----SSG-HHHHHHHHHHH----SS-EEEESS--SHH-HHHHHHHCT-S
T ss_pred cCCHHHHHHh-hhcCCCEEEEe-ccccCCCCC--ccccceeeHHHHHhhhc---CCcEEEecCcCCHH-HHHHHHHcCCC
Confidence 5889999985 57799998865 554343322 233 378888898888 69999999887654 49999999999
Q ss_pred EeecchHH
Q 029540 142 KFNVNTEV 149 (192)
Q Consensus 142 KINi~T~l 149 (192)
=|-++|-+
T Consensus 215 gV~~GTrF 222 (330)
T PF03060_consen 215 GVQMGTRF 222 (330)
T ss_dssp EEEESHHH
T ss_pred EeecCCeE
Confidence 99999988
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=83.04 E-value=22 Score=31.74 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=50.0
Q ss_pred CCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-C
Q 029540 65 TDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-V 140 (192)
Q Consensus 65 T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i 140 (192)
-++++|.+|+++ .+++++==. -+.-|++-+++|++.+ ++|+.+ |-|=....+++++++.| +
T Consensus 197 ~~~~~A~~~~~~l~~~~i~~iEeP-----------~~~~d~~~~~~l~~~~---~ipia~-~E~~~~~~~~~~~i~~~~~ 261 (355)
T cd03321 197 LTVPEAIERGQALDQEGLTWIEEP-----------TLQHDYEGHARIASAL---RTPVQM-GENWLGPEEMFKALSAGAC 261 (355)
T ss_pred cCHHHHHHHHHHHHcCCCCEEECC-----------CCCcCHHHHHHHHHhc---CCCEEE-cCCCcCHHHHHHHHHhCCC
Confidence 368899999765 466655411 2445889999999988 699998 44556778899998876 6
Q ss_pred eEeecchHH
Q 029540 141 RKFNVNTEV 149 (192)
Q Consensus 141 ~KINi~T~l 149 (192)
.-+|+.-..
T Consensus 262 d~i~~~~~~ 270 (355)
T cd03321 262 DLVMPDLMK 270 (355)
T ss_pred CeEecCHhh
Confidence 666765444
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.03 E-value=9.8 Score=34.37 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHhhhhCCcEEEEecCcCCCCCC----------------------------------CCCCCCCHHHHHHHHhhhcc
Q 029540 69 QAEEFIDETDIDALAVCIGNVHGKYP----------------------------------SSGPNLKLDLLKDLHALSSK 114 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~HG~y~----------------------------------~~~p~ld~~~L~~I~~~~~~ 114 (192)
+..+-+++.|+++|.+.+.+.+-.+. .-.|.+.++.|++|++.+
T Consensus 135 ~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-- 212 (344)
T cd02922 135 ELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-- 212 (344)
T ss_pred HHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc--
Confidence 34444567899999999988743220 001447889999999887
Q ss_pred CCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029540 115 KGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 115 ~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
++|+++-|- + ..++.+++.+.|+.=|-+.
T Consensus 213 -~~PvivKgv-~-~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 213 -KLPIVLKGV-Q-TVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred -CCcEEEEcC-C-CHHHHHHHHHcCCCEEEEE
Confidence 699999976 3 5788999999999877764
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=83.00 E-value=5.6 Score=32.55 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=48.5
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~ 150 (192)
.++|++-+--.+-. .+.+..+.+++++|+++. . .+|+++=| |+..+.+.++++.| ..=|.++|.+.
T Consensus 119 ~~aD~il~dt~~~~-~~Gg~g~~~~~~~l~~~~--~---~~PvilaG--GI~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 119 GEVDAILLDSKSGG-GGGGTGKTFDWSLLRGLA--S---RKPVILAG--GLTPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred ccCCEEEEcCCCCC-CCCCCcceEChHHhhccc--c---CCCEEEEC--CCChHHHHHHHHhcCCCEEEcCCccc
Confidence 56777755432221 111113678999999886 3 59999999 78999999999999 88999998875
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=83.00 E-value=7.6 Score=32.70 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCC--CC-C---------------------------------CCCCCCCHHHHH
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHG--KY-P---------------------------------SSGPNLKLDLLK 106 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG--~y-~---------------------------------~~~p~ld~~~L~ 106 (192)
.+++|+..++..++-|-+.+.+|+=--+| .+ . +....+|+++++
T Consensus 105 ~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~ 184 (229)
T PF00977_consen 105 ALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLK 184 (229)
T ss_dssp HHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHH
T ss_pred HhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHH
Confidence 45677777777776666666666655555 01 0 001236899999
Q ss_pred HHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 107 DLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 107 ~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
++++.+ ++|+..=||-+..+ +++++.+.|+.=+=++|.|
T Consensus 185 ~l~~~~---~~~viasGGv~~~~-Dl~~l~~~G~~gvivg~al 223 (229)
T PF00977_consen 185 QLAEAV---NIPVIASGGVRSLE-DLRELKKAGIDGVIVGSAL 223 (229)
T ss_dssp HHHHHH---SSEEEEESS--SHH-HHHHHHHTTECEEEESHHH
T ss_pred HHHHHc---CCCEEEecCCCCHH-HHHHHHHCCCcEEEEehHh
Confidence 999888 69999999877654 5888889999888888877
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=15 Score=32.21 Aligned_cols=103 Identities=19% Similarity=0.359 Sum_probs=70.7
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
+++|||.-.|+-+-..+... ++.+++. +..||.|. .+.+|+++.+ +.|+|.+-.
T Consensus 160 ~d~ilikdnHi~~~g~v~~a---v~~~r~~~~~~~I~VEv-------------------~tleea~eA~-~~gaD~I~L- 215 (277)
T PRK05742 160 YDAFLIKENHIAACGGIAQA---VAAAHRIAPGKPVEVEV-------------------ESLDELRQAL-AAGADIVML- 215 (277)
T ss_pred cccEEecHHHHHHhCCHHHH---HHHHHHhCCCCeEEEEe-------------------CCHHHHHHHH-HcCCCEEEE-
Confidence 68999988887766555333 3344433 34455552 2357887766 668999843
Q ss_pred cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 86 IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
+ ++.++.++++.+..+ ..+|++-=| |+..+.+....+.|+.=|=+++..
T Consensus 216 -D-----------~~~~e~l~~~v~~~~-~~i~leAsG--GIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 216 -D-----------ELSLDDMREAVRLTA-GRAKLEASG--GINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred -C-----------CCCHHHHHHHHHHhC-CCCcEEEEC--CCCHHHHHHHHHcCCCEEEEChhh
Confidence 2 234566777766552 258999999 889999999999999988877644
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=82.90 E-value=24 Score=30.15 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=64.8
Q ss_pred hhcCCCEe-EeeCCCCCHHHH-HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 4 IVLGFDSL-MVDGSHLPFKDN-ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 4 i~~GFtSV-M~D~S~l~~eeN-i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+.|++.+ ++++..-|..++ +...+++.+..+..|+.+-.-+ .+.++|.+ +.+++.|+|.
T Consensus 75 ~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~-----------------g~~~~e~l-~~Lk~aG~~~ 136 (296)
T TIGR00433 75 KAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATL-----------------GLLDPEQA-KRLKDAGLDY 136 (296)
T ss_pred HHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecC-----------------CCCCHHHH-HHHHHcCCCE
Confidence 45799886 446555454444 7777888888888777653211 12345554 5577899999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHH-HHHHHhhhccCCccEEeecCC--CCCHHHHHHHH----hcCCe
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDL-LKDLHALSSKKGVLLVLHGAS--GLSAELIKGCI----ERGVR 141 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~-L~~I~~~~~~~~iPLVlHGgS--G~~~e~~~~~i----~~Gi~ 141 (192)
+.+++=+.--.|+.-.+.-+++. ++.|+.. .+.++++..|.=- |-+.+++.+.+ +.|+.
T Consensus 137 v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l-~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~ 202 (296)
T TIGR00433 137 YNHNLDTSQEFYSNIISTHTYDDRVDTLENA-KKAGLKVCSGGIFGLGETVEDRIGLALALANLPPE 202 (296)
T ss_pred EEEcccCCHHHHhhccCCCCHHHHHHHHHHH-HHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 98876522122321112234433 3333332 2236887655333 34445555543 45654
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.86 E-value=8.6 Score=36.36 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=76.2
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+|.+.|.+.+= || +|..-+|++ +.++.++..|..+++-+++.+.... .-..| .+.|++ +.+.|+|
T Consensus 113 ~a~~~Gidi~Rifd--~lnd~~n~~---~ai~~ak~~G~~~~~~i~yt~sp~~------t~~y~--~~~a~~-l~~~Gad 178 (468)
T PRK12581 113 LSAQNGIDVFRIFD--ALNDPRNIQ---QALRAVKKTGKEAQLCIAYTTSPVH------TLNYY--LSLVKE-LVEMGAD 178 (468)
T ss_pred HHHHCCCCEEEEcc--cCCCHHHHH---HHHHHHHHcCCEEEEEEEEEeCCcC------cHHHH--HHHHHH-HHHcCCC
Confidence 46677776653 44 455555554 5567889999988866665532110 00011 123444 4467999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
.|.++ -.=|.. .|.-=.++++.|++.. ++|+-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 179 ~I~Ik--DtaG~l---~P~~v~~Lv~alk~~~---~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ 237 (468)
T PRK12581 179 SICIK--DMAGIL---TPKAAKELVSGIKAMT---NLPLIVHTHATSGISQMTYLAAVEAGADRIDT 237 (468)
T ss_pred EEEEC--CCCCCc---CHHHHHHHHHHHHhcc---CCeEEEEeCCCCccHHHHHHHHHHcCCCEEEe
Confidence 87764 333333 2544566777787654 57777665 6788999999999999987744
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.2 Score=37.68 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCH
Q 029540 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
.++++.+.|++.+..|=| . ...+.|.++.-+ ++.+...+ +.+...|-.|.+ ..+=.
T Consensus 5 ~~~~~l~~A~~~~yaV~A----f--------------N~~n~e~~~avi~AAee~~sPvI-iq~~~~~~~~~g--~~~~~ 63 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPA----F--------------NIHNLETLQVVVETAAELRSPVI-LAGTPGTFSYAG--TDYIV 63 (284)
T ss_pred cHHHHHHHHHHcCceEEE----E--------------EeCCHHHHHHHHHHHHHhCCCEE-EEcCccHHhhCC--HHHHH
Confidence 357788888877665422 1 123444444443 44555332 234444434543 11112
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029540 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+.+.. +||.+||--.|-+.|.+++|++.|..-|-|+
T Consensus 64 ~~~~~~a~~~---~VPValHLDH~~~~e~i~~ai~~GftSVMiD 104 (284)
T PRK12737 64 AIAEVAARKY---NIPLALHLDHHEDLDDIKKKVRAGIRSVMID 104 (284)
T ss_pred HHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCeEEec
Confidence 2234444444 6999999999999999999999999988885
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.61 E-value=6.6 Score=31.46 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=52.7
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
..+++|+|+.+-.-++.+|.+.+|. +.+.--.+=.++.+.++++=. -+|+ |+=|| =+|++++++.-++|+.
T Consensus 47 g~~~tp~e~v~aA~~~dv~vIgvSs------l~g~h~~l~~~lve~lre~G~-~~i~-v~~GG-vip~~d~~~l~~~G~~ 117 (143)
T COG2185 47 GLFQTPEEAVRAAVEEDVDVIGVSS------LDGGHLTLVPGLVEALREAGV-EDIL-VVVGG-VIPPGDYQELKEMGVD 117 (143)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEEEe------ccchHHHHHHHHHHHHHHhCC-cceE-EeecC-ccCchhHHHHHHhCcc
Confidence 3689999999988899999999995 222111122233344444311 1455 34344 6888889999999987
Q ss_pred Ee-ecchHHHHHH
Q 029540 142 KF-NVNTEVRKAY 153 (192)
Q Consensus 142 KI-Ni~T~l~~a~ 153 (192)
.| +-+|.+..+.
T Consensus 118 ~if~pgt~~~~~~ 130 (143)
T COG2185 118 RIFGPGTPIEEAL 130 (143)
T ss_pred eeeCCCCCHHHHH
Confidence 65 5566665444
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=82.60 E-value=3.5 Score=36.26 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=39.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+.||+| .++.++ .++.+++.+. -++.||+- || -+|+.+.+|. +|||
T Consensus 203 ea~~~GaDiI~lD--n~~~e~----l~~~v~~l~~~~~~~~leas----GG--------------I~~~ni~~ya-~~Gv 257 (277)
T TIGR01334 203 TVLQASPDILQLD--KFTPQQ----LHHLHERLKFFDHIPTLAAA----GG--------------INPENIADYI-EAGI 257 (277)
T ss_pred HHHHcCcCEEEEC--CCCHHH----HHHHHHHHhccCCCEEEEEE----CC--------------CCHHHHHHHH-hcCC
Confidence 6899999999999 466554 4455555542 34555543 11 3567777765 8999
Q ss_pred cEEEEe
Q 029540 80 DALAVC 85 (192)
Q Consensus 80 D~LAva 85 (192)
|.+.++
T Consensus 258 D~is~g 263 (277)
T TIGR01334 258 DLFITS 263 (277)
T ss_pred CEEEeC
Confidence 988543
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.51 E-value=14 Score=32.04 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=76.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|-++|+.-|-|=++.-+=.=-....+++++.|...+|+.--= =+...||.+|.+.+-+-||.=+
T Consensus 82 ~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrA----------------FD~~~d~~~ale~li~~Gv~RI 145 (241)
T COG3142 82 ARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRA----------------FDECPDPLEALEQLIELGVERI 145 (241)
T ss_pred HHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehh----------------hhhcCCHHHHHHHHHHCCCcEE
Confidence 344555555555554443333444555555555444332111 0245789999999999998765
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH-HhcCCeEeecchHH
Q 029540 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC-IERGVRKFNVNTEV 149 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~-i~~Gi~KINi~T~l 149 (192)
=- ||.-. .+-..+++|+++-+..+ =-+.+=.|+|+..+.++.. ...|+.-++...-.
T Consensus 146 LT-----sGg~~--sa~eg~~~l~~li~~a~---gri~Im~GaGV~~~N~~~l~~~tg~~e~H~s~~~ 203 (241)
T COG3142 146 LT-----SGGKA--SALEGLDLLKRLIEQAK---GRIIIMAGAGVRAENIAELVLLTGVTEVHGSAGV 203 (241)
T ss_pred ec-----CCCcC--chhhhHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHhcCchhhhhcccc
Confidence 42 44433 26677888888776663 3455667789999999998 78888888765544
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=3.1 Score=38.22 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
|.++++-|+.|++.+ +.|+|++|- ++.++.+++++.|+.=|-+
T Consensus 230 ~~ltW~di~~lr~~~---~~pvivKgV--~s~~dA~~a~~~Gvd~I~V 272 (381)
T PRK11197 230 PSISWKDLEWIRDFW---DGPMVIKGI--LDPEDARDAVRFGADGIVV 272 (381)
T ss_pred CCCCHHHHHHHHHhC---CCCEEEEec--CCHHHHHHHHhCCCCEEEE
Confidence 778999999999988 699999998 8999999999999998855
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=82.18 E-value=33 Score=30.69 Aligned_cols=113 Identities=8% Similarity=-0.000 Sum_probs=66.4
Q ss_pred hhhhcCCCEeEeeCCCC-CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVLGFDSLMVDGSHL-PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l-~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++.||+.+-+-...- .+++-++..+.+-+.+-. ++.+=.. . ...| ++++|.+|+++ .
T Consensus 153 ~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~-~~~l~vD---------a------n~~~-~~~~A~~~~~~l~~~ 215 (368)
T cd03329 153 ECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGP-DMRLMHD---------G------AHWY-SRADALRLGRALEEL 215 (368)
T ss_pred HHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCC-CCeEEEE---------C------CCCc-CHHHHHHHHHHhhhc
Confidence 45678999887753321 145555555555443321 2222111 0 0124 58999999755 3
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcC-CeEeecc
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~G-i~KINi~ 146 (192)
++.++= .+ -|.-|++-+.+|++.+ ++|+.+ |-|-.. .++++++++.| +.-||+.
T Consensus 216 ~l~~iE----------eP-~~~~d~~~~~~l~~~~---~ipIa~-~E~~~~~~~~~~~~i~~~a~d~v~~d 271 (368)
T cd03329 216 GFFWYE----------DP-LREASISSYRWLAEKL---DIPILG-TEHSRGALESRADWVLAGATDFLRAD 271 (368)
T ss_pred CCCeEe----------CC-CCchhHHHHHHHHhcC---CCCEEc-cCcccCcHHHHHHHHHhCCCCEEecC
Confidence 444332 11 2334778888898887 699764 667666 88999999888 4455554
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.10 E-value=5.8 Score=35.12 Aligned_cols=71 Identities=28% Similarity=0.388 Sum_probs=46.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+|+++|.+.||+|= ++.| .+++.+++.+.. .+-+|+- |. -+++-+.+|. +||||
T Consensus 203 eAl~agaDiImLDN--m~~e----~~~~av~~l~~~~~~~lEaS-Gg-----------------It~~ni~~yA-~tGVD 257 (280)
T COG0157 203 EALEAGADIIMLDN--MSPE----ELKEAVKLLGLAGRALLEAS-GG-----------------ITLENIREYA-ETGVD 257 (280)
T ss_pred HHHHcCCCEEEecC--CCHH----HHHHHHHHhccCCceEEEEe-CC-----------------CCHHHHHHHh-hcCCC
Confidence 79999999999994 4444 467777774333 3666664 21 2345666655 89999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
.+.++- . |.+ .|.||+.
T Consensus 258 ~IS~ga--l---ths-~~~lDis 274 (280)
T COG0157 258 VISVGA--L---THS-APALDIS 274 (280)
T ss_pred EEEeCc--c---ccC-CcccceE
Confidence 887653 2 333 4777775
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=82.02 E-value=3.1 Score=36.70 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=30.0
Q ss_pred CccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029540 116 GVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 116 ~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
+||.+||--.|-+.|.+++|++.|.+-|-++.
T Consensus 72 ~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 103 (282)
T TIGR01858 72 NMPLALHLDHHESLDDIRQKVHAGVRSAMIDG 103 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEeecC
Confidence 69999999999999999999999999998864
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=81.94 E-value=23 Score=30.82 Aligned_cols=101 Identities=24% Similarity=0.365 Sum_probs=67.6
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029540 8 FDSLMVDGSHLPFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
++++|+---|+.+--++.. .++.+++ . +..++.|. .+.+|+++.. +.|+|.+.+
T Consensus 148 ~d~ilikdnHi~~~G~~~~---av~~~r~~~~~~~~Igvev-------------------~t~eea~~A~-~~gaDyI~l 204 (265)
T TIGR00078 148 SDAVMIKDNHIAAAGSIEK---AVKRARAAAPFALKIEVEV-------------------ESLEEAEEAA-EAGADIIML 204 (265)
T ss_pred ccceeeeccHHHHhCCHHH---HHHHHHHhCCCCCeEEEEe-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 5688888888776554333 2333333 2 34454442 2457888864 789998775
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029540 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
|| +.++.++++.+..+. .+|++-=| |+..++++...+.|+.=|=++.
T Consensus 205 --d~-----------~~~e~lk~~v~~~~~-~ipi~AsG--GI~~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 205 --DN-----------MKPEEIKEAVQLLKG-RVLLEASG--GITLDNLEEYAETGVDVISSGA 251 (265)
T ss_pred --CC-----------CCHHHHHHHHHHhcC-CCcEEEEC--CCCHHHHHHHHHcCCCEEEeCH
Confidence 33 233667777665522 38999988 7889999999999999888843
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=22 Score=30.81 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=72.1
Q ss_pred hhhh-cCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHH---HH
Q 029540 2 EAIV-LGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQA---EE 72 (192)
Q Consensus 2 ~ai~-~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea---~~ 72 (192)
..++ .|.++|++=|| .|+.+|=.+..+.+++.+.. .+.|=+=+|. ++.+++ .+
T Consensus 32 ~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-~~~viagvg~-----------------~~t~~ai~~a~ 93 (293)
T PRK04147 32 FNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-KVKLIAQVGS-----------------VNTAEAQELAK 93 (293)
T ss_pred HHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-CCCEEecCCC-----------------CCHHHHHHHHH
Confidence 3577 89999999886 46789999999988888753 2444332111 222333 34
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029540 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
++++.|+|++.+.--- |-...++==++-+++|.+.+ ++|+++. .|..++.|.+.+..+.
T Consensus 94 ~a~~~Gad~v~v~~P~----y~~~~~~~l~~~f~~va~a~---~lPv~iYn~P~~tg~~l~~~~l~~L~~~ 157 (293)
T PRK04147 94 YATELGYDAISAVTPF----YYPFSFEEICDYYREIIDSA---DNPMIVYNIPALTGVNLSLDQFNELFTL 157 (293)
T ss_pred HHHHcCCCEEEEeCCc----CCCCCHHHHHHHHHHHHHhC---CCCEEEEeCchhhccCCCHHHHHHHhcC
Confidence 5678999999987422 32111111133345555555 6999998 6788999999988753
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=81.83 E-value=3.1 Score=32.63 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=23.2
Q ss_pred HHHHhhhcc--CCccEE--eecCCCCCHHHHHHHHh
Q 029540 106 KDLHALSSK--KGVLLV--LHGASGLSAELIKGCIE 137 (192)
Q Consensus 106 ~~I~~~~~~--~~iPLV--lHGgSG~~~e~~~~~i~ 137 (192)
+.|+..... ..-||| +||.||+....+.+.|.
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA 74 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIA 74 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHH
Confidence 445544322 357888 89999999999888864
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=81.68 E-value=35 Score=29.76 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEE------eecC--CCCCHHHHHHHHhc
Q 029540 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV------LHGA--SGLSAELIKGCIER 138 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLV------lHGg--SG~~~e~~~~~i~~ 138 (192)
+.+...-+++.|++. -.||.|-.. +.+.++.+++. +++++ ++-+ +|....-+++..+.
T Consensus 198 ~~~~~~~~~~~g~~r------i~Hg~~l~~----~~~~i~~l~~~----gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~ 263 (324)
T TIGR01430 198 PESVREALDDLGATR------IGHGVRALE----DPELLKRLAQE----NITLEVCPTSNVALGVVKSLAEHPLRRFLEA 263 (324)
T ss_pred hHHHHHHHHHcCchh------cchhhhhcc----CHHHHHHHHHc----CceEEECCcccccccccCCcccChHHHHHHC
Confidence 334444444556542 268777531 23455666543 45553 2222 34334458888999
Q ss_pred CCeEeecchH
Q 029540 139 GVRKFNVNTE 148 (192)
Q Consensus 139 Gi~KINi~T~ 148 (192)
|| +|=++||
T Consensus 264 Gv-~v~igTD 272 (324)
T TIGR01430 264 GV-KVTLNSD 272 (324)
T ss_pred CC-EEEECCC
Confidence 97 5667776
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=5 Score=35.49 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=45.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+-||+| .++. ...++++++.+. -.+.+|+= || -+++.+.+|. +|||
T Consensus 211 eA~~~GaD~I~LD--n~~~----e~l~~av~~~~~~~~~i~leAs----GG--------------It~~ni~~ya-~tGv 265 (288)
T PRK07428 211 EALEYGADIIMLD--NMPV----DLMQQAVQLIRQQNPRVKIEAS----GN--------------ITLETIRAVA-ETGV 265 (288)
T ss_pred HHHHcCCCEEEEC--CCCH----HHHHHHHHHHHhcCCCeEEEEE----CC--------------CCHHHHHHHH-HcCC
Confidence 6899999999999 4444 345566666553 34555553 22 2356777765 9999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.++++- .|.. .|.+||.
T Consensus 266 D~Isvgs-----l~~s-a~~~Dis 283 (288)
T PRK07428 266 DYISSSA-----PITR-SPWLDLS 283 (288)
T ss_pred CEEEEch-----hhhC-CCccceE
Confidence 9998874 2333 3556654
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.60 E-value=20 Score=32.05 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=56.6
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh--hCCc
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE--TDID 80 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~--TgvD 80 (192)
++..|||+|.-=++.. ..|++.-.+.+..+.+.|+..=--.+..+....+... .......+++++++++++ .+++
T Consensus 80 ~l~~G~Ttv~d~g~~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T PRK12394 80 MPPNGVTTVVDAGSAG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQE-NYDPDNIDENKIHALFRQYRNVLQ 156 (379)
T ss_pred HHhCCccEEEECCCCC--cccHHHHHHHHhhhhcceeeeEEeeecccccccCccc-ccChhHCCHHHHHHHHHHCcCcEE
Confidence 5788999986433322 2445444443333343333222222233221111000 001122457899999876 4566
Q ss_pred EEEEec-CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029540 81 ALAVCI-GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 81 ~LAvai-Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
.+-+.+ .+.|+.|. .+.|++..+..++.++|+.+|-+.
T Consensus 157 g~ki~~~~~~~~~~~-------~~~l~~~~~~A~~~g~~v~iH~~e 195 (379)
T PRK12394 157 GLKLRVQTEDIAEYG-------LKPLTETLRIANDLRCPVAVHSTH 195 (379)
T ss_pred EEEEEEecccccccc-------hHHHHHHHHHHHHcCCCEEEEeCC
Confidence 554443 34565443 334555555544558999999764
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=81.55 E-value=28 Score=30.08 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH-HHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029540 17 HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN-QAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe-ea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
.|++..|...-+++++..+..|+.|- .|-||+ +..+...++|.|++-.=-|..=-.|..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~gI~VS--------------------LFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~~~ 161 (234)
T cd00003 102 GLDVAGQAEKLKPIIERLKDAGIRVS--------------------LFIDPDPEQIEAAKEVGADRVELHTGPYANAYDK 161 (234)
T ss_pred cchhhcCHHHHHHHHHHHHHCCCEEE--------------------EEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc
Confidence 35566777777888888887776542 333332 344558899999988765543222221
Q ss_pred CCCCC--CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHH
Q 029540 96 SGPNL--KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEV 149 (192)
Q Consensus 96 ~~p~l--d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l 149 (192)
... -|++|.+-.+... ...|..|-|.|+.-+.+....+ -+|.-+||+-.+
T Consensus 162 --~~~~~el~~i~~aa~~a~--~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsi 214 (234)
T cd00003 162 --AEREAELERIAKAAKLAR--ELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAI 214 (234)
T ss_pred --hhHHHHHHHHHHHHHHHH--HcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHH
Confidence 222 2333433333332 5789999999999999988754 469999999776
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.49 E-value=3.4 Score=36.52 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHH
Q 029540 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+|++.+.|++.|..| |.+ ...+.|.++-- .++.+...+ +.+...|-.|.+ ...=..
T Consensus 6 ~k~iL~~A~~~~yAV----~Af--------------N~~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~--~~~~~~ 64 (286)
T PRK12738 6 TKYLLQDAQANGYAV----PAF--------------NIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIA--LEEIYA 64 (286)
T ss_pred HHHHHHHHHHCCceE----EEE--------------EeCCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhCC--HHHHHH
Confidence 577888888877665 222 12333444433 344554332 233333323322 111122
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029540 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
.++.+.+.. +||.+||=-.|-+.|.+++|++.|..-|-++-
T Consensus 65 ~~~~~a~~~---~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 105 (286)
T PRK12738 65 LCSAYSTTY---NMPLALHLDHHESLDDIRRKVHAGVRSAMIDG 105 (286)
T ss_pred HHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCeEeecC
Confidence 334444444 69999999999999999999999999998864
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=81.41 E-value=29 Score=30.38 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHH---HHHHHHHHHHHHHh--CCCeEEEe--cc--ccccCCCCCccccccccCCCHHH-HH
Q 029540 2 EAIVLGFDSLMVDGSHLPFKD---NISHTKYISFLAHS--KGMLVEAE--LG--RLSGTEDGLTVEDYEAKLTDVNQ-AE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~ee---Ni~~Tk~vv~~Ah~--~gv~VEaE--lG--~i~g~e~~~~~~~~~~~~T~pee-a~ 71 (192)
+.+++|.+-|.+= +..+++ |-...+++++.--+ .=+++-+- -| .|.- .. +. +..-.+|.+ +.
T Consensus 99 ~~l~~Ga~rViig--T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~-~G----W~-~~t~~~~~e~~~ 170 (262)
T PLN02446 99 SYLDAGASHVIVT--SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVT-DR----WQ-KFSDLAVDEETL 170 (262)
T ss_pred HHHHcCCCEEEEc--hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEE-CC----Cc-ccCCCCHHHHHH
Confidence 5788999999993 333332 35555555544311 11333433 23 3311 00 11 112357777 46
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC--CeEeecchHH
Q 029540 72 EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG--VRKFNVNTEV 149 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G--i~KINi~T~l 149 (192)
+|. +.|++-+=+.==..-|+. ..+|+++++++.+.+ ++|++-=||-+.. +++++..+.| +.-+=++..|
T Consensus 171 ~~~-~~g~~eii~TdI~rDGtl----~G~d~el~~~l~~~~---~ipVIASGGv~sl-eDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 171 EFL-AAYCDEFLVHGVDVEGKR----LGIDEELVALLGEHS---PIPVTYAGGVRSL-DDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHH-HhCCCEEEEEEEcCCCcc----cCCCHHHHHHHHhhC---CCCEEEECCCCCH-HHHHHHHHcCCCCEEEEEEeeH
Confidence 665 445766655432334443 335899999999988 6999999999955 4588888874 5556677766
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=81.40 E-value=2.5 Score=38.30 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029540 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
|.+.|+.|+.|++.. ++|+++-|- ++.++.+++++.|+.=|.|+
T Consensus 210 ~~~~w~~i~~~~~~~---~~pvivKgv--~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQW---KLPVIVKGV--LSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp TT-SHHHHHHHHHHC---SSEEEEEEE---SHHHHHHHHHTT-SEEEEE
T ss_pred CCCCHHHHHHHhccc---CCceEEEec--ccHHHHHHHHhcCCCEEEec
Confidence 679999999999988 699999998 99999999999999999997
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=81.27 E-value=14 Score=31.40 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeecCC----CCCH----------
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHGAS----GLSA---------- 129 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHGgS----G~~~---------- 129 (192)
-+.+++.+++++.|.|.+-+.++..|+... +.++-+.++++++..++. ++++.+|+.. ..|+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~ 86 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS---RPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIER 86 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC---CCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHH
Confidence 567889999999999999999988875432 334567778888877665 6788889753 2232
Q ss_pred --HHHHHHHhcCCeEeecc
Q 029540 130 --ELIKGCIERGVRKFNVN 146 (192)
Q Consensus 130 --e~~~~~i~~Gi~KINi~ 146 (192)
..++.|-++|+..+++.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 87 LKDEIERCEELGIRLLVFH 105 (279)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 12333557888887773
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=81.27 E-value=31 Score=28.82 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=94.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCcccc---------c
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~---------~ 60 (192)
++++.|-+.|=+=--.++.++-.+..+++.++|+.+|+.+=- ++| |+|. +|...... .
T Consensus 27 ~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~adGVHlg~-~d~~~~~~r~~~~~~~~i 105 (211)
T PRK03512 27 RLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAYGVHLGQ-EDLETADLNAIRAAGLRL 105 (211)
T ss_pred HHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCCEEEcCh-HhCCHHHHHHhcCCCCEE
Confidence 578899999999988899999999999999999988765432 222 2332 22100000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
...--+.+|+.+ ..+.|+|.+.++ .+.--- ++ ..+.+-++.|+++.+... ++|++-=| |+..+++.++.+.
T Consensus 106 G~S~H~~~e~~~-A~~~gaDYi~lg--pvf~T~tK~~~~~~~G~~~l~~~~~~~~--~~PV~AiG--GI~~~ni~~l~~~ 178 (211)
T PRK03512 106 GVSTHDDMEIDV-ALAARPSYIALG--HVFPTQTKQMPSAPQGLAQLARHVERLA--DYPTVAIG--GISLERAPAVLAT 178 (211)
T ss_pred EEeCCCHHHHHH-HhhcCCCEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEEC--CCCHHHHHHHHHc
Confidence 111236667655 346799998754 432111 11 124578888888876532 59999999 7889999999999
Q ss_pred CCeEeecchHHH
Q 029540 139 GVRKFNVNTEVR 150 (192)
Q Consensus 139 Gi~KINi~T~l~ 150 (192)
|+.=|=+-+.+.
T Consensus 179 Ga~GiAvisai~ 190 (211)
T PRK03512 179 GVGSIAVVSAIT 190 (211)
T ss_pred CCCEEEEhhHhh
Confidence 999888777664
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=3.8 Score=36.19 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=46.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|- ++. +..++.|++.+.. +.+|+- | --+++-+.+|. +||||.
T Consensus 208 ea~~~gaDiImLDn--~s~----e~l~~av~~~~~~-~~leaS----G--------------gI~~~ni~~yA-~tGVD~ 261 (281)
T PRK06543 208 PVLAAGVDTIMLDN--FSL----DDLREGVELVDGR-AIVEAS----G--------------NVNLNTVGAIA-STGVDV 261 (281)
T ss_pred HHHhcCCCEEEECC--CCH----HHHHHHHHHhCCC-eEEEEE----C--------------CCCHHHHHHHH-hcCCCE
Confidence 68899999999995 333 3456667766542 344443 1 13456777875 799998
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+.++- .|.+ .|.+||.
T Consensus 262 Is~ga-----lths-~~~~D~s 277 (281)
T PRK06543 262 ISVGA-----LTHS-VRALDLG 277 (281)
T ss_pred EEeCc-----cccC-Cccccee
Confidence 87653 3554 4778875
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.73 E-value=18 Score=32.78 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHH
Q 029540 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLK 106 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~ 106 (192)
-++.+++||++|+-+..=+-.+.- ++ .+-..++..+++.+.|+|++.++ |+-++.
T Consensus 51 l~e~i~~ah~~gkk~~V~~N~~~~-~~---------~~~~~~~~l~~l~e~GvDaviv~---------------Dpg~i~ 105 (347)
T COG0826 51 LAEAVELAHSAGKKVYVAVNTLLH-ND---------ELETLERYLDRLVELGVDAVIVA---------------DPGLIM 105 (347)
T ss_pred HHHHHHHHHHcCCeEEEEeccccc-cc---------hhhHHHHHHHHHHHcCCCEEEEc---------------CHHHHH
Confidence 789999999999988776655531 11 12235678888899999999987 455666
Q ss_pred HHHhhhccCCccEEe-ecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHH
Q 029540 107 DLHALSSKKGVLLVL-HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 107 ~I~~~~~~~~iPLVl-HGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
-+++... ++|+.+ +=.+-...+.++-.-+.|...+=..-++...-+.
T Consensus 106 l~~e~~p--~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~ 153 (347)
T COG0826 106 LARERGP--DLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIK 153 (347)
T ss_pred HHHHhCC--CCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHH
Confidence 6666542 345432 2223444555666666666555555555444433
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.51 E-value=3.9 Score=36.09 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 106 KDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 106 ~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
+...+.. +||.+||--.|.+.|.+++|++.|.+-|-|+..
T Consensus 67 ~~~A~~~---~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS 106 (284)
T PRK12857 67 RTAAEKA---SVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGS 106 (284)
T ss_pred HHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCC
Confidence 4444444 699999999999999999999999999988643
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=80.50 E-value=13 Score=33.11 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhCCcEEEEecCcC-CCCC
Q 029540 19 PFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNV-HGKY 93 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~-HG~y 93 (192)
.+-.|-..+.++++-.++ .+++|-.=+- + |.++. .+.+++.+| ++..|+|+|.|.-+|. -..|
T Consensus 103 ~Ll~~p~~~~~iv~av~~~~~~PVsvKiR-~-g~~~~----------~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~ 170 (318)
T TIGR00742 103 CLMGNADLVADCVKAMQEAVNIPVTVKHR-I-GIDPL----------DSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGL 170 (318)
T ss_pred HhhcCHHHHHHHHHHHHHHhCCCeEEEEe-c-CCCCc----------chHHHHHHHHHHHHHcCCCEEEEeCCchhhcCC
Confidence 345666777777777765 3555444332 1 11110 122444444 5679999999988885 3346
Q ss_pred CCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 94 PSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 94 ~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+. .+..|++.+.++++.+. +||++.=|+--.++ ++.++.. |+.=|-|++.+.
T Consensus 171 sg~~~~~~~~~~~~~i~~vk~~~~--~ipVi~NGdI~s~~-da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 171 SPKENREIPPLRYERVYQLKKDFP--HLTIEINGGIKNSE-QIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred CccccccCCchhHHHHHHHHHhCC--CCcEEEECCcCCHH-HHHHHHh-CCCEEEECHHHH
Confidence 531 13468988888887662 59999999886655 5666765 888888887763
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.28 E-value=31 Score=31.54 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=79.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|+++..-+ .||+|.+-++ -||.+--++..--++.|.+|++.+.. .+|+.+=||--.+-| +-||+.+|-.=+
T Consensus 226 V~~~~D~~~a~-~tg~~~I~vs---nhggrqlD~g~st~~~L~ei~~av~~-~~~vi~dGGiR~G~D-v~KAlALGA~~v 299 (360)
T COG1304 226 ILAPEDAAGAG-GTGADGIEVS---NHGGRQLDWGISTADSLPEIVEAVGD-RIEVIADGGIRSGLD-VAKALALGADAV 299 (360)
T ss_pred CCCHHHHHhhc-cCCceEEEEE---cCCCccccCCCChHHHHHHHHHHhCC-CeEEEecCCCCCHHH-HHHHHHhCCchh
Confidence 45778888755 7888888776 36554222333357889999999841 288888888665554 899999999988
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
=++-++.++....= ..=.....+.+++.++..|.+.|+..
T Consensus 300 ~igrp~L~~l~~~g-------~~GV~~~le~~~~El~~~M~L~G~~~ 339 (360)
T COG1304 300 GIGRPFLYGLAAGG-------EAGVERVLEIIRKELKIAMALTGAKN 339 (360)
T ss_pred hhhHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 87777766654421 11234556778888888888888753
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=23 Score=30.72 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCC
Q 029540 65 TDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGV 140 (192)
Q Consensus 65 T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi 140 (192)
-+||++.+.+++ .|+.-+.+. .+-.+ |. +.+++.+.++-+.+++....+.+|...|. +.|++++..+.|+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv-~sg~~-~~----~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGl 113 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLV-TSGRG-LD----DKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGI 113 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE-eccCC-CC----cccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCC
Confidence 599999988765 688776652 11111 22 23677776665555421123567766665 6788899999999
Q ss_pred eEeecchHHHHHHH
Q 029540 141 RKFNVNTEVRKAYM 154 (192)
Q Consensus 141 ~KINi~T~l~~a~~ 154 (192)
..+|++=+....+.
T Consensus 114 d~~~~~lEt~~~~~ 127 (279)
T PRK08508 114 FSYNHNLETSKEFF 127 (279)
T ss_pred CEEcccccchHHHh
Confidence 99998755554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 192 | ||||
| 1gvf_A | 286 | Structure Of Tagatose-1,6-Bisphosphate Aldolase Len | 8e-24 | ||
| 3pm6_A | 306 | Crystal Structure Of A Putative Fructose-1,6-Biphos | 4e-21 | ||
| 3c4u_A | 307 | Structure Of Class Ii Fructose-Biphosphate Aldolase | 8e-20 | ||
| 1rv8_A | 305 | Class Ii Fructose-1,6-Bisphosphate Aldolase From Th | 4e-19 | ||
| 3q94_A | 288 | The Crystal Structure Of Fructose 1,6-Bisphosphate | 5e-19 | ||
| 3gb6_A | 323 | Structure Of Giardia Fructose-1,6-Biphosphate Aldol | 1e-18 | ||
| 3gak_A | 323 | Structure Of Giardia Fructose-1,6-Biphosphate Aldol | 1e-18 | ||
| 2fjk_A | 305 | Crystal Structure Of Fructose-1,6-Bisphosphate Aldo | 4e-18 | ||
| 2isv_A | 323 | Structure Of Giardia Fructose-1,6-biphosphate Aldol | 6e-18 | ||
| 1dos_A | 358 | Structure Of Fructose-Bisphosphate Aldolase Length | 3e-05 | ||
| 1b57_A | 358 | Class Ii Fructose-1,6-Bisphosphate Aldolase In Comp | 3e-05 | ||
| 3ekl_A | 349 | Structural Characterization Of Tetrameric Mycobacte | 5e-05 | ||
| 4a21_A | 344 | Structure Of Mycobacterium Tuberculosis Fructose 1, | 5e-05 | ||
| 3qm3_A | 357 | 1.85 Angstrom Resolution Crystal Structure Of Fruct | 9e-05 |
| >pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase Length = 286 | Back alignment and structure |
|
| >pdb|3PM6|A Chain A, Crystal Structure Of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr Length = 306 | Back alignment and structure |
|
| >pdb|3C4U|A Chain A, Structure Of Class Ii Fructose-Biphosphate Aldolase From Helicobacter Pylori Length = 307 | Back alignment and structure |
|
| >pdb|1RV8|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus Aquaticus In Complex With Cobalt Length = 305 | Back alignment and structure |
|
| >pdb|3Q94|A Chain A, The Crystal Structure Of Fructose 1,6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'ames Ancestor' Length = 288 | Back alignment and structure |
|
| >pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase D83a Complex With Fructose-1,6-Bisphosphate Length = 323 | Back alignment and structure |
|
| >pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase Length = 323 | Back alignment and structure |
|
| >pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In Thermus Caldophilus Length = 305 | Back alignment and structure |
|
| >pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In Complex With Phosphoglycolohydroxamate Length = 323 | Back alignment and structure |
|
| >pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase Length = 358 | Back alignment and structure |
|
| >pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex With Phosphoglycolohydroxamate Length = 358 | Back alignment and structure |
|
| >pdb|3EKL|A Chain A, Structural Characterization Of Tetrameric Mycobacterium Tuberculosis Fructose 1,6-Bisphosphate Aldolase - Substrate Binding And Catalysis Mechanism Of A Class Iia Bacterial Aldolase Length = 349 | Back alignment and structure |
|
| >pdb|4A21|A Chain A, Structure Of Mycobacterium Tuberculosis Fructose 1,6- Bisphosphate Aldolase Bound To Sulfate Length = 344 | Back alignment and structure |
|
| >pdb|3QM3|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni Length = 357 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 Length = 286 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 7e-81
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+
Sbjct: 91 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAE 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
A LTD +A+ F++ T +D+LAV IG HG Y + P + L ++ + V LV
Sbjct: 151 SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKT-PKIDFQRLAEIREVV---DVPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHGAS + E ++ IE GV K NV TE++ A+ ++ P+ D + M +A
Sbjct: 207 LHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV K+ + GS+ +
Sbjct: 267 MKEVVRNKINVCGSANRI 284
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} Length = 306 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 7e-80
Identities = 71/189 (37%), Positives = 103/189 (54%), Gaps = 5/189 (2%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-VEDYEAKLT 65
GFDS+MVD SH ++N+ T+ + +++G+ EAE GR+ G EDG+ D E LT
Sbjct: 113 GFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLT 172
Query: 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125
++EEF+ T I+ LA GNVHG Y G L + L+ ++ ++ V LVLHGA
Sbjct: 173 TPEESEEFV-ATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGER-VGLVLHGAD 230
Query: 126 GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR--PKSDLIHLMASAKEAMKAVVAEKM 183
+ E+ + CIERGV K NVN V Y+ + + L AM+A V + M
Sbjct: 231 PFTKEIFEKCIERGVAKVNVNRAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIM 290
Query: 184 RLFGSSGKA 192
+ S+GKA
Sbjct: 291 DMIDSTGKA 299
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} Length = 288 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 9e-79
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
EAI GF S+M+D SH PF++N+ TK + AH++ + VEAELG + G ED + E
Sbjct: 97 KEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG- 155
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
D + + ++ T ID LA +G+VHG Y PNL ++ + + GV LV
Sbjct: 156 -VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE-PNLGFAEMEQVRDFT---GVPLV 210
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHG +G+ I+ I G K NVNTE + + ++ + D + ++A
Sbjct: 211 LHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDA 270
Query: 175 MKAVVAEKMRLFGSSGKA 192
+KA V K+R FGS+GKA
Sbjct: 271 IKATVIGKIREFGSNGKA 288
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* Length = 307 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 3e-74
Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 31/219 (14%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+A+ GF S+M+D SH F++N+ T + +AH+ G+ VEAELGRL G ED ++V++
Sbjct: 91 EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEK 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVLL 119
+A L + +AE+F+ E+ +D LA IG HG + G P L + L+++ L+ + L
Sbjct: 151 DAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT---NIPL 207
Query: 120 VLHGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158
VLHGAS G+ E ++ ++ G+ K N +T++R A++ +
Sbjct: 208 VLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVR 267
Query: 159 R------PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191
+ + DL + A+ A+K VV E+M+L GS+ K
Sbjct: 268 KVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANK 306
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* Length = 305 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 7e-74
Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 31/220 (14%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ A+ GF S+M+D SH F+ N+ T+ + AH+ G+ VEAELGRL+G E+ + V++
Sbjct: 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVLL 119
+A LT+ +A F++ T D LAV IG HG Y G P + L+ + L L
Sbjct: 149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPL 205
Query: 120 VLHGASG---------------------LSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158
VLHGAS + E IK I G+ K N +T++R A+ +
Sbjct: 206 VLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIR 265
Query: 159 R-----PKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
PK D + A+EA+K VV +M LFGS G+A
Sbjct: 266 EALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA 305
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* Length = 323 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 2e-69
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 36/222 (16%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
AI LGF S+M+D SH PF +N+ TK + AH++ + VEAELG L G E+ +
Sbjct: 92 KMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDV---QN 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS---GPNLKLDLLKDLHALSSKKGV 117
+LT+ A++F++ T +DALAV IG HG Y L +D +K + L+ G+
Sbjct: 149 TVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLT---GI 205
Query: 118 LLVLHGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDS 156
LV+HG+S G+ E I I GV K NV+++ R A +
Sbjct: 206 PLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGA 265
Query: 157 L-----SRPKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
+ P+ D + ++A+ ++ K++ FGS+G A
Sbjct: 266 IRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHA 307
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* Length = 349 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 3e-58
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ F S M DGS +P +N++ + + A + +++E E+G + G EDG+ E
Sbjct: 118 SKGGNPLFQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEIN 177
Query: 61 EAKLTDVNQAEEFIDETDIDA-----LAVCIGNVHGKYPSSGPNLKLDLLKD-------- 107
E T E+ I+ LA GNVHG Y L+ D+L
Sbjct: 178 EKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAK 237
Query: 108 LHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYM-----------DS 156
L + K V HG SG I+ + GV K NV+T+ + A+ D
Sbjct: 238 LGLPADAKPFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTDTQYAFTRPIAGHMFTNYDG 297
Query: 157 LSRPKSDLI--------HLMASAKEAMKAVVAEKMRLFGSSGKA 192
+ + ++ + A+ +M V + +GK+
Sbjct: 298 VLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACNDLHCAGKS 341
|
| >3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} Length = 357 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 3e-54
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 37/228 (16%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG--LTVE 58
F S M+D S ++N+S + + G+ +E ELG G EDG T
Sbjct: 129 KTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGI 188
Query: 59 DYEAKLTDVNQAEEFIDE----TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHA---- 110
D T + +D ++A GNVHG Y +L+ ++LK+
Sbjct: 189 DNSKLYTQPEDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKD 248
Query: 111 ---LSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS----LSRPKSD 163
L+S K + V HG SG + IK + GV K N++T+ + A+ D + ++
Sbjct: 249 KFALNSDKPINFVFHGGSGSELKDIKNAVSYGVIKMNIDTDTQWAFWDGVREYELKNRAY 308
Query: 164 LIH--------------------LMASAKEAMKAVVAEKMRLFGSSGK 191
L + S +E+M + K
Sbjct: 309 LQGQIGNPEGDDKPNKKYYDPRVWLRSGEESMIKRLEIAFEDLNCINK 356
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A Length = 358 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 8e-51
Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 36/227 (15%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG--LTVE 58
F S M+D S ++NI GM +E ELG G EDG +
Sbjct: 131 AATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHM 190
Query: 59 DYEAKLTDVNQA----EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK 114
D A T E + +A GNVHG Y + L +L+D SK
Sbjct: 191 DASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSK 250
Query: 115 K------GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI 165
K + V HG SG +A+ IK + GV K N++T+ + A + + +
Sbjct: 251 KHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYL 310
Query: 166 H---------------------LMASAKEAMKAVVAEKMRLFGSSGK 191
+ + + +M A + + + +
Sbjct: 311 QGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDV 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 3e-04
Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 21 KDNISHTKYISFLAHSKGM-LVEAELGRLSGTEDGLTVEDYE---AKLTDVNQAEEFIDE 76
KD +S T + + SK +V+ + E+ L +Y+ + + + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFV------EEVLR-INYKFLMSPIKTEQRQPSMMTR 110
Query: 77 TDIDALAVCIGNVH--GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-----LSA 129
I+ + KY S L L + L L K V ++ G G ++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVAL 168
Query: 130 EL-----IKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHL 167
++ ++ ++ + F +N + + + P++ L L
Sbjct: 169 DVCLSYKVQCKMDFKI--FWLN-------LKNCNSPETVLEML 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 192 | |||
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 100.0 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 100.0 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 100.0 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 100.0 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 100.0 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 100.0 | |
| 3elf_A | 349 | Fructose-bisphosphate aldolase; zinc enzyme, dihyd | 100.0 | |
| 3qm3_A | 357 | Fructose-bisphosphate aldolase; structural genomic | 100.0 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 100.0 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 100.0 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 100.0 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 99.86 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 99.85 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.46 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.7 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 98.61 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 97.83 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.68 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.57 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 97.54 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 97.53 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 97.51 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.28 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 97.23 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.11 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.1 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 97.07 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 96.9 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 96.88 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.86 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 96.86 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 96.85 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 96.79 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 96.78 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 96.76 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 96.71 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.7 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 96.66 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.66 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 96.66 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 96.65 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 96.62 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 96.61 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.61 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 96.58 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.57 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 96.42 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 96.4 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.35 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 96.34 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 96.32 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 96.32 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 96.32 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 96.31 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 96.23 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 96.16 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 96.12 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 96.09 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 96.09 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 96.08 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.08 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.06 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.04 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 96.04 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 95.99 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 95.95 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 95.94 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 95.92 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.9 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 95.9 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 95.78 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 95.76 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 95.74 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 95.71 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.67 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 95.65 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 95.65 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 95.64 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 95.64 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 95.61 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 95.6 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 95.59 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 95.53 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 95.52 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 95.45 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 95.4 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.37 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 95.33 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.32 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 95.24 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 95.24 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 95.2 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 95.2 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 95.09 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 94.94 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 94.87 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 94.84 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 94.83 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 94.81 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 94.77 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 94.75 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 94.69 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 94.67 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 94.65 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 94.6 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 94.58 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 94.52 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 94.45 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 94.43 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 94.39 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 94.13 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 94.12 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 94.11 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 94.09 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 94.08 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 94.03 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 94.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 93.93 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 93.78 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 93.77 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 93.75 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 93.63 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 93.5 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 93.45 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 92.9 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 92.83 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 92.78 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 92.77 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 92.76 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 92.74 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 92.7 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 92.65 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 92.6 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 92.58 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 92.55 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 92.42 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 92.4 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 92.38 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 92.34 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 92.28 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 92.15 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 92.11 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 92.05 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 92.04 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 92.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 91.66 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 91.59 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 91.59 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 91.5 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 91.49 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 91.3 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 91.28 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 91.22 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 91.21 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 91.16 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 91.15 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 91.11 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 91.06 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 91.05 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 91.01 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 91.01 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 90.93 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 90.88 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 90.88 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 90.88 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 90.87 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 90.86 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 90.8 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 90.78 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 90.77 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 90.42 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 90.38 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 90.33 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 90.2 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 90.16 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 90.15 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 90.12 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 89.99 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 89.84 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 89.62 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 89.61 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 89.48 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 89.11 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 89.07 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 88.99 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 88.88 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 88.8 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 88.78 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 88.68 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 88.63 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 88.51 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 88.51 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 88.41 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 88.4 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 88.24 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 88.12 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 88.05 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 88.02 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 87.94 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 87.85 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 87.77 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 87.72 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 87.66 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 87.45 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 87.4 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 87.25 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 87.16 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 87.14 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 86.99 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 86.92 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 86.88 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 86.74 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 86.55 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 86.53 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 86.32 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 86.28 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 86.27 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 86.22 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 86.21 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 86.06 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 85.99 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 85.9 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 85.78 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 85.7 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 85.52 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 85.39 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 85.28 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 85.22 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 85.13 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 85.05 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 85.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 84.73 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 84.6 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 84.6 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 84.59 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 84.11 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 83.82 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 83.77 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 83.77 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 83.75 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 83.67 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 83.67 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 83.59 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 83.52 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 83.5 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 83.37 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 83.13 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 83.09 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 83.01 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 82.94 | |
| 3t6k_A | 136 | Response regulator receiver; flavodoxin-like, stru | 82.9 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 82.87 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 82.75 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 82.75 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 82.73 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 82.66 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 82.59 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 82.53 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 82.52 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 82.52 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 82.47 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 82.44 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 82.3 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 82.27 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 82.22 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 82.18 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 82.08 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 81.59 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 81.53 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 81.52 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 81.18 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 81.01 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 80.93 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 80.91 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 80.51 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 80.37 |
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-74 Score=501.23 Aligned_cols=186 Identities=38% Similarity=0.616 Sum_probs=176.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++||+||+|||+|||.||+... .+..|||||||++|+++||||
T Consensus 97 ~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~--~~~~yT~Peea~~Fv~~TgvD 174 (288)
T 3q94_A 97 KEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIA--EGVIYADPAECKHLVEATGID 174 (288)
T ss_dssp HHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGG--GGCBCCCHHHHHHHHHHHCCS
T ss_pred HHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCC--ccccCCCHHHHHHHHHHHCCC
Confidence 379999999999999999999999999999999999999999999999999988652 345899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc--
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS-- 158 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~-- 158 (192)
+|||||||+||.|++ +|+|||+||++|++.+ ++|||||||||+|+|+|++||++||+||||+|+++.+|+++++
T Consensus 175 ~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~v---~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~~~r~~ 250 (288)
T 3q94_A 175 CLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREV 250 (288)
T ss_dssp EEEECSSCBSSCCSS-SCCCCHHHHHHHHHHH---CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEcCcccCCcCC-CCccCHHHHHHHHHhc---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChHHHHHHHHHHHHH
Confidence 999999999999987 5999999999999999 6999999999999999999999999999999999999999987
Q ss_pred ---CCC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 159 ---RPK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 159 ---~~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|+ .||++++.+++++|+++++++|++|||.|||
T Consensus 251 ~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~gka 288 (288)
T 3q94_A 251 LNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 288 (288)
T ss_dssp HHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 355 4999999999999999999999999999997
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-74 Score=499.49 Aligned_cols=188 Identities=39% Similarity=0.624 Sum_probs=170.1
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++||+||+|||+|||.||+......+..||||+||++|+++||||
T Consensus 91 ~~ai~~GFtSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD 170 (286)
T 1gvf_A 91 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVD 170 (286)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCS
T ss_pred HHHHHcCCCeEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCC
Confidence 37999999999999999999999999999999999999999999999999887764333345899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ +|+||||||++|++.+ ++|||||||||+|+|+|++||++||+||||+|++++||++++++
T Consensus 171 ~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~~---~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~~~r~~ 246 (286)
T 1gvf_A 171 SLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAW 246 (286)
T ss_dssp EEEECSSCCSSCCSS-CCCCCHHHHHHHHHHC---CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEeecCccccCcCC-CCccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999983
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||++++.+++++|+++++++|++|||.||+
T Consensus 247 ~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~gka 284 (286)
T 1gvf_A 247 FAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284 (286)
T ss_dssp HHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44 5899999999999999999999999999996
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-73 Score=495.44 Aligned_cols=189 Identities=38% Similarity=0.658 Sum_probs=171.0
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++|++||+|||+|||.||+....+.+..||||+||++|+++||||
T Consensus 91 ~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD 170 (307)
T 3n9r_A 91 EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVD 170 (307)
T ss_dssp HHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCS
T ss_pred HHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCC
Confidence 37999999999999999999999999999999999999999999999999998876444456899999999999999999
Q ss_pred EEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCC---------------------CCCHHHHHHHHhc
Q 029540 81 ALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIER 138 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS---------------------G~~~e~~~~~i~~ 138 (192)
+|||||||+||.|+. ++|+|||+||++|++.+ ++|||||||| |+|+|+|++||++
T Consensus 171 ~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~---~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~ 247 (307)
T 3n9r_A 171 YLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT---NIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKG 247 (307)
T ss_dssp EEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH---CSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHT
T ss_pred EEEEecCCcccccCCCCCCccCHHHHHHHHhcC---CCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHHHc
Confidence 999999999999983 36999999999998877 6999999999 9999999999999
Q ss_pred CCeEeecchHHHHHHHHHhc-----CCC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 139 GVRKFNVNTEVRKAYMDSLS-----RPK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 139 Gi~KINi~T~l~~a~~~~~~-----~~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
||+||||+|+++.||+++++ +|+ .||++++.+++++|+++++++|++|||.|||
T Consensus 248 GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~gka 307 (307)
T 3n9r_A 248 GINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI 307 (307)
T ss_dssp TEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred CceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999997 354 5999999999999999999999999999996
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-72 Score=492.53 Aligned_cols=189 Identities=41% Similarity=0.628 Sum_probs=174.0
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++||+||+|||+|||.||+......+..||||+||++|+++||||
T Consensus 89 ~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD 168 (305)
T 1rvg_A 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGAD 168 (305)
T ss_dssp HHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCS
T ss_pred HHHHHcCCCeeeeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCC
Confidence 37999999999999999999999999999999999999999999999999888754333355899999999999999999
Q ss_pred EEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCC---------------------CCCHHHHHHHHhc
Q 029540 81 ALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIER 138 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS---------------------G~~~e~~~~~i~~ 138 (192)
+|||||||+||.|++ ++|+||||||++|++++ ++|||||||| |+|+|+|++||++
T Consensus 169 ~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~---~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~ 245 (305)
T 1rvg_A 169 YLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISL 245 (305)
T ss_dssp EEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC---CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHT
T ss_pred EEEEecCccccccCCCCCCccCHHHHHHHHHhc---CCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHHHHHHC
Confidence 999999999999993 26999999999999998 6999999999 9999999999999
Q ss_pred CCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 139 GVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 139 Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
||+||||+|+++.||++++++ |+ .||++++.+++++|+++++++|++|||.|||
T Consensus 246 GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~gka 305 (305)
T 1rvg_A 246 GIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA 305 (305)
T ss_dssp TEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred CCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999983 54 5899999999999999999999999999996
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-71 Score=486.32 Aligned_cols=186 Identities=39% Similarity=0.651 Sum_probs=165.7
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++||+||+|||+|||.||+. + .+..||||+||++|+++||||
T Consensus 92 ~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v--~-~~~~yTdPeea~~Fv~~TgvD 168 (323)
T 2isw_A 92 KMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDV--Q-NTVQLTEPQDAKKFVELTGVD 168 (323)
T ss_dssp HHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESCC-------------CCCCCHHHHHHHHHHHCCS
T ss_pred HHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCc--c-cccccCCHHHHHHHHHHHCCC
Confidence 3799999999999999999999999999999999999999999999999988875 2 255899999999999999999
Q ss_pred EEEEecCcCCCCCC-CCCCC--CCHHHHHHHHhhhccCCccEEeecCC---------------------CCCHHHHHHHH
Q 029540 81 ALAVCIGNVHGKYP-SSGPN--LKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCI 136 (192)
Q Consensus 81 ~LAvaiGt~HG~y~-~~~p~--ld~~~L~~I~~~~~~~~iPLVlHGgS---------------------G~~~e~~~~~i 136 (192)
+|||||||+||.|+ +++|+ ||||||++|++++ ++|||||||| |+|+|+|++||
T Consensus 169 ~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~---~vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai 245 (323)
T 2isw_A 169 ALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLT---GIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAI 245 (323)
T ss_dssp EEEECSSCCSSSBCCCC----CCCCHHHHHHHHHH---CSCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHH
T ss_pred EEEEecCccccccCCCCCcccccCHHHHHHHHHHh---CCCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHH
Confidence 99999999999999 22699 9999999999999 6999999999 99999999999
Q ss_pred hcCCeEeecchHHHHHHHHHhc-----CCC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 137 ERGVRKFNVNTEVRKAYMDSLS-----RPK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 137 ~~Gi~KINi~T~l~~a~~~~~~-----~~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++||+||||+|+++.||+++++ +|+ .||++++.+++++|+++++++|++|||.||+
T Consensus 246 ~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~gka 307 (323)
T 2isw_A 246 GEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHA 307 (323)
T ss_dssp HTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCTTCT
T ss_pred HCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999987 344 4999999999999999999999999999986
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=480.66 Aligned_cols=190 Identities=38% Similarity=0.583 Sum_probs=176.2
Q ss_pred Chhhhc--------CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc-ccccCCCHHHHH
Q 029540 1 MEAIVL--------GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED-YEAKLTDVNQAE 71 (192)
Q Consensus 1 ~~ai~~--------GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~-~~~~~T~peea~ 71 (192)
++||++ ||||||||||++||||||++||++|++||++|++||+|||+|||.||+..... .+..||||+||+
T Consensus 99 ~~ai~~~~~~~~~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~ 178 (306)
T 3pm6_A 99 KRAADLSRSETHEPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESE 178 (306)
T ss_dssp HHHHHTC------CCCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHH
T ss_pred HHHHHhhhhccCCCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccCCCHHHHH
Confidence 379999 99999999999999999999999999999999999999999999998875322 246899999999
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 72 EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+|+ +||||+|||||||+||.|++++|+|||+||++|++.++ .++|||||||||+|+|+|++||++||+||||+|+++.
T Consensus 179 ~Fv-~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~-~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~Tdl~~ 256 (306)
T 3pm6_A 179 EFV-ATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVG-ERVGLVLHGADPFTKEIFEKCIERGVAKVNVNRAVNN 256 (306)
T ss_dssp HHH-TTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHT-TTSEEEECSCTTCCHHHHHHHHHTTEEEEEESHHHHH
T ss_pred HHH-HcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhC-CCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 999 89999999999999999986569999999999999983 1599999999999999999999999999999999999
Q ss_pred HHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 152 AYMDSLSR--PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 152 a~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|++++++ ...+|++++..++++|++.|+++|++|||.|||
T Consensus 257 a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~gka 299 (306)
T 3pm6_A 257 EYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGKA 299 (306)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 99999985 346899999999999999999999999999986
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=481.13 Aligned_cols=191 Identities=27% Similarity=0.364 Sum_probs=166.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC---
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD--- 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg--- 78 (192)
+||++||||||||||++||||||++||++|++||++|++||+|||+|||.||+......+..|||||||++|+++||
T Consensus 119 ~~i~~GFtSVMiDgS~lp~eENi~~Tk~vv~~ah~~gvsVEaElG~iGG~Edgv~~~~~~~~yT~Peea~~Fv~~tg~~~ 198 (349)
T 3elf_A 119 KGGNPLFQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEINEKLYTSPEDFEKTIEALGAGE 198 (349)
T ss_dssp TTCCCSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCBC-------------CCCHHHHHHHHHHHTTST
T ss_pred HHhhcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccCCcccccccccCCCHHHHHHHHHHhCCCC
Confidence 56788999999999999999999999999999999999999999999999988754333568999999999999999
Q ss_pred --CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhc--------cCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 79 --IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSS--------KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 79 --vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~--------~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
||+|||||||+||.|++++|+|||+||++|++.++ ..++|||||||||+|+|+|++||++||+||||+|+
T Consensus 199 ~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~I~~~v~~~~~~~~~~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~Td 278 (349)
T 3elf_A 199 HGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAKLGLPADAKPFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTD 278 (349)
T ss_dssp TSCEEEEECSSCBSSCCCTTSSCCCTHHHHHHHHHHHHHHTCCTTCCCCCEEECCCTTCCHHHHHHHHHTTEEEEEECHH
T ss_pred CCceEEEEecCCcccCCCCCCCccCHHHHHHHHHHHHhhcCCccccCCCcEEEeCCCCCCHHHHHHHHHcCCEEEEcchH
Confidence 99999999999999985469999999999999873 22699999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-----C-----------C---CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 149 VRKAYMDSLSR-----P-----------K---SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 149 l~~a~~~~~~~-----~-----------~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+++||++++++ | + .|||.++++++++|+++|+++|++|||.|+.
T Consensus 279 l~~A~~~~vr~~~~~~~~~~~~~~g~~~n~~~~Dpr~~l~~~~~a~~~~v~~~~~~~gs~~~~ 341 (349)
T 3elf_A 279 TQYAFTRPIAGHMFTNYDGVLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACNDLHCAGKS 341 (349)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCCCCHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHhCccccccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999872 2 1 3899999999999999999999999999974
|
| >3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-69 Score=477.38 Aligned_cols=190 Identities=25% Similarity=0.313 Sum_probs=167.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCHHHHHHHhhhhC-
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDVNQAEEFIDETD- 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~peea~~Fv~~Tg- 78 (192)
+++++||||||||||++||||||++||++|++||++|++||+|||+|||.||++.... .+..||||+||++|+++||
T Consensus 130 ~~~~~GFtSVMiDgS~lp~eENI~~Tk~vv~~ah~~gvsVEaELG~igG~Edgv~~~~~~~~~~yT~Peea~~Fv~~tg~ 209 (357)
T 3qm3_A 130 THGQALFSSHMLDLSEESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGK 209 (357)
T ss_dssp HHSSCSCSEEECCCTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCC-----CCSSTTCTTTSCCHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccccCCHHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999999999999999999998865322 3568999999999999986
Q ss_pred ---CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-------CCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 79 ---IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK-------KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 79 ---vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-------~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
+|+|||||||+||.|++++|+|||+||++|++.+++ .++|||||||||+|+|+|++||++||+||||+|+
T Consensus 210 ~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~~~~~~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~Td 289 (357)
T 3qm3_A 210 ISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSYGVIKMNIDTD 289 (357)
T ss_dssp TCSCEEEECCSSCCCSSCCSSCCCCCTHHHHHHHHHHHHHTTCSCSCCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHH
T ss_pred CCcccEEEEecCCccCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCcEEEeCCCCCCHHHHHHHHHCCceEEEechH
Confidence 579999999999999754699999999999886532 2699999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-----C----------------C---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 149 VRKAYMDSLSR-----P----------------K---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 149 l~~a~~~~~~~-----~----------------~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
+++||++++++ | + .|||.++.+++++|+++|+++|++|||.||
T Consensus 290 l~~A~~~~vr~~~~~~~~~~~~~~g~p~~~~~~n~~~~Dpr~~l~~~~~a~~~~v~~~~~~~gs~g~ 356 (357)
T 3qm3_A 290 TQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGEESMIKRLEIAFEDLNCINK 356 (357)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSSSEEETTEEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHhCchhhhcccCCccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999872 2 1 389999999999999999999999999997
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-67 Score=469.41 Aligned_cols=188 Identities=27% Similarity=0.340 Sum_probs=170.1
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccc--cccccCCCHHHHHHHhhh-hCCc
Q 029540 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE--DYEAKLTDVNQAEEFIDE-TDID 80 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~--~~~~~~T~peea~~Fv~~-TgvD 80 (192)
+++||||||||+|++||||||++||++|++||++|++||+|||+|||.||++... +.+..||||+||++|+++ ||||
T Consensus 134 ~~~gFtSVMiDgS~~p~eENI~~Tkevv~~ah~~gvsVEaELG~vGG~EDgv~~~~~~~~~~yT~Peea~~fv~~ttgvd 213 (358)
T 1dos_A 134 GKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKIS 213 (358)
T ss_dssp SSCSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTC
T ss_pred ccCCCceEeecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccccCcCCCccccccccccccCCHHHHHHHHHHhcCCC
Confidence 3467999999999999999999999999999999999999999999988876432 124579999999999999 7999
Q ss_pred ---EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 81 ---ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 81 ---~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+|||||||+||.|+++.|+|||+||++|++.+++ .++|||||||||+|+|+|++||++||+||||+|++++
T Consensus 214 ~~d~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~g~~~~~vpLVlHGgSG~~~e~i~~ai~~GV~KiNi~Tdl~~ 293 (358)
T 1dos_A 214 PRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQW 293 (358)
T ss_dssp SCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred hhceEEEecccccCccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEEcHHHHH
Confidence 9999999999999644699999999999996321 3699999999999999999999999999999999999
Q ss_pred HHHHHhcC-----C----------------C---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 152 AYMDSLSR-----P----------------K---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 152 a~~~~~~~-----~----------------~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
||++++++ + + .|||.++.+++++|+++++++|++|||.||
T Consensus 294 A~~~~vr~~~~~~~~~~~~~~g~~~~~~~p~~k~~Dpr~~l~~~~~a~~~~v~~~~~~~gs~gk 357 (358)
T 1dos_A 294 ATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDV 357 (358)
T ss_dssp HHHHHHHHHHHHHGGGSSSSEEETTEEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHhcchhhhhccCCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999872 2 2 389999999999999999999999999997
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=362.92 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=159.2
Q ss_pred hhhhcCCCEeEeeCCC------CCHHHHHHH--HHHHHHHHHhCCCe--EEEeccccccCCC----CCccccccccCCCH
Q 029540 2 EAIVLGFDSLMVDGSH------LPFKDNISH--TKYISFLAHSKGML--VEAELGRLSGTED----GLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~------l~~eeNi~~--Tk~vv~~Ah~~gv~--VEaElG~i~g~e~----~~~~~~~~~~~T~p 67 (192)
+||++||||||||+|+ +||+|||.. |+++|++||++ ++ +|+|||+|+|.|. +......+..||||
T Consensus 112 ~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~~-~~~~~eaElG~vgG~Ev~v~~~~~~~~~~~~~T~P 190 (420)
T 2fiq_A 112 AYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESV-ATDCQREQLSYVIGTEVPVPGGEASAIQSVHITHV 190 (420)
T ss_dssp HHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHH-CCHHHHHHCEEEEECSSCC----------CCCCCH
T ss_pred HHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH-cccCCcccceEEeeeecCCCCCcccccCCCCCCCH
Confidence 6999999999999999 999999977 79999999999 88 9999999999883 32211223359999
Q ss_pred HHHHHHhh-------hhCCcE-------EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc-EEe--ecCCCCCHH
Q 029540 68 NQAEEFID-------ETDIDA-------LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL-LVL--HGASGLSAE 130 (192)
Q Consensus 68 eea~~Fv~-------~TgvD~-------LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP-LVl--HGgSG~~~e 130 (192)
++|++||+ +||||+ |||++||+||.| . .|+|||++|++|++.+ ++| ||| |||||+|++
T Consensus 191 eeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y-~-~~~ld~e~l~~I~~~v---~~P~LVle~HGgSg~~~e 265 (420)
T 2fiq_A 191 EDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHS-N-IIHYQPQEAQALAQWI---ENTRMVYEAHSTDYQTRT 265 (420)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSS-C-EECCCGGGGHHHHHHH---TTSSCEEEESCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCC-C-CCCcCHHHHHHHHHhc---CCCCEEEecCCCCCCCHH
Confidence 99999999 999999 999999999999 4 6999999999999999 589 999 999999999
Q ss_pred HHHHHHhcCCeEeecchHHHHHHHHHhcC---------CCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 131 LIKGCIERGVRKFNVNTEVRKAYMDSLSR---------PKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+|+++|+.||+||||+|+++.+|.++++. +..+++.+.....++|++..+.+++.+++.
T Consensus 266 ~l~~~v~~Gi~kiNV~t~l~~a~~~al~~l~~ie~~l~~~~~~~~l~~~~~~~m~~~~~~w~~~~~g~ 333 (420)
T 2fiq_A 266 AYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTG 333 (420)
T ss_dssp HHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHHHHSCTTTCCCHHHHHHHHHHHSGGGTTTTSCSS
T ss_pred HHHHHHHcCCCEEEECHHHHHHHHHHHHHHHHhhhhhccccchhhhHHHHHHHHHHhHHHHHHHhCCC
Confidence 99999999999999999999999998862 223667788888899999888888888764
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=287.30 Aligned_cols=154 Identities=16% Similarity=0.061 Sum_probs=124.3
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHH--------HHHHHHHHHHhCCCeE-EEeccccccCCCCCc----cccccccCCCH
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNIS--------HTKYISFLAHSKGMLV-EAELGRLSGTEDGLT----VEDYEAKLTDV 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~--------~Tk~vv~~Ah~~gv~V-EaElG~i~g~e~~~~----~~~~~~~~T~p 67 (192)
++||++||||||||+|++||||||+ +|++++++||+.++++ ..|+|.++|.|+++. ....+..||+|
T Consensus 118 ~~aI~AGFtSVMiD~S~~p~eeNi~lt~evva~rtaeL~~~A~~~~~~~g~~e~~yviGtEvpvpGGa~~~~~~~~~T~P 197 (450)
T 3txv_A 118 TAYAKAGFTKLHLDTSMGCAGEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTEVPIPGGALEELDTLEVTAP 197 (450)
T ss_dssp HHHHTTTCCEEEECCCBCCSSSCSBCCHHHHHHHHHHHHHHHHHTC------CCEEEEECC-------------CCCCCH
T ss_pred HHHHHcCCCEEEECCCCCchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeeeecCCCCccccccccCCCCCH
Confidence 3799999999999999999999985 4555559999976555 225666666555321 11223469999
Q ss_pred HHHHHHhhh-------hCCc-------EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc-EEeecCC--CCCHH
Q 029540 68 NQAEEFIDE-------TDID-------ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL-LVLHGAS--GLSAE 130 (192)
Q Consensus 68 eea~~Fv~~-------TgvD-------~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP-LVlHGgS--G~~~e 130 (192)
++|++|++. +|+| +|+|++||.|| ++. .|++||++|++|++.++ ++| |||||+| |+|++
T Consensus 198 eeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~-~~~-v~~y~~e~~~~L~~~v~--~~P~LVlhghStDy~~~e 273 (450)
T 3txv_A 198 EAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFG-NEN-VIAYDRARAEKLSATLG--QLHGMVFEAHSTDYQTPD 273 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEEC-SSC-EECCCTTTTSHHHHGGG--TSTTCEEEESCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccC-CCC-CCCCCHHHHHHHHHHhc--cCCCEEEecCCCCCCCHH
Confidence 999999984 8998 99999999998 554 69999999999999985 699 9999999 99999
Q ss_pred HHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029540 131 LIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+|+++++.||+|+||+|+|..++.+++.
T Consensus 274 ~l~~~V~~GiaklNVgp~Lt~a~reAl~ 301 (450)
T 3txv_A 274 ALRELVADGFAILKVGPGLTFALREALY 301 (450)
T ss_dssp HHHHHHHTTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEChHHHHHHHHHHH
Confidence 9999999999999999999999999874
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=168.55 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=117.0
Q ss_pred hhhhcCCCEeEe-eCCC---------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMV-DGSH---------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~S~---------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|+++||| |+|+ .+++||++.+++++++||++|+.||+||+.+.+.+++ .+|+|+++.
T Consensus 91 ~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~--------~~~~~~~~~ 162 (302)
T 2ftp_A 91 AALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYD--------GDVDPRQVA 162 (302)
T ss_dssp HHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT--------BCCCHHHHH
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC--------CCCCHHHHH
Confidence 689999999997 8775 7999999999999999999999999999999776652 379999999
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|++ ++|+|.|+++ +.||.- .|...++++++|++.+. ++||++|| ++|++..+..+|++.|+++||.
T Consensus 163 ~~~~~~~~~G~d~i~l~--DT~G~~---~P~~~~~lv~~l~~~~~--~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~ 234 (302)
T 2ftp_A 163 WVARELQQMGCYEVSLG--DTIGVG---TAGATRRLIEAVASEVP--RERLAGHFHDTYGQALANIYASLLEGIAVFDS 234 (302)
T ss_dssp HHHHHHHHTTCSEEEEE--ESSSCC---CHHHHHHHHHHHTTTSC--GGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEEe--CCCCCc---CHHHHHHHHHHHHHhCC--CCeEEEEeCCCccHHHHHHHHHHHhCCCEEEe
Confidence 9998 8999998887 999972 49999999999998873 49999999 9999999999999999999975
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=165.38 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=118.1
Q ss_pred hhhhcCCCEeEee--CC--------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVD--GS--------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D--~S--------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|+++|||+ +| ..+++||++.+++++++||++|+.||++|+.+.+.++. ..|+|+++.
T Consensus 87 ~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~--------~~~~~~~~~ 158 (295)
T 1ydn_A 87 AAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYD--------GPVTPQAVA 158 (295)
T ss_dssp HHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTT--------EECCHHHHH
T ss_pred HHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcC--------CCCCHHHHH
Confidence 6899999999999 77 88999999999999999999999999999998776653 469999999
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeecc
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+|++ ++|+|.|+++ +.||.- .|...++++++|++.++ ++||++|| ++|++..+..+|++.|+++||+.
T Consensus 159 ~~~~~~~~~G~d~i~l~--Dt~G~~---~P~~~~~lv~~l~~~~~--~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~s 231 (295)
T 1ydn_A 159 SVTEQLFSLGCHEVSLG--DTIGRG---TPDTVAAMLDAVLAIAP--AHSLAGHYHDTGGRALDNIRVSLEKGLRVFDAS 231 (295)
T ss_dssp HHHHHHHHHTCSEEEEE--ETTSCC---CHHHHHHHHHHHHTTSC--GGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEB
T ss_pred HHHHHHHhcCCCEEEec--CCCCCc---CHHHHHHHHHHHHHhCC--CCeEEEEECCCcchHHHHHHHHHHhCCCEEEec
Confidence 9999 8999998887 899973 49999999999998873 39999999 99999999999999999999873
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-12 Score=107.98 Aligned_cols=127 Identities=21% Similarity=0.213 Sum_probs=101.6
Q ss_pred hhhhcCCCEe---EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029540 2 EAIVLGFDSL---MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSV---M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
+|+++|+++| |++++. +.+++++.++++++.||++|+.|..|++.- |. ... .. ..-++++++.+++.+.|
T Consensus 107 ~a~~~Ga~~v~~~l~~~~~-~~~~~~~~~~~v~~~~~~~g~~viv~~~~~-G~--~l~-~~--~~~~~~~~~a~~a~~~G 179 (273)
T 2qjg_A 107 EAIRMGADAVSIHVNVGSD-EDWEAYRDLGMIAETCEYWGMPLIAMMYPR-GK--HIQ-NE--RDPELVAHAARLGAELG 179 (273)
T ss_dssp HHHHTTCSEEEEEEEETST-THHHHHHHHHHHHHHHHHHTCCEEEEEEEC-ST--TCS-CT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEEEecCCC-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCC-Cc--ccC-CC--CCHhHHHHHHHHHHHcC
Confidence 6899999999 778865 999999999999999999999999987521 21 110 00 00134577778899999
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHH----HHHHHhcCCeEeecchHHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AEL----IKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~----~~~~i~~Gi~KINi~T~l~ 150 (192)
+|++.++ | .++++++++|.+.+ ++|++.|||.+.+ +++ ++++++.|+..|++++.+.
T Consensus 180 ad~i~~~-------~-----~~~~~~l~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~ 241 (273)
T 2qjg_A 180 ADIVKTS-------Y-----TGDIDSFRDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIF 241 (273)
T ss_dssp CSEEEEC-------C-----CSSHHHHHHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHH
T ss_pred CCEEEEC-------C-----CCCHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhh
Confidence 9999986 2 15899999999887 6999999999986 666 7777899999999999885
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.7e-07 Score=76.47 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=102.3
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+-.|.- +.+||++..++++++|+++|..|++.+...-+.++. ..++|+.+.
T Consensus 88 ~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~--------~~~~~~~~~ 159 (298)
T 2cw6_A 88 AAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYE--------GKISPAKVA 159 (298)
T ss_dssp HHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTT--------BSCCHHHHH
T ss_pred HHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC--------CCCCHHHHH
Confidence 68899999998776654 679999999999999999999999998866455542 358898887
Q ss_pred HHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 72 EFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++ .+.|+|.+.++ ...|.- .|.-=.++++.+++.++ ++||-+|+ ..|+.-...-.|++.|+..|+
T Consensus 160 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~~~~lv~~l~~~~~--~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd 230 (298)
T 2cw6_A 160 EVTKKFYSMGCYEISLG--DTIGVG---TPGIMKDMLSAVMQEVP--LAALAVHCHDTYGQALANTLMALQMGVSVVD 230 (298)
T ss_dssp HHHHHHHHTTCSEEEEE--ETTSCC---CHHHHHHHHHHHHHHSC--GGGEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCEEEec--CCCCCc---CHHHHHHHHHHHHHhCC--CCeEEEEECCCCchHHHHHHHHHHhCCCEEE
Confidence 776 46799987665 555643 36666788888888773 48899888 899999999999999999874
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-07 Score=80.10 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=116.2
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+-.|.- +.+||++..++++++|++.|..|++.|...-+.++. ..++|+.+.
T Consensus 89 ~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~--------~~~~~~~~~ 160 (307)
T 1ydo_A 89 NALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYE--------KDVPIEQVI 160 (307)
T ss_dssp HHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT--------BCCCHHHHH
T ss_pred HHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcC--------CCCCHHHHH
Confidence 68899999999776664 479999999999999999999999998887555542 258999988
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe---
Q 029540 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF--- 143 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI--- 143 (192)
++++ +.|+|.+.++ ...|.- .|.-=.++++.+++.+. ++||.+|+ ..|+.-...-.|++.|+..|
T Consensus 161 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~t 233 (307)
T 1ydo_A 161 RLSEALFEFGISELSLG--DTIGAA---NPAQVETVLEALLARFP--ANQIALHFHDTRGTALANMVTALQMGITVFDGS 233 (307)
T ss_dssp HHHHHHHHHTCSCEEEE--CSSCCC---CHHHHHHHHHHHHTTSC--GGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEB
T ss_pred HHHHHHHhcCCCEEEEc--CCCCCc---CHHHHHHHHHHHHHhCC--CCeEEEEECCCCchHHHHHHHHHHhCCCEEEEc
Confidence 8874 6899976655 556643 36666778888887763 48999999 99999999999999999876
Q ss_pred ---------------ecchHHHHHHHHHhc-CCCCChHHHHH
Q 029540 144 ---------------NVNTEVRKAYMDSLS-RPKSDLIHLMA 169 (192)
Q Consensus 144 ---------------Ni~T~l~~a~~~~~~-~~~~~~~~~~~ 169 (192)
|..|+-...+...+. +...|+..+.+
T Consensus 234 v~GlGecp~a~graGN~~~E~lv~~L~~~g~~t~idl~~L~~ 275 (307)
T 1ydo_A 234 AGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLLS 275 (307)
T ss_dssp GGGCCEETTEEEEECBCBHHHHHHHHHHTTCBCCCCHHHHHH
T ss_pred ccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 555665555555442 23345554433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00048 Score=59.91 Aligned_cols=134 Identities=12% Similarity=0.144 Sum_probs=94.1
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~ 60 (192)
+|.++||+-|-+.+.+ -+++...+...++++-.++. ++.|-.-|..-...++
T Consensus 152 ~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~------- 224 (338)
T 1z41_A 152 RAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK------- 224 (338)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT-------
T ss_pred HHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCC-------
Confidence 6789999999998864 14677888888888877753 4444443332110111
Q ss_pred cccCCCHHHHHHH---hhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 61 EAKLTDVNQAEEF---IDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 61 ~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
. .+++++.+| +++.|+|+|-++-|+.+.. ++. .|..+++.+++|++.+ ++|++.=||-- +.++..+++
T Consensus 225 --g-~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~-~~~~~~~~~~~ir~~~---~iPVi~~Ggi~-s~~~a~~~l 296 (338)
T 1z41_A 225 --G-LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINV-FPGYQVSFAEKIREQA---DMATGAVGMIT-DGSMAEEIL 296 (338)
T ss_dssp --S-CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHHHHHHHHHHH---CCEEEECSSCC-SHHHHHHHH
T ss_pred --C-CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCC-CccchHHHHHHHHHHC---CCCEEEECCCC-CHHHHHHHH
Confidence 1 234555555 4568999999999986532 222 3567889999999988 69998877543 568899999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.-|-+++.+.
T Consensus 297 ~~G~aD~V~iGR~~i 311 (338)
T 1z41_A 297 QNGRADLIFIGRELL 311 (338)
T ss_dssp HTTSCSEEEECHHHH
T ss_pred HcCCceEEeecHHHH
Confidence 999 99999999874
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0018 Score=56.52 Aligned_cols=137 Identities=11% Similarity=0.063 Sum_probs=96.1
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~ 60 (192)
+|.++||+-|-+-+++ -++|...+...|+++-.++. +..|-.=|. ..+ ... .
T Consensus 152 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls---~~~-~~~---~ 224 (340)
T 3gr7_A 152 RAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRIS---ASD-YHP---D 224 (340)
T ss_dssp HHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEE---SCC-CST---T
T ss_pred HHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEec---ccc-ccC---C
Confidence 6889999999999885 14777888888888877753 444443332 211 110 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
.....++.+..+-+++.|+|+|-++-|..... ++. .|..+++.+++|++.+ ++|++.=||-. +.++..++++.|
T Consensus 225 g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~-~~~~~~~~~~~ik~~~---~iPVi~~GgI~-s~e~a~~~L~~G 299 (340)
T 3gr7_A 225 GLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNV-YPGYQVPFAELIRREA---DIPTGAVGLIT-SGWQAEEILQNG 299 (340)
T ss_dssp SCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHHHHHHHHHHT---TCCEEEESSCC-CHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCC-CccccHHHHHHHHHHc---CCcEEeeCCCC-CHHHHHHHHHCC
Confidence 11234555656667788999999998875542 111 3667899999999988 69998888543 567799999999
Q ss_pred -CeEeecchHHH
Q 029540 140 -VRKFNVNTEVR 150 (192)
Q Consensus 140 -i~KINi~T~l~ 150 (192)
+.-|-+++.+.
T Consensus 300 ~aD~V~iGR~~l 311 (340)
T 3gr7_A 300 RADLVFLGRELL 311 (340)
T ss_dssp SCSEEEECHHHH
T ss_pred CeeEEEecHHHH
Confidence 89999998874
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0055 Score=52.88 Aligned_cols=147 Identities=13% Similarity=0.154 Sum_probs=100.9
Q ss_pred hhhhcCCCEeEeeCC--CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhhh
Q 029540 2 EAIVLGFDSLMVDGS--HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S--~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~~ 76 (192)
+|+++|.+-|-+..- .-+..+.++..+++++.||++|+.|=.|. ..|.. ..+||+- +.+...+
T Consensus 133 ~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~-~~G~~-----------~~~d~e~i~~aariA~e 200 (295)
T 3glc_A 133 DAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVT-GVGKD-----------MVRDQRYFSLATRIAAE 200 (295)
T ss_dssp HHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEE-CC---------------CCSHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEEC-CCCCc-----------cCCCHHHHHHHHHHHHH
Confidence 689999887765533 56788999999999999999999887775 22211 2366653 5577788
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH----HHHHHHhcCCeEeecchHHHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE----LIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e----~~~~~i~~Gi~KINi~T~l~~a 152 (192)
.|.|++-++ |++ +.++++.+.+ ++|+|+=||.-.+++ .++.+++.|..=+=+++.+.++
T Consensus 201 lGAD~VKt~-------~t~-------e~~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~ 263 (295)
T 3glc_A 201 MGAQIIKTY-------YVE-------KGFERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS 263 (295)
T ss_dssp TTCSEEEEE-------CCT-------TTHHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred hCCCEEEeC-------CCH-------HHHHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC
Confidence 999999887 542 2366777666 699999999887774 4566779999988888776522
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHH--HHHHHHHHh
Q 029540 153 YMDSLSRPKSDLIHLMASAKEAMKA--VVAEKMRLF 186 (192)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~i~~~ 186 (192)
.+|..+.+.....+.+ .+++.++++
T Consensus 264 ---------~dp~~~~~al~~ivh~~~s~~eA~~~~ 290 (295)
T 3glc_A 264 ---------DHPVAMMKAVQAVVHHNETADRAYELY 290 (295)
T ss_dssp ---------SSHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ---------cCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2555555544444433 245555554
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0021 Score=53.22 Aligned_cols=119 Identities=17% Similarity=0.241 Sum_probs=86.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++++|-+-|.+|++...-. ...+++++.+|+.|+.+=++ .++++++++ +.+.|+|.
T Consensus 96 ~~~~aGad~I~l~~~~~~~p---~~l~~~i~~~~~~g~~v~~~-------------------v~t~eea~~-a~~~Gad~ 152 (229)
T 3q58_A 96 ALAQAGADIIAFDASFRSRP---VDIDSLLTRIRLHGLLAMAD-------------------CSTVNEGIS-CHQKGIEF 152 (229)
T ss_dssp HHHHHTCSEEEEECCSSCCS---SCHHHHHHHHHHTTCEEEEE-------------------CSSHHHHHH-HHHTTCSE
T ss_pred HHHHcCCCEEEECccccCCh---HHHHHHHHHHHHCCCEEEEe-------------------cCCHHHHHH-HHhCCCCE
Confidence 47889999999999974111 24567888888887665543 246788877 55789998
Q ss_pred EEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+.+ |.||.... .....++++++++.+. ++|++-=||-. +.++++++.++|..=+=++|.+..
T Consensus 153 Ig~---~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~GGI~-t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 153 IGT---TLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAEGRYN-TPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp EEC---TTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEESSCC-SHHHHHHHHHTTCSEEEECHHHHC
T ss_pred EEe---cCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEECCCC-CHHHHHHHHHcCCCEEEEchHhcC
Confidence 855 45653211 0133489999999865 49999777443 367799999999999999998863
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0024 Score=52.99 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=85.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++++|-+-|.+|++...-. ...+++++.+|+.|+.+=++ .++++++++ +.+.|+|.
T Consensus 96 ~~~~~Gad~V~l~~~~~~~p---~~l~~~i~~~~~~g~~v~~~-------------------v~t~eea~~-a~~~Gad~ 152 (232)
T 3igs_A 96 ALAQAGAAIIAVDGTARQRP---VAVEALLARIHHHHLLTMAD-------------------CSSVDDGLA-CQRLGADI 152 (232)
T ss_dssp HHHHHTCSEEEEECCSSCCS---SCHHHHHHHHHHTTCEEEEE-------------------CCSHHHHHH-HHHTTCSE
T ss_pred HHHHcCCCEEEECccccCCH---HHHHHHHHHHHHCCCEEEEe-------------------CCCHHHHHH-HHhCCCCE
Confidence 57889999999999974211 24567888888887665443 246788877 45789998
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+.+ |.||..... ....++++++++++. ++|++-=| |+ +.++++++.++|..=+-++|.+..
T Consensus 153 Ig~---~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~G--GI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 153 IGT---TMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAEG--RYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp EEC---TTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEES--CCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred EEE---cCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEEC--CCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 865 455532210 134589999999875 49999666 55 467899999999999999998863
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.002 Score=56.27 Aligned_cols=135 Identities=11% Similarity=0.132 Sum_probs=94.0
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVE 58 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~ 58 (192)
+|.++||+-|-+.+++ -++|...+...|+++-.++. +..|-.-|..- + ...
T Consensus 160 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~---~-~~~-- 233 (349)
T 3hgj_A 160 RALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSAT---D-WGE-- 233 (349)
T ss_dssp HHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESC---C-CST--
T ss_pred HHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccc---c-ccC--
Confidence 6889999999999987 15788889999999888763 23333322211 1 100
Q ss_pred cccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029540 59 DYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 59 ~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
.-.+++++.++ +++.|+|+|-++.|....... +..|..+++.+++|++.+ ++|++.=|+-. +.++..+
T Consensus 234 ----~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~-t~e~a~~ 305 (349)
T 3hgj_A 234 ----GGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV---GLRTGAVGLIT-TPEQAET 305 (349)
T ss_dssp ----TSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCC-CHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc---CceEEEECCCC-CHHHHHH
Confidence 01245555555 456799999999886654311 112567889999999988 69998877543 5678999
Q ss_pred HHhcC-CeEeecchHHH
Q 029540 135 CIERG-VRKFNVNTEVR 150 (192)
Q Consensus 135 ~i~~G-i~KINi~T~l~ 150 (192)
+++.| +.-|-+++.+.
T Consensus 306 ~l~~G~aD~V~iGR~~l 322 (349)
T 3hgj_A 306 LLQAGSADLVLLGRVLL 322 (349)
T ss_dssp HHHTTSCSEEEESTHHH
T ss_pred HHHCCCceEEEecHHHH
Confidence 99999 88999998874
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.019 Score=49.45 Aligned_cols=136 Identities=15% Similarity=0.069 Sum_probs=91.8
Q ss_pred hhhhcCCCEeE----eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccC-CCHHHHHHHhhh
Q 029540 2 EAIVLGFDSLM----VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKL-TDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM----~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~-T~peea~~Fv~~ 76 (192)
+|+++|.+-|- ++ |..|-.+.++..+++++.|+++|+.+=.|+.--|.. ..+ +... ..+.++.+-..+
T Consensus 116 ~a~~~GAdaV~vlv~~~-~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~---v~~---~~~~~~~v~~aa~~a~~ 188 (304)
T 1to3_A 116 AVKRDGAKALKLLVLWR-SDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPR---CGD---KFDREQAIIDAAKELGD 188 (304)
T ss_dssp HHHHTTCCEEEEEEEEC-TTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCS---SCS---CCCHHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEEEEcC-CCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCc---ccc---CCChhHHHHHHHHHHHH
Confidence 68899999887 77 777789999999999999999999988886533211 100 0000 123553333446
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCcc-EEeecCCCCCH--HHHHHHHhcCCeEeecchHHHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVL-LVLHGASGLSA--ELIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iP-LVlHGgSG~~~--e~~~~~i~~Gi~KINi~T~l~~a 152 (192)
.|+|+|-+-.+.. | + . +++.++++-+.... .++| +|+=||....+ +.++.+++.|+.=+=++..+..+
T Consensus 189 lGaD~iKv~~~~~-~-~----g--~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 189 SGADLYKVEMPLY-G-K----G--ARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp SSCSEEEECCGGG-G-C----S--CHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred cCCCEEEeCCCcC-C-C----C--CHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 8999998876422 1 1 1 55666665555111 2699 99999883322 56899999999888888777543
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0093 Score=47.48 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=82.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH-HHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV-NQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p-eea~~Fv~~TgvD 80 (192)
+|+++|.+.|.+-.. +.++++ .++++.|+++|+.+-.|+=. .++| +.+++ +.+.|+|
T Consensus 72 ~~~~~Gad~v~v~~~--~~~~~~---~~~~~~~~~~g~~~~v~~~~----------------~~t~~~~~~~-~~~~g~d 129 (211)
T 3f4w_A 72 LLFDAGADYVTVLGV--TDVLTI---QSCIRAAKEAGKQVVVDMIC----------------VDDLPARVRL-LEEAGAD 129 (211)
T ss_dssp HHHHTTCSEEEEETT--SCHHHH---HHHHHHHHHHTCEEEEECTT----------------CSSHHHHHHH-HHHHTCC
T ss_pred HHHhcCCCEEEEeCC--CChhHH---HHHHHHHHHcCCeEEEEecC----------------CCCHHHHHHH-HHHcCCC
Confidence 588999999999655 345544 57788888888877654211 1345 44555 5578999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+.+..|.. |. +. +.-.++.+++|++... ++|++.=||- ..++++++++.|+.-+=++|.+.
T Consensus 130 ~i~v~~g~~-g~-~~--~~~~~~~i~~l~~~~~--~~~i~~~gGI--~~~~~~~~~~~Gad~vvvGsai~ 191 (211)
T 3f4w_A 130 MLAVHTGTD-QQ-AA--GRKPIDDLITMLKVRR--KARIAVAGGI--SSQTVKDYALLGPDVVIVGSAIT 191 (211)
T ss_dssp EEEEECCHH-HH-HT--TCCSHHHHHHHHHHCS--SCEEEEESSC--CTTTHHHHHTTCCSEEEECHHHH
T ss_pred EEEEcCCCc-cc-cc--CCCCHHHHHHHHHHcC--CCcEEEECCC--CHHHHHHHHHcCCCEEEECHHHc
Confidence 987654311 11 11 1126888999988753 5899887754 57899999999999999999875
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0096 Score=52.28 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=93.0
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVE 58 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~ 58 (192)
+|.++||+-|-+.+.+ -++|...+...|+++-.++. +..|-.=|.. . +....
T Consensus 166 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~---~-~~~~~- 240 (363)
T 3l5l_A 166 RARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGV---L-EYDGR- 240 (363)
T ss_dssp HHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEE---E-CSSSC-
T ss_pred HHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecc---h-hcCCC-
Confidence 6889999999999864 14777788999999988864 2223222221 1 11000
Q ss_pred cccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029540 59 DYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 59 ~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
..-+++++.++ +++.|+|+|-++.|+...... ...|..+.+.++.|++.+ ++|++.=|+-. +.++..+
T Consensus 241 ----G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~GgI~-s~e~a~~ 312 (363)
T 3l5l_A 241 ----DEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA---KLPVTSAWGFG-TPQLAEA 312 (363)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCCEEECSSTT-SHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc---CCcEEEeCCCC-CHHHHHH
Confidence 00124554444 556899999999987654321 113567889999999988 69998777532 5788999
Q ss_pred HHhcC-CeEeecchHHH
Q 029540 135 CIERG-VRKFNVNTEVR 150 (192)
Q Consensus 135 ~i~~G-i~KINi~T~l~ 150 (192)
+++.| +.-|-+++.+.
T Consensus 313 ~l~~G~aD~V~iGR~~l 329 (363)
T 3l5l_A 313 ALQANQLDLVSVGRAHL 329 (363)
T ss_dssp HHHTTSCSEEECCHHHH
T ss_pred HHHCCCccEEEecHHHH
Confidence 99999 88999998874
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0091 Score=50.75 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=85.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|.+-|.+=.+.+|.++ .+++++.||.+|+.+=.| -++++|+++- .+.|+|.
T Consensus 130 ~A~~~GAD~VlLi~a~l~~~~----l~~l~~~a~~lGl~~lve-------------------v~t~ee~~~A-~~~Gad~ 185 (272)
T 3qja_A 130 EARAHGADMLLLIVAALEQSV----LVSMLDRTESLGMTALVE-------------------VHTEQEADRA-LKAGAKV 185 (272)
T ss_dssp HHHHTTCSEEEEEGGGSCHHH----HHHHHHHHHHTTCEEEEE-------------------ESSHHHHHHH-HHHTCSE
T ss_pred HHHHcCCCEEEEecccCCHHH----HHHHHHHHHHCCCcEEEE-------------------cCCHHHHHHH-HHCCCCE
Confidence 577899999988555677543 578899999998876222 2567777654 4679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+. + .... ....|++.+++|.+.+.. ++|+|- +||+. .++++++.++|+.=+=|++.+.
T Consensus 186 IGv~--~---r~l~-~~~~dl~~~~~l~~~v~~-~~pvVa--egGI~t~edv~~l~~~GadgvlVGsal~ 246 (272)
T 3qja_A 186 IGVN--A---RDLM-TLDVDRDCFARIAPGLPS-SVIRIA--ESGVRGTADLLAYAGAGADAVLVGEGLV 246 (272)
T ss_dssp EEEE--S---BCTT-TCCBCTTHHHHHGGGSCT-TSEEEE--ESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred EEEC--C---Cccc-ccccCHHHHHHHHHhCcc-cCEEEE--ECCCCCHHHHHHHHHcCCCEEEEcHHHh
Confidence 8876 2 1111 244678888888876631 488887 55776 8899999999999999999884
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0066 Score=52.43 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|+++|++-|-+-+. .| .++++..++.|+.|=. ..+++++|+. +.+.|+|.+
T Consensus 84 a~~~g~d~V~~~~g-~p--------~~~i~~l~~~g~~v~~-------------------~v~~~~~a~~-~~~~GaD~i 134 (332)
T 2z6i_A 84 VIEEGVKVVTTGAG-NP--------SKYMERFHEAGIIVIP-------------------VVPSVALAKR-MEKIGADAV 134 (332)
T ss_dssp HHHTTCSEEEECSS-CG--------GGTHHHHHHTTCEEEE-------------------EESSHHHHHH-HHHTTCSCE
T ss_pred HHHCCCCEEEECCC-Ch--------HHHHHHHHHcCCeEEE-------------------EeCCHHHHHH-HHHcCCCEE
Confidence 55667776666554 23 2344555555544321 1367788876 457899999
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
-+. |...|.+.+ ...+++++++|++.+ ++|++.=||-.. .+++.+++..|..=|-++|.+..
T Consensus 135 ~v~-g~~~GG~~g--~~~~~~ll~~i~~~~---~iPViaaGGI~~-~~~~~~al~~GAdgV~vGs~~l~ 196 (332)
T 2z6i_A 135 IAE-GMEAGGHIG--KLTTMTLVRQVATAI---SIPVIAAGGIAD-GEGAAAGFMLGAEAVQVGTRFVV 196 (332)
T ss_dssp EEE-CTTSSEECC--SSCHHHHHHHHHHHC---SSCEEEESSCCS-HHHHHHHHHTTCSEEEECHHHHT
T ss_pred EEE-CCCCCCCCC--CccHHHHHHHHHHhc---CCCEEEECCCCC-HHHHHHHHHcCCCEEEecHHHhc
Confidence 984 433454432 345789999999887 699999886554 57799999999999999998843
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.01 Score=52.49 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=87.6
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|+++||+-|-+.+++ -+++...+...||++-.++. |- .|-.-|..-...+ +. .
T Consensus 174 ~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~-~~---~ 249 (377)
T 2r14_A 174 RAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF-GL---T 249 (377)
T ss_dssp HHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT-TC---C
T ss_pred HHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC-CC---C
Confidence 6789999999998765 14788888999998888752 21 2322222110000 00 0
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.-.+++++.+| +++.|+|+|.++-|+.++.++. . +++.+++|++.+ ++|++.=|+- ..++..+++
T Consensus 250 ---~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~--~--~~~~~~~ik~~~---~iPvi~~Ggi--~~~~a~~~l 317 (377)
T 2r14_A 250 ---DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT--Y--PEGFREQMRQRF---KGGLIYCGNY--DAGRAQARL 317 (377)
T ss_dssp ---CSCHHHHHHHHHHHHHHTTCSEEEEECCC------C--C--CTTHHHHHHHHC---CSEEEEESSC--CHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc--c--hHHHHHHHHHHC---CCCEEEECCC--CHHHHHHHH
Confidence 01234555555 4568999999999886654432 2 566788999888 6999988865 589999999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.=|=++..+.
T Consensus 318 ~~g~aD~V~igR~~l 332 (377)
T 2r14_A 318 DDNTADAVAFGRPFI 332 (377)
T ss_dssp HTTSCSEEEESHHHH
T ss_pred HCCCceEEeecHHHH
Confidence 998 88888888764
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.017 Score=50.78 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=89.3
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|.++||+-|=+.+.+ -+++...+...++++-.++. |- .|-.= |...+. ...
T Consensus 169 ~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vr---is~~~~-~~~-- 242 (365)
T 2gou_A 169 NAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVR---LAPLTT-LNG-- 242 (365)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEE---ECSSCC-TTS--
T ss_pred HHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEE---Eccccc-cCC--
Confidence 5789999999998865 14777888888888877752 21 12111 111110 000
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.. .-.+++++.+| +++.|+|+|.++-|+..+ .|...++.+++|++.+ ++|++.=|+- +.++..+++
T Consensus 243 ~~-~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-----~~~~~~~~~~~i~~~~---~iPvi~~Ggi--~~~~a~~~l 311 (365)
T 2gou_A 243 TV-DADPILTYTAAAALLNKHRIVYLHIAEVDWDD-----APDTPVSFKRALREAY---QGVLIYAGRY--NAEKAEQAI 311 (365)
T ss_dssp CC-CSSHHHHHHHHHHHHHHTTCSEEEEECCBTTB-----CCCCCHHHHHHHHHHC---CSEEEEESSC--CHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCC-----CCCccHHHHHHHHHHC---CCcEEEeCCC--CHHHHHHHH
Confidence 00 01234565555 456899999999887543 2334578889999988 6999988875 788999999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.=|=+++.+.
T Consensus 312 ~~g~aD~V~igR~~i 326 (365)
T 2gou_A 312 NDGLADMIGFGRPFI 326 (365)
T ss_dssp HTTSCSEEECCHHHH
T ss_pred HCCCcceehhcHHHH
Confidence 998 88888888774
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.01 Score=47.65 Aligned_cols=119 Identities=14% Similarity=0.227 Sum_probs=77.8
Q ss_pred hhhhcCCCEeEeeCCCCCHH-HHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFK-DNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~e-eNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
.++++|.+.|.++...++-. +. ..++++.+++. |..+=. ...+|+++++ +.+.|
T Consensus 83 ~~~~~Gad~v~l~~~~~~~p~~~---~~~~i~~~~~~~~~~~v~~-------------------~~~t~~e~~~-~~~~G 139 (223)
T 1y0e_A 83 ELIESQCEVIALDATLQQRPKET---LDELVSYIRTHAPNVEIMA-------------------DIATVEEAKN-AARLG 139 (223)
T ss_dssp HHHHHTCSEEEEECSCSCCSSSC---HHHHHHHHHHHCTTSEEEE-------------------ECSSHHHHHH-HHHTT
T ss_pred HHHhCCCCEEEEeeecccCcccC---HHHHHHHHHHhCCCceEEe-------------------cCCCHHHHHH-HHHcC
Confidence 35677888888877664211 11 23566666654 555411 1246888877 66889
Q ss_pred CcEEEEecCcCCCCCCCC--C--CCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHH
Q 029540 79 IDALAVCIGNVHGKYPSS--G--PNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~--~--p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+|++-++. ||..... . ...+++.++++++.+ ++|++-=| |+ +.+++.++.+.|..=+=++|.+..
T Consensus 140 ~d~i~~~~---~g~t~~~~~~~~~~~~~~~~~~~~~~~---~ipvia~G--GI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 140 FDYIGTTL---HGYTSYTQGQLLYQNDFQFLKDVLQSV---DAKVIAEG--NVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp CSEEECTT---TTSSTTSTTCCTTHHHHHHHHHHHHHC---CSEEEEES--SCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCEEEeCC---CcCcCCCCCCCCCcccHHHHHHHHhhC---CCCEEEec--CCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 99875422 2221110 0 234677888888776 69999877 55 678899999999999999998753
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.014 Score=53.40 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=85.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|+++|.+.|-+=.|.-++ +|+ ++.+++|++.|..|++-+....+ ..++|+.+.++++ +.|
T Consensus 108 ~a~~~Gvd~i~if~~~sd~-~ni---~~~i~~ak~~G~~v~~~i~~~~~------------~~~~~e~~~~~a~~l~~~G 171 (464)
T 2nx9_A 108 RAVKNGMDVFRVFDAMNDV-RNM---QQALQAVKKMGAHAQGTLCYTTS------------PVHNLQTWVDVAQQLAELG 171 (464)
T ss_dssp HHHHTTCCEEEECCTTCCT-HHH---HHHHHHHHHTTCEEEEEEECCCC------------TTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCcCEEEEEEecCHH-HHH---HHHHHHHHHCCCEEEEEEEeeeC------------CCCCHHHHHHHHHHHHHCC
Confidence 4678888876644444444 455 57899999999999988744322 2357887777754 579
Q ss_pred CcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 79 IDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 79 vD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+|.|.++ +|.. .|.-=.++++.+++.+ ++||-+|+ .+|+.-...-.|++.|+.-|.
T Consensus 172 ad~I~l~DT~G~~-------~P~~v~~lv~~l~~~~---~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD 231 (464)
T 2nx9_A 172 VDSIALKDMAGIL-------TPYAAEELVSTLKKQV---DVELHLHCHSTAGLADMTLLKAIEAGVDRVD 231 (464)
T ss_dssp CSEEEEEETTSCC-------CHHHHHHHHHHHHHHC---CSCEEEEECCTTSCHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEcCCCCCc-------CHHHHHHHHHHHHHhc---CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 9988775 4433 2544466778888776 58888776 889999999999999999874
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.063 Score=47.43 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=81.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|++-|-++.++-.- +.+.++++.+++. ++.|=. + ..+++++|+... +.|+
T Consensus 160 ~~~~~G~d~i~i~~~~g~~----~~~~e~i~~ir~~~~~~pviv-----~-------------~v~~~~~a~~a~-~~Ga 216 (404)
T 1eep_A 160 ELVKAHVDILVIDSAHGHS----TRIIELIKKIKTKYPNLDLIA-----G-------------NIVTKEAALDLI-SVGA 216 (404)
T ss_dssp HHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHCTTCEEEE-----E-------------EECSHHHHHHHH-TTTC
T ss_pred HHHHCCCCEEEEeCCCCCh----HHHHHHHHHHHHHCCCCeEEE-----c-------------CCCcHHHHHHHH-hcCC
Confidence 4678899999888766422 3444555555543 665532 1 124578888755 7899
Q ss_pred cEEEEecCcC-CCC-----CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNV-HGK-----YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~-HG~-----y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|.+-|+.|.- |+. +.+ .| +++.|.++.+..+..++|++.=||-.. .+++.+++.+|..=|.++|.+.
T Consensus 217 d~I~vg~~~G~~~~~~~~~~~g-~p--~~~~l~~v~~~~~~~~ipVia~GGI~~-~~d~~~ala~GAd~V~iG~~~l 289 (404)
T 1eep_A 217 DCLKVGIGPGSICTTRIVAGVG-VP--QITAICDVYEACNNTNICIIADGGIRF-SGDVVKAIAAGADSVMIGNLFA 289 (404)
T ss_dssp SEEEECSSCSTTSHHHHHHCCC-CC--HHHHHHHHHHHHTTSSCEEEEESCCCS-HHHHHHHHHHTCSEEEECHHHH
T ss_pred CEEEECCCCCcCcCccccCCCC-cc--hHHHHHHHHHHHhhcCceEEEECCCCC-HHHHHHHHHcCCCHHhhCHHHh
Confidence 9999854221 110 111 24 467788888765444799998886554 4669999999999999999984
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.007 Score=52.76 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=100.3
Q ss_pred hhhhcCCCEeEeeC--C--------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDG--S--------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~--S--------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|-+=. | ..+.+||++..++++++|+++|..|+.-+-... ....++|+...
T Consensus 104 ~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~-----------~~~~~~~~~~~ 172 (337)
T 3ble_A 104 WIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWS-----------NGFRNSPDYVK 172 (337)
T ss_dssp HHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHH-----------HHHHHCHHHHH
T ss_pred HHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCcCCHHHHH
Confidence 57788877664332 3 136799999999999999999998874322100 01236777665
Q ss_pred HHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe---
Q 029540 72 EFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF--- 143 (192)
Q Consensus 72 ~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI--- 143 (192)
+++ .+.|+|.+.++ -.=|.- .|.-=.++++.+++.+. ++||-+|+ ..|+.-...-.|++.|+.-|
T Consensus 173 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~p--~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~t 245 (337)
T 3ble_A 173 SLVEHLSKEHIERIFLP--DTLGVL---SPEETFQGVDSLIQKYP--DIHFEFHGHNDYDLSVANSLQAIRAGVKGLHAS 245 (337)
T ss_dssp HHHHHHHTSCCSEEEEE--CTTCCC---CHHHHHHHHHHHHHHCT--TSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHHHHHHcCCCEEEEe--cCCCCc---CHHHHHHHHHHHHHhcC--CCeEEEEecCCcchHHHHHHHHHHhCCCEEEEe
Confidence 554 46799987763 222222 25444667778877763 58888776 78999999999999999987
Q ss_pred ---------ecchHHHHHHHHHh-c-CCCCChHHHHH
Q 029540 144 ---------NVNTEVRKAYMDSL-S-RPKSDLIHLMA 169 (192)
Q Consensus 144 ---------Ni~T~l~~a~~~~~-~-~~~~~~~~~~~ 169 (192)
|..|+-...+.+.. . +...|+..+.+
T Consensus 246 v~GlG~~aGN~~~E~lv~~L~~~~g~~tgidl~~L~~ 282 (337)
T 3ble_A 246 INGLGERAGNTPLEALVTTIHDKSNSKTNINEIAITE 282 (337)
T ss_dssp GGGCSSTTCBCBHHHHHHHHHHHSSCCCCCCGGGHHH
T ss_pred cccccccccchhHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 56788777776665 2 23345554433
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0034 Score=51.36 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+.+++.|+|+|-+.-.+.++. . ...+++.+++|++.+ ++|+..||+-- +.+++.++.+.|+..|-
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~--~--~~~~~~~i~~i~~~~---~ipvi~~ggI~-~~~~~~~~~~~Gad~V~ 101 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVE--K--RKTMLELVEKVAEQI---DIPFTVGGGIH-DFETASELILRGADKVS 101 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS--H--HHHHHHHHHHHHTTC---CSCEEEESSCC-SHHHHHHHHHTTCSEEE
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhc--C--CcccHHHHHHHHHhC---CCCEEEeCCCC-CHHHHHHHHHcCCCEEE
Confidence 5888877778899999999986554432 1 334677888888766 69999999994 55679999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+++.+..
T Consensus 102 lg~~~l~ 108 (253)
T 1thf_D 102 INTAAVE 108 (253)
T ss_dssp ESHHHHH
T ss_pred EChHHHh
Confidence 9998753
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.13 Score=42.90 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=95.4
Q ss_pred hhhhcCCCEeEeeCCC---------CCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCccc--
Q 029540 2 EAIVLGFDSLMVDGSH---------LPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVE-- 58 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~---------l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~-- 58 (192)
+|++.|-+.|-+=--. ++.++-++..+++.++|+.+|+.+=- ++| |++ .+|.....
T Consensus 51 ~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA~~~gAdGVHLg-~~dl~~~~~r 129 (243)
T 3o63_A 51 AALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDRADIARAAGADVLHLG-QRDLPVNVAR 129 (243)
T ss_dssp HHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEEC-TTSSCHHHHH
T ss_pred HHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHHHHhCCCEEEec-CCcCCHHHHH
Confidence 5788999999885444 78899999999999999999875432 223 222 22211000
Q ss_pred -------cccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029540 59 -------DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 59 -------~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
.....-.+++|+++ ..+.|+|.+.+ |++.-.. +++.+.+.++.|+++.+... .++|+|-=||- ..+
T Consensus 130 ~~~~~~~~iG~S~ht~~Ea~~-A~~~GaDyI~v--gpvf~T~tK~~~~~~gl~~l~~~~~~~~-~~iPvvAiGGI--~~~ 203 (243)
T 3o63_A 130 QILAPDTLIGRSTHDPDQVAA-AAAGDADYFCV--GPCWPTPTKPGRAAPGLGLVRVAAELGG-DDKPWFAIGGI--NAQ 203 (243)
T ss_dssp HHSCTTCEEEEEECSHHHHHH-HHHSSCSEEEE--CCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC--CTT
T ss_pred HhhCCCCEEEEeCCCHHHHHH-HhhCCCCEEEE--cCccCCCCCCCcchhhHHHHHHHHHhcc-CCCCEEEecCC--CHH
Confidence 00111368899877 55689999886 4543211 11124578999999987620 16999988855 678
Q ss_pred HHHHHHhcCCeEeecchHHH
Q 029540 131 LIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~ 150 (192)
++..+.+.|+.=|=+.+.+.
T Consensus 204 ni~~~~~aGa~gvav~sai~ 223 (243)
T 3o63_A 204 RLPAVLDAGARRIVVVRAIT 223 (243)
T ss_dssp THHHHHHTTCCCEEESHHHH
T ss_pred HHHHHHHcCCCEEEEeHHHh
Confidence 89999999999999999875
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0034 Score=51.31 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=62.3
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.|.||.+..+.+++.|+|+|-+..-+. .+.+ .+.. +.+++|++.+ ++|+..||+--.|+ ++..+++.|+..
T Consensus 30 ~~~d~~~~a~~~~~~Gad~i~v~~~d~--~~~~-~~~~--~~i~~i~~~~---~ipv~v~ggI~~~~-~~~~~l~~Gad~ 100 (244)
T 1vzw_A 30 SYGSPLEAALAWQRSGAEWLHLVDLDA--AFGT-GDNR--ALIAEVAQAM---DIKVELSGGIRDDD-TLAAALATGCTR 100 (244)
T ss_dssp BCCCHHHHHHHHHHTTCSEEEEEEHHH--HHTS-CCCH--HHHHHHHHHC---SSEEEEESSCCSHH-HHHHHHHTTCSE
T ss_pred ecCCHHHHHHHHHHcCCCEEEEecCch--hhcC-CChH--HHHHHHHHhc---CCcEEEECCcCCHH-HHHHHHHcCCCE
Confidence 466998888888899999999875332 2222 1322 8889998887 69999999987655 699999999999
Q ss_pred eecchHHHH
Q 029540 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
|-+++++..
T Consensus 101 V~lg~~~l~ 109 (244)
T 1vzw_A 101 VNLGTAALE 109 (244)
T ss_dssp EEECHHHHH
T ss_pred EEECchHhh
Confidence 999997653
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.049 Score=46.62 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++++++.. .+.|+|.+-+. |...|.+.+.....++++|+++++.+ ++|++.=||-. +.+++.+++..|..=|-
T Consensus 126 ~t~~~a~~~-~~~GaD~i~v~-g~~~GG~~G~~~~~~~~~l~~v~~~~---~iPviaaGGI~-~~~~v~~al~~GAdgV~ 199 (328)
T 2gjl_A 126 TAVRHALKA-ERLGVDAVSID-GFECAGHPGEDDIPGLVLLPAAANRL---RVPIIASGGFA-DGRGLVAALALGADAIN 199 (328)
T ss_dssp SSHHHHHHH-HHTTCSEEEEE-CTTCSBCCCSSCCCHHHHHHHHHTTC---CSCEEEESSCC-SHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHH-HHcCCCEEEEE-CCCCCcCCCCccccHHHHHHHHHHhc---CCCEEEECCCC-CHHHHHHHHHcCCCEEE
Confidence 678888874 46899999874 44444333211225788899998877 69999998544 35679999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 200 vGs~~~~ 206 (328)
T 2gjl_A 200 MGTRFLA 206 (328)
T ss_dssp ESHHHHT
T ss_pred ECHHHHc
Confidence 9998754
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0029 Score=51.53 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=61.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.+|.+..+.+++.|+|+|-+..-+. .+.+ .+ .++.+++|++.+ ++|+..||+--.|+ ++..+++.|+..|
T Consensus 30 ~~d~~~~a~~~~~~Gad~i~v~~~d~--~~~~-~~--~~~~i~~i~~~~---~ipv~v~ggi~~~~-~~~~~l~~Gad~V 100 (244)
T 2y88_A 30 YGSAVDAALGWQRDGAEWIHLVDLDA--AFGR-GS--NHELLAEVVGKL---DVQVELSGGIRDDE-SLAAALATGCARV 100 (244)
T ss_dssp EEEHHHHHHHHHHTTCSEEEEEEHHH--HTTS-CC--CHHHHHHHHHHC---SSEEEEESSCCSHH-HHHHHHHTTCSEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEEcCcc--cccC-CC--hHHHHHHHHHhc---CCcEEEECCCCCHH-HHHHHHHcCCCEE
Confidence 45888887788888999999875332 2332 23 338899999887 69999999987655 6999999999999
Q ss_pred ecchHHHH
Q 029540 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
-+++++..
T Consensus 101 ~lg~~~l~ 108 (244)
T 2y88_A 101 NVGTAALE 108 (244)
T ss_dssp EECHHHHH
T ss_pred EECchHhh
Confidence 99998653
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.046 Score=46.56 Aligned_cols=116 Identities=21% Similarity=0.197 Sum_probs=89.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|-+.|.++.+.|+. ...++++++||.+|..+=.|+ .+++|+++-+ +.|.|.
T Consensus 137 ea~~~GAD~VlLi~a~L~~----~~l~~l~~~a~~lGl~~lvev-------------------h~~eEl~~A~-~~ga~i 192 (272)
T 3tsm_A 137 EARSWGADCILIIMASVDD----DLAKELEDTAFALGMDALIEV-------------------HDEAEMERAL-KLSSRL 192 (272)
T ss_dssp HHHHTTCSEEEEETTTSCH----HHHHHHHHHHHHTTCEEEEEE-------------------CSHHHHHHHT-TSCCSE
T ss_pred HHHHcCCCEEEEcccccCH----HHHHHHHHHHHHcCCeEEEEe-------------------CCHHHHHHHH-hcCCCE
Confidence 5778999999999999975 357899999999998766653 3457776644 679998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+.--+.+ .-..|++...++...+.. ++|+|- .||+ +.++++++.++|+.=|=|++.+.
T Consensus 193 IGinnr~l~------t~~~dl~~~~~L~~~ip~-~~~vIa--esGI~t~edv~~l~~~Ga~gvLVG~alm 253 (272)
T 3tsm_A 193 LGVNNRNLR------SFEVNLAVSERLAKMAPS-DRLLVG--ESGIFTHEDCLRLEKSGIGTFLIGESLM 253 (272)
T ss_dssp EEEECBCTT------TCCBCTHHHHHHHHHSCT-TSEEEE--ESSCCSHHHHHHHHTTTCCEEEECHHHH
T ss_pred EEECCCCCc------cCCCChHHHHHHHHhCCC-CCcEEE--ECCCCCHHHHHHHHHcCCCEEEEcHHHc
Confidence 866533332 245688988888887632 477775 5567 77889999999999999999885
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=96.66 E-value=0.037 Score=48.63 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=90.3
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|+++||+-|=+.+++ -+++...+...++++-.++. |- .|-. +|...+. ...
T Consensus 169 ~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~v---rls~~~~-~~~-- 242 (364)
T 1vyr_A 169 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGI---RVSPIGT-FQN-- 242 (364)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEE---EECCSSC-BTT--
T ss_pred HHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEE---EEccccc-ccc--
Confidence 5789999999998764 13788889999999888762 21 1111 1111110 000
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
....-.+++++.+| +++.|+|+|.++.|+.++. |..+++.+++|++.+ ++|++.=|+- +.++..+++
T Consensus 243 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~-----~~~~~~~~~~v~~~~---~iPvi~~Ggi--t~~~a~~~l 312 (364)
T 1vyr_A 243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG-----KPYSEAFRQKVRERF---HGVIIGAGAY--TAEKAEDLI 312 (364)
T ss_dssp BCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC-----CCCCHHHHHHHHHHC---CSEEEEESSC--CHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC-----CcccHHHHHHHHHHC---CCCEEEECCc--CHHHHHHHH
Confidence 00001245565555 4567999999998876543 224678889999988 6999988875 789999999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.=|=+++.+.
T Consensus 313 ~~g~aD~V~~gR~~l 327 (364)
T 1vyr_A 313 GKGLIDAVAFGRDYI 327 (364)
T ss_dssp HTTSCSEEEESHHHH
T ss_pred HCCCccEEEECHHHH
Confidence 998 88888888764
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.061 Score=47.01 Aligned_cols=134 Identities=12% Similarity=0.157 Sum_probs=91.1
Q ss_pred hhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccc
Q 029540 2 EAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVE 58 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~ 58 (192)
+|.++||+-|-+-+.+ . ++|...+...||++-.++. +..|-.-|..-.-.++
T Consensus 151 ~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~----- 225 (343)
T 3kru_A 151 RANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEG----- 225 (343)
T ss_dssp HHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTT-----
T ss_pred hccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhcc-----
Confidence 6889999999998642 1 5788899999999998864 3444443332110111
Q ss_pred cccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 59 DYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 59 ~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
-.+++++.+|+ ++. +|+|-++.|..........|..+++.+++|++.+ ++|++.=|+-. +.++..++
T Consensus 226 -----g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~-t~e~Ae~~ 295 (343)
T 3kru_A 226 -----GINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRC---NIKTSAVGLIT-TQELAEEI 295 (343)
T ss_dssp -----SCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCEEEEESSCC-CHHHHHHH
T ss_pred -----CccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhc---Ccccceeeeee-HHHHHHHH
Confidence 12455555554 456 9999998765543111112557889999999998 69998887543 46778899
Q ss_pred HhcC-CeEeecchHHH
Q 029540 136 IERG-VRKFNVNTEVR 150 (192)
Q Consensus 136 i~~G-i~KINi~T~l~ 150 (192)
++.| +.=|=+++.+.
T Consensus 296 l~~G~aD~V~iGR~~l 311 (343)
T 3kru_A 296 LSNERADLVALGRELL 311 (343)
T ss_dssp HHTTSCSEEEESHHHH
T ss_pred HhchhhHHHHHHHHHh
Confidence 9988 77888887763
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.042 Score=47.74 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=90.0
Q ss_pred hhhcCCCEe-EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 3 AIVLGFDSL-MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~~GFtSV-M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
|...|.+.| .+|- -.|++...+++++|++.|..|+.-+-..++..+. +..+ +.+.+ + +.|+|.
T Consensus 96 a~~~Gvd~~ri~~~-----~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~------~~~l---~~~~~-~-~~G~~~ 159 (320)
T 3dxi_A 96 PIIGLVDMIRIAID-----PQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEM------NGFL---SKLKA-I-DKIADL 159 (320)
T ss_dssp GGTTTCSEEEEEEC-----GGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGS------TTSG---GGGGG-G-TTTCSE
T ss_pred hhhcCCCEEEEEec-----HHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCH------HHHH---HHHHH-h-hCCCCE
Confidence 445677666 3441 1379999999999999999998766543222110 0011 12222 2 359998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------ecch
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------NVNT 147 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------Ni~T 147 (192)
+.+. -.=|.- .|.-=.++++.+++.+ ++||-+|. ..|+.....-.|++.|+.-| |..|
T Consensus 160 i~l~--Dt~G~~---~P~~~~~lv~~l~~~~---~~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~~~GN~~~ 231 (320)
T 3dxi_A 160 FCMV--DSFGGI---TPKEVKNLLKEVRKYT---HVPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGRGAGNLKM 231 (320)
T ss_dssp EEEE--CTTSCC---CHHHHHHHHHHHHHHC---CSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBH
T ss_pred EEEC--cccCCC---CHHHHHHHHHHHHHhC---CCeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCCcccchhH
Confidence 7765 222321 2443456677787776 58888875 67888999999999999887 7788
Q ss_pred HHHHHHHHHhcCCCCChH
Q 029540 148 EVRKAYMDSLSRPKSDLI 165 (192)
Q Consensus 148 ~l~~a~~~~~~~~~~~~~ 165 (192)
+....+.+.......|+.
T Consensus 232 E~lv~~L~~~~~~~~dl~ 249 (320)
T 3dxi_A 232 ELLLTYLNKHHGLNVDFN 249 (320)
T ss_dssp HHHHHHHHHHSCCCCCHH
T ss_pred HHHHHHHHhccCCCcCHH
Confidence 888777776334444554
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.028 Score=49.83 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=88.1
Q ss_pred hhh-hcCCCEeEeeCCC---------------------C-CHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCc
Q 029540 2 EAI-VLGFDSLMVDGSH---------------------L-PFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLT 56 (192)
Q Consensus 2 ~ai-~~GFtSVM~D~S~---------------------l-~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~ 56 (192)
+|+ ++||+-|=+.+.+ - +++...+...++++-.++. |- .|-.= |.. .+...
T Consensus 182 ~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vR---is~-~~~~~ 257 (379)
T 3aty_A 182 NAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLR---ISP-LNGVH 257 (379)
T ss_dssp HHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEE---ECT-TCCGG
T ss_pred HHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEE---ECc-ccccc
Confidence 678 8999999998764 1 7888899999999988752 21 11111 111 11000
Q ss_pred cccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029540 57 VEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 57 ~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
... .-.+++++.+| +++.|+|+|-++.|+.+. +. .| .+ +++|++.+ ++|++.=|+- +.++..
T Consensus 258 --~~~-~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~-~~---~~-~~~ir~~~---~iPvi~~G~i--t~~~a~ 322 (379)
T 3aty_A 258 --GMI-DSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQ-IG---DV-VAWVRGSY---SGVKISNLRY--DFEEAD 322 (379)
T ss_dssp --GCC-CSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CC-CC---CH-HHHHHTTC---CSCEEEESSC--CHHHHH
T ss_pred --cCC-CCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CC-cc---HH-HHHHHHHC---CCcEEEECCC--CHHHHH
Confidence 000 01245566665 456799999999987543 11 12 26 88899888 6999988875 788999
Q ss_pred HHHhcC-CeEeecchHHH
Q 029540 134 GCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 134 ~~i~~G-i~KINi~T~l~ 150 (192)
++++.| +.=|.+++.+.
T Consensus 323 ~~l~~g~aD~V~igR~~l 340 (379)
T 3aty_A 323 QQIREGKVDAVAFGAKFI 340 (379)
T ss_dssp HHHHTTSCSEEEESHHHH
T ss_pred HHHHcCCCeEEEecHHHH
Confidence 999998 88999998874
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.027 Score=49.14 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=86.7
Q ss_pred hhhhcCCCEeEeeCC-----------CCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029540 2 EAIVLGFDSLMVDGS-----------HLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----------~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
.+.++||+-|-+-++ .-.++.+.+...++++-.++ .+++|-.=+- +|. .+. ..+.+..+
T Consensus 78 ~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR-~g~-~~~-------~~~~~~~~ 148 (350)
T 3b0p_A 78 IGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR-LGL-EGK-------ETYRGLAQ 148 (350)
T ss_dssp HHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEE-SCB-TTC-------CCHHHHHH
T ss_pred HHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEe-cCc-Ccc-------ccHHHHHH
Confidence 466789999988753 11345667778888777765 4666654221 211 110 01112223
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 70 AEEFIDETDIDALAVCIGNVHGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
..+-+++.|+|.|.|.-++.-+.|.+. .|..+++.+++|++.+. ++|++.=||-. +.+++.++++ |+.-|-+
T Consensus 149 ~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~--~iPVianGgI~-s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 149 SVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP--QLTFVTNGGIR-SLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCT--TSEEEEESSCC-SHHHHHHHHT-TSSEEEE
T ss_pred HHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC--CCeEEEECCcC-CHHHHHHHHh-CCCEEEE
Confidence 333456789999999876654344321 24579999999998872 49999988654 4567888888 9999999
Q ss_pred chHHH
Q 029540 146 NTEVR 150 (192)
Q Consensus 146 ~T~l~ 150 (192)
++.+.
T Consensus 225 GRa~l 229 (350)
T 3b0p_A 225 GRAVY 229 (350)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99873
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.073 Score=46.39 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCC-C-----C--CC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-P-----N--LK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~-p-----~--ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++++++. ..+.|+|+|-+. |..-|.+.+.. + . +. ++++++|++.+ ++|++.=||-. ..+++.++
T Consensus 153 ~t~~~a~~-a~~~GaD~i~v~-g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~---~iPViaaGGI~-~~~~~~~~ 226 (369)
T 3bw2_A 153 TTPEEARA-VEAAGADAVIAQ-GVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV---DIPVVAAGGIM-RGGQIAAV 226 (369)
T ss_dssp SSHHHHHH-HHHTTCSEEEEE-CTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC---SSCEEEESSCC-SHHHHHHH
T ss_pred CCHHHHHH-HHHcCCCEEEEe-CCCcCCcCCCcccccccccccccHHHHHHHHHHhc---CceEEEECCCC-CHHHHHHH
Confidence 67888876 457899999883 32222222110 1 1 44 88899998877 69999988443 56779999
Q ss_pred HhcCCeEeecchHHH
Q 029540 136 IERGVRKFNVNTEVR 150 (192)
Q Consensus 136 i~~Gi~KINi~T~l~ 150 (192)
+..|..=|-++|.+.
T Consensus 227 l~~GAd~V~vGs~~~ 241 (369)
T 3bw2_A 227 LAAGADAAQLGTAFL 241 (369)
T ss_dssp HHTTCSEEEESHHHH
T ss_pred HHcCCCEEEEChHHh
Confidence 999999999999884
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.051 Score=50.74 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=89.7
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVE 58 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~ 58 (192)
+|.++||+-|-+.+++ -+++...+...++++-.++. +..|-.=|..- +...
T Consensus 149 ~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~----~~~~-- 222 (671)
T 1ps9_A 149 LAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSML----DLVE-- 222 (671)
T ss_dssp HHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEE----CCST--
T ss_pred HHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcc----ccCC--
Confidence 6889999999998765 14688889999999988863 23332211110 0000
Q ss_pred cccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCC----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH
Q 029540 59 DYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPS----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL 131 (192)
Q Consensus 59 ~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~ 131 (192)
.-.+++++.+| +++.|+|+|.++.|+....++. ..+...++.+++|++.+ ++|++.=|+-- +.++
T Consensus 223 ----~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~iPvi~~Ggi~-~~~~ 294 (671)
T 1ps9_A 223 ----DGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV---SLPLVTTNRIN-DPQV 294 (671)
T ss_dssp ----TCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC---SSCEEECSSCC-SHHH
T ss_pred ----CCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc---CceEEEeCCCC-CHHH
Confidence 01245555555 4568999999998875443321 11234568888898877 69988776432 6788
Q ss_pred HHHHHhcC-CeEeecchHHH
Q 029540 132 IKGCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 132 ~~~~i~~G-i~KINi~T~l~ 150 (192)
..++++.| +.=|-+++.+.
T Consensus 295 a~~~l~~g~aD~V~~gR~~l 314 (671)
T 1ps9_A 295 ADDILSRGDADMVSMARPFL 314 (671)
T ss_dssp HHHHHHTTSCSEEEESTHHH
T ss_pred HHHHHHcCCCCEEEeCHHHH
Confidence 99999998 88899988774
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.07 Score=45.96 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.+++++|+.. .+.|+|.+-+. |..+|.+.+ +..++++|.++.+.+ ++|++.=||-+. .+++.+++.+|..=|
T Consensus 131 v~s~~~a~~a-~~~GaD~i~v~-g~~~GG~~G--~~~~~~ll~~i~~~~---~iPviaaGGI~~-~~dv~~al~~GA~gV 202 (326)
T 3bo9_A 131 VASDSLARMV-ERAGADAVIAE-GMESGGHIG--EVTTFVLVNKVSRSV---NIPVIAAGGIAD-GRGMAAAFALGAEAV 202 (326)
T ss_dssp ESSHHHHHHH-HHTTCSCEEEE-CTTSSEECC--SSCHHHHHHHHHHHC---SSCEEEESSCCS-HHHHHHHHHHTCSEE
T ss_pred cCCHHHHHHH-HHcCCCEEEEE-CCCCCccCC--CccHHHHHHHHHHHc---CCCEEEECCCCC-HHHHHHHHHhCCCEE
Confidence 3678888874 46799998875 444555543 334889999998877 699999995553 567999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
-++|.+.
T Consensus 203 ~vGs~~~ 209 (326)
T 3bo9_A 203 QMGTRFV 209 (326)
T ss_dssp EESHHHH
T ss_pred EechHHH
Confidence 9999885
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.21 Score=43.05 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCC---------CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKY---------PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y---------~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
.+++++|++.+ +.|+|.+.++. ||.. .+ .|.+.++.|.++.+.+ ++|++.=||-..+.| +.+
T Consensus 157 v~s~e~A~~a~-~aGad~Ivvs~---hgG~~~~~~~~~~~g-~~g~~~~~l~~v~~~~---~ipVIa~GGI~~g~D-v~k 227 (336)
T 1ypf_A 157 VGTPEAVRELE-NAGADATKVGI---GPGKVCITKIKTGFG-TGGWQLAALRWCAKAA---SKPIIADGGIRTNGD-VAK 227 (336)
T ss_dssp ECSHHHHHHHH-HHTCSEEEECS---SCSTTCHHHHHHSCS-STTCHHHHHHHHHHTC---SSCEEEESCCCSTHH-HHH
T ss_pred cCCHHHHHHHH-HcCCCEEEEec---CCCceeecccccCcC-CchhHHHHHHHHHHHc---CCcEEEeCCCCCHHH-HHH
Confidence 46789988855 78999998843 5532 22 2444688889998877 699999999887766 778
Q ss_pred HHhcCCeEeecchHHH
Q 029540 135 CIERGVRKFNVNTEVR 150 (192)
Q Consensus 135 ~i~~Gi~KINi~T~l~ 150 (192)
++.+|..=+-++|.+.
T Consensus 228 alalGAdaV~iGr~~l 243 (336)
T 1ypf_A 228 SIRFGATMVMIGSLFA 243 (336)
T ss_dssp HHHTTCSEEEESGGGT
T ss_pred HHHcCCCEEEeChhhh
Confidence 8899999999999997
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.08 Score=42.77 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=74.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++++|.+-|-+++.......+ ....++++.+++. ++.|=.+ ..++++++.. .+.|+
T Consensus 96 ~~~~~Gad~V~l~~~~~~~~~~-~~~~~~i~~i~~~~~~~~v~~~-------------------~~t~~ea~~a-~~~Ga 154 (234)
T 1yxy_A 96 QLAALNIAVIAMDCTKRDRHDG-LDIASFIRQVKEKYPNQLLMAD-------------------ISTFDEGLVA-HQAGI 154 (234)
T ss_dssp HHHTTTCSEEEEECCSSCCTTC-CCHHHHHHHHHHHCTTCEEEEE-------------------CSSHHHHHHH-HHTTC
T ss_pred HHHHcCCCEEEEcccccCCCCC-ccHHHHHHHHHHhCCCCeEEEe-------------------CCCHHHHHHH-HHcCC
Confidence 4667888888888776521100 0113445555543 3332221 2457787764 47899
Q ss_pred cEEEEecCcC-CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHH
Q 029540 80 DALAVCIGNV-HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 80 D~LAvaiGt~-HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
|++...+... .|. .. ....+++.++++++. ++|++-=| |+. .+++.++.+.|+.-+=++|.+..
T Consensus 155 d~i~~~v~g~~~~~-~~-~~~~~~~~i~~~~~~----~ipvia~G--GI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 155 DFVGTTLSGYTPYS-RQ-EAGPDVALIEALCKA----GIAVIAEG--KIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp SEEECTTTTSSTTS-CC-SSSCCHHHHHHHHHT----TCCEEEES--CCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CEEeeeccccCCCC-cC-CCCCCHHHHHHHHhC----CCCEEEEC--CCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 9984222211 111 11 134578888888765 49999877 565 78899999999999999998753
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.05 Score=48.54 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=89.8
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-C-CeEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-G-MLVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-g-v~VEaElG~i~g~e~~~~~~~ 59 (192)
+|.++||+-|-|.+.+ -++|...+...||++-.++. | ..|-.-|. ..+. .....
T Consensus 179 ~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls---~~~~-~~g~~ 254 (402)
T 2hsa_B 179 NAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVS---PAID-HLDAM 254 (402)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC---SSCC-STTCC
T ss_pred HHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEec---cccc-cCCCC
Confidence 6889999999999965 14788889999999888752 2 12222222 1111 00000
Q ss_pred ccccCCCHHHHHHHh---hhhC------CcEEEEecCcCCCCCCCCCC------C-CCHHHHHHHHhhhccCCccEEeec
Q 029540 60 YEAKLTDVNQAEEFI---DETD------IDALAVCIGNVHGKYPSSGP------N-LKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 60 ~~~~~T~peea~~Fv---~~Tg------vD~LAvaiGt~HG~y~~~~p------~-ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
.-.+++++.+|+ ++.| +|+|-++-|+..+.|.. | . -+.+.+++|++.+ ++|++.=|
T Consensus 255 ---~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vk~~~---~iPvi~~G 326 (402)
T 2hsa_B 255 ---DSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQT--EAGRLGSEEEEARLMRTLRNAY---QGTFICSG 326 (402)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTS--SSTTTTHHHHHHHHHHHHHHHC---SSCEEEES
T ss_pred ---CCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCC--ccccccCCcchHHHHHHHHHHC---CCCEEEeC
Confidence 012345555554 5678 99999999987653322 2 1 2466778888888 69999888
Q ss_pred CCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 124 ASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 124 gSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
+- +.++..++++.| +.=|=++..+
T Consensus 327 ~i--~~~~a~~~l~~g~aD~V~igR~~ 351 (402)
T 2hsa_B 327 GY--TRELGIEAVAQGDADLVSYGRLF 351 (402)
T ss_dssp SC--CHHHHHHHHHTTSCSEEEESHHH
T ss_pred CC--CHHHHHHHHHCCCCceeeecHHH
Confidence 65 678899999998 7788888776
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.035 Score=48.99 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=84.8
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|.++||+-|-|.+++ =++|.-.+...||++-.++. |- .|-.- +...+. .. .
T Consensus 169 ~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vR---ls~~~~-~~--g 242 (361)
T 3gka_A 169 NARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVH---LAPRGD-AH--T 242 (361)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEE---ECTTCC-SS--S
T ss_pred HHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEe---cccccc-cC--C
Confidence 6889999999999987 14777788888888887752 21 22222 222111 00 0
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.. .-.+.+++.++ +++.|+|+|-++-|+ .| + +.+++|++.+ ++|++.=|+ ++.++..+++
T Consensus 243 ~~-~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-~~------~----~~~~~ik~~~---~iPvi~~Gg--it~e~a~~~l 305 (361)
T 3gka_A 243 MG-DSDPAATFGHVARELGRRRIAFLFARESF-GG------D----AIGQQLKAAF---GGPFIVNEN--FTLDSAQAAL 305 (361)
T ss_dssp CC-CSCHHHHHHHHHHHHHHTTCSEEEEECCC-ST------T----CCHHHHHHHH---CSCEEEESS--CCHHHHHHHH
T ss_pred CC-CCCcHHHHHHHHHHHHHcCCCEEEECCCC-CC------H----HHHHHHHHHc---CCCEEEeCC--CCHHHHHHHH
Confidence 00 01123444444 456899999999887 11 2 3478899888 699998886 4888999999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.=|=++..+.
T Consensus 306 ~~G~aD~V~iGR~~l 320 (361)
T 3gka_A 306 DAGQADAVAWGKLFI 320 (361)
T ss_dssp HTTSCSEEEESHHHH
T ss_pred HcCCccEEEECHHhH
Confidence 998 77888888763
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.044 Score=48.34 Aligned_cols=126 Identities=11% Similarity=0.097 Sum_probs=85.5
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|.++||+-|-|-+++ =++|.-.+...||++-.++. |- .|-.-|. ..+. .. .
T Consensus 161 ~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls---~~~~-~~--g 234 (362)
T 4ab4_A 161 NAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLA---PRAD-AH--D 234 (362)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC---TTCC-SS--S
T ss_pred HHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEee---cccc-cc--c
Confidence 6899999999999987 14788888889998887753 21 2222222 2111 00 0
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.. .-++.+++.+| +++.|+|+|-++-|+ .| + +.+++|++.+ ++|++.=|+- +.++..+++
T Consensus 235 ~~-~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-~~------~----~~~~~ik~~~---~iPvi~~Ggi--t~e~a~~~l 297 (362)
T 4ab4_A 235 MG-DADRAETFTYVARELGKRGIAFICSRERE-AD------D----SIGPLIKEAF---GGPYIVNERF--DKASANAAL 297 (362)
T ss_dssp CC-CTTHHHHHHHHHHHHHHTTCSEEEEECCC-CT------T----CCHHHHHHHH---CSCEEEESSC--CHHHHHHHH
T ss_pred cC-CCCcHHHHHHHHHHHHHhCCCEEEECCCC-CC------H----HHHHHHHHHC---CCCEEEeCCC--CHHHHHHHH
Confidence 00 01123445555 456899999999887 21 2 3478899888 6999988874 788999999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.=|=++..+.
T Consensus 298 ~~g~aD~V~iGR~~l 312 (362)
T 4ab4_A 298 ASGKADAVAFGVPFI 312 (362)
T ss_dssp HTTSCSEEEESHHHH
T ss_pred HcCCccEEEECHHhH
Confidence 998 77888888763
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.088 Score=46.43 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=80.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|+. +.+.|+|.+.|+- ||........-.++.|.+|.+.+.. ++|+..=||--.+ +++.+++.+|..=|.
T Consensus 226 ~~~e~A~~-a~~~GaD~I~vsn---~GG~~~d~~~~~~~~L~~i~~av~~-~ipVia~GGI~~g-~Dv~kaLalGA~aV~ 299 (352)
T 3sgz_A 226 LTKEDAEL-AMKHNVQGIVVSN---HGGRQLDEVSASIDALREVVAAVKG-KIEVYMDGGVRTG-TDVLKALALGARCIF 299 (352)
T ss_dssp CSHHHHHH-HHHTTCSEEEECC---GGGTSSCSSCCHHHHHHHHHHHHTT-SSEEEEESSCCSH-HHHHHHHHTTCSEEE
T ss_pred CcHHHHHH-HHHcCCCEEEEeC---CCCCccCCCccHHHHHHHHHHHhCC-CCeEEEECCCCCH-HHHHHHHHcCCCEEE
Confidence 67888887 4588999999873 5542111123478899999887742 4999999988765 558888899999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
++|.+..+.... -..-.....+.+++.++..|.+.|..
T Consensus 300 iGr~~l~~l~~~-------G~~gv~~~l~~l~~el~~~m~~~G~~ 337 (352)
T 3sgz_A 300 LGRPILWGLACK-------GEDGVKEVLDILTAELHRCMTLSGCQ 337 (352)
T ss_dssp ESHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ECHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988664321 01223345677788888889988864
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.048 Score=50.69 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=85.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|+++|.+.|-+=.|.-++ +|+ ++.+++|++.|..|++-+... ++ ..++|+.+.++++ +.|
T Consensus 125 ~a~~aGvd~vrIf~s~sd~-~ni---~~~i~~ak~~G~~v~~~i~~~----~~--------~~~~~e~~~~~a~~l~~~G 188 (539)
T 1rqb_A 125 KSAENGMDVFRVFDAMNDP-RNM---AHAMAAVKKAGKHAQGTICYT----IS--------PVHTVEGYVKLAGQLLDMG 188 (539)
T ss_dssp HHHHTTCCEEEECCTTCCT-HHH---HHHHHHHHHTTCEEEEEEECC----CS--------TTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCEEEEEEehhHH-HHH---HHHHHHHHHCCCeEEEEEEee----eC--------CCCCHHHHHHHHHHHHHcC
Confidence 4677888766544444454 555 688999999999998877543 21 2457888777755 579
Q ss_pred CcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 79 IDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 79 vD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+|.|.+. +|.. .|.-=.++++.+++.+. .++||-+|+ .+|+.-...-.|++.|+.-|.
T Consensus 189 ad~I~L~DT~G~~-------~P~~v~~lv~~l~~~~p-~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD 250 (539)
T 1rqb_A 189 ADSIALKDMAALL-------KPQPAYDIIKAIKDTYG-QKTQINLHCHSTTGVTEVSLMKAIEAGVDVVD 250 (539)
T ss_dssp CSEEEEEETTCCC-------CHHHHHHHHHHHHHHHC-TTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEE
T ss_pred CCEEEeCCCCCCc-------CHHHHHHHHHHHHHhcC-CCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 9987764 4332 25545677788887773 137887776 899999999999999999884
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.081 Score=42.21 Aligned_cols=137 Identities=11% Similarity=0.126 Sum_probs=83.7
Q ss_pred hhhhcCCCEeEee---CCCCCH---HHHHHHHHHHHHHHHhCCCeEEE--e------cc----ccccCCCCC-ccc-c-c
Q 029540 2 EAIVLGFDSLMVD---GSHLPF---KDNISHTKYISFLAHSKGMLVEA--E------LG----RLSGTEDGL-TVE-D-Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D---~S~l~~---eeNi~~Tk~vv~~Ah~~gv~VEa--E------lG----~i~g~e~~~-~~~-~-~ 60 (192)
+++++|.+.|-++ +|...+ .++++..+ ++++.+|+.|-. . .| +++ ..+.. ... . .
T Consensus 39 ~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~---~~~~~~~v~v~v~~~~~~a~~~gad~v~l~-~~~~~~~~~~~~~ 114 (227)
T 2tps_A 39 KALKGGATLYQFREKGGDALTGEARIKFAEKAQ---AACREAGVPFIVNDDVELALNLKADGIHIG-QEDANAKEVRAAI 114 (227)
T ss_dssp HHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHH---HHHHHHTCCEEEESCHHHHHHHTCSEEEEC-TTSSCHHHHHHHH
T ss_pred HHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHH---HHHHHcCCeEEEcCHHHHHHHcCCCEEEEC-CCccCHHHHHHhc
Confidence 4678899999877 555556 55555444 444555554432 1 11 222 11110 000 0 0
Q ss_pred c-----ccCCCHHHHHHHhhhhCCcEEEEecCcCC-CCCCCC-CCCCCHHHHHHHHhhhccCC-ccEEeecCCCCCHHHH
Q 029540 61 E-----AKLTDVNQAEEFIDETDIDALAVCIGNVH-GKYPSS-GPNLKLDLLKDLHALSSKKG-VLLVLHGASGLSAELI 132 (192)
Q Consensus 61 ~-----~~~T~peea~~Fv~~TgvD~LAvaiGt~H-G~y~~~-~p~ld~~~L~~I~~~~~~~~-iPLVlHGgSG~~~e~~ 132 (192)
. -..++|+++.+ ..+.|+|.+-++ ++. ...+++ .+.++++.++++++.+ + +|++.=|| +..+++
T Consensus 115 g~~~~~~s~~t~~e~~~-a~~~g~d~v~~~--~v~~t~~~~~~~~~~~~~~l~~~~~~~---~~~pvia~GG--I~~~nv 186 (227)
T 2tps_A 115 GDMILGVSAHTMSEVKQ-AEEDGADYVGLG--PIYPTETKKDTRAVQGVSLIEAVRRQG---ISIPIVGIGG--ITIDNA 186 (227)
T ss_dssp TTSEEEEEECSHHHHHH-HHHHTCSEEEEC--CSSCCCSSSSCCCCCTTHHHHHHHHTT---CCCCEEEESS--CCTTTS
T ss_pred CCcEEEEecCCHHHHHH-HHhCCCCEEEEC--CCcCCCCCCCCCCccCHHHHHHHHHhC---CCCCEEEEcC--CCHHHH
Confidence 0 00268888766 447899998863 221 111111 2457899999998877 5 99999885 557789
Q ss_pred HHHHhcCCeEeecchHHH
Q 029540 133 KGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 133 ~~~i~~Gi~KINi~T~l~ 150 (192)
+++++.|..=|=++|.+.
T Consensus 187 ~~~~~~Ga~gv~vgs~i~ 204 (227)
T 2tps_A 187 APVIQAGADGVSMISAIS 204 (227)
T ss_dssp HHHHHTTCSEEEESHHHH
T ss_pred HHHHHcCCCEEEEhHHhh
Confidence 999999999999999885
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.054 Score=45.59 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=88.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh-CCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET-DID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T-gvD 80 (192)
+|..+|-+.|.++++.|+. ...++++++||.+|..+=.|+- +.+|+++- .+. |.|
T Consensus 118 ea~~~GAD~ilLi~a~l~~----~~l~~l~~~a~~lGl~~lvEv~-------------------~~eE~~~A-~~l~g~~ 173 (251)
T 1i4n_A 118 LASSVGADAILIIARILTA----EQIKEIYEAAEELGMDSLVEVH-------------------SREDLEKV-FSVIRPK 173 (251)
T ss_dssp HHHHTTCSEEEEEGGGSCH----HHHHHHHHHHHTTTCEEEEEEC-------------------SHHHHHHH-HTTCCCS
T ss_pred HHHHcCCCEEEEecccCCH----HHHHHHHHHHHHcCCeEEEEeC-------------------CHHHHHHH-HhcCCCC
Confidence 4678999999999999887 4578999999999887777632 34566553 456 999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.+.+..-+.|+ -..|++...++...+.. ++++|- .||+. .++++++.++ +.=|=|++.+..
T Consensus 174 iIGinnr~l~t------~~~d~~~~~~l~~~ip~-~~~vIa--EsGI~t~edv~~~~~~-a~avLVG~aimr 235 (251)
T 1i4n_A 174 IIGINTRDLDT------FEIKKNVLWELLPLVPD-DTVVVA--ESGIKDPRELKDLRGK-VNAVLVGTSIMK 235 (251)
T ss_dssp EEEEECBCTTT------CCBCTTHHHHHGGGSCT-TSEEEE--ESCCCCGGGHHHHTTT-CSEEEECHHHHH
T ss_pred EEEEeCccccc------CCCCHHHHHHHHHhCCC-CCEEEE--eCCCCCHHHHHHHHHh-CCEEEEcHHHcC
Confidence 99988766554 34577777777766531 366665 77885 8889999999 999999998853
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.039 Score=47.18 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCCcEEEEecCcCCCCCC
Q 029540 18 LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDIDALAVCIGNVHGKYP 94 (192)
Q Consensus 18 l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~ 94 (192)
.+.+|+++..++++++|++.|..|+.-+ ++ ...++|+.+.++++ +.|+|.+.++ -.=|.-
T Consensus 114 ~s~~e~l~~~~~~v~~a~~~g~~v~~~~------~d--------~~~~~~~~~~~~~~~~~~~G~~~i~l~--DT~G~~- 176 (293)
T 3ewb_X 114 MSRAEVLASIKHHISYARQKFDVVQFSP------ED--------ATRSDRAFLIEAVQTAIDAGATVINIP--DTVGYT- 176 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSCEEEEE------ET--------GGGSCHHHHHHHHHHHHHTTCCEEEEE--CSSSCC-
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEe------cc--------CCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCCC-
Confidence 4679999999999999999998887321 22 13588888777655 5799976554 333432
Q ss_pred CCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEe------------ecchHHHHHHHHH
Q 029540 95 SSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKF------------NVNTEVRKAYMDS 156 (192)
Q Consensus 95 ~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------Ni~T~l~~a~~~~ 156 (192)
.|.-=.++++.+++.+... ++||-+|+ ..|+.-...-.|++.|+.-| |..|+-...+...
T Consensus 177 --~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlGeraGN~~~E~vv~~L~~ 251 (293)
T 3ewb_X 177 --NPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGIGERAGNTALEEVAVALHI 251 (293)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCTTTCBCBHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeeccccccccccHhHHHHHHHHHh
Confidence 2443456677777766321 15676665 67899999999999999987 8888877666654
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.12 Score=44.97 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=89.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|.++|.+.|-+--|.-+. ...++++++|+++|+.|+.=+ ++ ...|+|+...+.++ +.|
T Consensus 101 ~a~~aGvd~v~I~~~~s~~----~~~~~~i~~ak~~G~~v~~~~------~~--------a~~~~~e~~~~ia~~~~~~G 162 (345)
T 1nvm_A 101 NAYQAGARVVRVATHCTEA----DVSKQHIEYARNLGMDTVGFL------MM--------SHMIPAEKLAEQGKLMESYG 162 (345)
T ss_dssp HHHHHTCCEEEEEEETTCG----GGGHHHHHHHHHHTCEEEEEE------ES--------TTSSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCcCEEEEEEeccHH----HHHHHHHHHHHHCCCEEEEEE------Ee--------CCCCCHHHHHHHHHHHHHCC
Confidence 5788999888776443333 346788999999999887654 11 13477877776654 469
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------e
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|++.+. +|+ |.- .|.-=.++++.+++.+. .++||.+|+ ..|+.-...-.|++.|+.-| |
T Consensus 163 a~~i~l~-DT~-G~~---~P~~v~~lv~~l~~~~~-~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~~aGN 236 (345)
T 1nvm_A 163 ATCIYMA-DSG-GAM---SMNDIRDRMRAFKAVLK-PETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGN 236 (345)
T ss_dssp CSEEEEE-CTT-CCC---CHHHHHHHHHHHHHHSC-TTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCB
T ss_pred CCEEEEC-CCc-Ccc---CHHHHHHHHHHHHHhcC-CCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhccCCccC
Confidence 9987765 222 221 24434566777777762 148998876 67888888999999998877 5
Q ss_pred cchHHHHHHHHHh
Q 029540 145 VNTEVRKAYMDSL 157 (192)
Q Consensus 145 i~T~l~~a~~~~~ 157 (192)
..|+...++.+..
T Consensus 237 ~~le~lv~~L~~~ 249 (345)
T 1nvm_A 237 APLEVFIAVAERL 249 (345)
T ss_dssp CBHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 6677666665543
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.047 Score=48.18 Aligned_cols=134 Identities=11% Similarity=0.082 Sum_probs=87.6
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|.++||+-|=+.+++ -+++...+...++++-.++. |- .|-.-|..-... .+..
T Consensus 175 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~-~g~~--- 250 (376)
T 1icp_A 175 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHY-NEAG--- 250 (376)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCT-TTCC---
T ss_pred HHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecccccc-CCCC---
Confidence 6889999999998865 13688888899998888752 21 233222211000 0000
Q ss_pred ccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 YEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.-.+++++.+|+ ++.|+|+|.++-|+.+..++. + .+++.+++|++.+ ++|++.=|+- +.++..+++
T Consensus 251 ---~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~--~-~~~~~~~~vr~~~---~iPvi~~G~i--~~~~a~~~l 319 (376)
T 1icp_A 251 ---DTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEK--I-ECTESLVPMRKAY---KGTFIVAGGY--DREDGNRAL 319 (376)
T ss_dssp ---CSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC---------CCCCSHHHHHHC---CSCEEEESSC--CHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCc--c-ccHHHHHHHHHHc---CCCEEEeCCC--CHHHHHHHH
Confidence 012345555554 568999999998876533321 1 2345678898888 6999988865 688999999
Q ss_pred hcC-CeEeecchHHH
Q 029540 137 ERG-VRKFNVNTEVR 150 (192)
Q Consensus 137 ~~G-i~KINi~T~l~ 150 (192)
+.| +.=|=++..+.
T Consensus 320 ~~g~aD~V~~gR~~l 334 (376)
T 1icp_A 320 IEDRADLVAYGRLFI 334 (376)
T ss_dssp HTTSCSEEEESHHHH
T ss_pred HCCCCcEEeecHHHH
Confidence 998 77888887763
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.044 Score=49.56 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=83.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++++|++.|.+|.++-.+...+...+++.+... ++.|=. | ..+++++|+.. .+.|+|+
T Consensus 244 ~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p--~~pvi~-----g-------------~~~t~e~a~~l-~~~G~d~ 302 (494)
T 1vrd_A 244 KLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYP--DLPVVA-----G-------------NVATPEGTEAL-IKAGADA 302 (494)
T ss_dssp HHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCT--TSCEEE-----E-------------EECSHHHHHHH-HHTTCSE
T ss_pred HHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCC--CceEEe-----C-------------CcCCHHHHHHH-HHcCCCE
Confidence 5788999999999887655555544444444321 455521 1 13678888665 4789999
Q ss_pred EEEecCcC-CC--CC-CC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNV-HG--KY-PS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~-HG--~y-~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|+.|.- |. .+ .+ +.| .++.|.++.+..+..++|+..=||-..+ +++.+++.+|..=+.++|.+.
T Consensus 303 I~v~~~~G~~~~~~~~~~~g~p--~~~~l~~v~~~~~~~~ipvia~GGI~~~-~di~kala~GAd~V~iGr~~l 373 (494)
T 1vrd_A 303 VKVGVGPGSICTTRVVAGVGVP--QLTAVMECSEVARKYDVPIIADGGIRYS-GDIVKALAAGAESVMVGSIFA 373 (494)
T ss_dssp EEECSSCSTTCHHHHHHCCCCC--HHHHHHHHHHHHHTTTCCEEEESCCCSH-HHHHHHHHTTCSEEEESHHHH
T ss_pred EEEcCCCCccccccccCCCCcc--HHHHHHHHHHHHhhcCCCEEEECCcCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 99855320 00 00 00 124 4677788877754447999998876654 569999999999999999984
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.093 Score=44.56 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=83.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|++.|.+ ..||+|| ..++++.|+++|+.+ +=-+ ..-|+++..++..+. +-++
T Consensus 120 ~~~~aGvdGvIi--pDlp~ee----~~~~~~~~~~~gl~~---I~lv-------------ap~t~~eri~~i~~~-~~gf 176 (271)
T 3nav_A 120 RCQKAGVDSVLI--ADVPTNE----SQPFVAAAEKFGIQP---IFIA-------------PPTASDETLRAVAQL-GKGY 176 (271)
T ss_dssp HHHHHTCCEEEE--TTSCGGG----CHHHHHHHHHTTCEE---EEEE-------------CTTCCHHHHHHHHHH-CCSC
T ss_pred HHHHCCCCEEEE--CCCCHHH----HHHHHHHHHHcCCeE---EEEE-------------CCCCCHHHHHHHHHH-CCCe
Confidence 688999999877 6899987 678999999999764 1111 122556667776655 4455
Q ss_pred EEE-ec-CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHHH
Q 029540 82 LAV-CI-GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 82 LAv-ai-Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
+-. |. |+. |.-.. .+.--.+.|++|++.+ ++|++. |.|++ .+++++++..|..=+=|+|.+-+...+
T Consensus 177 iY~vs~~GvT-G~~~~-~~~~~~~~v~~vr~~~---~~Pv~v--GfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~ 246 (271)
T 3nav_A 177 TYLLSRAGVT-GAETK-ANMPVHALLERLQQFD---APPALL--GFGISEPAQVKQAIEAGAAGAISGSAVVKIIET 246 (271)
T ss_dssp EEECCCC----------CCHHHHHHHHHHHHTT---CCCEEE--CSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHH
T ss_pred EEEEeccCCC-CcccC-CchhHHHHHHHHHHhc---CCCEEE--ECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 443 32 322 21111 1221246678888877 699998 67884 889999999999999999999776654
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.12 Score=43.66 Aligned_cols=124 Identities=16% Similarity=0.227 Sum_probs=83.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|++.|.+ ..+|+|| ..++.+.|+++|+.+ ..+- ..-|+++..++..+... ++
T Consensus 118 ~~~~aGvdgvii--~Dlp~ee----~~~~~~~~~~~gl~~----i~li------------aP~t~~eri~~i~~~~~-gf 174 (267)
T 3vnd_A 118 KAQAAGVDSVLI--ADVPVEE----SAPFSKAAKAHGIAP----IFIA------------PPNADADTLKMVSEQGE-GY 174 (267)
T ss_dssp HHHHHTCCEEEE--TTSCGGG----CHHHHHHHHHTTCEE----ECEE------------CTTCCHHHHHHHHHHCC-SC
T ss_pred HHHHcCCCEEEe--CCCCHhh----HHHHHHHHHHcCCeE----EEEE------------CCCCCHHHHHHHHHhCC-Cc
Confidence 578999999877 6789986 678999999998753 2221 12356677777766643 33
Q ss_pred EEE-e-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHHH
Q 029540 82 LAV-C-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 82 LAv-a-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
+-. | .|+. |.-.. .+.-..+.++++++.+ ++|++. |.|++ .+++++++..|..=+=++|.+.+...+
T Consensus 175 vY~vS~~GvT-G~~~~-~~~~~~~~v~~vr~~~---~~pv~v--GfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~~ 244 (267)
T 3vnd_A 175 TYLLSRAGVT-GTESK-AGEPIENILTQLAEFN---APPPLL--GFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEA 244 (267)
T ss_dssp EEESCCCCCC----------CHHHHHHHHHTTT---CCCEEE--CSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred EEEEecCCCC-CCccC-CcHHHHHHHHHHHHhc---CCCEEE--ECCcCCHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence 333 2 2222 11111 1222357788888876 699998 66885 899999999999999999988766654
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.05 Score=48.13 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=82.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.++++|.+-|-+|.++-+.++-+...+++.+ .+ ++.|=+ | .-+++++|++.. +.|+|
T Consensus 115 ~lieaGvd~I~idta~G~~~~~~~~I~~ik~---~~p~v~Vi~--G----------------~v~t~e~A~~a~-~aGAD 172 (366)
T 4fo4_A 115 ALVEAGVDVLLIDSSHGHSEGVLQRIRETRA---AYPHLEIIG--G----------------NVATAEGARALI-EAGVS 172 (366)
T ss_dssp HHHHTTCSEEEEECSCTTSHHHHHHHHHHHH---HCTTCEEEE--E----------------EECSHHHHHHHH-HHTCS
T ss_pred HHHhCCCCEEEEeCCCCCCHHHHHHHHHHHH---hcCCCceEe--e----------------eeCCHHHHHHHH-HcCCC
Confidence 4788999999999988765544433333322 22 444322 1 136889998855 77999
Q ss_pred EEEEecC--cCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIG--NVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiG--t~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+|-+.+| +.++. ...+...-+++.|.++.+..+..++|++-=||-..+ +++.+++.+|..=|-++|.+.
T Consensus 173 ~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~-~di~kala~GAd~V~vGs~f~ 244 (366)
T 4fo4_A 173 AVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFS-GDISKAIAAGASCVMVGSMFA 244 (366)
T ss_dssp EEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSH-HHHHHHHHTTCSEEEESTTTT
T ss_pred EEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCH-HHHHHHHHcCCCEEEEChHhh
Confidence 9998432 22211 000011125777888887654457999999966555 559999999999999999874
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.037 Score=45.30 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=59.3
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.+..+.+++.|+|+|-+.--+.-+.+ ...+++.+++|++.+ ++|+..=||-..+ +++.++.+.|+..|-+
T Consensus 36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~----~~~~~~~i~~i~~~~---~ipvi~~Ggi~~~-~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRGAGEILLTSIDRDGTK----SGYDTEMIRFVRPLT---TLPIIASGGAGKM-EHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTCS----SCCCHHHHHHHGGGC---CSCEEEESCCCSH-HHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcCCCEEEEEecCcccCC----CcccHHHHHHHHHhC---CCCEEEeCCCCCH-HHHHHHHHcCCCeeeh
Confidence 5666666667899999987644433322 234789999999887 6999999987755 5699999999999999
Q ss_pred chHHH
Q 029540 146 NTEVR 150 (192)
Q Consensus 146 ~T~l~ 150 (192)
+|.+.
T Consensus 108 g~~~l 112 (247)
T 3tdn_A 108 NTAAV 112 (247)
T ss_dssp SHHHH
T ss_pred hhHHh
Confidence 99864
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.42 Score=37.50 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=93.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEe--------cc----ccccCCCCCccc-----c--ccc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAE--------LG----RLSGTEDGLTVE-----D--YEA 62 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaE--------lG----~i~g~e~~~~~~-----~--~~~ 62 (192)
.++++|.+.|-++-...+.++-.+..+++.++++.+++.|-.. .| +++......... . ..-
T Consensus 34 ~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v~l~~~~~~~~~~~~~~~~~~~~v 113 (215)
T 1xi3_A 34 EALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLGPEDMPIEVAKEIAPNLIIGA 113 (215)
T ss_dssp HHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEECTTSCCHHHHHHHCTTSEEEE
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEcChHHHHHHcCCCEEEECCccCCHHHHHHhCCCCEEEE
Confidence 4678999999998777788777777788888888877755432 11 122111100000 0 001
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCC-CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVH-GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~H-G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
..++|+++.+. .+.|+|.+-+. ++. +.-+++.+..+++.++++++.+ ++|++.=| |+..++++++.+.|+.
T Consensus 114 ~~~t~~e~~~~-~~~g~d~i~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~G--GI~~~nv~~~~~~Ga~ 185 (215)
T 1xi3_A 114 SVYSLEEALEA-EKKGADYLGAG--SVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIG--GINKDNAREVLKTGVD 185 (215)
T ss_dssp EESSHHHHHHH-HHHTCSEEEEE--CSSCC----CCCCCHHHHHHHHHHHC---SSCEEEES--SCCTTTHHHHHTTTCS
T ss_pred ecCCHHHHHHH-HhcCCCEEEEc--CCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEEC--CcCHHHHHHHHHcCCC
Confidence 13688888764 56799998764 111 0001112457899999998876 69999977 5557889999999999
Q ss_pred EeecchHHH
Q 029540 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
-|=++|.+.
T Consensus 186 gv~vgs~i~ 194 (215)
T 1xi3_A 186 GIAVISAVM 194 (215)
T ss_dssp EEEESHHHH
T ss_pred EEEEhHHHh
Confidence 999999885
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.043 Score=44.62 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=80.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+.|++....++- .....++.+... ...+++..-.|.|.- .+ +. +..- ++.+..+-+++.|+|
T Consensus 92 ~~l~~Gad~V~lg~~~l~~---p~~~~~~~~~~g~~~~~~l~~~~g~v~~-~g----~~-~~~~-~~~e~~~~~~~~G~~ 161 (244)
T 1vzw_A 92 AALATGCTRVNLGTAALET---PEWVAKVIAEHGDKIAVGLDVRGTTLRG-RG----WT-RDGG-DLYETLDRLNKEGCA 161 (244)
T ss_dssp HHHHTTCSEEEECHHHHHC---HHHHHHHHHHHGGGEEEEEEEETTEECC-SS----SC-CCCC-BHHHHHHHHHHTTCC
T ss_pred HHHHcCCCEEEECchHhhC---HHHHHHHHHHcCCcEEEEEEccCCEEEE-cC----cc-cCCC-CHHHHHHHHHhCCCC
Confidence 4788999999998765542 223333333322 223455554444421 11 11 1111 555654556678999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc---CCeEeecchHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER---GVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~---Gi~KINi~T~l~ 150 (192)
.+-+.-.+--|.+ ...|++.+++|++.+ ++|++-=||-..+ ++++++.+. |+.=+=++|.+.
T Consensus 162 ~i~~~~~~~~~~~----~g~~~~~~~~i~~~~---~ipvia~GGI~~~-~d~~~~~~~~~~Gadgv~vG~al~ 226 (244)
T 1vzw_A 162 RYVVTDIAKDGTL----QGPNLELLKNVCAAT---DRPVVASGGVSSL-DDLRAIAGLVPAGVEGAIVGKALY 226 (244)
T ss_dssp CEEEEEC-----------CCCHHHHHHHHHTC---SSCEEEESCCCSH-HHHHHHHTTGGGTEEEEEECHHHH
T ss_pred EEEEeccCccccc----CCCCHHHHHHHHHhc---CCCEEEECCCCCH-HHHHHHHhhccCCCceeeeeHHHH
Confidence 8877533322322 235999999999887 6999988744433 779999998 999999999885
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.19 Score=44.24 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|+.. .+.|+|.+.|+-..-|..+. ..-.++.|.+|++.+.. ++|++.=||--.+.+ +.+++.+|..=|-
T Consensus 238 ~~~e~a~~a-~~~Gad~I~vs~~ggr~~~~---g~~~~~~l~~v~~~v~~-~ipVia~GGI~~g~D-~~kalalGAd~V~ 311 (368)
T 2nli_A 238 QHPEDADMA-IKRGASGIWVSNHGARQLYE---APGSFDTLPAIAERVNK-RVPIVFDSGVRRGEH-VAKALASGADVVA 311 (368)
T ss_dssp CSHHHHHHH-HHTTCSEEEECCGGGTSCSS---CCCHHHHHHHHHHHHTT-SSCEEECSSCCSHHH-HHHHHHTTCSEEE
T ss_pred CCHHHHHHH-HHcCCCEEEEcCCCcCCCCC---CCChHHHHHHHHHHhCC-CCeEEEECCCCCHHH-HHHHHHcCCCEEE
Confidence 678888874 58899999986422222222 22367889999988742 499999998876655 8888899999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+..+....= ..-.....+.+++.++..|.+.|..
T Consensus 312 iGr~~l~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~ 349 (368)
T 2nli_A 312 LGRPVLFGLALGG-------WQGAYSVLDYFQKDLTRVMQLTGSQ 349 (368)
T ss_dssp ECHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ECHHHHHHHHhcC-------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999876643210 1123445677788888888888864
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.16 Score=45.12 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=79.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|+.. .+.|+|.+.|+- ||........-.++.|.++++.++. ++|+..=||--.+.| +.+++.+|..=|.
T Consensus 261 ~~~e~A~~a-~~aGad~I~vs~---~ggr~~~~g~~~~~~l~~v~~av~~-~ipVia~GGI~~g~D-v~kalalGAd~V~ 334 (392)
T 2nzl_A 261 LRGDDAREA-VKHGLNGILVSN---HGARQLDGVPATIDVLPEIVEAVEG-KVEVFLDGGVRKGTD-VLKALALGAKAVF 334 (392)
T ss_dssp CCHHHHHHH-HHTTCCEEEECC---GGGTSSTTCCCHHHHHHHHHHHHTT-SSEEEECSSCCSHHH-HHHHHHTTCSEEE
T ss_pred CCHHHHHHH-HHcCCCEEEeCC---CCCCcCCCCcChHHHHHHHHHHcCC-CCEEEEECCCCCHHH-HHHHHHhCCCeeE
Confidence 578888874 578999999863 5532111123467889999888742 499999998776655 8888899999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+..+....- ..-.....+.+++.++..|.+.|..
T Consensus 335 iGr~~l~~~~~~g-------~~gv~~~l~~l~~el~~~m~~~G~~ 372 (392)
T 2nzl_A 335 VGRPIVWGLAFQG-------EKGVQDVLEILKEEFRLAMALSGCQ 372 (392)
T ss_dssp ECHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ECHHHHHHHHhcC-------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999877643210 1123345677888888888888864
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.094 Score=46.97 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=80.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.++++|-+-|-+|.++-.-+.. .++++..++ +++.|=+ | ..+++++|+.. .+.|+|
T Consensus 151 ~lveaGvdvIvldta~G~~~~~----~e~I~~ik~~~~i~Vi~--g----------------~V~t~e~A~~a-~~aGAD 207 (400)
T 3ffs_A 151 LLVEAGVDVIVLDSAHGHSLNI----IRTLKEIKSKMNIDVIV--G----------------NVVTEEATKEL-IENGAD 207 (400)
T ss_dssp HHHHHTCSEEEECCSCCSBHHH----HHHHHHHHTTCCCEEEE--E----------------EECSHHHHHHH-HHTTCS
T ss_pred HHHHcCCCEEEEeCCCCCcccH----HHHHHHHHhcCCCeEEE--e----------------ecCCHHHHHHH-HHcCCC
Confidence 4678999999999887522221 233333333 3665532 1 12678888884 578999
Q ss_pred EEEEecCcC--CCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIGNV--HGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~--HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++-+.+|-- |+.- ..+...-+++.|.++.+..+..++|++-=||-.. .+++.+++.+|..=|-++|.|.
T Consensus 208 ~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~-~~di~kalalGAd~V~vGt~f~ 279 (400)
T 3ffs_A 208 GIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRY-SGDIGKALAVGASSVMIGSILA 279 (400)
T ss_dssp EEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCS-HHHHHHHHTTTCSEEEECGGGT
T ss_pred EEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCC-HHHHHHHHHcCCCEEEEChHHh
Confidence 999854322 2110 0000112578888888776545799999996554 4669999999999999999884
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.087 Score=46.56 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=83.8
Q ss_pred hhhhcCCCEeE-eeCCCC--------CHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHH
Q 029540 2 EAIVLGFDSLM-VDGSHL--------PFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQA 70 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l--------~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea 70 (192)
+|+++|.+.|- |++++- +.+|+++..++.+++|+++| +.|+.-+ +|. ..++|+.+
T Consensus 82 ~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~------ed~--------~~~~~~~~ 147 (382)
T 2ztj_A 82 VAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSA------EDT--------FRSEEQDL 147 (382)
T ss_dssp HHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEE------TTT--------TTSCHHHH
T ss_pred HHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEE------EeC--------CCCCHHHH
Confidence 57788887654 454432 68999999999999999999 6665332 221 35788877
Q ss_pred HHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 71 EEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 71 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++ +. +|.+.++ -.=|.- .|.-=.++++.|++.++ .++||-+|+ ..|+.-...-.|++.|+.-|+
T Consensus 148 ~~~~~~~~~~-a~~i~l~--DT~G~~---~P~~~~~lv~~l~~~~~-~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd 219 (382)
T 2ztj_A 148 LAVYEAVAPY-VDRVGLA--DTVGVA---TPRQVYALVREVRRVVG-PRVDIEFHGHNDTGCAIANAYEAIEAGATHVD 219 (382)
T ss_dssp HHHHHHHGGG-CSEEEEE--ETTSCC---CHHHHHHHHHHHHHHHT-TTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHh-cCEEEec--CCCCCC---CHHHHHHHHHHHHHhcC-CCCeEEEEeCCCccHHHHHHHHHHHhCCCEEE
Confidence 76654 45 7876653 222321 25444677788887631 157887775 789999999999999999885
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.019 Score=49.91 Aligned_cols=136 Identities=19% Similarity=0.097 Sum_probs=94.9
Q ss_pred hhhhc----CCCEeEe-eCCC---------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH
Q 029540 2 EAIVL----GFDSLMV-DGSH---------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~----GFtSVM~-D~S~---------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
+|+++ |.+-|-+ ++.+ .+.+|+++..++++++|++.|..|+ . +.++. ..++|
T Consensus 85 ~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~--f----~~~d~--------~~~~~ 150 (325)
T 3eeg_A 85 IAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE--F----FCEDA--------GRADQ 150 (325)
T ss_dssp HHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE--E----EEETG--------GGSCH
T ss_pred HHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE--E----Ecccc--------ccchH
Confidence 35556 7766643 3322 2457888888999999999998874 2 22221 35889
Q ss_pred HHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCe
Q 029540 68 NQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVR 141 (192)
Q Consensus 68 eea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~ 141 (192)
+.+.++++ +.|+|.+. +.-.=|.- .|.-=.++++.+++.+... ++||-+|+ ..|+.-...-.|++.|+.
T Consensus 151 ~~~~~~~~~~~~~G~~~i~--l~DT~G~~---~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~ 225 (325)
T 3eeg_A 151 AFLARMVEAVIEAGADVVN--IPDTTGYM---LPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGAR 225 (325)
T ss_dssp HHHHHHHHHHHHHTCSEEE--CCBSSSCC---CHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCEEE--ecCccCCc---CHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 88877765 46999754 55554543 2544456777787776310 18888887 889999999999999999
Q ss_pred Ee------------ecchHHHHHHHHH
Q 029540 142 KF------------NVNTEVRKAYMDS 156 (192)
Q Consensus 142 KI------------Ni~T~l~~a~~~~ 156 (192)
-| |..|+-...+.+.
T Consensus 226 ~vd~tv~GlGer~GN~~lE~vv~~L~~ 252 (325)
T 3eeg_A 226 QVECTINGIGERAGNTALEEVVMAMEC 252 (325)
T ss_dssp EEEEBGGGCCSTTCCCBHHHHHHHHHH
T ss_pred EEEEecccccccccchhHHHHHHHHHh
Confidence 98 7888877777664
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.056 Score=47.83 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=90.4
Q ss_pred cCCCEeE-eeCCC---------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh
Q 029540 6 LGFDSLM-VDGSH---------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 6 ~GFtSVM-~D~S~---------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
+|...|- |++++ .+.+|+++..++++++|+.+|..|+ . +.|| ...++|+.+.++++
T Consensus 99 ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~--~----~~ed--------~~r~~~~~~~~~~~ 164 (370)
T 3rmj_A 99 APKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVE--F----SCED--------ALRSEIDFLAEICG 164 (370)
T ss_dssp SSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEE--E----EEET--------GGGSCHHHHHHHHH
T ss_pred CCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE--E----ecCC--------CCccCHHHHHHHHH
Confidence 6776663 44332 3679999999999999999998764 1 1222 13588988877765
Q ss_pred ---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEe------
Q 029540 76 ---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKF------ 143 (192)
Q Consensus 76 ---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------ 143 (192)
+.|+|.+.++ -.=|.- .|.-=.++++.+++.+... ++||-+|. ..|+.-...-.|++.|+.-|
T Consensus 165 ~~~~~Ga~~i~l~--DT~G~~---~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~G 239 (370)
T 3rmj_A 165 AVIEAGATTINIP--DTVGYS---IPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNG 239 (370)
T ss_dssp HHHHHTCCEEEEE--CSSSCC---CHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGG
T ss_pred HHHHcCCCEEEec--CccCCc---CHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 5799987654 333322 2544456777787776310 17888777 88999999999999999998
Q ss_pred ------ecchHHHHHHHH
Q 029540 144 ------NVNTEVRKAYMD 155 (192)
Q Consensus 144 ------Ni~T~l~~a~~~ 155 (192)
|..|+-...+..
T Consensus 240 lGeraGN~~lE~vv~~L~ 257 (370)
T 3rmj_A 240 LGERAGNASVEEIVMALK 257 (370)
T ss_dssp CSSTTCBCBHHHHHHHHH
T ss_pred cCcccccccHHHHHHHHH
Confidence 667776554443
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.47 Score=38.40 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=74.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc-
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID- 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD- 80 (192)
.|+++|.+.|.+. .+|.+ + .+++.++++++|..+=- +. +..|..+.++.+.+. +|
T Consensus 103 ~~~~~Gad~v~~~--~~~~~-~---~~~~~~~~~~~g~~~~~------~i----------~~~t~~e~~~~~~~~--~d~ 158 (248)
T 1geq_A 103 EAKASGVDGILVV--DLPVF-H---AKEFTEIAREEGIKTVF------LA----------APNTPDERLKVIDDM--TTG 158 (248)
T ss_dssp HHHHHTCCEEEET--TCCGG-G---HHHHHHHHHHHTCEEEE------EE----------CTTCCHHHHHHHHHH--CSS
T ss_pred HHHHCCCCEEEEC--CCChh-h---HHHHHHHHHHhCCCeEE------EE----------CCCCHHHHHHHHHhc--CCC
Confidence 4778999999994 45553 3 45778888887753321 10 012334444444433 45
Q ss_pred EEEEecCcCCCCCCCC--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCH-HHHHHHHhcCCeEeecchHHHHHH
Q 029540 81 ALAVCIGNVHGKYPSS--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA-ELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~-e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
++-+ ++.-|..... .+...++.++++++.+ ++|++.=| |+.. ++++++.+.|+.-+-++|.+..+.
T Consensus 159 ~i~~--~~~~G~~g~~~~~~~~~~~~i~~l~~~~---~~pi~~~G--GI~~~e~i~~~~~~Gad~vivGsai~~~~ 227 (248)
T 1geq_A 159 FVYL--VSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVGF--GVSKREHVVSLLKEGANGVVVGSALVKII 227 (248)
T ss_dssp EEEE--ECCC-------CCCHHHHHHHHHHHHHC---SSCEEEES--CCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred eEEE--EECCccCCCCCCCChhHHHHHHHHHhhc---CCCEEEEe--ecCCHHHHHHHHHcCCCEEEEcHHHHhhH
Confidence 4433 2223322110 1223466788888776 69988766 6666 889999999999999999997764
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.21 Score=41.26 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=76.3
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|.++|.+.|.+ ..+|++ ..+++++.++++|+.+ ..+. +.-|+++..+...+. +.+++
T Consensus 114 a~~aGadgv~v--~d~~~~----~~~~~~~~~~~~g~~~----i~~~------------a~~t~~e~~~~~~~~-~~g~v 170 (262)
T 1rd5_A 114 MKEAGVHGLIV--PDLPYV----AAHSLWSEAKNNNLEL----VLLT------------TPAIPEDRMKEITKA-SEGFV 170 (262)
T ss_dssp HHHTTCCEEEC--TTCBTT----THHHHHHHHHHTTCEE----CEEE------------CTTSCHHHHHHHHHH-CCSCE
T ss_pred HHHcCCCEEEE--cCCChh----hHHHHHHHHHHcCCce----EEEE------------CCCCCHHHHHHHHhc-CCCeE
Confidence 77889987776 355554 3667888888887542 1111 122555555555443 33444
Q ss_pred EEecCcCCCCCCCC---CCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHH
Q 029540 83 AVCIGNVHGKYPSS---GPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 83 AvaiGt~HG~y~~~---~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
-+ +++-| |.+. .+...++.++++++.+ ++|++. +.|+. .++++++.+.|..=+-++|.+..+.
T Consensus 171 ~~--~s~~G-~tG~~~~~~~~~~~~i~~v~~~~---~~pI~v--gGGI~~~e~~~~~~~~GAdgvvVGSai~~~~ 237 (262)
T 1rd5_A 171 YL--VSVNG-VTGPRANVNPRVESLIQEVKKVT---NKPVAV--GFGISKPEHVKQIAQWGADGVIIGSAMVRQL 237 (262)
T ss_dssp EE--ECSSC-CBCTTSCBCTHHHHHHHHHHHHC---SSCEEE--ESCCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred EE--ecCCC-CCCCCcCCCchHHHHHHHHHhhc---CCeEEE--ECCcCCHHHHHHHHHcCCCEEEEChHHHhHH
Confidence 22 22212 2211 1222345778888776 699987 56888 8999999999999999999997665
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.13 Score=46.98 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=83.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+.+++|++-|-+|.++-..+..+...+++.+... ++.|=+ | ..+++++|+..+ +.|+|+
T Consensus 238 ~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p--~~~Vi~--g----------------~v~t~e~a~~l~-~aGaD~ 296 (496)
T 4fxs_A 238 ALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIG--G----------------NVATAEGARALI-EAGVSA 296 (496)
T ss_dssp HHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCCEEE--E----------------EECSHHHHHHHH-HHTCSE
T ss_pred HHHhccCceEEeccccccchHHHHHHHHHHHHCC--CceEEE--c----------------ccCcHHHHHHHH-HhCCCE
Confidence 4678999999999998544444433344333221 344333 1 136778887754 789999
Q ss_pred EEEecCcC--CCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNV--HGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~--HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|++|-- |+.-. .+...-++..+.++.+.++..++|++-=||-..| +++.+++..|..=+-++|.+.
T Consensus 297 I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~-~di~kala~GAd~V~iGs~f~ 367 (496)
T 4fxs_A 297 VKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFS-GDISKAIAAGASCVMVGSMFA 367 (496)
T ss_dssp EEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSH-HHHHHHHHTTCSEEEESTTTT
T ss_pred EEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCH-HHHHHHHHcCCCeEEecHHHh
Confidence 99876532 11100 0011236788888888765557999999987765 559999999999999998873
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.27 Score=43.03 Aligned_cols=112 Identities=12% Similarity=0.061 Sum_probs=77.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|+.. .+.|+|.+-|+- ||........-+++.|.++++.+.. ++|++.=||-..+ +++.+++.+|..=+.
T Consensus 234 ~~~e~a~~a-~~~Gad~I~vs~---~ggr~~~~~~~~~~~l~~v~~~~~~-~ipvia~GGI~~~-~D~~k~l~~GAdaV~ 307 (370)
T 1gox_A 234 ITAEDARLA-VQHGAAGIIVSN---HGARQLDYVPATIMALEEVVKAAQG-RIPVFLDGGVRRG-TDVFKALALGAAGVF 307 (370)
T ss_dssp CSHHHHHHH-HHTTCSEEEECC---GGGTSSTTCCCHHHHHHHHHHHTTT-SSCEEEESSCCSH-HHHHHHHHHTCSEEE
T ss_pred CCHHHHHHH-HHcCCCEEEECC---CCCccCCCcccHHHHHHHHHHHhCC-CCEEEEECCCCCH-HHHHHHHHcCCCEEe
Confidence 568888775 477999998852 5432111233478889999887732 4999988876654 468899999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+..+.... . ..-.....+.+.+.++..|...|..
T Consensus 308 iGr~~l~~~~~~------G-~~gv~~~~~~l~~el~~~m~~~G~~ 345 (370)
T 1gox_A 308 IGRPVVFSLAAE------G-EAGVKKVLQMMRDEFELTMALSGCR 345 (370)
T ss_dssp ECHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecHHHHHHHhhc------c-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654211 0 1123345577778888888888864
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.46 Score=39.66 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=79.2
Q ss_pred cCCCEeEeeCCC-------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029540 6 LGFDSLMVDGSH-------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 6 ~GFtSVM~D~S~-------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+||+-|-+.-|. ..|-.+.+...++++..++. +++|=.=+. ...+++.+..+-+++.
T Consensus 124 ~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~---------------~~~~~~~~~a~~l~~~ 188 (311)
T 1ep3_A 124 ANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLS---------------PNVTDIVPIAKAVEAA 188 (311)
T ss_dssp TTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEEC---------------SCSSCSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEEC---------------CChHHHHHHHHHHHHc
Confidence 788877776552 22334556667777776654 555521111 0135666755567789
Q ss_pred CCcEEEEecCc----CCCC------------CCCCCCC---CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 78 DIDALAVCIGN----VHGK------------YPSSGPN---LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 78 gvD~LAvaiGt----~HG~------------y~~~~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
|+|.|-++-+. .|+. |.+ +. +.++.+++|++.+ ++|++.=||-. +.+++.++++.
T Consensus 189 G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g--~~~~~~~~~~i~~i~~~~---~ipvia~GGI~-~~~d~~~~l~~ 262 (311)
T 1ep3_A 189 GADGLTMINTLMGVRFDLKTRQPILANITGGLSG--PAIKPVALKLIHQVAQDV---DIPIIGMGGVA-NAQDVLEMYMA 262 (311)
T ss_dssp TCSEEEECCCEEECCBCTTTCSBSSTTSCEEEES--GGGHHHHHHHHHHHHTTC---SSCEEECSSCC-SHHHHHHHHHH
T ss_pred CCCEEEEeCCCcccccCcccCCccccCCCCcccC--ccchHHHHHHHHHHHHhc---CCCEEEECCcC-CHHHHHHHHHc
Confidence 99999985311 1321 221 21 1257778888776 69999777443 46789999999
Q ss_pred CCeEeecchHHHH
Q 029540 139 GVRKFNVNTEVRK 151 (192)
Q Consensus 139 Gi~KINi~T~l~~ 151 (192)
|..-|-++|.+..
T Consensus 263 GAd~V~vg~~~l~ 275 (311)
T 1ep3_A 263 GASAVAVGTANFA 275 (311)
T ss_dssp TCSEEEECTHHHH
T ss_pred CCCEEEECHHHHc
Confidence 9999999999853
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.31 Score=38.96 Aligned_cols=141 Identities=12% Similarity=0.119 Sum_probs=89.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEec------c----ccccCCCCCcc------c-ccccc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAEL------G----RLSGTEDGLTV------E-DYEAK 63 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaEl------G----~i~g~e~~~~~------~-~~~~~ 63 (192)
+++++|.+.|-+|--.+++++..+..+++.+.+..+ .+.|...+ | ++++....... . .....
T Consensus 37 ~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v~~~~~~a~~~gad~v~l~~~~~~~~~~~~~~~~~~ig~s 116 (221)
T 1yad_A 37 ITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVMNGRVDIALFSTIHRVQLPSGSFSPKQIRARFPHLHIGRS 116 (221)
T ss_dssp HHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHTTTCCEEEECTTSCCHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCCeEEEeChHHHHHHcCCCEEEeCCCccCHHHHHHHCCCCEEEEE
Confidence 467889999999988889998888888887654322 23344111 1 12211110000 0 00112
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..+++++++.. +.|+|++.+ |++.+. .+++.+.++++.++++++.+ ++|++.=||- ..++++++++.|..=
T Consensus 117 v~t~~~~~~a~-~~gaD~i~~--~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI--~~~nv~~~~~~Ga~g 188 (221)
T 1yad_A 117 VHSLEEAVQAE-KEDADYVLF--GHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM--TPDRLRDVKQAGADG 188 (221)
T ss_dssp ECSHHHHHHHH-HTTCSEEEE--ECCC----------CHHHHHHHHHHHC---CSCEEEESSC--CGGGHHHHHHTTCSE
T ss_pred cCCHHHHHHHH-hCCCCEEEE--CCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC--CHHHHHHHHHcCCCE
Confidence 36899987754 689998866 444221 11112457889999998776 6999998855 788999999999999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
|=++|.+.
T Consensus 189 v~vgs~i~ 196 (221)
T 1yad_A 189 IAVMSGIF 196 (221)
T ss_dssp EEESHHHH
T ss_pred EEEhHHhh
Confidence 99999885
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.54 Score=39.30 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=82.9
Q ss_pred hhhhcCCCEeEe-e--CCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH---HHhh
Q 029540 2 EAIVLGFDSLMV-D--GSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE---EFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~-D--~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~---~Fv~ 75 (192)
+|++.|.+-|-+ . + ..+.++-++..+++++.||.+|+.|=.| -...|.. .. ..+ ++++.. +-..
T Consensus 100 ~Ai~~Ga~~v~~~~nig-~~~~~~~~~~~~~v~~~~~~~~~~vIi~-~~~~G~~--~~-----~~~-s~~~i~~a~~~a~ 169 (263)
T 1w8s_A 100 EAVSLGASAVGYTIYPG-SGFEWKMFEELARIKRDAVKFDLPLVVE-SFPRGGK--VV-----NET-APEIVAYAARIAL 169 (263)
T ss_dssp HHHHTTCSEEEEEECTT-STTHHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTT--CC-----CTT-CHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEEecC-CcCHHHHHHHHHHHHHHHHHcCCeEEEE-eeCCCCc--cc-----cCC-CHHHHHHHHHHHH
Confidence 689999988733 3 4 4678999999999999999999876444 1222221 10 112 455443 3456
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCc-cEEeecCCCC-CHHHHHHH----HhcCCeEeecchHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGV-LLVLHGASGL-SAELIKGC----IERGVRKFNVNTEV 149 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~i-PLVlHGgSG~-~~e~~~~~----i~~Gi~KINi~T~l 149 (192)
+.|+|++-+++ +. +++.++++.+.+ ++ |++.=||... +.+++.+. ++.|..=+=++..+
T Consensus 170 ~~GAD~vkt~~-------~~-----~~e~~~~~~~~~---~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI 234 (263)
T 1w8s_A 170 ELGADAMKIKY-------TG-----DPKTFSWAVKVA---GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNV 234 (263)
T ss_dssp HHTCSEEEEEC-------CS-----SHHHHHHHHHHT---TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred HcCCCEEEEcC-------CC-----CHHHHHHHHHhC---CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhh
Confidence 78999998883 21 578889888877 45 9999998875 45555544 48998744444443
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.21 Score=43.98 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=78.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|+... +.|+|.+.|+ -||.-......-+++.|.++++.+ ++|+..=||-..+ +++.+++.+|..=+-
T Consensus 234 ~t~e~a~~a~-~aGad~I~vs---~~gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GGI~~~-~dv~kal~~GAdaV~ 305 (380)
T 1p4c_A 234 LSAEDADRCI-AEGADGVILS---NHGGRQLDCAISPMEVLAQSVAKT---GKPVLIDSGFRRG-SDIVKALALGAEAVL 305 (380)
T ss_dssp CCHHHHHHHH-HTTCSEEEEC---CGGGTSCTTCCCGGGTHHHHHHHH---CSCEEECSSCCSH-HHHHHHHHTTCSCEE
T ss_pred CcHHHHHHHH-HcCCCEEEEc---CCCCCcCCCCcCHHHHHHHHHHHc---CCeEEEECCCCCH-HHHHHHHHhCCcHhh
Confidence 5788888755 6899999884 254311111223788899999888 5799988876655 468899999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+....... . ..-+....+.+.+.++..|...|..
T Consensus 306 iGr~~l~~~~~~------g-~~~v~~~~~~l~~el~~~m~~~G~~ 343 (380)
T 1p4c_A 306 LGRATLYGLAAR------G-ETGVDEVLTLLKADIDRTLAQIGCP 343 (380)
T ss_dssp ESHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ehHHHHHHHHhc------C-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999997654211 0 1223455677888888889888864
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.029 Score=45.03 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++.+..+.+++.|+|+|-+.--+.++ + ....+++.+++|++.+ ++|+..||+-..+ ++++++.+.|+..|.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~-~---~~~~~~~~i~~i~~~~---~ipvi~~g~i~~~-~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP-E---GRATFIDSVKRVAEAV---SIPVLVGGGVRSL-EDATTLFRAGADKVS 104 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT-T---THHHHHHHHHHHHHHC---SSCEEEESSCCSH-HHHHHHHHHTCSEEE
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc-c---CCcccHHHHHHHHHhc---CCCEEEECCCCCH-HHHHHHHHcCCCEEE
Confidence 366666677788999999988655543 1 1224677888888877 6999999987654 568999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
+++.+.
T Consensus 105 i~~~~~ 110 (253)
T 1h5y_A 105 VNTAAV 110 (253)
T ss_dssp ESHHHH
T ss_pred EChHHh
Confidence 998764
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.1 Score=47.05 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=84.3
Q ss_pred hhhhcCCCEeEe--eCCC--------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMV--DGSH--------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~--D~S~--------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|-+ -.|. .+.++.++...+++++|+++|..|+..+ +| ..-++|+.+.
T Consensus 118 ~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~------ed--------a~r~d~~~~~ 183 (423)
T 3ivs_A 118 VAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSS------ED--------SFRSDLVDLL 183 (423)
T ss_dssp HHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEE------ES--------GGGSCHHHHH
T ss_pred HHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------cc--------CcCCCHHHHH
Confidence 578888876654 3442 2467778888999999999999887542 22 1347888777
Q ss_pred HHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 72 EFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+++ .+.|+|.+.++ -.=|.- .|.-=.++++.+++.. ++||-+|. ..|+.-...-.|++.|+.-|+.
T Consensus 184 ~v~~~~~~~Ga~~i~l~--DTvG~~---~P~~v~~lv~~l~~~~---~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ 254 (423)
T 3ivs_A 184 SLYKAVDKIGVNRVGIA--DTVGCA---TPRQVYDLIRTLRGVV---SCDIECHFHNDTGMAIANAYCALEAGATHIDT 254 (423)
T ss_dssp HHHHHHHHHCCSEEEEE--ETTSCC---CHHHHHHHHHHHHHHC---SSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhCCCccccC--CccCcC---CHHHHHHHHHHHHhhc---CCeEEEEECCCCchHHHHHHHHHHhCCCEEEE
Confidence 664 45799976543 333432 2544456677777766 58888877 8899999999999999998843
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.15 Score=43.41 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEE-e--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 64 LTDVNQAEEFIDETDIDALAV-C--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAv-a--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.-||..|++ +++-|+|++-+ . ||+- ..-.|+++|+.|.+.. ++|++.=||-+.|.+ ..++.++|.
T Consensus 143 ~dd~~~akr-l~~~G~~aVmPlg~pIGsG-------~Gi~~~~lI~~I~e~~---~vPVI~eGGI~TPsD-Aa~AmeLGA 210 (265)
T 1wv2_A 143 SDDPIIARQ-LAEIGCIAVMPLAGLIGSG-------LGICNPYNLRIILEEA---KVPVLVDAGVGTASD-AAIAMELGC 210 (265)
T ss_dssp CSCHHHHHH-HHHSCCSEEEECSSSTTCC-------CCCSCHHHHHHHHHHC---SSCBEEESCCCSHHH-HHHHHHHTC
T ss_pred CCCHHHHHH-HHHhCCCEEEeCCccCCCC-------CCcCCHHHHHHHHhcC---CCCEEEeCCCCCHHH-HHHHHHcCC
Confidence 357888888 55789999955 1 4551 2335899999999976 699999999887755 999999999
Q ss_pred eEeecchHHH
Q 029540 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.-|=++|.+.
T Consensus 211 dgVlVgSAI~ 220 (265)
T 1wv2_A 211 EAVLMNTAIA 220 (265)
T ss_dssp SEEEESHHHH
T ss_pred CEEEEChHHh
Confidence 9999999884
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.043 Score=45.07 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=78.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH--hCC--CeEEEe--cc--ccccCCCCCccccccccCCCHHHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH--SKG--MLVEAE--LG--RLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah--~~g--v~VEaE--lG--~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
+++++|.+.|++....+.-+.|....+++++.+. .-. +++..= =| .|-- .+. . +..-+++.+..+-
T Consensus 91 ~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~-~g~----~-~~~~~~~~e~~~~ 164 (266)
T 2w6r_A 91 EAFLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFT-HSG----K-KNTGILLRDWVVE 164 (266)
T ss_dssp HHHHHTCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEE-TTT----T-EEEEEEHHHHHHH
T ss_pred HHHHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEE-CCC----c-eecchhHHHHHHH
Confidence 4678899999997766622224444455444332 101 222220 01 1100 000 0 0011356665555
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+++.|++.+-+.--+.-|.+.+ .|+++++++++.+ ++|++.=||-+.+ ++++++.+.|+.=+=++|.+..
T Consensus 165 ~~~~G~~~i~~t~~~~~g~~~g----~~~~~i~~l~~~~---~ipvia~GGI~~~-ed~~~~~~~Gadgv~vgsal~~ 234 (266)
T 2w6r_A 165 VEKRGAGEILLTSIDRDGTKSG----YDTEMIRFVRPLT---TLPIIASGGAGKM-EHFLEAFLAGADAALAASVFHF 234 (266)
T ss_dssp HHHTTCSEEEEEETTTTTTCSC----CCHHHHHHHGGGC---CSCEEEESCCCSH-HHHHHHHHHTCSEEEESTTTC-
T ss_pred HHHcCCCEEEEEeecCCCCcCC----CCHHHHHHHHHHc---CCCEEEeCCCCCH-HHHHHHHHcCCHHHHccHHHHc
Confidence 6788999988754344455432 3899999999887 6999987765554 5788898999999999998753
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.16 Score=46.21 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=79.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++++|++-|-+|.++-..+. +.++++..++. ++.|=+ |. .+++++|+... +.|+
T Consensus 262 ~~~~aG~d~v~i~~~~G~~~~----~~~~i~~i~~~~~~~pvi~--~~----------------v~t~~~a~~l~-~aGa 318 (514)
T 1jcn_A 262 LLTQAGVDVIVLDSSQGNSVY----QIAMVHYIKQKYPHLQVIG--GN----------------VVTAAQAKNLI-DAGV 318 (514)
T ss_dssp HHHHTTCSEEEECCSCCCSHH----HHHHHHHHHHHCTTCEEEE--EE----------------ECSHHHHHHHH-HHTC
T ss_pred HHHHcCCCEEEeeccCCcchh----HHHHHHHHHHhCCCCceEe--cc----------------cchHHHHHHHH-HcCC
Confidence 578899999999999754332 33444444443 666643 11 25678888754 7899
Q ss_pred cEEEEecCc-CCCCC--C--CCCC-CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGN-VHGKY--P--SSGP-NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt-~HG~y--~--~~~p-~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++-|++|. .|-.. . .+.| ...+..+.++.+.+ ++|++.=||-..+ +++.+++.+|..=+-++|.+.
T Consensus 319 d~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~---~ipVia~GGI~~~-~di~kala~GAd~V~iG~~~l 391 (514)
T 1jcn_A 319 DGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF---GVPIIADGGIQTV-GHVVKALALGASTVMMGSLLA 391 (514)
T ss_dssp SEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG---TCCEEEESCCCSH-HHHHHHHHTTCSEEEESTTTT
T ss_pred CEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC---CCCEEEECCCCCH-HHHHHHHHcCCCeeeECHHHH
Confidence 999985521 11000 0 0011 23456666776665 6999999976654 569999999999999999773
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.11 Score=45.65 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=80.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.++++|.+-|-+|.++-..+..+...+++ ...+++.|=+ | .-+++++|+... +.|+|+
T Consensus 112 ~l~eaGad~I~ld~a~G~~~~~~~~i~~i---~~~~~~~Viv--g----------------~v~t~e~A~~l~-~aGaD~ 169 (361)
T 3khj_A 112 LLVEAGVDVIVLDSAHGHSLNIIRTLKEI---KSKMNIDVIV--G----------------NVVTEEATKELI-ENGADG 169 (361)
T ss_dssp HHHHTTCSEEEECCSCCSBHHHHHHHHHH---HHHCCCEEEE--E----------------EECSHHHHHHHH-HTTCSE
T ss_pred HHHHcCcCeEEEeCCCCCcHHHHHHHHHH---HHhcCCcEEE--c----------------cCCCHHHHHHHH-HcCcCE
Confidence 47889999999998875433333332222 2234655543 1 126788887754 789999
Q ss_pred EEEecCc--CCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGN--VHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt--~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|++|- .|+.- ..+...-+++.|.++.+..+..++|++-=||-.. .+++.+++.+|..=|-++|.+.
T Consensus 170 I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~-~~di~kala~GAd~V~vGs~~~ 240 (361)
T 3khj_A 170 IKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRY-SGDIGKALAVGASSVMIGSILA 240 (361)
T ss_dssp EEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCS-HHHHHHHHHHTCSEEEESTTTT
T ss_pred EEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 9985432 11110 0001112567788886654434799999886544 4679999999999999998874
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.087 Score=48.03 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=83.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+-|-+|.++-..+..+...+++.+ .+ ++.|=+ | ..+++++|+... +.|+|
T Consensus 236 ~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~---~~p~~~Vi~--g----------------~v~t~e~a~~l~-~aGaD 293 (490)
T 4avf_A 236 ALVAAGVDVVVVDTAHGHSKGVIERVRWVKQ---TFPDVQVIG--G----------------NIATAEAAKALA-EAGAD 293 (490)
T ss_dssp HHHHTTCSEEEEECSCCSBHHHHHHHHHHHH---HCTTSEEEE--E----------------EECSHHHHHHHH-HTTCS
T ss_pred HHhhcccceEEecccCCcchhHHHHHHHHHH---HCCCceEEE--e----------------eeCcHHHHHHHH-HcCCC
Confidence 4678899999999887644433333333332 22 444433 1 136778887754 68999
Q ss_pred EEEEecCc--CCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIGN--VHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt--~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++-|++|. .|+. ...+...-+++.|.++.+.++..++|++-=||-..+ +++.+++.+|..=+-++|.+.
T Consensus 294 ~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~-~di~kal~~GAd~V~vGs~~~ 365 (490)
T 4avf_A 294 AVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFS-GDLAKAMVAGAYCVMMGSMFA 365 (490)
T ss_dssp EEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSH-HHHHHHHHHTCSEEEECTTTT
T ss_pred EEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCH-HHHHHHHHcCCCeeeecHHHh
Confidence 99986543 1110 000011236788888888775557999999976655 569999999999999999873
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.29 Score=45.01 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc----CCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK----KGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~----~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.++++|+. +.+.|+|++.|+ | ||...-....-.++.|.++.+.+.. .++|+..=||--.+.+ +.+++.+|.
T Consensus 352 ~~~e~A~~-a~~aGad~I~vs--~-hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~D-v~kaLalGA 426 (511)
T 1kbi_A 352 QRTEDVIK-AAEIGVSGVVLS--N-HGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD-VLKALCLGA 426 (511)
T ss_dssp CSHHHHHH-HHHTTCSEEEEC--C-TTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH-HHHHHHHTC
T ss_pred CCHHHHHH-HHHcCCCEEEEc--C-CCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHH-HHHHHHcCC
Confidence 46888877 568899999884 3 7653211122357888899888731 2599999998876655 788888999
Q ss_pred eEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 141 RKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 141 ~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.=|.+++.+..+....= ..-.....+.+++.++..|.+.|..
T Consensus 427 daV~iGr~~l~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~ 468 (511)
T 1kbi_A 427 KGVGLGRPFLYANSCYG-------RNGVEKAIEILRDEIEMSMRLLGVT 468 (511)
T ss_dssp SEEEECHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEECHHHHHHHHhcC-------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999886653210 1123345677888888889988864
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.14 Score=45.36 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=74.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++++|++-|-+|.++-.. ++ ..++++..++. ++.|=+ | ...+|++|+.. .+.|+
T Consensus 107 ~a~~aGvdvI~id~a~G~~-~~---~~e~I~~ir~~~~~~~Vi~--G----------------~V~T~e~A~~a-~~aGa 163 (361)
T 3r2g_A 107 ALRDAGADFFCVDVAHAHA-KY---VGKTLKSLRQLLGSRCIMA--G----------------NVATYAGADYL-ASCGA 163 (361)
T ss_dssp HHHHTTCCEEEEECSCCSS-HH---HHHHHHHHHHHHTTCEEEE--E----------------EECSHHHHHHH-HHTTC
T ss_pred HHHHcCCCEEEEeCCCCCc-Hh---HHHHHHHHHHhcCCCeEEE--c----------------CcCCHHHHHHH-HHcCC
Confidence 5789999999999886422 22 23444455542 444432 1 12578888875 47899
Q ss_pred cEEEEecCcCCCCCC-------C-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNVHGKYP-------S-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~-------~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++-|++ ||.+. + +.| .++.|.++.+.. . |+..=||-.. .+++.+++.+|..=|-++|.+.
T Consensus 164 D~I~Vg~---g~G~~~~tr~~~g~g~p--~l~aI~~~~~~~---~-PVIAdGGI~~-~~di~kALa~GAd~V~iGr~f~ 232 (361)
T 3r2g_A 164 DIIKAGI---GGGSVCSTRIKTGFGVP--MLTCIQDCSRAD---R-SIVADGGIKT-SGDIVKALAFGADFVMIGGMLA 232 (361)
T ss_dssp SEEEECC---SSSSCHHHHHHHCCCCC--HHHHHHHHTTSS---S-EEEEESCCCS-HHHHHHHHHTTCSEEEESGGGT
T ss_pred CEEEEcC---CCCcCccccccCCccHH--HHHHHHHHHHhC---C-CEEEECCCCC-HHHHHHHHHcCCCEEEEChHHh
Confidence 9999854 44321 0 123 344444443332 2 9998886543 5669999999999999999874
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.086 Score=42.82 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=58.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++.+..+-+++.|++.+-+.--+.-|.+.+ .|+++++++++.+ ++|++-=||-+.+ ++++++.+.|+.=+=
T Consensus 152 ~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g----~~~~~i~~l~~~~---~ipvia~GGI~~~-~d~~~~~~~Gadgv~ 223 (252)
T 1ka9_F 152 LHAVEWAVKGVELGAGEILLTSMDRDGTKEG----YDLRLTRMVAEAV---GVPVIASGGAGRM-EHFLEAFQAGAEAAL 223 (252)
T ss_dssp EEHHHHHHHHHHHTCCEEEEEETTTTTTCSC----CCHHHHHHHHHHC---SSCEEEESCCCSH-HHHHHHHHTTCSEEE
T ss_pred CcHHHHHHHHHHcCCCEEEEecccCCCCcCC----CCHHHHHHHHHHc---CCCEEEeCCCCCH-HHHHHHHHCCCHHHH
Confidence 3444544446678999887753334455432 3899999999987 6999998866655 679999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
+++.+.
T Consensus 224 vgsal~ 229 (252)
T 1ka9_F 224 AASVFH 229 (252)
T ss_dssp ESHHHH
T ss_pred HHHHHH
Confidence 999885
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=95.24 E-value=0.67 Score=38.57 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=79.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|.+.|.+ ..+|+++ ..++++.++++|+.+ ..+.. .-|+++..++..+.. -++
T Consensus 117 ~~~~aGadgii~--~d~~~e~----~~~~~~~~~~~g~~~----i~l~~------------p~t~~~~i~~i~~~~-~g~ 173 (268)
T 1qop_A 117 RCEQVGVDSVLV--ADVPVEE----SAPFRQAALRHNIAP----IFICP------------PNADDDLLRQVASYG-RGY 173 (268)
T ss_dssp HHHHHTCCEEEE--TTCCGGG----CHHHHHHHHHTTCEE----ECEEC------------TTCCHHHHHHHHHHC-CSC
T ss_pred HHHHcCCCEEEE--cCCCHHH----HHHHHHHHHHcCCcE----EEEEC------------CCCCHHHHHHHHhhC-CCc
Confidence 467888886665 4556533 457788889888754 22210 115566666655543 233
Q ss_pred EEEecCcCCCCCCCC--CCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029540 82 LAVCIGNVHGKYPSS--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 82 LAvaiGt~HG~y~~~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
+- .+ +.-|..... .+.-.++.++++++.+ ++|+.. |.|+. .+++++++..|..=+=++|.+.....
T Consensus 174 v~-~~-s~~G~tG~~~~~~~~~~~~i~~lr~~~---~~pi~v--ggGI~t~e~~~~~~~agAD~vVVGSai~~~~~ 242 (268)
T 1qop_A 174 TY-LL-SRSGVTGAENRGALPLHHLIEKLKEYH---AAPALQ--GFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242 (268)
T ss_dssp EE-EE-SSSSCCCSSSCC--CCHHHHHHHHHTT---CCCEEE--ESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred EE-EE-ecCCcCCCccCCCchHHHHHHHHHhcc---CCcEEE--ECCCCCHHHHHHHHHcCCCEEEEChHHhhhHh
Confidence 21 11 333432211 1233478899999887 699888 66887 89999999999999999999977653
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.39 Score=45.40 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=88.3
Q ss_pred hhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccc
Q 029540 2 EAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVE 58 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~ 58 (192)
+|.++||+-|-+-+++ -++|...+...||++-.++. +..|-.=|.--...++
T Consensus 157 ~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~----- 231 (729)
T 1o94_A 157 RSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGP----- 231 (729)
T ss_dssp HHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCT-----
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCC-----
Confidence 6889999999998877 15788899999999988753 4444444432111000
Q ss_pred cccccCC---CHHHHHHHhhhhCCcEEEEecCc---CCCCCCC---CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH
Q 029540 59 DYEAKLT---DVNQAEEFIDETDIDALAVCIGN---VHGKYPS---SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA 129 (192)
Q Consensus 59 ~~~~~~T---~peea~~Fv~~TgvD~LAvaiGt---~HG~y~~---~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~ 129 (192)
.-+| +..+..+.+++ ++|+|-++.|+ .|+...+ ..+..+++..++|++.+ ++|++.=|+-- +.
T Consensus 232 ---~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~pvi~~G~i~-~~ 303 (729)
T 1o94_A 232 ---GQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS---KKPVLGVGRYT-DP 303 (729)
T ss_dssp ---TSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC---SSCEECCSCCC-CH
T ss_pred ---CCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC---CCEEEEeCCCC-CH
Confidence 0122 23333344555 79999999997 3322111 01334678888999887 69988777543 46
Q ss_pred HHHHHHHhcC-CeEeecchHH
Q 029540 130 ELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 130 e~~~~~i~~G-i~KINi~T~l 149 (192)
++..++++.| +.=|-+++.+
T Consensus 304 ~~a~~~l~~g~aD~V~~gR~~ 324 (729)
T 1o94_A 304 EKMIEIVTKGYADIIGCARPS 324 (729)
T ss_dssp HHHHHHHHTTSCSBEEESHHH
T ss_pred HHHHHHHHCCCCCEEEeCchh
Confidence 7788899888 7777777765
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.26 Score=47.21 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=99.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|+++|.+.|-+=.|.- |++..++.+++|++.|..|++-+-+.+..+|.. ...++|+...++++ +.|
T Consensus 205 ~a~~~Gvd~irIf~s~n----~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~------r~~~~~e~~~~~a~~l~~~G 274 (718)
T 3bg3_A 205 VAKENGMDVFRVFDSLN----YLPNMLLGMEAAGSAGGVVEAAISYTGDVADPS------RTKYSLQYYMGLAEELVRAG 274 (718)
T ss_dssp HHHHHTCCEEEEECSSC----CHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTT------CCTTCHHHHHHHHHHHHHHT
T ss_pred HHHhcCcCEEEEEecHH----HHHHHHHHHHHHHHcCCeEEEEEEeeccccCCC------CCCCCHHHHHHHHHHHHHcC
Confidence 57788888765544543 355667778889999999987776654333321 12357888777755 579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee------------
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN------------ 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN------------ 144 (192)
+|+|.+. -.=|.- .|.-=.++++.|++.+. ++||-+|+ .+|+.-...-.|++.|+.-|.
T Consensus 275 a~~I~l~--DT~G~~---~P~~v~~lV~~lk~~~p--~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGertGN 347 (718)
T 3bg3_A 275 THILCIK--DMAGLL---KPTACTMLVSSLRDRFP--DLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQ 347 (718)
T ss_dssp CSEEEEE--CTTSCC---CHHHHHHHHHHHHHHST--TCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSC
T ss_pred CCEEEEc--CcCCCc---CHHHHHHHHHHHHHhCC--CCeEEEEECCCccHHHHHHHHHHHhCCCEEEecCcccccccCc
Confidence 9988775 222222 25444667788887763 48888887 899999999999999999884
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHH
Q 029540 145 VNTEVRKAYMDSLS-RPKSDLIHLMA 169 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~ 169 (192)
..|+-..++++... ++..|+..+.+
T Consensus 348 ~~lE~vv~~L~~~g~~tgidl~~L~~ 373 (718)
T 3bg3_A 348 PSMGALVACTRGTPLDTEVPMERVFD 373 (718)
T ss_dssp CBHHHHHHHHTTSTTCCCCCHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcccCHHHHHH
Confidence 45555555554432 23345555543
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.064 Score=44.89 Aligned_cols=115 Identities=21% Similarity=0.156 Sum_probs=84.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|-+-|-+..+.++ ...+++++.||.+|+++=.|+ .+++|+.+ +.+.|.|.
T Consensus 123 ~a~~~GAD~VlL~~~~l~-----~~l~~l~~~a~~lGl~~lvev-------------------~~~~E~~~-a~~~gad~ 177 (254)
T 1vc4_A 123 EARAFGASAALLIVALLG-----ELTGAYLEEARRLGLEALVEV-------------------HTERELEI-ALEAGAEV 177 (254)
T ss_dssp HHHHTTCSEEEEEHHHHG-----GGHHHHHHHHHHHTCEEEEEE-------------------CSHHHHHH-HHHHTCSE
T ss_pred HHHHcCCCEEEECccchH-----HHHHHHHHHHHHCCCeEEEEE-------------------CCHHHHHH-HHHcCCCE
Confidence 478899999999999887 357899999999997765442 23456553 44667898
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC--CccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK--GVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~--~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+.-=+ |+ ....|++.++++.+.+... ++|+|- .||+. .++++++.+ |+.=+=|++.+.
T Consensus 178 IGvn~~~----l~--~~~~dl~~~~~L~~~i~~~~~~~~vIA--egGI~s~~dv~~l~~-Ga~gvlVGsAl~ 240 (254)
T 1vc4_A 178 LGINNRD----LA--TLHINLETAPRLGRLARKRGFGGVLVA--ESGYSRKEELKALEG-LFDAVLIGTSLM 240 (254)
T ss_dssp EEEESBC----TT--TCCBCTTHHHHHHHHHHHTTCCSEEEE--ESCCCSHHHHHTTTT-TCSEEEECHHHH
T ss_pred EEEcccc----Cc--CCCCCHHHHHHHHHhCccccCCCeEEE--EcCCCCHHHHHHHHc-CCCEEEEeHHHc
Confidence 8654322 33 2566888888888776311 367775 67887 899999999 999999999885
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.13 Score=44.45 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=59.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-CCCCCC--HHHHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPS-SGPNLK--LDLLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERGV 140 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~~p~ld--~~~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~Gi 140 (192)
.+|++..+.++..|+|++.+-++..+-.+.+ +.+.++ ++.+++|++.+ ++|+++=| +.+++.++.+++.+.|+
T Consensus 127 ~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~---~~Pv~vK~~~~~~~~~~a~~a~~~Ga 203 (349)
T 1p0k_A 127 ATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV---SVPVIVKEVGFGMSKASAGKLYEAGA 203 (349)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC---SSCEEEEEESSCCCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 4677888888899999999998876644332 135553 57788888777 69999988 78889999999999999
Q ss_pred eEeecc
Q 029540 141 RKFNVN 146 (192)
Q Consensus 141 ~KINi~ 146 (192)
.=|-+.
T Consensus 204 d~I~v~ 209 (349)
T 1p0k_A 204 AAVDIG 209 (349)
T ss_dssp SEEEEE
T ss_pred CEEEEc
Confidence 888874
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.29 Score=38.49 Aligned_cols=119 Identities=16% Similarity=0.048 Sum_probs=73.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|.+.|-+....- ++.+ +++.+.++++|..+ |.-- ...++|++..+-+++.|+|+
T Consensus 72 ~a~~~Gad~v~vh~~~~--~~~~---~~~~~~~~~~g~~~----gv~~------------~s~~~p~~~~~~~~~~g~d~ 130 (207)
T 3ajx_A 72 IAFKAGADLVTVLGSAD--DSTI---AGAVKAAQAHNKGV----VVDL------------IGIEDKATRAQEVRALGAKF 130 (207)
T ss_dssp HHHHTTCSEEEEETTSC--HHHH---HHHHHHHHHHTCEE----EEEC------------TTCSSHHHHHHHHHHTTCSE
T ss_pred HHHhCCCCEEEEeccCC--hHHH---HHHHHHHHHcCCce----EEEE------------ecCCChHHHHHHHHHhCCCE
Confidence 47788888887755433 2333 35667777767653 2200 02357777444455668999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+.-|...+ +.+ .+.+. ++|+++... ++|++.=||-. .+.++++++.|..=|-+++.+.
T Consensus 131 v~~~~~~~~~-~~g-~~~~~-~~i~~~~~~----~~pi~v~GGI~--~~~~~~~~~aGad~vvvGsaI~ 190 (207)
T 3ajx_A 131 VEMHAGLDEQ-AKP-GFDLN-GLLAAGEKA----RVPFSVAGGVK--VATIPAVQKAGAEVAVAGGAIY 190 (207)
T ss_dssp EEEECCHHHH-TST-TCCTH-HHHHHHHHH----TSCEEEESSCC--GGGHHHHHHTTCSEEEESHHHH
T ss_pred EEEEeccccc-ccC-CCchH-HHHHHhhCC----CCCEEEECCcC--HHHHHHHHHcCCCEEEEeeecc
Confidence 8544333221 222 12222 555555433 48999999655 6789999999999999999985
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.31 Score=38.60 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=71.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|.+-|.+... + .++++.++.+|..+= +| -.+|+++.+- .+.|+|.
T Consensus 75 ~a~~~Gad~V~~~~~--~--------~~~~~~~~~~g~~~~-----~g--------------~~t~~e~~~a-~~~G~d~ 124 (212)
T 2v82_A 75 ALARMGCQLIVTPNI--H--------SEVIRRAVGYGMTVC-----PG--------------CATATEAFTA-LEAGAQA 124 (212)
T ss_dssp HHHHTTCCEEECSSC--C--------HHHHHHHHHTTCEEE-----CE--------------ECSHHHHHHH-HHTTCSE
T ss_pred HHHHcCCCEEEeCCC--C--------HHHHHHHHHcCCCEE-----ee--------------cCCHHHHHHH-HHCCCCE
Confidence 356677776654331 1 245666777765431 11 1467888765 4689999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+ |+. +.+.++.++++++.++. ++|++-=||- ..++++++.+.|+.=|=++|.+.
T Consensus 125 v~v--------~~t--~~~g~~~~~~l~~~~~~-~ipvia~GGI--~~~~i~~~~~~Ga~gv~vGsai~ 180 (212)
T 2v82_A 125 LKI--------FPS--SAFGPQYIKALKAVLPS-DIAVFAVGGV--TPENLAQWIDAGCAGAGLGSDLY 180 (212)
T ss_dssp EEE--------TTH--HHHCHHHHHHHHTTSCT-TCEEEEESSC--CTTTHHHHHHHTCSEEEECTTTC
T ss_pred EEE--------ecC--CCCCHHHHHHHHHhccC-CCeEEEeCCC--CHHHHHHHHHcCCCEEEEChHHh
Confidence 885 321 23567888888876621 3899887755 57889999999999999999885
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.59 Score=38.87 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=77.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|++.+.+ ..+|++| ..++++.|+++|+.+ =.+.. .-|+++..++..+.. .++
T Consensus 117 ~~~~aG~dgvii--~dl~~ee----~~~~~~~~~~~gl~~----i~l~~------------p~t~~~rl~~ia~~a-~gf 173 (262)
T 2ekc_A 117 LSREKGIDGFIV--PDLPPEE----AEELKAVMKKYVLSF----VPLGA------------PTSTRKRIKLICEAA-DEM 173 (262)
T ss_dssp HHHHTTCCEEEC--TTCCHHH----HHHHHHHHHHTTCEE----CCEEC------------TTCCHHHHHHHHHHC-SSC
T ss_pred HHHHcCCCEEEE--CCCCHHH----HHHHHHHHHHcCCcE----EEEeC------------CCCCHHHHHHHHHhC-CCC
Confidence 477899998777 5678744 567888999999765 11110 115566666666554 233
Q ss_pred EEEecCcCCCCCCCCCC---CCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHH
Q 029540 82 LAVCIGNVHGKYPSSGP---NLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p---~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
+ ..+ +.-|..-...+ .-..++++++++.+ ++|+.. |.|+. .+++++ +..|..=+=++|.+....
T Consensus 174 i-y~v-s~~g~TG~~~~~~~~~~~~~v~~vr~~~---~~pv~v--G~GI~t~e~~~~-~~~gADgvIVGSai~~~~ 241 (262)
T 2ekc_A 174 T-YFV-SVTGTTGAREKLPYERIKKKVEEYRELC---DKPVVV--GFGVSKKEHARE-IGSFADGVVVGSALVKLA 241 (262)
T ss_dssp E-EEE-SSCC---------CHHHHHHHHHHHHHC---CSCEEE--ESSCCSHHHHHH-HHTTSSEEEECHHHHHHH
T ss_pred E-EEE-ecCCccCCCCCcCcccHHHHHHHHHhhc---CCCEEE--eCCCCCHHHHHH-HHcCCCEEEECHHHHhhh
Confidence 2 111 22332211111 11247788888877 699888 78997 899999 788999999999998775
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.072 Score=43.31 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+.+++.|+|+|-++=.+..|. ....+++.+++|++.+ ++|+.+.|+-.. .+++.++.+.|+..|-
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~----~~~~~~~~i~~i~~~~---~iPvi~~Ggi~~-~~~~~~~~~~Gad~V~ 102 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHE----ERAILLDVVARVAERV---FIPLTVGGGVRS-LEDARKLLLSGADKVS 102 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT----CHHHHHHHHHHHHTTC---CSCEEEESSCCS-HHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc----CccccHHHHHHHHHhC---CCCEEEECCcCC-HHHHHHHHHcCCCEEE
Confidence 4787877777899999998873333221 1234678888888776 699999997754 5789999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+++.+..
T Consensus 103 lg~~~l~ 109 (252)
T 1ka9_F 103 VNSAAVR 109 (252)
T ss_dssp ECHHHHH
T ss_pred EChHHHh
Confidence 9997753
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.14 Score=41.99 Aligned_cols=78 Identities=9% Similarity=0.118 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+.+++.|+|+|-++=-+.-|.+ ...+++.+++|++.+ ++|+.+-||-.. .+++.++.+.|+..+-
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~----~g~~~~~i~~i~~~~---~iPvi~~ggi~~-~~~i~~~~~~Gad~v~ 101 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGTK----SGYDTEMIRFVRPLT---TLPIIASGGAGK-MEHFLEAFLAGADKAL 101 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSCS----SCCCHHHHHHHGGGC---CSCEEEESCCCS-THHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccCC----CcccHHHHHHHHHhc---CCCEEEECCCCC-HHHHHHHHHcCCcHhh
Confidence 46777777778899999998533332322 224789999998876 699999888654 4669999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 102 lg~~~~ 107 (266)
T 2w6r_A 102 AASVFH 107 (266)
T ss_dssp CCCCC-
T ss_pred hhHHHH
Confidence 998765
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.25 Score=44.28 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=87.9
Q ss_pred ChhhhcCCCEeEeeCCC--------C------------CH-HHHHHHHHHHHHHHHhC-------CCeEEEeccccccCC
Q 029540 1 MEAIVLGFDSLMVDGSH--------L------------PF-KDNISHTKYISFLAHSK-------GMLVEAELGRLSGTE 52 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------l------------~~-eeNi~~Tk~vv~~Ah~~-------gv~VEaElG~i~g~e 52 (192)
++|+++||+-|-|-+.+ - ++ |.-.+...||++-.++. +..|-. ++...+
T Consensus 177 ~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~v---Ris~~~ 253 (419)
T 3l5a_A 177 LRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGF---RATPEE 253 (419)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEE---EECSCE
T ss_pred HHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEE---eccccc
Confidence 37899999999999886 1 23 77778888888877752 233333 222111
Q ss_pred CCCccccccccCCCHHHHHHH---hhh-hCCcEEEEecCcC----CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC
Q 029540 53 DGLTVEDYEAKLTDVNQAEEF---IDE-TDIDALAVCIGNV----HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 53 ~~~~~~~~~~~~T~peea~~F---v~~-TgvD~LAvaiGt~----HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
... .. .-+ ++++..+| +++ .|+|+|-|+-|+. ...... .+..+.+.++.|++.++. ++|++.=|+
T Consensus 254 -~~~-~~--~G~-~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~-g~~~~~~~a~~Ik~~v~~-~iPVI~~Gg 326 (419)
T 3l5a_A 254 -TRG-SD--LGY-TIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTP-GDHFGRPVNQIVYEHLAG-RIPLIASGG 326 (419)
T ss_dssp -EET-TE--EEE-CHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCS-STTTTSBHHHHHHHHHTT-SSCEEECSS
T ss_pred -ccC-CC--CCC-CHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCC-CccccHHHHHHHHHHcCC-CCeEEEECC
Confidence 000 00 011 24454444 455 8999999999875 211111 233566778999988731 389888775
Q ss_pred CCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 125 SGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 125 SG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-- +.++..++++. +.=|=+++.+.
T Consensus 327 I~-t~e~Ae~~L~~-aDlVaiGR~~I 350 (419)
T 3l5a_A 327 IN-SPESALDALQH-ADMVGMSSPFV 350 (419)
T ss_dssp CC-SHHHHHHHGGG-CSEEEESTHHH
T ss_pred CC-CHHHHHHHHHh-CCcHHHHHHHH
Confidence 43 56778899998 88899998873
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.14 Score=41.63 Aligned_cols=77 Identities=8% Similarity=0.103 Sum_probs=57.1
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
++.+..+-+++.|+|.+-+.--+.-|.+. ..|++.+++|++.+ ++|++-=||-+.+ ++++++.+.|+.=+=+
T Consensus 152 ~~~e~~~~~~~~G~~~i~~~~~~~~g~~~----g~~~~~~~~l~~~~---~ipvia~GGI~~~-~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 152 LLRDWVVEVEKRGAGEILLTSIDRDGTKS----GYDTEMIRFVRPLT---TLPIIASGGAGKM-EHFLEAFLAGADAALA 223 (253)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTSCS----CCCHHHHHHHGGGC---CSCEEEESCCCSH-HHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEeccCCCCCC----CCCHHHHHHHHHhc---CCCEEEECCCCCH-HHHHHHHHcCChHHHH
Confidence 45555555667899988774323334432 24899999999876 6999988866554 7799999999999999
Q ss_pred chHHH
Q 029540 146 NTEVR 150 (192)
Q Consensus 146 ~T~l~ 150 (192)
+|.+.
T Consensus 224 Gsal~ 228 (253)
T 1thf_D 224 ASVFH 228 (253)
T ss_dssp SHHHH
T ss_pred HHHHH
Confidence 99875
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.13 Score=41.57 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=57.8
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc---CCeE
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER---GVRK 142 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~---Gi~K 142 (192)
++.+..+.+++.|+|.+-+.-.+..|.|. .+|++.+++|++.+ ++|++-=||-..+ ++++++.+. |+.-
T Consensus 150 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~----g~~~~~~~~l~~~~---~ipvia~GGI~~~-~d~~~~~~~~~~Gad~ 221 (244)
T 2y88_A 150 DLWDVLERLDSEGCSRFVVTDITKDGTLG----GPNLDLLAGVADRT---DAPVIASGGVSSL-DDLRAIATLTHRGVEG 221 (244)
T ss_dssp EHHHHHHHHHHTTCCCEEEEETTTTTTTS----CCCHHHHHHHHTTC---SSCEEEESCCCSH-HHHHHHHTTGGGTEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCccccC----CCCHHHHHHHHHhC---CCCEEEECCCCCH-HHHHHHHhhccCCCCE
Confidence 44454444667899998876555555553 24899999999876 6999988855544 669999988 9999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
+=++|.+.
T Consensus 222 v~vG~al~ 229 (244)
T 2y88_A 222 AIVGKALY 229 (244)
T ss_dssp EEECHHHH
T ss_pred EEEcHHHH
Confidence 99999875
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.44 Score=44.11 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=97.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCccc---------cc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVE---------DY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~---------~~ 60 (192)
+|++.|-+.|-+.--.++.++.++..+++.++|+++|+.+=- ++| |+| .+|..... -.
T Consensus 33 ~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~~dlA~~~gAdGVHLg-q~dl~~~~ar~~lg~~~ii 111 (540)
T 3nl6_A 33 AGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVG-QDDMPIPMIRKLVGPDMVI 111 (540)
T ss_dssp HHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSCSHHHHHTTCSEEEEC-TTSSCHHHHHHHHCTTSEE
T ss_pred HHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCcHHHHHHcCCCEEEEC-hhhcCHHHHHHHhCCCCEE
Confidence 588999999999999999999999999999999998865432 222 332 22211000 00
Q ss_pred cccCCCHHHHHHHhhhhC---CcEEEEecCcCCCCCC-CCC--CCCCHHHHHHHHhhhcc---CCccEEeecCCCCCHHH
Q 029540 61 EAKLTDVNQAEEFIDETD---IDALAVCIGNVHGKYP-SSG--PNLKLDLLKDLHALSSK---KGVLLVLHGASGLSAEL 131 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~Tg---vD~LAvaiGt~HG~y~-~~~--p~ld~~~L~~I~~~~~~---~~iPLVlHGgSG~~~e~ 131 (192)
...-.+++|+.+ ..+.| +|++.+ |.+.--.. ++. |.+.++.|++|.+.++. .++|+|-=|| +..++
T Consensus 112 G~S~ht~eea~~-A~~~G~~~aDYv~~--Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGG--I~~~n 186 (540)
T 3nl6_A 112 GWSVGFPEEVDE-LSKMGPDMVDYIGV--GTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGG--LHPDN 186 (540)
T ss_dssp EEEECSHHHHHH-HHHTCC--CCEEEE--SCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESS--CCTTT
T ss_pred EEECCCHHHHHH-HHHcCCCCCCEEEE--cCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcC--CCHHH
Confidence 111247899887 55678 999876 56532211 111 34668999999887421 2699999995 46788
Q ss_pred HHHHHh--------cCCeEeecchHHH
Q 029540 132 IKGCIE--------RGVRKFNVNTEVR 150 (192)
Q Consensus 132 ~~~~i~--------~Gi~KINi~T~l~ 150 (192)
+.++++ .|+.=|=+.+.+.
T Consensus 187 i~~v~~~~~~~g~~~GadgvAVvsaI~ 213 (540)
T 3nl6_A 187 IERVLYQCVSSNGKRSLDGICVVSDII 213 (540)
T ss_dssp HHHHHHHCBCTTSSCBCSCEEESHHHH
T ss_pred HHHHHHhhcccccccCceEEEEeHHHh
Confidence 999887 7788888888775
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.37 Score=44.13 Aligned_cols=125 Identities=15% Similarity=0.209 Sum_probs=80.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
..+++|.+-|.+|.++-..+..+...+++.+ .+ ++.|=+ | ...++++|+..+ +.|+|
T Consensus 263 aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~---~~~~~~vi~--g----------------~v~t~e~a~~~~-~aGad 320 (511)
T 3usb_A 263 ALVKASVDAIVLDTAHGHSQGVIDKVKEVRA---KYPSLNIIA--G----------------NVATAEATKALI-EAGAN 320 (511)
T ss_dssp HHHHTTCSEEEEECSCTTSHHHHHHHHHHHH---HCTTSEEEE--E----------------EECSHHHHHHHH-HHTCS
T ss_pred HHHhhccceEEecccccchhhhhhHHHHHHH---hCCCceEEe--e----------------eeccHHHHHHHH-HhCCC
Confidence 3578899999999887544444433333332 22 233221 1 135778887755 77999
Q ss_pred EEEEecCc--CCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 81 ALAVCIGN--VHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 81 ~LAvaiGt--~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
++-|.+|- .|+.- ..+...-+++.|.++.+..+..++|+..=||-..+. ++.+|+.+|..=+-++|.+
T Consensus 321 ~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~-di~kala~GA~~V~vGs~~ 391 (511)
T 3usb_A 321 VVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSG-DMVKALAAGAHVVMLGSMF 391 (511)
T ss_dssp EEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHH-HHHHHHHTTCSEEEESTTT
T ss_pred EEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHH-HHHHHHHhCchhheecHHH
Confidence 99885432 11100 000112256778888777665579999999887665 5999999999999999976
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.6 Score=39.96 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=76.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEec--CcC-------CC---------CCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCI--GNV-------HG---------KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvai--Gt~-------HG---------~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
.+|++|+. +.+.|+|.+.|+- ||. +. .+. +.| .++.|.++++.+. ++|+..=||--
T Consensus 193 ~~~e~a~~-~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~-g~~--~~~~l~~v~~~~~--~ipvia~GGI~ 266 (332)
T 1vcf_A 193 LSREAALA-LRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEI-GIP--TARAILEVREVLP--HLPLVASGGVY 266 (332)
T ss_dssp CCHHHHHH-HTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTC-SCB--HHHHHHHHHHHCS--SSCEEEESSCC
T ss_pred CCHHHHHH-HHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhc-ccc--HHHHHHHHHHhcC--CCeEEEECCCC
Confidence 56888875 6688999999963 321 21 111 112 4677888888773 59999999887
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.+. ++.+++..|..=|.++|.+..+.. . . ..-.....+.+.+.++..|...|..
T Consensus 267 ~~~-d~~kal~~GAd~V~igr~~l~~~~----~-G---~~gv~~~~~~l~~el~~~m~~~G~~ 320 (332)
T 1vcf_A 267 TGT-DGAKALALGADLLAVARPLLRPAL----E-G---AERVAAWIGDYLEELRTALFAIGAR 320 (332)
T ss_dssp SHH-HHHHHHHHTCSEEEECGGGHHHHT----T-C---HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHH-HHHHHHHhCCChHhhhHHHHHHHh----c-c---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 655 478888899999999999876541 1 1 1233445677777888888888864
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.54 Score=39.21 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=55.0
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEee
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFN 144 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KIN 144 (192)
+++++++ +.+.|.|++ ++.|..-|.-. .-.+++.|+.|++.+ ++|++.-| |+. .++++++++.|..=|=
T Consensus 136 ~~~~a~~-~~~~gad~v-~~~~~~~Gt~~---~~~~~~~l~~i~~~~---~iPviv~g--GI~t~eda~~~~~~GAdgVi 205 (264)
T 1xm3_A 136 DVVLARK-LEELGVHAI-MPGASPIGSGQ---GILNPLNLSFIIEQA---KVPVIVDA--GIGSPKDAAYAMELGADGVL 205 (264)
T ss_dssp CHHHHHH-HHHHTCSCB-EECSSSTTCCC---CCSCHHHHHHHHHHC---SSCBEEES--CCCSHHHHHHHHHTTCSEEE
T ss_pred CHHHHHH-HHHhCCCEE-EECCcccCCCC---CCCCHHHHHHHHhcC---CCCEEEEe--CCCCHHHHHHHHHcCCCEEE
Confidence 6777766 567889998 55443333211 112478899998866 69999887 664 6789999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 206 VGSAi~ 211 (264)
T 1xm3_A 206 LNTAVS 211 (264)
T ss_dssp ESHHHH
T ss_pred EcHHHh
Confidence 999864
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.36 Score=42.14 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=83.7
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|-|=+.|= ++|.=.+...||++-.++. |-.- +| ++...+ ....
T Consensus 159 ~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~---v~vRls~~~-~~~g- 233 (358)
T 4a3u_A 159 RHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKER---TAVRLSPNG-EIQG- 233 (358)
T ss_dssp HHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGG---EEEEECCSS-CBTT-
T ss_pred HHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccc---eEEEeccCc-ccCC-
Confidence 378999999999988653 5787788889998887752 1100 11 222111 1110
Q ss_pred cccccCCCHHH---HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 59 DYEAKLTDVNQ---AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 59 ~~~~~~T~pee---a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
.....+.++ ..+-++..|+|++-++-|+.++.+... ...+ ..++|++.+ ..|++.-| +.+.++..++
T Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~--~a~~ik~~~---~~~v~~~g--~~~~~~ae~~ 303 (358)
T 4a3u_A 234 --TVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKT-DQPK--LSPEIRKVF---KPPLVLNQ--DYTFETAQAA 303 (358)
T ss_dssp --BCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBC-SSCC--CHHHHHHHC---CSCEEEES--SCCHHHHHHH
T ss_pred --CcccchHHHHHHHHHhhhccCccccccccccccCccccc-ccHH--HHHHHHHhc---CCcEEEeC--CCCHHHHHHH
Confidence 001112222 233355679999999999998887642 3333 357788776 47777644 5578889999
Q ss_pred HhcCC-eEeecchHH
Q 029540 136 IERGV-RKFNVNTEV 149 (192)
Q Consensus 136 i~~Gi-~KINi~T~l 149 (192)
++.|. -=|=++..+
T Consensus 304 l~~G~aD~V~~gR~~ 318 (358)
T 4a3u_A 304 LDSGVADAISFGRPF 318 (358)
T ss_dssp HHHTSCSEEEESHHH
T ss_pred HHcCCceEeHhhHHH
Confidence 99984 466666554
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.81 Score=39.31 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=71.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCC--------C--------CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKY--------P--------SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS 128 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y--------~--------~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~ 128 (192)
.++++|+. +.+.|+|.+-++. ||.. . .....-.++.|.++++.+. ++|++.=||-..+
T Consensus 190 ~~~~~a~~-a~~~Gad~I~v~~---~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~--~ipvia~GGI~~~ 263 (349)
T 1p0k_A 190 MSKASAGK-LYEAGAAAVDIGG---YGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFP--ASTMIASGGLQDA 263 (349)
T ss_dssp CCHHHHHH-HHHHTCSEEEEEC------------------CCGGGGTTCSCCHHHHHHHHHHHCT--TSEEEEESSCCSH
T ss_pred CCHHHHHH-HHHcCCCEEEEcC---CCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcC--CCeEEEECCCCCH
Confidence 45888876 4578999999963 3321 0 0011124677888887652 5999988865544
Q ss_pred HHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 129 AELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 129 ~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+++.+|..=|-++|.+....... .+ .-+....+.+.+.++..|...|..
T Consensus 264 -~d~~k~l~~GAd~V~iG~~~l~~~~~~------g~-~~~~~~~~~~~~~l~~~m~~~G~~ 316 (349)
T 1p0k_A 264 -LDVAKAIALGASCTGMAGHFLKALTDS------GE-EGLLEEIQLILEELKLIMTVLGAR 316 (349)
T ss_dssp -HHHHHHHHTTCSEEEECHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHcCCCEEEEcHHHHHHHhhc------CH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 568888999999999999887654310 01 122344566666777778877753
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.64 Score=40.25 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=77.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++.+.||+.+-+...+-++++.++..+.|.+..- ...+.|.+ + ..| ++++|.+|+++ .
T Consensus 156 ~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDa--------n---------~~~-~~~~a~~~~~~l~~~ 217 (371)
T 2ovl_A 156 RFLAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDA--------N---------MKW-TVDGAIRAARALAPF 217 (371)
T ss_dssp HHHHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEEC--------T---------TCS-CHHHHHHHHHHHGGG
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEC--------C---------CCC-CHHHHHHHHHHHHhc
Confidence 4678899999998877678888887777776552 12222211 1 123 57888888654 5
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
|++++-= + -|.-|++-+++|++.+ ++|++.-+ |=.+.++++++++.| +.=||+.
T Consensus 218 ~i~~iEq----------P-~~~~d~~~~~~l~~~~---~iPI~~dE-~~~~~~~~~~~i~~~~~d~v~ik 272 (371)
T 2ovl_A 218 DLHWIEE----------P-TIPDDLVGNARIVRES---GHTIAGGE-NLHTLYDFHNAVRAGSLTLPEPD 272 (371)
T ss_dssp CCSEEEC----------C-SCTTCHHHHHHHHHHH---CSCEEECT-TCCSHHHHHHHHHHTCCSEECCC
T ss_pred CCCEEEC----------C-CCcccHHHHHHHHhhC---CCCEEeCC-CCCCHHHHHHHHHcCCCCEEeeC
Confidence 8887741 1 2345899999999988 69988755 455688899999887 5566764
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.16 Score=44.39 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCc--CCC-CC-CC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGN--VHG-KY-PS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt--~HG-~y-~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
+++++|+.. .+.|+|++-|+.|. .|. .+ .+ ..| .+..|.++.+..+..++|++.=||-..+.+ +.+|+.+|
T Consensus 170 ~t~e~A~~a-~~aGaD~I~v~~g~G~~~~~r~~~g~~~p--~~~~l~~v~~~~~~~~ipvIa~GGI~~g~d-i~kAlalG 245 (351)
T 2c6q_A 170 VTGEMVEEL-ILSGADIIKVGIGPGSVCTTRKKTGVGYP--QLSAVMECADAAHGLKGHIISDGGCSCPGD-VAKAFGAG 245 (351)
T ss_dssp CSHHHHHHH-HHTTCSEEEECSSCSTTBCHHHHHCBCCC--HHHHHHHHHHHHHHTTCEEEEESCCCSHHH-HHHHHHTT
T ss_pred CCHHHHHHH-HHhCCCEEEECCCCCcCcCccccCCCCcc--HHHHHHHHHHHHhhcCCcEEEeCCCCCHHH-HHHHHHcC
Confidence 578999874 47899999887532 110 00 00 123 466777777765444799999998876655 89999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
..=+-++|.+.
T Consensus 246 A~~V~vG~~fl 256 (351)
T 2c6q_A 246 ADFVMLGGMLA 256 (351)
T ss_dssp CSEEEESTTTT
T ss_pred CCceeccHHHh
Confidence 99999999885
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=1.6 Score=37.61 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=79.5
Q ss_pred hhhh-cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---h
Q 029540 2 EAIV-LGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---E 76 (192)
Q Consensus 2 ~ai~-~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~ 76 (192)
++++ .||+.+=+...+-++++.++..+.|.+..-. ..+.|.+ + .. -++++|.+|++ +
T Consensus 152 ~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDa--------n---------~~-~~~~~a~~~~~~l~~ 213 (370)
T 1nu5_A 152 EMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDV--------N---------QG-WDEQTASIWIPRLEE 213 (370)
T ss_dssp HHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEEC--------T---------TC-CCHHHHHHHHHHHHH
T ss_pred HHHHhCCccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEEC--------C---------CC-CCHHHHHHHHHHHHh
Confidence 4667 9999999988877788888877777665432 2122221 1 12 25788888865 4
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
-+++++- .+ -|.-|++-+++|++.+ ++|++.-+ |=...++++++++.| +.=||+...
T Consensus 214 ~~i~~iE----------qP-~~~~~~~~~~~l~~~~---~ipIa~dE-~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (370)
T 1nu5_A 214 AGVELVE----------QP-VPRANFGALRRLTEQN---GVAILADE-SLSSLSSAFELARDHAVDAFSLKLC 271 (370)
T ss_dssp HTCCEEE----------CC-SCTTCHHHHHHHHHHC---SSEEEEST-TCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred cCcceEe----------CC-CCcccHHHHHHHHHhC---CCCEEeCC-CCCCHHHHHHHHHhCCCCEEEEchh
Confidence 6888864 11 2445899999999887 69988765 557788999999887 667787543
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.81 Score=41.56 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=88.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|-+.|.++++.|+. ...++++++||.+|..+=.|+ .|.+|+++ +-+.|.|.
T Consensus 125 ea~~~GAD~ILLi~a~l~~----~~l~~l~~~a~~lgm~~LvEv-------------------h~~eE~~~-A~~lga~i 180 (452)
T 1pii_A 125 LARYYQADACLLMLSVLDD----DQYRQLAAVAHSLEMGVLTEV-------------------SNEEEQER-AIALGAKV 180 (452)
T ss_dssp HHHHTTCSEEEEETTTCCH----HHHHHHHHHHHHTTCEEEEEE-------------------CSHHHHHH-HHHTTCSE
T ss_pred HHHHcCCCEEEEEcccCCH----HHHHHHHHHHHHcCCeEEEEe-------------------CCHHHHHH-HHHCCCCE
Confidence 4678999999999999995 457899999999988777763 34466665 34679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+.+.--|.|. -..|+++..++...+.. ++++|-=||-.. .++++++.++ +.=+=|++.+..
T Consensus 181 IGinnr~L~t------~~~dl~~~~~L~~~ip~-~~~vIaEsGI~t-~edv~~~~~~-a~avLVGealmr 241 (452)
T 1pii_A 181 VGINNRDLRD------LSIDLNRTRELAPKLGH-NVTVISESGINT-YAQVRELSHF-ANGFLIGSALMA 241 (452)
T ss_dssp EEEESEETTT------TEECTHHHHHHHHHHCT-TSEEEEESCCCC-HHHHHHHTTT-CSEEEECHHHHT
T ss_pred EEEeCCCCCC------CCCCHHHHHHHHHhCCC-CCeEEEECCCCC-HHHHHHHHHh-CCEEEEcHHHcC
Confidence 8888766653 45689999998887632 467775554443 5779999999 998999998853
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=1.4 Score=38.13 Aligned_cols=116 Identities=9% Similarity=-0.030 Sum_probs=77.4
Q ss_pred hhhhcCCCEeEeeCCCC------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh
Q 029540 2 EAIVLGFDSLMVDGSHL------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
++++.||+.|=+...+- ++++.++..+.|.+..-. ++.+=.+. + ..+ ++++|.+|++
T Consensus 159 ~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~-d~~l~vDa------n---------~~~-~~~~a~~~~~ 221 (382)
T 1rvk_A 159 TLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGP-DIRLMIDA------F---------HWY-SRTDALALGR 221 (382)
T ss_dssp HHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCT-TSEEEEEC------C---------TTC-CHHHHHHHHH
T ss_pred HHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCC-CCeEEEEC------C---------CCC-CHHHHHHHHH
Confidence 46788999999987763 567777766666654421 23222211 1 123 5889988865
Q ss_pred h---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcC-CeEeecchHH
Q 029540 76 E---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 76 ~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~G-i~KINi~T~l 149 (192)
. .+++++-- + -|.-|++-+++|++.+ ++|++. |.|=.+ .++++++++.| +.=||+....
T Consensus 222 ~l~~~~i~~iE~----------P-~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~~i~~~~~d~v~ik~~~ 285 (382)
T 1rvk_A 222 GLEKLGFDWIEE----------P-MDEQSLSSYKWLSDNL---DIPVVG-PESAAGKHWHRAEWIKAGACDILRTGVND 285 (382)
T ss_dssp HHHTTTCSEEEC----------C-SCTTCHHHHHHHHHHC---SSCEEE-CSSCSSHHHHHHHHHHTTCCSEEEECHHH
T ss_pred HHHhcCCCEEeC----------C-CChhhHHHHHHHHhhC---CCCEEE-eCCccCcHHHHHHHHHcCCCCEEeeCchh
Confidence 4 58887741 1 2345899999999887 699888 555566 78899999887 6667775433
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.94 Score=39.53 Aligned_cols=114 Identities=7% Similarity=0.062 Sum_probs=79.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.+-+-..+-++++.++..+.|.+..-. ++.+=.+. + ..| ++++|.+|+++ -+
T Consensus 175 ~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~-~~~l~vDa------n---------~~~-~~~~a~~~~~~l~~~~ 237 (392)
T 1tzz_A 175 GYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGK-DAQLAVDA------N---------GRF-NLETGIAYAKMLRDYP 237 (392)
T ss_dssp HHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTT-TCEEEEEC------T---------TCC-CHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCC-CCeEEEEC------C---------CCC-CHHHHHHHHHHHHHcC
Confidence 46788999999988776778888877777665522 23222111 1 123 58899999765 47
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-----CeEeecch
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-----VRKFNVNT 147 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-----i~KINi~T 147 (192)
++++- .+ -|.-|++-+++|++.+ ++|++.-+ |=...++++++++.| +.=||+..
T Consensus 238 i~~iE----------qP-~~~~d~~~~~~l~~~~---~iPIa~dE-~~~~~~~~~~~i~~~~~~~~~d~v~ik~ 296 (392)
T 1tzz_A 238 LFWYE----------EV-GDPLDYALQAALAEFY---PGPMATGE-NLFSHQDARNLLRYGGMRPDRDWLQFDC 296 (392)
T ss_dssp CSEEE----------CC-SCTTCHHHHHHHTTTC---CSCEEECT-TCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred CCeec----------CC-CChhhHHHHHHHHhhC---CCCEEECC-CCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence 88764 11 2335899999998877 69998855 557888999999988 67777753
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.6 Score=40.11 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=77.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++.+.||+.|-+-..+-++++.++..+.|.+..-. ++.+=... + ..| ++++|.+|+++ .|
T Consensus 154 ~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~-~~~l~vDa------n---------~~~-~~~~a~~~~~~l~~~~ 216 (359)
T 1mdl_A 154 TAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGD-DFGIMVDY------N---------QSL-DVPAAIKRSQALQQEG 216 (359)
T ss_dssp HHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCS-SSEEEEEC------T---------TCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHhCC-CCEEEEEC------C---------CCC-CHHHHHHHHHHHHHhC
Confidence 56788999999987765677777777777665521 33331110 1 123 57888888654 58
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
++++-=. -|.-|++-+++|++.+ ++|++.-+. =.+.++++++++.| +.=||+..
T Consensus 217 i~~iE~P-----------~~~~~~~~~~~l~~~~---~iPI~~de~-~~~~~~~~~~i~~~~~d~v~ik~ 271 (359)
T 1mdl_A 217 VTWIEEP-----------TLQHDYEGHQRIQSKL---NVPVQMGEN-WLGPEEMFKALSIGACRLAMPDA 271 (359)
T ss_dssp CSCEECC-----------SCTTCHHHHHHHHHTC---SSCEEECTT-CCSHHHHHHHHHTTCCSEECCBT
T ss_pred CCeEECC-----------CChhhHHHHHHHHHhC---CCCEEeCCC-CCCHHHHHHHHHcCCCCEEeecc
Confidence 8877311 1335899999999887 699887554 45688899999887 55677753
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.16 Score=44.90 Aligned_cols=78 Identities=21% Similarity=0.387 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCC---HHHHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLK---LDLLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld---~~~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~G 139 (192)
.+++++++.++.-+.|++++-+=...+...+. .+.+. ++.|++|++.+ ++|+++=| |.|++.++.+++.+.|
T Consensus 135 ~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~---~vPVivK~vG~g~s~~~A~~l~~aG 211 (368)
T 3vkj_A 135 YGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKEL---SVPIIVKESGNGISMETAKLLYSYG 211 (368)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC---SSCEEEECSSSCCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHc---CCCEEEEeCCCCCCHHHHHHHHhCC
Confidence 56889999998889999998865443333221 12222 44556666555 79999875 4578999999999999
Q ss_pred CeEeec
Q 029540 140 VRKFNV 145 (192)
Q Consensus 140 i~KINi 145 (192)
+.=|.+
T Consensus 212 ad~I~V 217 (368)
T 3vkj_A 212 IKNFDT 217 (368)
T ss_dssp CCEEEC
T ss_pred CCEEEE
Confidence 999988
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.36 Score=42.33 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhh-------hccCCccEEeecCCCCCHHHHHHH
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHAL-------SSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~-------~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
..+|++|+..+ +.|+|.+-|+.|- |+. +..+...-.++.|.++.+. ++..++|+..=||-..+ +++.++
T Consensus 219 i~t~e~a~~~~-~~Gad~i~vg~Gg-~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~-~dv~ka 295 (393)
T 2qr6_A 219 VNDYTTALHMM-RTGAVGIIVGGGE-NTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENS-GDVVKA 295 (393)
T ss_dssp CCSHHHHHHHH-TTTCSEEEESCCS-CCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSH-HHHHHH
T ss_pred cCCHHHHHHHH-HcCCCEEEECCCc-ccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCH-HHHHHH
Confidence 36789998876 5899999996543 432 1111112257777777776 41102999988876655 469999
Q ss_pred HhcCCeEeecchHHHH
Q 029540 136 IERGVRKFNVNTEVRK 151 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~ 151 (192)
+.+|..=+.++|.+..
T Consensus 296 lalGA~~V~iG~~~l~ 311 (393)
T 2qr6_A 296 IACGADAVVLGSPLAR 311 (393)
T ss_dssp HHHTCSEEEECGGGGG
T ss_pred HHcCCCEEEECHHHHc
Confidence 9999999999999743
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=1.3 Score=38.67 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=78.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++.||+.|-+-...-++++.++..+.|.+..- ...+.|.+ + ..| ++++|.+|+++ .
T Consensus 172 ~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDa--------n---------~~~-~~~~a~~~~~~l~~~ 233 (393)
T 2og9_A 172 ASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDA--------N---------QQW-DRPTAQRMCRIFEPF 233 (393)
T ss_dssp HHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEEC--------T---------TCC-CHHHHHHHHHHHGGG
T ss_pred HHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEEC--------C---------CCC-CHHHHHHHHHHHHhh
Confidence 5678899999998776667777777776666542 22233311 1 123 58899888755 5
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
++|++-- + -|.-|++-+++|++.+ ++|++.= +|=.+.++++++++.| +.=||+...
T Consensus 234 ~i~~iE~----------P-~~~~~~~~~~~l~~~~---~iPIa~d-E~~~~~~~~~~~i~~~~~d~v~ik~~ 290 (393)
T 2og9_A 234 NLVWIEE----------P-LDAYDHEGHAALALQF---DTPIATG-EMLTSAAEHGDLIRHRAADYLMPDAP 290 (393)
T ss_dssp CCSCEEC----------C-SCTTCHHHHHHHHHHC---SSCEEEC-TTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred CCCEEEC----------C-CCcccHHHHHHHHHhC---CCCEEeC-CCcCCHHHHHHHHHCCCCCEEeeCcc
Confidence 8887741 1 2345899999999888 6998864 4555778999999888 666777543
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.32 Score=38.78 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=57.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
++|.+..+-+.+.|+|.+-+.--+.-|.+ ...+++.++++++.+ ++|++.=||-.. .+++.++.+.|+.=+=
T Consensus 154 ~~~~e~~~~~~~~G~d~i~~~~~~~~g~~----~~~~~~~i~~l~~~~---~~pvia~GGi~~-~~~~~~~~~~Ga~~v~ 225 (253)
T 1h5y_A 154 LDAVKWAKEVEELGAGEILLTSIDRDGTG----LGYDVELIRRVADSV---RIPVIASGGAGR-VEHFYEAAAAGADAVL 225 (253)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTTTTC----SCCCHHHHHHHHHHC---SSCEEEESCCCS-HHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHhCCCCEEEEecccCCCCc----CcCCHHHHHHHHHhc---CCCEEEeCCCCC-HHHHHHHHHcCCcHHH
Confidence 35555455566789999887432322322 234899999999887 699998886554 4889999999999999
Q ss_pred cchHHH
Q 029540 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 226 vgsal~ 231 (253)
T 1h5y_A 226 AASLFH 231 (253)
T ss_dssp ESHHHH
T ss_pred HHHHHH
Confidence 999884
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.31 Score=49.00 Aligned_cols=126 Identities=18% Similarity=0.195 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|+++|.+.|-+=.|.. |++..+..+++|++.|..|++-+...+..+|... ..++|+.+.++++ +.|
T Consensus 653 ~a~~~g~d~irif~sl~----~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r------~~~~~~~~~~~~~~~~~~G 722 (1165)
T 2qf7_A 653 QAAKGGIDLFRVFDCLN----WVENMRVSMDAIAEENKLCEAAICYTGDILNSAR------PKYDLKYYTNLAVELEKAG 722 (1165)
T ss_dssp HHHHHTCCEEEEECTTC----CGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTS------GGGCHHHHHHHHHHHHHTT
T ss_pred HHHhcCcCEEEEEeeHH----HHHHHHHHHHHHHhccceEEEEEEEeccccCCCC------CCCCHHHHHHHHHHHHHcC
Confidence 57788887765433432 4556677889999999988887754432233211 2367887777755 579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.- .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-.|++.|+.-|..
T Consensus 723 a~~i~l~--DT~G~~---~P~~~~~lv~~l~~~~---~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ 783 (1165)
T 2qf7_A 723 AHIIAVK--DMAGLL---KPAAAKVLFKALREAT---GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDA 783 (1165)
T ss_dssp CSEEEEE--ETTCCC---CHHHHHHHHHHHHHHC---SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEe--CccCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEe
Confidence 9987764 333332 2544467778888777 58888777 8999999999999999998753
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.21 Score=40.43 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=77.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+++++|.+-|++....++-.+ .+.++ +.+| +++..-.|.|-- .+ +. +..-+++.+..+.+++.
T Consensus 90 ~~~~~Gad~V~lg~~~l~~p~------~~~~~-~~~g~~i~~~~d~~~~~v~~-~g----~~-~~~~~~~~e~~~~~~~~ 156 (241)
T 1qo2_A 90 KLRKLGYRRQIVSSKVLEDPS------FLKSL-REIDVEPVFSLDTRGGRVAF-KG----WL-AEEEIDPVSLLKRLKEY 156 (241)
T ss_dssp HHHHTTCCEEEECHHHHHCTT------HHHHH-HTTTCEEEEEEEEETTEECC-TT----CS-SCSCCCHHHHHHHHHTT
T ss_pred HHHHCCCCEEEECchHhhChH------HHHHH-HHcCCcEEEEEEecCCEEEE-CC----ce-ecCCCCHHHHHHHHHhC
Confidence 467888888888766443222 12233 3333 223322233311 00 00 11124667765557789
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-----C-CeEeecchHHH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-----G-VRKFNVNTEVR 150 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-----G-i~KINi~T~l~ 150 (192)
|++.+-+.-=+.-|.+. ..|+++++++++.+ ++|++-=||-+.+ ++++++.+. | +.=+=+++.+.
T Consensus 157 G~~~i~~t~~~~~g~~~----g~~~~~i~~l~~~~---~iPvia~GGI~~~-~d~~~~~~~~~~~~G~adgv~vgsal~ 227 (241)
T 1qo2_A 157 GLEEIVHTEIEKDGTLQ----EHDFSLTKKIAIEA---EVKVLAAGGISSE-NSLKTAQKVHTETNGLLKGVIVGRAFL 227 (241)
T ss_dssp TCCEEEEEETTHHHHTC----CCCHHHHHHHHHHH---TCEEEEESSCCSH-HHHHHHHHHHHHTTTSEEEEEECHHHH
T ss_pred CCCEEEEEeecccccCC----cCCHHHHHHHHHhc---CCcEEEECCCCCH-HHHHHHHhcccccCCeEeEEEeeHHHH
Confidence 99988773212224443 23899999999988 6999988755543 668899888 9 99999999874
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.15 Score=41.30 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+.+++.|+|+|-++=-+.-+.+ ...+++.+++|+ .+ ++|+.+=||-- +.+++.++.+.|+.+|-
T Consensus 30 ~~~~~~a~~~~~~Gad~i~v~d~~~~~~~----~~~~~~~i~~i~-~~---~ipvi~~Ggi~-~~~~~~~~~~~Gad~V~ 100 (241)
T 1qo2_A 30 KDPVELVEKLIEEGFTLIHVVDLSNAIEN----SGENLPVLEKLS-EF---AEHIQIGGGIR-SLDYAEKLRKLGYRRQI 100 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHHC----CCTTHHHHHHGG-GG---GGGEEEESSCC-SHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHHHHcCCCEEEEecccccccC----CchhHHHHHHHH-hc---CCcEEEECCCC-CHHHHHHHHHCCCCEEE
Confidence 47888777777899999988632222222 224688888887 55 69999988774 45689999999999999
Q ss_pred cchHHHH
Q 029540 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+++.+..
T Consensus 101 lg~~~l~ 107 (241)
T 1qo2_A 101 VSSKVLE 107 (241)
T ss_dssp ECHHHHH
T ss_pred ECchHhh
Confidence 9998743
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.38 Score=43.19 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=83.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+-|.+|++.-.++..+...+++.+ .. ++.|= .|. ..+++.++..+ +.|+|
T Consensus 240 ~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~---~~p~~pvi--~G~----------------v~t~~~a~~~~-~~Gad 297 (491)
T 1zfj_A 240 ALFEAGADAIVIDTAHGHSAGVLRKIAEIRA---HFPNRTLI--AGN----------------IATAEGARALY-DAGVD 297 (491)
T ss_dssp HHHHHTCSEEEECCSCTTCHHHHHHHHHHHH---HCSSSCEE--EEE----------------ECSHHHHHHHH-HTTCS
T ss_pred HHHHcCCCeEEEeeecCcchhHHHHHHHHHH---HCCCCcEe--CCC----------------ccCHHHHHHHH-HcCCC
Confidence 4678899999999987666655544444433 33 44442 222 23457777655 79999
Q ss_pred EEEEecC--cCCCC--CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIG--NVHGK--YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiG--t~HG~--y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+-|++| +.|+. +.. ...-.++.|+++.+..+..++|+..=||-..+. ++.+++.+|..=+=++|.+.
T Consensus 298 ~I~vg~g~g~~~~tr~~~~-~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~-di~kal~~GA~~v~vG~~~~ 369 (491)
T 1zfj_A 298 VVKVGIGPGSICTTRVVAG-VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSG-DIVKALAAGGNAVMLGSMFA 369 (491)
T ss_dssp EEEECSSCCTTBCHHHHTC-CCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHH-HHHHHHHTTCSEEEESTTTT
T ss_pred EEEECccCCcceEEeeecC-CCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHH-HHHHHHHcCCcceeeCHHhh
Confidence 9988763 23321 011 112267888888876544479999999887665 58899999999999999886
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=92.90 E-value=1.3 Score=37.61 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=79.9
Q ss_pred hhhhcCCCEeEeeCCC-----------CCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029540 2 EAIVLGFDSLMVDGSH-----------LPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----------l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
+|.++ |+-|-+-+.. -.++.+.+.+.++++..++ .+++|-.=+-. |..+ .++.+
T Consensus 79 ~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--G~~~-----------~~~~~ 144 (318)
T 1vhn_A 79 ILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRL--GWEK-----------NEVEE 144 (318)
T ss_dssp HHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEES--CSSS-----------CCHHH
T ss_pred HHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecC--CCCh-----------HHHHH
Confidence 35566 7777765431 1234556777788777665 45555444321 1111 11224
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchH
Q 029540 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTE 148 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~ 148 (192)
..+-+++.|+|.|.|.-|+.-+.|.+ ..+++.+++|++ ++|++.=||-- +.+++.++++ .|+.-|-+++.
T Consensus 145 ~a~~l~~~G~d~i~v~g~~~~~~~~~---~~~~~~i~~i~~-----~ipVi~~GgI~-s~~da~~~l~~~gad~V~iGR~ 215 (318)
T 1vhn_A 145 IYRILVEEGVDEVFIHTRTVVQSFTG---RAEWKALSVLEK-----RIPTFVSGDIF-TPEDAKRALEESGCDGLLVARG 215 (318)
T ss_dssp HHHHHHHTTCCEEEEESSCTTTTTSS---CCCGGGGGGSCC-----SSCEEEESSCC-SHHHHHHHHHHHCCSEEEESGG
T ss_pred HHHHHHHhCCCEEEEcCCCccccCCC---CcCHHHHHHHHc-----CCeEEEECCcC-CHHHHHHHHHcCCCCEEEECHH
Confidence 44446789999999977766555653 246677777665 49999988644 4567888888 79999999997
Q ss_pred H
Q 029540 149 V 149 (192)
Q Consensus 149 l 149 (192)
+
T Consensus 216 ~ 216 (318)
T 1vhn_A 216 A 216 (318)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=2.1 Score=36.64 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCHHHHHHHhhh---hCCcEEEEec-CcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 64 LTDVNQAEEFIDE---TDIDALAVCI-GNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 64 ~T~peea~~Fv~~---TgvD~LAvai-Gt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
..+++++.+.+++ .|+|.+-+.. |.....|.+ +.+.++.+.|+++-+...+.++|+.+|-. .++.++.+++.
T Consensus 171 ~~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~---~~~~i~~al~~ 247 (426)
T 2r8c_A 171 ADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAY---TPAAIARAVRC 247 (426)
T ss_dssp CCSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEEC---SHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeC---ChHHHHHHHHc
Confidence 3678888888765 5888877653 333333321 13578888898887777667899999986 45667777777
Q ss_pred CCeEeecch
Q 029540 139 GVRKFNVNT 147 (192)
Q Consensus 139 Gi~KINi~T 147 (192)
|+.-|--.+
T Consensus 248 G~~~i~H~~ 256 (426)
T 2r8c_A 248 GVRTIEHGN 256 (426)
T ss_dssp TCSEEEECT
T ss_pred CCCEEecCC
Confidence 766554333
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.59 Score=37.50 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=78.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
++.++|.+.|-+.+..- ++. .+++++.++++|+.+=.+ .++ ..| |+++++..+. |+|.
T Consensus 78 ~~~~aGad~i~vh~~~~--~~~---~~~~~~~~~~~g~~~~~d--~l~-------------~~T-~~~~~~~~~~-g~d~ 135 (218)
T 3jr2_A 78 MAFEAGADWITVSAAAH--IAT---IAACKKVADELNGEIQIE--IYG-------------NWT-MQDAKAWVDL-GITQ 135 (218)
T ss_dssp HHHHHTCSEEEEETTSC--HHH---HHHHHHHHHHHTCEEEEE--CCS-------------SCC-HHHHHHHHHT-TCCE
T ss_pred HHHhcCCCEEEEecCCC--HHH---HHHHHHHHHHhCCcccee--eee-------------cCC-HHHHHHHHHc-Cccc
Confidence 46788888888877653 222 245666677666533111 111 234 7888886544 9998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a 152 (192)
+.+-.|.--| .. ....-.+.|+.|++... .++|++.=|| +..++++++++.|..=+=+++.+..+
T Consensus 136 v~~~~~~~~~-~~--g~~~~~~~l~~i~~~~~-~~~pi~v~GG--I~~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 136 AIYHRSRDAE-LA--GIGWTTDDLDKMRQLSA-LGIELSITGG--IVPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp EEEECCHHHH-HH--TCCSCHHHHHHHHHHHH-TTCEEEEESS--CCGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred eeeeeccccc-cC--CCcCCHHHHHHHHHHhC-CCCCEEEECC--CCHHHHHHHHHcCCCEEEEchhhcCC
Confidence 8764332222 11 13334555666766542 2699999995 46788999999999999999988643
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.77 E-value=1.6 Score=35.40 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=75.6
Q ss_pred hhhhcCCCEeE--eeCCCC---CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCC--HHHHHHHh
Q 029540 2 EAIVLGFDSLM--VDGSHL---PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD--VNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM--~D~S~l---~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~--peea~~Fv 74 (192)
+|+++|++-|- +.-|.+ .++.-.+..+++++.++ ++.|--.+.. ..+|+ ..++.+-+
T Consensus 78 ~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~--pv~vKvi~e~--------------~~l~~~~~~~~a~~a 141 (225)
T 1mzh_A 78 EAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP--SAVHKVIVET--------------PYLNEEEIKKAVEIC 141 (225)
T ss_dssp HHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT--TSEEEEECCG--------------GGCCHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc--CceEEEEEeC--------------CCCCHHHHHHHHHHH
Confidence 57889998876 344432 44555555555655554 4544331111 01222 23445556
Q ss_pred hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029540 75 DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
++.|+|++..+- |.|.+ ..+++.++.+++.++ .++|+..=||--. .++..+.++.|...|=++.
T Consensus 142 ~eaGad~I~tst----g~~~g---ga~~~~i~~v~~~v~-~~ipVia~GGI~t-~~da~~~l~aGA~~iG~s~ 205 (225)
T 1mzh_A 142 IEAGADFIKTST----GFAPR---GTTLEEVRLIKSSAK-GRIKVKASGGIRD-LETAISMIEAGADRIGTSS 205 (225)
T ss_dssp HHHTCSEEECCC----SCSSS---CCCHHHHHHHHHHHT-TSSEEEEESSCCS-HHHHHHHHHTTCSEEEESC
T ss_pred HHhCCCEEEECC----CCCCC---CCCHHHHHHHHHHhC-CCCcEEEECCCCC-HHHHHHHHHhCchHHHHcc
Confidence 678999995554 55543 257888899988873 2599999998885 5678888899988654443
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.64 Score=39.94 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=55.2
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCe
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVR 141 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~ 141 (192)
...||.+|.+.+-..|+|-+=- +|.-+ ...-.+++|+++.+..+ -++.+=-|.|+..+.+++.++ .|+.
T Consensus 164 ~~~d~~~Ale~Li~lGvdrILT-----SG~~~--~a~~Gl~~Lk~Lv~~a~---~rI~ImaGGGV~~~Ni~~l~~~tG~~ 233 (287)
T 3iwp_A 164 MVHDPMAALETLLTLGFERVLT-----SGCDS--SALEGLPLIKRLIEQAK---GRIVVMPGGGITDRNLQRILEGSGAT 233 (287)
T ss_dssp GCSCHHHHHHHHHHHTCSEEEE-----CTTSS--STTTTHHHHHHHHHHHT---TSSEEEECTTCCTTTHHHHHHHHCCS
T ss_pred ccCCHHHHHHHHHHcCCCEEEC-----CCCCC--ChHHhHHHHHHHHHHhC---CCCEEEECCCcCHHHHHHHHHhhCCC
Confidence 3468999999998989998776 45422 24567888998887763 233333566999999999987 9998
Q ss_pred Eeecc
Q 029540 142 KFNVN 146 (192)
Q Consensus 142 KINi~ 146 (192)
-+..+
T Consensus 234 ~~H~S 238 (287)
T 3iwp_A 234 EFHCS 238 (287)
T ss_dssp EEEEC
T ss_pred EEeEC
Confidence 88875
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.74 E-value=1.6 Score=37.76 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=87.6
Q ss_pred hhhhcCCCEeE----eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEe--c-cccccCCCCCccccccccCCCHHH---HH
Q 029540 2 EAIVLGFDSLM----VDGSHLPFKDNISHTKYISFLAHSKGMLVEAE--L-GRLSGTEDGLTVEDYEAKLTDVNQ---AE 71 (192)
Q Consensus 2 ~ai~~GFtSVM----~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaE--l-G~i~g~e~~~~~~~~~~~~T~pee---a~ 71 (192)
+|+++|++-|- ++-..-.-.++++...++++-|+++|+++=+| + ...|+.- . .-++|+- +.
T Consensus 136 ~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v---~------~~~dp~~Va~aa 206 (307)
T 3fok_A 136 SMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKV---V------NDLSTDAVIQSV 206 (307)
T ss_dssp HHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEE---E------ECCSHHHHHHHH
T ss_pred HHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCc---C------CCCCHHHHHHHH
Confidence 68999998844 65333344999999999999999999999999 2 3322210 0 0156654 34
Q ss_pred HHhhhhCCc----EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-C-HHH---HHHHHh-cCCe
Q 029540 72 EFIDETDID----ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-S-AEL---IKGCIE-RGVR 141 (192)
Q Consensus 72 ~Fv~~TgvD----~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~-~e~---~~~~i~-~Gi~ 141 (192)
+-..+-|.| ++=+- |+ |.++++-+.+ ++|.|+=||+-. + ++- ++.+++ .|.+
T Consensus 207 RiAaELGADs~~tivK~~-------y~--------e~f~~Vv~a~---~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~ 268 (307)
T 3fok_A 207 AIAAGLGNDSSYTWMKLP-------VV--------EEMERVMEST---TMPTLLLGGEGGNDPDATFASWEHALTLPGVR 268 (307)
T ss_dssp HHHHTCSSCCSSEEEEEE-------CC--------TTHHHHGGGC---SSCEEEECCSCC--CHHHHHHHHHHTTSTTEE
T ss_pred HHHHHhCCCcCCCEEEeC-------Cc--------HHHHHHHHhC---CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCe
Confidence 445567999 77663 43 2245565555 699999999986 3 333 345777 5877
Q ss_pred EeecchHHHHHHHHHhcCCCCChHHHHHHHH
Q 029540 142 KFNVNTEVRKAYMDSLSRPKSDLIHLMASAK 172 (192)
Q Consensus 142 KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~ 172 (192)
=+=++-.+. +.|..||..+++...
T Consensus 269 Gv~vGRNIf-------Q~~~~dp~~~v~al~ 292 (307)
T 3fok_A 269 GLTVGRTLL-------YPQDGDVAAAVDTAA 292 (307)
T ss_dssp EEEECTTTS-------SCSSSCHHHHHHHHH
T ss_pred EEeechhhc-------cCCCCCHHHHHHHHH
Confidence 776664332 123456766554433
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=92.70 E-value=1.4 Score=38.36 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=76.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h-
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T- 77 (192)
++++.||+.|-+...+-++++.++..+.|.+..-. ++.+=.+. + ..| ++++|.+|+++ .
T Consensus 149 ~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~-d~~l~vDa------n---------~~~-~~~~a~~~~~~l~~~~ 211 (382)
T 2gdq_A 149 AQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGS-SITMILDA------N---------QSY-DAAAAFKWERYFSEWT 211 (382)
T ss_dssp HHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCT-TSEEEEEC------T---------TCC-CHHHHHTTHHHHTTCS
T ss_pred HHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCC-CCEEEEEC------C---------CCC-CHHHHHHHHHHHhhcc
Confidence 56788999999988765778888777777665521 22222110 1 123 48899888765 4
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+++++-= + -|.-|++-+++|++.+ ++|++.=+ |=.+.++++++++.| +.=||+..
T Consensus 212 ~i~~iEq----------P-~~~~d~~~~~~l~~~~---~iPIa~dE-~~~~~~~~~~~i~~~~~d~v~ik~ 267 (382)
T 2gdq_A 212 NIGWLEE----------P-LPFDQPQDYAMLRSRL---SVPVAGGE-NMKGPAQYVPLLSQRCLDIIQPDV 267 (382)
T ss_dssp CEEEEEC----------C-SCSSCHHHHHHHHTTC---SSCEEECT-TCCSHHHHHHHHHTTCCSEECCCT
T ss_pred CCeEEEC----------C-CCcccHHHHHHHHhhC---CCCEEecC-CcCCHHHHHHHHHcCCCCEEecCc
Confidence 7776631 1 2345899999999887 69988754 446678899999887 56667643
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.27 Score=41.15 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=77.9
Q ss_pred hhhhcCCCEeEeeCCCCCH--HHHHHHHHHHHHHHHhCCCeEEEec------c-ccccCCCCCccccccccCCCHH-HHH
Q 029540 2 EAIVLGFDSLMVDGSHLPF--KDNISHTKYISFLAHSKGMLVEAEL------G-RLSGTEDGLTVEDYEAKLTDVN-QAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~--eeNi~~Tk~vv~~Ah~~gv~VEaEl------G-~i~g~e~~~~~~~~~~~~T~pe-ea~ 71 (192)
+.+ +|.+-|.++...+.- .-+-...+++++...+..+.|-... | .|.. . + +. +..-.+|. +..
T Consensus 92 ~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~-~-g---w~-~~t~~~~~~e~a 164 (260)
T 2agk_A 92 EWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAM-N-K---WQ-TLTDLELNADTF 164 (260)
T ss_dssp HHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEE-T-T---TT-EEEEEEESHHHH
T ss_pred HHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEE-c-C---Cc-cccCccHHHHHH
Confidence 346 888888888877753 0003444555554432223332222 1 2211 0 0 00 00012444 555
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh----ccCCccEEeecCCCCCHHHHHHHHhc--CCeEeec
Q 029540 72 EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS----SKKGVLLVLHGASGLSAELIKGCIER--GVRKFNV 145 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~----~~~~iPLVlHGgSG~~~e~~~~~i~~--Gi~KINi 145 (192)
+.+++. ++.+.+-==+..|.|.+ | |++++++|.+.+ + +|+.--||-+.+++ ++++.+. |+..+=+
T Consensus 165 ~~~~~~-a~~il~t~i~~dG~~~G--~--d~eli~~l~~~~~~~~~---iPVIasGGi~s~ed-~~~l~~~~~G~~gviv 235 (260)
T 2agk_A 165 RELRKY-TNEFLIHAADVEGLCGG--I--DELLVSKLFEWTKDYDD---LKIVYAGGAKSVDD-LKLVDELSHGKVDLTF 235 (260)
T ss_dssp HHHTTT-CSEEEEEC-------CC--C--CHHHHHHHHHHHTTCSS---CEEEEESCCCCTHH-HHHHHHHHTTCEEEEC
T ss_pred HHHHHh-cCEEEEEeeccccCcCC--C--CHHHHHHHHHhhcccCC---ceEEEeCCCCCHHH-HHHHHHhcCCCCEEEe
Confidence 556666 99998854455566643 4 999999999887 5 99999999998876 7888877 9999999
Q ss_pred chHH
Q 029540 146 NTEV 149 (192)
Q Consensus 146 ~T~l 149 (192)
++.+
T Consensus 236 g~al 239 (260)
T 2agk_A 236 GSSL 239 (260)
T ss_dssp CTTB
T ss_pred eCCH
Confidence 9985
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=92.60 E-value=2.9 Score=36.58 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=73.7
Q ss_pred hhhhcCCCEeEeeCC----C--------CCHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccCCC
Q 029540 2 EAIVLGFDSLMVDGS----H--------LPFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKLTD 66 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S----~--------l~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~ 66 (192)
++++.||+.|-+... . +..+.+++...++++..++ . ++.+=.+ .+ ..| +
T Consensus 159 ~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vD------an---------~~~-~ 222 (410)
T 2qq6_A 159 EAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAID------MH---------GRF-D 222 (410)
T ss_dssp HHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEE------CT---------TCC-C
T ss_pred HHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEE------CC---------CCC-C
Confidence 567889999998862 1 1112445555555555443 1 2222111 00 123 6
Q ss_pred HHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeE
Q 029540 67 VNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRK 142 (192)
Q Consensus 67 peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~K 142 (192)
+++|.+|+++ -+++++--. -|.-|++-+++|++.+ ++|++. |.+=...++++++++.| +.=
T Consensus 223 ~~~a~~~~~~l~~~~i~~iEeP-----------~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~~~d~ 287 (410)
T 2qq6_A 223 IPSSIRFARAMEPFGLLWLEEP-----------TPPENLDALAEVRRST---STPICA-GENVYTRFDFRELFAKRAVDY 287 (410)
T ss_dssp HHHHHHHHHHHGGGCCSEEECC-----------SCTTCHHHHHHHHTTC---SSCEEE-CTTCCSHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHHHhhcCCCeEECC-----------CChhhHHHHHHHHhhC---CCCEEe-CCCcCCHHHHHHHHHcCCCCE
Confidence 8899988654 578876521 2445899999999887 699888 55556788999999887 666
Q ss_pred eecchHH
Q 029540 143 FNVNTEV 149 (192)
Q Consensus 143 INi~T~l 149 (192)
||+....
T Consensus 288 v~ik~~~ 294 (410)
T 2qq6_A 288 VMPDVAK 294 (410)
T ss_dssp ECCBHHH
T ss_pred EecCccc
Confidence 7775433
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.58 E-value=1.7 Score=37.68 Aligned_cols=113 Identities=9% Similarity=0.043 Sum_probs=72.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
++.+.||+.|-+-... +++..++..+.|.+.+- ++.+= | ..+ ..| ++++|.+|++ +.|
T Consensus 157 ~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g--d~~l~-----v-D~n---------~~~-~~~~a~~~~~~l~~~~ 217 (384)
T 2pgw_A 157 VGHAQGERVFYLKVGR-GEKLDLEITAAVRGEIG--DARLR-----L-DAN---------EGW-SVHDAINMCRKLEKYD 217 (384)
T ss_dssp HHHHTTCCEEEEECCS-CHHHHHHHHHHHHTTST--TCEEE-----E-ECT---------TCC-CHHHHHHHHHHHGGGC
T ss_pred HHHHcCCCEEEECcCC-CHHHHHHHHHHHHHHcC--CcEEE-----E-ecC---------CCC-CHHHHHHHHHHHHhcC
Confidence 5678899999987654 55555544444433221 22221 1 111 123 5788888854 468
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
+|++--. -|.-|++.+++|++.+ ++|++.=+ +=.+.++++++++.| +.=||+...
T Consensus 218 i~~iEqP-----------~~~~~~~~~~~l~~~~---~iPI~~de-~i~~~~~~~~~i~~~~~d~v~ik~~ 273 (384)
T 2pgw_A 218 IEFIEQP-----------TVSWSIPAMAHVREKV---GIPIVADQ-AAFTLYDVYEICRQRAADMICIGPR 273 (384)
T ss_dssp CSEEECC-----------SCTTCHHHHHHHHHHC---SSCEEEST-TCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred CCEEeCC-----------CChhhHHHHHHHHhhC---CCCEEEeC-CcCCHHHHHHHHHcCCCCEEEEcch
Confidence 9987511 2445899999999888 69988644 455788999999887 666777543
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=92.55 E-value=1 Score=42.10 Aligned_cols=134 Identities=15% Similarity=0.176 Sum_probs=87.6
Q ss_pred hhhhcCCCEeEeeCCC---------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 2 EAIVLGFDSLMVDGSH---------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~---------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
+|.++||+-|-|-+.+ =++|...+...||++-.++. +..|-.=|.- .+ ...
T Consensus 164 ~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~---~~-~~~- 238 (690)
T 3k30_A 164 RSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITV---EE-EID- 238 (690)
T ss_dssp HHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEEC---CC-CST-
T ss_pred HHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECc---cc-cCC-
Confidence 6889999999996643 24788888999999888753 3444443322 11 110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCC---CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH
Q 029540 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPS---SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL 131 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~---~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~ 131 (192)
.-+ +++++.+|+ ++ ++|+|-++.|+.++.... ..+..+.+..++|++.+ ++|++.=|+-- +.++
T Consensus 239 ----~g~-~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~pvi~~G~i~-~~~~ 308 (690)
T 3k30_A 239 ----GGI-TREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT---TKPVVGVGRFT-SPDA 308 (690)
T ss_dssp ----TSC-CHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC---SSCEEECSCCC-CHHH
T ss_pred ----CCC-CHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc---CCeEEEeCCCC-CHHH
Confidence 012 235555554 44 799999999985432111 01345667788888887 69988877543 3567
Q ss_pred HHHHHhcC-CeEeecchHHH
Q 029540 132 IKGCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 132 ~~~~i~~G-i~KINi~T~l~ 150 (192)
..++++.| +.-|-++..+.
T Consensus 309 a~~~l~~g~~d~v~~gR~~~ 328 (690)
T 3k30_A 309 MVRQIKAGILDLIGAARPSI 328 (690)
T ss_dssp HHHHHHTTSCSEEEESHHHH
T ss_pred HHHHHHCCCcceEEEcHHhH
Confidence 88888887 77788887763
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=2.2 Score=37.51 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=73.2
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCC-----------------------CC--CCCCCCHHHHHHHHhhhccCCccEE
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKY-----------------------PS--SGPNLKLDLLKDLHALSSKKGVLLV 120 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y-----------------------~~--~~p~ld~~~L~~I~~~~~~~~iPLV 120 (192)
+|++|+. +.+.|+|.+.|+- ||.. .. +.|. ...|.++++.++ ++|+.
T Consensus 200 s~~~A~~-l~~aGad~I~V~g---~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt--~~~l~~v~~~~~--~ipvi 271 (368)
T 3vkj_A 200 SMETAKL-LYSYGIKNFDTSG---QGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPT--AASIMEVRYSVP--DSFLV 271 (368)
T ss_dssp CHHHHHH-HHHTTCCEEECCC---BTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBH--HHHHHHHHHHST--TCEEE
T ss_pred CHHHHHH-HHhCCCCEEEEeC---CCCCcccchhhhhcccccccchhhccccccccccH--HHHHHHHHHHcC--CCcEE
Confidence 5888877 5589999988753 1321 00 1121 245677777763 59999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.=||-..+ .++.+++.+|..=+.++|.+..+.... + .-.....+.+.+.++..|..+|..
T Consensus 272 a~GGI~~~-~d~~kal~lGA~~v~ig~~~l~~~~~G-------~-~~v~~~l~~l~~eL~~~m~~~G~~ 331 (368)
T 3vkj_A 272 GSGGIRSG-LDAAKAIALGADIAGMALPVLKSAIEG-------K-ESLEQFFRKIIFELKAAMMLTGSK 331 (368)
T ss_dssp EESSCCSH-HHHHHHHHHTCSEEEECHHHHHHHHHC-------H-HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCH-HHHHHHHHcCCCEEEEcHHHHHHHhcC-------h-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987665 558889999999999999998765321 1 233445567777778888887764
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.15 Score=42.80 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEe----cCc-----------------CCCCCCCCC-------CCCCHHHHHHHHhhhccC
Q 029540 64 LTDVNQAEEFIDETDIDALAVC----IGN-----------------VHGKYPSSG-------PNLKLDLLKDLHALSSKK 115 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAva----iGt-----------------~HG~y~~~~-------p~ld~~~L~~I~~~~~~~ 115 (192)
.++|+++.++ .+.|+|.+.+. +|. .|| |.+.. ...+++.++++++.+
T Consensus 132 v~~~~~~~~a-~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g-~t~~~~~~~~~~~~~~~~~i~~l~~~~--- 206 (297)
T 2zbt_A 132 ARNLGEALRR-IAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQS-LREDELMAYAKEIGAPFELVKWVHDHG--- 206 (297)
T ss_dssp ESSHHHHHHH-HHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHH-SCGGGHHHHHHHHTCCHHHHHHHHHHS---
T ss_pred cCCHHHHHHH-HHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCC-cCCCCchhhhhcchhhHHHHHHHHHhc---
Confidence 4799999986 58899998774 111 233 32211 235788899998876
Q ss_pred CccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 116 GVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 116 ~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++|+++=...|+ +.++++++.+.|+.=+=++|.+.
T Consensus 207 ~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~ 242 (297)
T 2zbt_A 207 RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIF 242 (297)
T ss_dssp SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGG
T ss_pred CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHh
Confidence 689873344488 89999999999999999999885
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=3 Score=36.45 Aligned_cols=114 Identities=9% Similarity=-0.039 Sum_probs=77.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++.||+.|=+-...-++++.++..+.|.+..- ...+.|.+ + ..| ++++|.+|+++ .
T Consensus 185 ~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDa--------n---------~~~-~~~~ai~~~~~l~~~ 246 (398)
T 2pp0_A 185 ISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDA--------N---------QQW-DRETAIRMGRKMEQF 246 (398)
T ss_dssp HHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEEC--------T---------TCS-CHHHHHHHHHHHGGG
T ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEEC--------C---------CCC-CHHHHHHHHHHHHHc
Confidence 5678899999998776677877777777666542 12222211 1 123 58899888655 5
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
+++++-- + -|.-|++-+++|++.+ ++|++.-+ |=...++++++++.| +.=||+...
T Consensus 247 ~i~~iEq----------P-~~~~d~~~~~~l~~~~---~iPIa~dE-~~~~~~~~~~~i~~~~~d~v~ik~~ 303 (398)
T 2pp0_A 247 NLIWIEE----------P-LDAYDIEGHAQLAAAL---DTPIATGE-MLTSFREHEQLILGNASDFVQPDAP 303 (398)
T ss_dssp TCSCEEC----------C-SCTTCHHHHHHHHHHC---SSCEEECT-TCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred CCceeeC----------C-CChhhHHHHHHHHhhC---CCCEEecC-CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 7887641 1 2345899999999887 69988755 455778999999888 566777543
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.12 Score=47.01 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=53.7
Q ss_pred HHHHHHhhhhCC-cEEEEecCcC--CCCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecCCCCC-------------
Q 029540 68 NQAEEFIDETDI-DALAVCIGNV--HGKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGASGLS------------- 128 (192)
Q Consensus 68 eea~~Fv~~Tgv-D~LAvaiGt~--HG~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGgSG~~------------- 128 (192)
+-+.+..++.+- =.|.++-+.+ +|.|.+-.|..=...++++.+.. ++| ++|||-.|-|
T Consensus 35 ~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~---~vPv~pV~LhlDHg~~~~w~~~~~~~am~ 111 (450)
T 3txv_A 35 EAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRI---EFPREKILLGGDHLGPNPWKHLPADEAMA 111 (450)
T ss_dssp HHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHT---TCCGGGEEEEEEEESSGGGTTSCHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHc---CcCcccEEEECCCCCCcccccccHHHHHH
Confidence 345555566653 3566676654 68886411221123445565555 576 7999999988
Q ss_pred --HHHHHHHHhcCCeEeecchHH
Q 029540 129 --AELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 129 --~e~~~~~i~~Gi~KINi~T~l 149 (192)
.+.+++||+.|..||-|++..
T Consensus 112 ~a~e~i~~aI~AGFtSVMiD~S~ 134 (450)
T 3txv_A 112 KAEAMITAYAKAGFTKLHLDTSM 134 (450)
T ss_dssp HHHHHHHHHHTTTCCEEEECCCB
T ss_pred HHHHHHHHHHHcCCCEEEECCCC
Confidence 899999999999999998755
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=92.28 E-value=2.8 Score=35.46 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=89.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-.+|-+.|.+-++.|+.++ .+++.++|+.+|..|=.|+ .|.+|.++-+ +.|.+.
T Consensus 121 eAr~~GADaILLI~a~L~~~~----l~~l~~~A~~lGl~~LvEV-------------------h~~~El~rAl-~~~a~i 176 (258)
T 4a29_A 121 DAYNLGADTVLLIVKILTERE----LESLLEYARSYGMEPLILI-------------------NDENDLDIAL-RIGARF 176 (258)
T ss_dssp HHHHHTCSEEEEEGGGSCHHH----HHHHHHHHHHTTCCCEEEE-------------------SSHHHHHHHH-HTTCSE
T ss_pred HHHHcCCCeeehHHhhcCHHH----HHHHHHHHHHHhHHHHHhc-------------------chHHHHHHHh-cCCCcE
Confidence 456689999999999999764 6799999999987765552 3446665544 579999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+-|.--|.| .-..|++...++...+.. ++++|- -||+ +.++++++.++|+.=+=|++.|..
T Consensus 177 IGINNRnL~------tf~vdl~~t~~L~~~ip~-~~~~Vs--ESGI~t~~dv~~l~~~G~~a~LVGealmr 238 (258)
T 4a29_A 177 IGIMSRDFE------TGEINKENQRKLISMIPS-NVVKVA--KLGISERNEIEELRKLGVNAFLISSSLMR 238 (258)
T ss_dssp EEECSBCTT------TCCBCHHHHHHHHTTSCT-TSEEEE--EESSCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred EEEeCCCcc------ccccCHHHHHHHHhhCCC-CCEEEE--cCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 988776664 366789998999887642 465664 4555 567799999999999999999864
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=92.15 E-value=2.6 Score=36.72 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=74.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++.||+.|-+....-+.++.++..+.|.+..- ...+.|.+ + ..| ++++|.+|+++ .
T Consensus 159 ~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDa--------n---------~~~-~~~~a~~~~~~l~~~ 220 (391)
T 2qgy_A 159 KFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDL--------A---------VPE-DLDQTKSFLKEVSSF 220 (391)
T ss_dssp HHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEEC--------C---------CCS-CHHHHHHHHHHHGGG
T ss_pred HHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEc--------C---------CCC-CHHHHHHHHHHHHhc
Confidence 5678899999988653336777776666665442 12222211 1 123 57888888654 5
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
|++++--. -|.-|++-+++|++.+ ++|++.=+ |=.+.++++++++.| +.=||+.
T Consensus 221 ~i~~iEqP-----------~~~~d~~~~~~l~~~~---~iPIa~dE-~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 221 NPYWIEEP-----------VDGENISLLTEIKNTF---NMKVVTGE-KQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp CCSEEECS-----------SCTTCHHHHHHHHHHC---SSCEEECT-TCCSHHHHHHHHHTTCCSEECCB
T ss_pred CCCeEeCC-----------CChhhHHHHHHHHhhC---CCCEEEcC-CcCCHHHHHHHHHcCCCCEEEEC
Confidence 88887411 1335899999999887 69988755 445678899999887 5566764
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.24 Score=39.33 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.+..++.+.+.+.|+|++=+=+ .-|.+.. .-...++.+++|++.+ +.|+.+|+..--+++.++.+.+.|+.-|
T Consensus 15 ~~~~~~~~~~~~~~G~~~i~~~~--~dg~~~~-~~~~g~~~i~~i~~~~---~~~~~v~l~v~d~~~~i~~~~~~gad~v 88 (220)
T 2fli_A 15 YANFASELARIEETDAEYVHIDI--MDGQFVP-NISFGADVVASMRKHS---KLVFDCHLMVVDPERYVEAFAQAGADIM 88 (220)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEEE--EBSSSSS-CBCBCHHHHHHHHTTC---CSEEEEEEESSSGGGGHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--ecCCCCC-ccccCHHHHHHHHHhC---CCCEEEEEeecCHHHHHHHHHHcCCCEE
Confidence 46677888888899999864433 3343332 1223388899998876 5899999987777777899999999999
Q ss_pred ecch
Q 029540 144 NVNT 147 (192)
Q Consensus 144 Ni~T 147 (192)
.+.+
T Consensus 89 ~vh~ 92 (220)
T 2fli_A 89 TIHT 92 (220)
T ss_dssp EEEG
T ss_pred EEcc
Confidence 8854
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=92.05 E-value=0.16 Score=41.20 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=47.7
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++|.+.+ +++|+.+.+ .+.+ ++.++++++.+. ++|+++=|| +..+++.++++.|+.=+=++|.+.
T Consensus 138 ~~d~vl~--~sv~pg~~g--~~~~~~~l~~i~~~~~~~~--~~pi~v~GG--I~~~ni~~~~~aGaD~vvvGsai~ 205 (228)
T 1h1y_A 138 PVELVLV--MTVEPGFGG--QKFMPEMMEKVRALRKKYP--SLDIEVDGG--LGPSTIDVAASAGANCIVAGSSIF 205 (228)
T ss_dssp CCSEEEE--ESSCTTCSS--CCCCGGGHHHHHHHHHHCT--TSEEEEESS--CSTTTHHHHHHHTCCEEEESHHHH
T ss_pred CCCEEEE--EeecCCCCc--ccCCHHHHHHHHHHHHhcC--CCCEEEECC--cCHHHHHHHHHcCCCEEEECHHHH
Confidence 7897764 777755442 3344 455566666552 599999995 555899999999999999999885
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=92.04 E-value=2.5 Score=32.93 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 101 KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 101 d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.++.++++++... ++|++-=||-. .+++.++.+.|..=+=++|.+..
T Consensus 137 g~~~~~~l~~~~~--~~pvia~GGI~--~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 137 GPQFVKAMKGPFP--NVKFVPTGGVN--LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp HHHHHHHHHTTCT--TCEEEEBSSCC--TTTHHHHHHHTCSCEEECHHHHC
T ss_pred CHHHHHHHHHhCC--CCcEEEcCCCC--HHHHHHHHHCCCCEEEECccccC
Confidence 4566677766542 59999988664 57899999999999999999863
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.36 Score=42.56 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH----HHHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL----DLLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~----~~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~G 139 (192)
++++++.+.++..|.|+|++-+-...-...+ .-.-+| +.|++|++.+ ++|+++=| |.|.+.++.+++.+.|
T Consensus 155 ~~~e~~~~~ve~~~adal~ihln~~qe~~~p-~Gd~~~~~~~~~I~~l~~~~---~~PVivK~vg~g~s~e~A~~l~~aG 230 (365)
T 3sr7_A 155 KPYQAGLQAVRDLQPLFLQVHINLMQELLMP-EGEREFRSWKKHLSDYAKKL---QLPFILKEVGFGMDVKTIQTAIDLG 230 (365)
T ss_dssp SCHHHHHHHHHHHCCSCEEEEECHHHHHTSS-SSCCCCHHHHHHHHHHHHHC---CSCEEEEECSSCCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcCCCEEEEeccccccccCC-CCCCcHHHHHHHHHHHHHhh---CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999887543111111 122345 6777887776 79999985 4568999999999999
Q ss_pred CeEeec
Q 029540 140 VRKFNV 145 (192)
Q Consensus 140 i~KINi 145 (192)
+.=|-+
T Consensus 231 ad~I~V 236 (365)
T 3sr7_A 231 VKTVDI 236 (365)
T ss_dssp CCEEEC
T ss_pred CCEEEE
Confidence 988866
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=91.66 E-value=2.2 Score=36.94 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=71.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh--CC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET--DI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T--gv 79 (192)
++++.||+.|-+...+-++++.++..+.|.+..-. ++.+=.+ .+ ..+ ++++|.+|+++. ++
T Consensus 155 ~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~-~~~l~vD------an---------~~~-~~~~a~~~~~~l~~~i 217 (378)
T 2qdd_A 155 EAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPD-GHRVTFD------VN---------RAW-TPAIAVEVLNSVRARD 217 (378)
T ss_dssp HHHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCT-TCEEEEE------CT---------TCC-CHHHHHHHHTSCCCCC
T ss_pred HHHHHhhhheeecCCCCChHHHHHHHHHHHHHhCC-CCEEEEe------CC---------CCC-CHHHHHHHHHHhCCCc
Confidence 46788999999987664566666655555443211 2222111 00 123 589999998765 33
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
++ . .|--|++-+++|++.+ ++|++. +.|=.+.++++++++.| +.=||+...
T Consensus 218 -~i------------E-qP~~d~~~~~~l~~~~---~iPI~~-dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (378)
T 2qdd_A 218 -WI------------E-QPCQTLDQCAHVARRV---ANPIML-DECLHEFSDHLAAWSRGACEGVKIKPN 269 (378)
T ss_dssp -EE------------E-CCSSSHHHHHHHHTTC---CSCEEE-CTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred -EE------------E-cCCCCHHHHHHHHHhC---CCCEEE-CCCcCCHHHHHHHHHhCCCCEEEeccc
Confidence 32 1 1322999999999887 699888 45555688899999877 666777543
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=91.59 E-value=3 Score=36.28 Aligned_cols=117 Identities=16% Similarity=0.052 Sum_probs=73.3
Q ss_pred hhhhcCCCEeEeeCC-----CC---------CHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccC
Q 029540 2 EAIVLGFDSLMVDGS-----HL---------PFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKL 64 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l---------~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~ 64 (192)
++.+.||+.|-+... .. +.+.+++...++++..++ . ++.+=.+. + ..
T Consensus 156 ~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDa------n---------~~- 219 (403)
T 2ox4_A 156 KAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVEN------H---------GH- 219 (403)
T ss_dssp HHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEEC------T---------TC-
T ss_pred HHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEC------C---------CC-
Confidence 467889999998742 11 113455555555555554 1 22222110 0 12
Q ss_pred CCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-C
Q 029540 65 TDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-V 140 (192)
Q Consensus 65 T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i 140 (192)
-++++|.+|+++ -+++++-- + -|.-|++-+++|++.+ ++|++.= .+=.+.++++++++.| +
T Consensus 220 ~~~~~ai~~~~~l~~~~i~~iE~----------P-~~~~d~~~~~~l~~~~---~iPIa~d-E~~~~~~~~~~~i~~~~~ 284 (403)
T 2ox4_A 220 TDLVSAIQFAKAIEEFNIFFYEE----------I-NTPLNPRLLKEAKKKI---DIPLASG-ERIYSRWGFLPFLEDRSI 284 (403)
T ss_dssp SCHHHHHHHHHHHGGGCEEEEEC----------C-SCTTSTHHHHHHHHTC---CSCEEEC-TTCCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhhCCCEEeC----------C-CChhhHHHHHHHHHhC---CCCEEec-CCcCCHHHHHHHHHcCCC
Confidence 358899888655 57777641 1 2345889999999887 6999884 4446688999999887 6
Q ss_pred eEeecchHH
Q 029540 141 RKFNVNTEV 149 (192)
Q Consensus 141 ~KINi~T~l 149 (192)
.=||+....
T Consensus 285 d~v~ik~~~ 293 (403)
T 2ox4_A 285 DVIQPDLGT 293 (403)
T ss_dssp SEECCCHHH
T ss_pred CEEecCccc
Confidence 667776443
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.59 E-value=2.1 Score=37.26 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=73.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh-----
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE----- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~----- 76 (192)
++++.||+.|-+...+-++++.++..+.|.+..- -++.+-.+. + ..| ++++|.+|+++
T Consensus 155 ~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G-~~~~l~vDa------n---------~~~-~~~~a~~~~~~l~~~g 217 (389)
T 2oz8_A 155 HAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVP-AGSKVMIDP------N---------EAW-TSKEALTKLVAIREAG 217 (389)
T ss_dssp HHHHTTCCEEEEECCCSSHHHHHHHHHHHHTTSC-TTCEEEEEC------T---------TCB-CHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCEEEEccCCCCHHHHHHHHHHHHHhhC-CCCeEEEEC------C---------CCC-CHHHHHHHHHHHHhcC
Confidence 4678899999998876567766665555544321 122222110 1 124 48889888654
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
-+++++- .+ -|.-|++-+++|++.+. ++|++.-+.- ..++++++++.| +.=||+.
T Consensus 218 ~~i~~iE----------qP-~~~~~~~~~~~l~~~~~--~iPIa~dE~~--~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 218 HDLLWVE----------DP-ILRHDHDGLRTLRHAVT--WTQINSGEYL--DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp CCCSEEE----------SC-BCTTCHHHHHHHHHHCC--SSEEEECTTC--CHHHHHHHHHTTCCSEEEEC
T ss_pred CCceEEe----------CC-CCCcCHHHHHHHHhhCC--CCCEEeCCCC--CHHHHHHHHHcCCCCEEEEC
Confidence 4566552 11 13348899999998762 4999887766 778899999888 6678886
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.14 Score=46.16 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCHHHHHHH---hhhhCC-cEEEEecCcCC--CCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecCCCCCH------
Q 029540 65 TDVNQAEEF---IDETDI-DALAVCIGNVH--GKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGASGLSA------ 129 (192)
Q Consensus 65 T~peea~~F---v~~Tgv-D~LAvaiGt~H--G~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGgSG~~~------ 129 (192)
.+++-++-- .++++- =.|.++-|.+- |.|.+..|..=...++.+.+.. ++| ++||+-.|-|.
T Consensus 22 ~n~e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~---~vP~~~VaLHlDHg~~~~w~~~~ 98 (420)
T 2fiq_A 22 AHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKV---GFARERIILGGDHLGPNCWQQEN 98 (420)
T ss_dssp CCHHHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHH---TCCGGGEEEEEEEESSGGGTTSB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHc---CcCcceEEEECCCCCCccccccc
Confidence 445544444 445543 35666666653 7786411322234445555555 688 99999999998
Q ss_pred ---------HHHHHHHhcCCeEeecchHH
Q 029540 130 ---------ELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 130 ---------e~~~~~i~~Gi~KINi~T~l 149 (192)
+.+++||+.|..+|-|+...
T Consensus 99 ~~~am~~a~e~i~~aI~aGFtSVMiD~S~ 127 (420)
T 2fiq_A 99 VDAAMEKSVELVKAYVRAGFSKIHLDASM 127 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred hhhhhhhHHHHHHHHHHhCCCEEEECCCC
Confidence 99999999999999998653
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.49 E-value=2.8 Score=36.82 Aligned_cols=111 Identities=11% Similarity=0.113 Sum_probs=71.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCC---------------CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPS---------------SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA 129 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~---------------~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~ 129 (192)
.+|++|+. +.+.|+|++.|+-. |...- .+..-.++.|.+++.... ++|+..=||--.+.
T Consensus 218 ~s~e~A~~-l~~aGad~I~V~g~---GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~--~ipvia~GGI~~g~ 291 (365)
T 3sr7_A 218 MDVKTIQT-AIDLGVKTVDISGR---GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMD--KVEILASGGIRHPL 291 (365)
T ss_dssp CCHHHHHH-HHHHTCCEEECCCB---C--------------CGGGTTCSCBHHHHHHHHGGGTT--TSEEEECSSCCSHH
T ss_pred CCHHHHHH-HHHcCCCEEEEeCC---CCcccchhhccccccccccccccccHHHHHHHHHHhcC--CCeEEEeCCCCCHH
Confidence 57888877 55889999987532 32110 000011245555544321 59999999887665
Q ss_pred HHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 130 ELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 130 e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
| +.|++.+|..=|.++|.+..+... . . ..-+....+.+++.++..|...|..
T Consensus 292 D-v~KaLalGAdaV~ig~~~l~a~~~---~-G---~~~v~~~l~~l~~eL~~~m~~~G~~ 343 (365)
T 3sr7_A 292 D-IIKALVLGAKAVGLSRTMLELVEQ---H-S---VHEVIAIVNGWKEDLRLIMCALNCQ 343 (365)
T ss_dssp H-HHHHHHHTCSEEEESHHHHHHHHH---S-C---HHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred H-HHHHHHcCCCEEEECHHHHHHHHh---c-C---hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5 888999999999999998776542 1 1 1223344567777888888888864
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=3.7 Score=35.88 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=78.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCe-EEEeccccccCCCCCccccccccCCCHHHHHHHhhh---
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE--- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~--- 76 (192)
++++.||+.+=+.-.. +.++.++..+.|.+..-. ..+. |.+ + ..+ ++++|.+|+++
T Consensus 152 ~~~~~G~~~~KiKvG~-~~~~d~~~v~avR~a~g~~~~l~~vDa--------n---------~~~-~~~~A~~~~~~l~~ 212 (391)
T 3gd6_A 152 QKLEQGFDVFRLYVGK-NLDADEEFLSRVKEEFGSRVRIKSYDF--------S---------HLL-NWKDAHRAIKRLTK 212 (391)
T ss_dssp HHHHTTCCEEEEECSS-CHHHHHHHHHHHHHHHGGGCEEEEEEC--------T---------TCS-CHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEeeCC-CHHHHHHHHHHHHHHcCCCCcEEEecC--------C---------CCc-CHHHHHHHHHHHHh
Confidence 4567899999888655 778888888777665532 2222 221 1 123 68899988654
Q ss_pred hCC--cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 77 TDI--DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 77 Tgv--D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.++ +++- -+ -|.-|++-+++|++.+ ++|+ |.|=...++++++++.| +.=||+....
T Consensus 213 ~~i~~~~iE---------qP--~~~~d~~~~~~l~~~~---~iPI---dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 271 (391)
T 3gd6_A 213 YDLGLEMIE---------SP--APRNDFDGLYQLRLKT---DYPI---SEHVWSFKQQQEMIKKDAIDIFNISPVF 271 (391)
T ss_dssp CCSSCCEEE---------CC--SCTTCHHHHHHHHHHC---SSCE---EEECCCHHHHHHHHHHTCCSEEEECHHH
T ss_pred cCCCcceec---------CC--CChhhHHHHHHHHHHc---CCCc---CCCCCCHHHHHHHHHcCCCCEEEECchh
Confidence 567 6664 11 1334899999999887 6998 99999999999999877 6678887544
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=91.28 E-value=4.4 Score=34.67 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=77.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---h--
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---E-- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~-- 76 (192)
++++.||+.+=+-..+-++++.++..+.+.+..-. ++.+=.+ .+ ..| ++++|.+|++ +
T Consensus 150 ~~~~~Gf~~iKik~g~~~~~~d~~~v~avr~a~g~-~~~l~vD------an---------~~~-~~~~a~~~~~~l~~~~ 212 (366)
T 1tkk_A 150 NYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGS-AVKLRLD------AN---------QGW-RPKEAVTAIRKMEDAG 212 (366)
T ss_dssp HHHHHTCCEEEEECCSSCHHHHHHHHHHHHHHHCS-SSEEEEE------CT---------TCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-CCeEEEE------CC---------CCC-CHHHHHHHHHHHhhcC
Confidence 46778999998887655677778777777665421 2222111 01 123 5788888864 4
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.+++++- - + -|.-|++-+++|++.+ ++|++.-+. =.+.++++++++.| +.=||+....
T Consensus 213 ~~i~~iE---------q-P-~~~~d~~~~~~l~~~~---~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~ 271 (366)
T 1tkk_A 213 LGIELVE---------Q-P-VHKDDLAGLKKVTDAT---DTPIMADES-VFTPRQAFEVLQTRSADLINIKLMK 271 (366)
T ss_dssp CCEEEEE---------C-C-SCTTCHHHHHHHHHHC---SSCEEECTT-CCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CCceEEE---------C-C-CCcccHHHHHHHHhhC---CCCEEEcCC-CCCHHHHHHHHHhCCCCEEEeehhh
Confidence 5677663 1 1 2345899999999887 699988655 46778899999876 6778876433
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=2.7 Score=36.10 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=75.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH-HHhhh---h
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE-EFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~-~Fv~~---T 77 (192)
++++.||+.+=+...+ +.++.++..+.|.+..-. ++.+ .+- .+ ..| ++++|. +|+++ .
T Consensus 151 ~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~-~~~l-----~vD-an---------~~~-~~~~a~~~~~~~l~~~ 212 (369)
T 2p8b_A 151 SMIQKGYQSFKMKVGT-NVKEDVKRIEAVRERVGN-DIAI-----RVD-VN---------QGW-KNSANTLTALRSLGHL 212 (369)
T ss_dssp HHHHTTCCEEEEECCS-CHHHHHHHHHHHHHHHCT-TSEE-----EEE-CT---------TTT-BSHHHHHHHHHTSTTS
T ss_pred HHHHcCcCEEEEEeCC-CHHHHHHHHHHHHHHhCC-CCeE-----EEE-CC---------CCC-CHHHHHHHHHHHHHhC
Confidence 5678899999987654 567777777666655421 3333 110 11 123 367888 88655 5
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
|++++- .+ -|.-|++-+++|++.+ ++|++.-+ |=...++++++++.| +.=||+...
T Consensus 213 ~i~~iE----------qP-~~~~d~~~~~~l~~~~---~iPI~~dE-~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (369)
T 2p8b_A 213 NIDWIE----------QP-VIADDIDAMAHIRSKT---DLPLMIDE-GLKSSREMRQIIKLEAADKVNIKLM 269 (369)
T ss_dssp CCSCEE----------CC-BCTTCHHHHHHHHHTC---CSCEEEST-TCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCcEEE----------CC-CCcccHHHHHHHHHhC---CCCEEeCC-CCCCHHHHHHHHHhCCCCEEEeecc
Confidence 777664 11 2345889999999887 69988855 456788899999877 666777543
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=1.4 Score=43.31 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=85.8
Q ss_pred hhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 3 AIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 3 ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+.++||+-|.+..|. ..+..+-+...++++..++. +++|=.=+ . ...++..+..
T Consensus 657 ~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~---~------------~~~~~~~~~a 721 (1025)
T 1gte_A 657 AEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKL---T------------PNVTDIVSIA 721 (1025)
T ss_dssp HHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEE---C------------SCSSCHHHHH
T ss_pred HHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEe---C------------CChHHHHHHH
Confidence 457899999988763 12335667777788777753 44443321 0 0234666766
Q ss_pred HHhhhhCCcEEEEecC----------------------cCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEEeecCCC
Q 029540 72 EFIDETDIDALAVCIG----------------------NVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiG----------------------t~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
+-+++.|+|.+.++-. +.+|.|.+ +.+ -++.+.+|++.+. ++|++.=||-.
T Consensus 722 ~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg--~~~~~~~~~~v~~v~~~~~--~ipvi~~GGI~ 797 (1025)
T 1gte_A 722 RAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSG--TAIRPIALRAVTTIARALP--GFPILATGGID 797 (1025)
T ss_dssp HHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEES--GGGHHHHHHHHHHHHHHST--TCCEEEESSCC
T ss_pred HHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCc--ccchhHHHHHHHHHHHHcC--CCCEEEecCcC
Confidence 6778999999998411 33444443 222 1467888887763 59999999776
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHH
Q 029540 127 LSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.+ ++..+++..|..=|-++|.+..
T Consensus 798 s~-~da~~~l~~Ga~~v~vg~~~l~ 821 (1025)
T 1gte_A 798 SA-ESGLQFLHSGASVLQVCSAVQN 821 (1025)
T ss_dssp SH-HHHHHHHHTTCSEEEESHHHHT
T ss_pred CH-HHHHHHHHcCCCEEEEeecccc
Confidence 54 5578888899999999997764
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.21 Score=43.38 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=75.1
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhc-cC------C
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSS-KK------G 116 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~-~~------~ 116 (192)
.+|++||.+.++++ +.|+|++-+. ...|.+-+ |+ +=+..+++|-+.++ .. +
T Consensus 180 ~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~--D~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~~~~g~~~ 255 (367)
T 1r3s_A 180 WLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLF--ESHAGHLG--PQLFNKFALPYIRDVAKQVKARLREAGLAP 255 (367)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE--ETTGGGSC--HHHHHHHTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe--cCccccCC--HHHHHHHhHHHHHHHHHHHhhhhccccCCC
Confidence 46889999877665 4799976543 33332221 21 23334455555554 22 4
Q ss_pred ccEEeecCCCCCHHHHHHHHhcCCeEeecch--HHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 117 VLLVLHGASGLSAELIKGCIERGVRKFNVNT--EVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 117 iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T--~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
+|+++|.+-. ...+....++|+.-+|+.. ++..+... +.. .+.|+. ++....+.+++.+++.|+.||.
T Consensus 256 ~p~i~~~~G~--~~~l~~l~~~g~d~i~~d~~~dl~~a~~~-~g~~~~l~Gnldp~-~L~gt~e~i~~~v~~~l~~~g~ 330 (367)
T 1r3s_A 256 VPMIIFAKDG--HFALEELAQAGYEVVGLDWTVAPKKAREC-VGKTVTLQGNLDPC-ALYASEEEIGQLVKQMLDDFGP 330 (367)
T ss_dssp CCEEEEETTC--GGGHHHHTTSSCSEEECCTTSCHHHHHHH-HCSSSEEEEEECGG-GGGSCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEcCCc--HHHHHHHHhcCCCEEEeCCCCCHHHHHHH-cCCCeEEEeCCChH-HhcCCHHHHHHHHHHHHHHhCC
Confidence 9999996543 5678888999999999974 33333221 221 123663 4445678999999999999875
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=91.15 E-value=4.7 Score=35.08 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=75.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.|=+.... ++++.++..+.|.+..-. ++.+ .| ..+ ..| ++++|.+|+++ -+
T Consensus 155 ~~~~~Gf~~vKik~g~-~~~~~~e~v~avR~a~g~-d~~l-----~v-Dan---------~~~-~~~~a~~~~~~l~~~~ 216 (397)
T 2qde_A 155 AVLREGFHFVKLKAGG-PLKADIAMVAEVRRAVGD-DVDL-----FI-DIN---------GAW-TYDQALTTIRALEKYN 216 (397)
T ss_dssp HHHHHTCSCEEEECCS-CHHHHHHHHHHHHHHHCT-TSCE-----EE-ECT---------TCC-CHHHHHHHHHHHGGGC
T ss_pred HHHHhhhhheeecccC-CHHHHHHHHHHHHHhhCC-CCEE-----EE-ECC---------CCC-CHHHHHHHHHHHHhCC
Confidence 5678899999987653 667777776666555421 2222 11 001 123 68889888654 57
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
++++-= + -|.-|++-+++|++.+ ++|++.-+ |=.+.++++++++.| +.=||+...
T Consensus 217 i~~iEq----------P-~~~~~~~~~~~l~~~~---~iPIa~dE-~~~~~~~~~~~i~~~~~d~v~ik~~ 272 (397)
T 2qde_A 217 LSKIEQ----------P-LPAWDLDGMARLRGKV---ATPIYADE-SAQELHDLLAIINKGAADGLMIKTQ 272 (397)
T ss_dssp CSCEEC----------C-SCTTCHHHHHHHHTTC---SSCEEEST-TCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCEEEC----------C-CChhhHHHHHHHHhhC---CCCEEEeC-CcCCHHHHHHHHHcCCCCEEEEecc
Confidence 887641 1 2345899999999887 69988755 445678899999877 667787543
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=2.3 Score=37.15 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=48.5
Q ss_pred CHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-Ce
Q 029540 66 DVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VR 141 (192)
Q Consensus 66 ~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~ 141 (192)
++++|.+|+++ -+++++-- + -|.-|++-+++|++.+ ++|++.=+. =.+.++++++++.| +.
T Consensus 230 ~~~~ai~~~~~l~~~~i~~iE~----------P-~~~~~~~~~~~l~~~~---~iPIa~dE~-~~~~~~~~~~i~~~~~d 294 (410)
T 2gl5_A 230 GTNSAIQFAKAIEKYRIFLYEE----------P-IHPLNSDNMQKVSRST---TIPIATGER-SYTRWGYRELLEKQSIA 294 (410)
T ss_dssp CHHHHHHHHHHHGGGCEEEEEC----------S-SCSSCHHHHHHHHHHC---SSCEEECTT-CCTTHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHhcCCCeEEC----------C-CChhhHHHHHHHHhhC---CCCEEecCC-cCCHHHHHHHHHcCCCC
Confidence 58899888755 57777641 1 2445899999999988 699888554 44667899999887 55
Q ss_pred Eeecch
Q 029540 142 KFNVNT 147 (192)
Q Consensus 142 KINi~T 147 (192)
=||+..
T Consensus 295 ~v~ik~ 300 (410)
T 2gl5_A 295 VAQPDL 300 (410)
T ss_dssp EECCCT
T ss_pred EEecCc
Confidence 566643
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=4.9 Score=32.71 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=71.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|-+-|+.-.. ..++++.|+++|+.+= +| . .+|+|+.+ ..+-|+|.
T Consensus 84 ~A~~aGAd~v~~p~~----------d~~v~~~ar~~g~~~i--~G----------------v-~t~~e~~~-A~~~Gad~ 133 (224)
T 1vhc_A 84 LAKSSGADFVVTPGL----------NPKIVKLCQDLNFPIT--PG----------------V-NNPMAIEI-ALEMGISA 133 (224)
T ss_dssp HHHHHTCSEEECSSC----------CHHHHHHHHHTTCCEE--CE----------------E-CSHHHHHH-HHHTTCCE
T ss_pred HHHHCCCCEEEECCC----------CHHHHHHHHHhCCCEE--ec----------------c-CCHHHHHH-HHHCCCCE
Confidence 467777777754321 1456777777765431 11 1 34888877 55789999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
+.+ |+. .+..-++.|++|++.+. ++|++-=| |+..+++...++. |+.=+= ++.+.
T Consensus 134 vk~--------Fpa-~~~gG~~~lk~l~~~~~--~ipvvaiG--GI~~~N~~~~l~agga~~v~-gS~i~ 189 (224)
T 1vhc_A 134 VKF--------FPA-EASGGVKMIKALLGPYA--QLQIMPTG--GIGLHNIRDYLAIPNIVACG-GSWFV 189 (224)
T ss_dssp EEE--------TTT-TTTTHHHHHHHHHTTTT--TCEEEEBS--SCCTTTHHHHHTSTTBCCEE-ECGGG
T ss_pred EEE--------eeC-ccccCHHHHHHHHhhCC--CCeEEEEC--CcCHHHHHHHHhcCCCEEEE-Echhc
Confidence 988 443 12224788999988774 59999888 5667899999998 766666 67664
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=91.05 E-value=1.7 Score=37.82 Aligned_cols=115 Identities=11% Similarity=-0.017 Sum_probs=72.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++.+.||+.|-+-....+.++ ++..+.|.+..-. ++.+=... + ..| ++++|.+|+++ .|
T Consensus 174 ~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~-d~~l~vDa------n---------~~~-~~~~a~~~~~~l~~~~ 235 (388)
T 2nql_A 174 YWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGP-QAKIAADM------H---------WNQ-TPERALELIAEMQPFD 235 (388)
T ss_dssp HHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCT-TSEEEEEC------C---------SCS-CHHHHHHHHHHHGGGC
T ss_pred HHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCC-CCEEEEEC------C---------CCC-CHHHHHHHHHHHhhcC
Confidence 467889999988765423444 5555555544311 22222211 1 123 57888888654 58
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
+|++-- + -|.-|++-+++|++.+ ++|++.-+ |=.+.++++++++.| +.=||+....
T Consensus 236 i~~iEq----------P-~~~~d~~~~~~l~~~~---~iPI~~dE-~~~~~~~~~~~i~~~~~d~v~ik~~~ 292 (388)
T 2nql_A 236 PWFAEA----------P-VWTEDIAGLEKVSKNT---DVPIAVGE-EWRTHWDMRARIERCRIAIVQPEMGH 292 (388)
T ss_dssp CSCEEC----------C-SCTTCHHHHHHHHTSC---CSCEEECT-TCCSHHHHHHHHTTSCCSEECCCHHH
T ss_pred CCEEEC----------C-CChhhHHHHHHHHhhC---CCCEEEeC-CcCCHHHHHHHHHcCCCCEEEecCCC
Confidence 887741 1 1335899999999887 69988654 455778999999887 6667775544
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.19 Score=42.98 Aligned_cols=119 Identities=8% Similarity=0.075 Sum_probs=75.9
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhccC-CccEEee
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSSKK-GVLLVLH 122 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~~~-~iPLVlH 122 (192)
.+|.+||.+.++++ +.|+|.+-+ ....|.+-+ |+ +=+..+++|-+.++.. ++|+++|
T Consensus 162 ~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i--~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~g~~~i~~ 237 (338)
T 2eja_A 162 FMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQI--FDSWVNNLS--LEDYGEYVYPYVNYLISELKDFSDTPVIYF 237 (338)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEE--EETTGGGSC--HHHHHHHTHHHHHHHHHHHHHHCCCCEEEE
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE--ecCccccCC--HHHHHHHhHHHHHHHHHHHhhcCCCCEEEE
Confidence 46899998777665 479996544 444433221 21 2223334555444332 6999999
Q ss_pred cCCCCCHHHHHHHHhcCCeEeecch--HHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 123 GASGLSAELIKGCIERGVRKFNVNT--EVRKAYMDSLS---RPKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 123 GgSG~~~e~~~~~i~~Gi~KINi~T--~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
. -|. ...+....+.|+.-+|++. ++..+...- + ..+.|+ .++....+.+++.+++.|+.+|.
T Consensus 238 ~-~g~-~~~l~~l~~~g~d~~~~d~~~dl~~~~~~~-~~~l~Gn~dp-~~l~gt~e~i~~~v~~~l~~~g~ 304 (338)
T 2eja_A 238 F-RGS-SSFIDLAVDYRADALSVDWSVDIPELFKIY-DKGFQGNLEP-AVLYASEEVIEEKTLGLLRRIPV 304 (338)
T ss_dssp E-SSH-HHHHHHHTTSCCSEEECCTTSCHHHHHHHC-CSEEECCBCG-GGGGSCHHHHHHHHHHHHTTCCC
T ss_pred c-CCc-HHHHHHHHHcCCCEEEeCCCCCHHHHHHhC-CeEEEECCCH-HHhcCCHHHHHHHHHHHHHHhCC
Confidence 6 455 7788899999999999974 444443322 2 134566 34455678999999999998875
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=91.01 E-value=1.7 Score=37.54 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=69.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh----
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---- 77 (192)
++.+.||+.+-+-... +.++.++..+.|.+..- -++.+ .| ..+ ..| ++++|.+|+++.
T Consensus 156 ~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g-~~~~l-----~v-Dan---------~~~-~~~~a~~~~~~l~~~~ 217 (371)
T 2ps2_A 156 KYRAKGYKGQSVKISG-EPVTDAKRITAALANQQ-PDEFF-----IV-DAN---------GKL-SVETALRLLRLLPHGL 217 (371)
T ss_dssp HHHTTTCCEEEEECCS-CHHHHHHHHHHHTTTCC-TTCEE-----EE-ECT---------TBC-CHHHHHHHHHHSCTTC
T ss_pred HHHHhChheEEeecCC-CHHHHHHHHHHHHHhcC-CCCEE-----EE-ECC---------CCc-CHHHHHHHHHHHHhhc
Confidence 4678899999987664 45555544443332211 02222 11 000 123 589999997665
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTE 148 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~ 148 (192)
++ ++- .|--|++-+++|++.+ ++|++.-+. =...++++++++.| +.=||+...
T Consensus 218 ~i-~iE-------------~P~~~~~~~~~l~~~~---~iPI~~dE~-~~~~~~~~~~i~~~~~d~v~ik~~ 271 (371)
T 2ps2_A 218 DF-ALE-------------APCATWRECISLRRKT---DIPIIYDEL-ATNEMSIVKILADDAAEGIDLKIS 271 (371)
T ss_dssp CC-EEE-------------CCBSSHHHHHHHHTTC---CSCEEESTT-CCSHHHHHHHHHHTCCSEEEEEHH
T ss_pred CC-cCc-------------CCcCCHHHHHHHHhhC---CCCEEeCCC-cCCHHHHHHHHHhCCCCEEEechh
Confidence 55 542 1322999999999887 699888664 46778999999887 566777543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.69 Score=38.12 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||-+..+...+-|+|.|-+- +.-+. . ....+++++++|.+.+ .+||-+=||-- +.+++++.++.|+.||
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~---~--~~~~~~~~i~~i~~~~---~~pl~vGGGIr-s~e~~~~~l~~GadkV 101 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAK---D--PSKRQFALIEKLAKEV---SVNLQVGGGIR-SKEEVKALLDCGVKRV 101 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHH---C--GGGCCHHHHHHHHHHC---CSEEEEESSCC-CHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCccc---c--cchhHHHHHHHHHHhc---CCCeEeccccc-cHHHHHHHHHcCCCEE
Confidence 689776666667799988764 22111 1 2345889999998887 69999988654 4578999999999999
Q ss_pred ecchHH
Q 029540 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
.++|..
T Consensus 102 ii~t~a 107 (243)
T 4gj1_A 102 VIGSMA 107 (243)
T ss_dssp EECTTT
T ss_pred EEcccc
Confidence 999965
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=90.88 E-value=0.77 Score=42.39 Aligned_cols=73 Identities=4% Similarity=0.068 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEee
Q 029540 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFN 144 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KIN 144 (192)
.+.|++ +++.|+|.+.+ |+....+ ....|++++++|.+.+ ++|++--||-+.+++ ++++.+ .|+.-+=
T Consensus 455 ~e~a~~-~~~~Ga~~il~-----t~~~~dG~~~G~d~~li~~l~~~~---~iPVIasGGi~s~~d-~~~~~~~~G~~gvi 524 (555)
T 1jvn_A 455 WELTRA-CEALGAGEILL-----NCIDKDGSNSGYDLELIEHVKDAV---KIPVIASSGAGVPEH-FEEAFLKTRADACL 524 (555)
T ss_dssp HHHHHH-HHHTTCCEEEE-----CCGGGTTTCSCCCHHHHHHHHHHC---SSCEEECSCCCSHHH-HHHHHHHSCCSEEE
T ss_pred HHHHHH-HHHcCCCEEEE-----eCCCCCCCCCCCCHHHHHHHHHhC---CccEEEECCCCCHHH-HHHHHHhcCChHHH
Confidence 444444 67899998864 4443321 1224999999999988 699999998887765 788877 8999999
Q ss_pred cchHH
Q 029540 145 VNTEV 149 (192)
Q Consensus 145 i~T~l 149 (192)
+++.+
T Consensus 525 vg~a~ 529 (555)
T 1jvn_A 525 GAGMF 529 (555)
T ss_dssp ESHHH
T ss_pred HHHHH
Confidence 99866
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.61 Score=37.22 Aligned_cols=138 Identities=9% Similarity=0.060 Sum_probs=84.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEE--------Eecc----ccccCCCCCcccc----ccccCC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVE--------AELG----RLSGTEDGLTVED----YEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VE--------aElG----~i~g~e~~~~~~~----~~~~~T 65 (192)
+|+++|.+.|-+=-..++.++-.+.. .++++.+|+.+= .++| +++. ++...... ....-.
T Consensus 21 ~a~~~Gv~~v~lr~k~~~~~~~~~~i---~~l~~~~~~~livnd~~~~A~~~gadgvhl~~-~~~~~~~~~~~~ig~s~~ 96 (210)
T 3ceu_A 21 ALFEEGLDILHLRKPETPAMYSERLL---TLIPEKYHRRIVTHEHFYLKEEFNLMGIHLNA-RNPSEPHDYAGHVSCSCH 96 (210)
T ss_dssp HHHHTTCCEEEECCSSCCHHHHHHHH---HHSCGGGGGGEEESSCTTHHHHTTCSEEECCS-SSCSCCTTCCSEEEEEEC
T ss_pred HHHHCCCCEEEEccCCCCHHHHHHHH---HHHHHHhCCeEEEeCCHHHHHHcCCCEEEECc-cccccccccCCEEEEecC
Confidence 57889999999887777776655543 444555554331 0111 2321 21110000 001125
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCC-CCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHG-KYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG-~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+|+|+.+- + .|+|.+.+ |.+.- .-+++ .+.++++.|+++.+... .++|++.=|| +..++++++++.|..=|
T Consensus 97 t~~e~~~A-~-~GaDyv~~--g~vf~t~sk~~~~~~~g~~~l~~~~~~~~-~~iPviaiGG--I~~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 97 SVEEVKNR-K-HFYDYVFM--SPIYDSISKVNYYSTYTAEELREAQKAKI-IDSKVMALGG--INEDNLLEIKDFGFGGA 169 (210)
T ss_dssp SHHHHHTT-G-GGSSEEEE--CCCC---------CCCCHHHHHHHHHTTC-SSTTEEEESS--CCTTTHHHHHHTTCSEE
T ss_pred CHHHHHHH-h-hCCCEEEE--CCcCCCCCCCCCCCCCCHHHHHHHHHhcC-CCCCEEEECC--CCHHHHHHHHHhCCCEE
Confidence 78888764 4 79998875 33210 00111 14589999999987620 1699999995 45788999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=+.+.+.
T Consensus 170 av~s~i~ 176 (210)
T 3ceu_A 170 VVLGDLW 176 (210)
T ss_dssp EESHHHH
T ss_pred EEhHHhH
Confidence 9999885
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=90.88 E-value=4.8 Score=34.78 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=81.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh----
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---- 77 (192)
++++.||+.+=+.-...++++.++..+.|.+..- ++. | .| ..+ ..+ ++++|.+|+++.
T Consensus 153 ~~~~~G~~~iK~Kvg~~~~~~d~~~v~avr~~~~--~~~----l-~v-DaN---------~~~-~~~~A~~~~~~L~~~~ 214 (365)
T 3ik4_A 153 AILARGIKSIKVKTAGVDVAYDLARLRAIHQAAP--TAP----L-IV-DGN---------CGY-DVERALAFCAACKAES 214 (365)
T ss_dssp HHHHTTCCCEEEECCSSCHHHHHHHHHHHHHHSS--SCC----E-EE-ECT---------TCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEEeCCCCHHHHHHHHHHHHHhCC--CCe----E-EE-ECC---------CCC-CHHHHHHHHHHHhhCC
Confidence 3567899999988877778888888877766542 111 1 11 111 123 588999997665
Q ss_pred -CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHHHHHHH
Q 029540 78 -DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVRKAYMD 155 (192)
Q Consensus 78 -gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~~a~~~ 155 (192)
++.++= -+ -|.-|++-++++++.+ ++|+++ |-|=.+..+++++++.| +.=||+.... -.++.
T Consensus 215 ~~i~~iE----------eP-~~~~d~~~~~~l~~~~---~ipIa~-dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~ 278 (365)
T 3ik4_A 215 IPMVLFE----------QP-LPREDWAGMAQVTAQS---GFAVAA-DESARSAHDVLRIAREGTASVINIKLMK-AGVAE 278 (365)
T ss_dssp CCEEEEE----------CC-SCTTCHHHHHHHHHHS---SSCEEE-STTCSSHHHHHHHHHHTCCSEEEECHHH-HCHHH
T ss_pred CCceEEE----------CC-CCcccHHHHHHHHhhC---CCCEEE-CCCCCCHHHHHHHHHhCCCCEEEEcCCc-cCHHH
Confidence 444443 11 2334899999999887 699988 67777888999998876 7778887554 33433
Q ss_pred H
Q 029540 156 S 156 (192)
Q Consensus 156 ~ 156 (192)
+
T Consensus 279 ~ 279 (365)
T 3ik4_A 279 G 279 (365)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=90.87 E-value=6.5 Score=34.75 Aligned_cols=123 Identities=14% Similarity=0.064 Sum_probs=80.2
Q ss_pred hhhhcCCCEeEeeCCCCC------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh
Q 029540 2 EAIVLGFDSLMVDGSHLP------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
++++.||+.+=+...+-| +++.++..+.|-+..-+ ++.+=.+ .+ ..+ ++++|.+|++
T Consensus 189 ~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~-d~~L~vD------aN---------~~~-~~~~Ai~~~~ 251 (412)
T 3stp_A 189 EAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGY-DNDLMLE------CY---------MGW-NLDYAKRMLP 251 (412)
T ss_dssp HHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCS-SSEEEEE------CT---------TCS-CHHHHHHHHH
T ss_pred HHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCC-CCeEEEE------CC---------CCC-CHHHHHHHHH
Confidence 467789999999876544 35666666665554421 2322221 01 123 6889988865
Q ss_pred ---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHHH
Q 029540 76 ---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVRK 151 (192)
Q Consensus 76 ---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~~ 151 (192)
+-+++++--- -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+.....-
T Consensus 252 ~Le~~~i~~iEeP-----------~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~li~~~a~D~v~ik~~~~G 316 (412)
T 3stp_A 252 KLAPYEPRWLEEP-----------VIADDVAGYAELNAMN---IVPISG-GEHEFSVIGCAELINRKAVSVLQYDTNRVG 316 (412)
T ss_dssp HHGGGCCSEEECC-----------SCTTCHHHHHHHHHTC---SSCEEE-CTTCCSHHHHHHHHHTTCCSEECCCHHHHT
T ss_pred HHHhcCCCEEECC-----------CCcccHHHHHHHHhCC---CCCEEe-CCCCCCHHHHHHHHHcCCCCEEecChhhcC
Confidence 4688888521 1333899999999887 699876 66667888999999887 777888665543
Q ss_pred HHHHH
Q 029540 152 AYMDS 156 (192)
Q Consensus 152 a~~~~ 156 (192)
.++.+
T Consensus 317 Git~a 321 (412)
T 3stp_A 317 GITAA 321 (412)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 34433
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.86 E-value=2.9 Score=36.47 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=71.9
Q ss_pred hhhhcCCCEeEeeCC-----CC---------CHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccC
Q 029540 2 EAIVLGFDSLMVDGS-----HL---------PFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKL 64 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l---------~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~ 64 (192)
++.+.||+.|=+... .. +.+.+++...++++..++ . ++.+=.+. + .-
T Consensus 162 ~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDa------n----------~~ 225 (407)
T 2o56_A 162 TAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEM------H----------AF 225 (407)
T ss_dssp HHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEEC------T----------TC
T ss_pred HHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEEC------C----------CC
Confidence 567889999998752 11 113445555555555443 1 22222111 0 12
Q ss_pred CCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-C
Q 029540 65 TDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-V 140 (192)
Q Consensus 65 T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i 140 (192)
-++++|.+|+++ -+++++-- + -|.-|++-+++|++.+ ++|++. |.+=...++++++++.| +
T Consensus 226 ~~~~~a~~~~~~l~~~~i~~iE~----------P-~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~~~ 290 (407)
T 2o56_A 226 TDTTSAIQFGRMIEELGIFYYEE----------P-VMPLNPAQMKQVADKV---NIPLAA-GERIYWRWGYRPFLENGSL 290 (407)
T ss_dssp SCHHHHHHHHHHHGGGCCSCEEC----------S-SCSSSHHHHHHHHHHC---CSCEEE-CTTCCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEeC----------C-CChhhHHHHHHHHHhC---CCCEEe-CCCcCCHHHHHHHHHcCCC
Confidence 368889888654 57776641 1 2445899999999988 699887 45555678999999887 5
Q ss_pred eEeecch
Q 029540 141 RKFNVNT 147 (192)
Q Consensus 141 ~KINi~T 147 (192)
.=||+..
T Consensus 291 d~v~ik~ 297 (407)
T 2o56_A 291 SVIQPDI 297 (407)
T ss_dssp SEECCCT
T ss_pred CEEecCc
Confidence 6666643
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=6.4 Score=32.81 Aligned_cols=82 Identities=9% Similarity=0.098 Sum_probs=53.9
Q ss_pred CHHHHHHH---hhhhCCcEEEEecCc-----CC--------------CCCCCCCCC---CCHHHHHHHHhhhccCCccEE
Q 029540 66 DVNQAEEF---IDETDIDALAVCIGN-----VH--------------GKYPSSGPN---LKLDLLKDLHALSSKKGVLLV 120 (192)
Q Consensus 66 ~peea~~F---v~~TgvD~LAvaiGt-----~H--------------G~y~~~~p~---ld~~~L~~I~~~~~~~~iPLV 120 (192)
++++..+| +++.|+|.+.++-.+ .+ |.|.+ +. ..++.++++++.+. .++|++
T Consensus 170 ~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg--~~~~~~~~~~i~~v~~~~~-~~ipvi 246 (311)
T 1jub_A 170 DLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGG--AYIKPTALANVRAFYTRLK-PEIQII 246 (311)
T ss_dssp SHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEES--GGGHHHHHHHHHHHHTTSC-TTSEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccc--ccccHHHHHHHHHHHHhcC-CCCCEE
Confidence 45555443 556799999876443 11 22322 21 24566777777662 149999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.=||-.. .++..+++..|..=|-++|.+..
T Consensus 247 ~~GGI~~-~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 247 GTGGIET-GQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EESSCCS-HHHHHHHHHHTCSEEEECHHHHH
T ss_pred EECCCCC-HHHHHHHHHcCCCEEEEchHHHh
Confidence 8886554 45688888999999999999864
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=3.7 Score=37.23 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=59.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecC-cCCCCCC--CCCCCCCHHHHHHHHhhhccC------CccEEeecCCCCCHHHHHH
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIG-NVHGKYP--SSGPNLKLDLLKDLHALSSKK------GVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiG-t~HG~y~--~~~p~ld~~~L~~I~~~~~~~------~iPLVlHGgSG~~~e~~~~ 134 (192)
..++++|+. +.+.|+|++-|.+| +.|.... .+...-.+..|.++.+.++.. ++|+..=||-..|.| +.+
T Consensus 292 V~t~~~a~~-l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~d-i~k 369 (503)
T 1me8_A 292 IVDGEGFRY-LADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYH-MTL 369 (503)
T ss_dssp ECSHHHHHH-HHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHH-HHH
T ss_pred ccCHHHHHH-HHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHH-HHH
Confidence 467778877 45789999998652 2222111 111112567777777665433 599999999887765 999
Q ss_pred HHhcCCeEeecchHHH
Q 029540 135 CIERGVRKFNVNTEVR 150 (192)
Q Consensus 135 ~i~~Gi~KINi~T~l~ 150 (192)
|+.+|..=+-++|.+.
T Consensus 370 AlalGA~~V~iG~~~~ 385 (503)
T 1me8_A 370 ALAMGADFIMLGRYFA 385 (503)
T ss_dssp HHHTTCSEEEESHHHH
T ss_pred HHHcCCCEEEECchhh
Confidence 9999999999999884
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=90.77 E-value=1.6 Score=37.80 Aligned_cols=109 Identities=9% Similarity=0.109 Sum_probs=69.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++.+.||+.|-+-..+ ++++.++..+.|.+..- -++.+=.+ .+ ..+ ++++|.+|+++ .|
T Consensus 155 ~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g-~d~~l~vD------an---------~~~-~~~~a~~~~~~l~~~~ 216 (379)
T 2rdx_A 155 RHRAAGYRQFQIKVGA-DWQSDIDRIRACLPLLE-PGEKAMAD------AN---------QGW-RVDNAIRLARATRDLD 216 (379)
T ss_dssp HHHHTTCCEEEEECCS-CHHHHHHHHHHHGGGSC-TTCEEEEE------CT---------TCS-CHHHHHHHHHHTTTSC
T ss_pred HHHHcCCCEEEEeccC-CHHHHHHHHHHHHHhcC-CCCEEEEE------CC---------CCC-CHHHHHHHHHHHHhCC
Confidence 5678899999998776 45555544444433221 12332111 01 123 58899998765 46
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
+ ++- .+ -| |++.+++|++.+ ++|++.=+ +=.+.++++++++.| +.=||+.
T Consensus 217 i-~iE----------~P-~~--~~~~~~~l~~~~---~iPI~~de-~i~~~~~~~~~i~~~~~d~v~ik 267 (379)
T 2rdx_A 217 Y-ILE----------QP-CR--SYEECQQVRRVA---DQPMKLDE-CVTGLHMAQRIVADRGAEICCLK 267 (379)
T ss_dssp C-EEE----------CC-SS--SHHHHHHHHTTC---CSCEEECT-TCCSHHHHHHHHHHTCCSEEEEE
T ss_pred e-EEe----------CC-cC--CHHHHHHHHhhC---CCCEEEeC-CcCCHHHHHHHHHcCCCCEEEEe
Confidence 6 552 11 23 999999999887 69988755 557778999999887 5566763
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.42 E-value=3.6 Score=34.98 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=56.7
Q ss_pred CCHHHHHHHhhhhCCcEEEE-e--cCcCCCCCCCCCCCCCHHHHHHHHh-hhccCC-ccEEeecCCCCCHHHHHHHHhcC
Q 029540 65 TDVNQAEEFIDETDIDALAV-C--IGNVHGKYPSSGPNLKLDLLKDLHA-LSSKKG-VLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAv-a--iGt~HG~y~~~~p~ld~~~L~~I~~-~~~~~~-iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
.||+.|++ +++-|+|++=+ + |||-- .-.+++.|+.|.+ .. + +|++.=||-+.|.+ ..++.++|
T Consensus 133 ~D~~~ak~-l~~~G~~aVmPlg~pIGsG~-------Gi~~~~~L~~i~~~~~---~~vPVI~~GGI~tpsD-Aa~AmeLG 200 (268)
T 2htm_A 133 PDLVLAKR-LAALGTATVMPLAAPIGSGW-------GVRTRALLELFAREKA---SLPPVVVDAGLGLPSH-AAEVMELG 200 (268)
T ss_dssp SCHHHHHH-HHHHTCSCBEEBSSSTTTCC-------CSTTHHHHHHHHHTTT---TSSCBEEESCCCSHHH-HHHHHHTT
T ss_pred CCHHHHHH-HHhcCCCEEEecCccCcCCc-------ccCCHHHHHHHHHhcC---CCCeEEEeCCCCCHHH-HHHHHHcC
Confidence 48877777 44689999844 1 66622 2235788999988 44 6 99999998887755 99999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
..-|=++|.+.
T Consensus 201 AdgVlVgSAI~ 211 (268)
T 2htm_A 201 LDAVLVNTAIA 211 (268)
T ss_dssp CCEEEESHHHH
T ss_pred CCEEEEChHHh
Confidence 99999999774
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=90.38 E-value=0.66 Score=39.24 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcC----------CCC-----------CCCCC-------CCCCHHHHHHHHhhhccCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNV----------HGK-----------YPSSG-------PNLKLDLLKDLHALSSKKG 116 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~----------HG~-----------y~~~~-------p~ld~~~L~~I~~~~~~~~ 116 (192)
++++++.+-+ +.|+|++++. |-. |+. +.... ...+++.++++++.+ +
T Consensus 133 ~~~~e~~~a~-~~Gad~V~~~-G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~---~ 207 (305)
T 2nv1_A 133 RDLGEATRRI-AEGASMLRTK-GEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDG---K 207 (305)
T ss_dssp SSHHHHHHHH-HTTCSEEEEC-CCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHT---S
T ss_pred CCHHHHHHHH-HCCCCEEEec-cccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhc---C
Confidence 5788888866 7899999985 421 110 11000 235788899998876 6
Q ss_pred ccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 117 VLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 117 iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+|+++=+..|+ +.+++.++...|..=|-++|.+.
T Consensus 208 iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~ 242 (305)
T 2nv1_A 208 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 242 (305)
T ss_dssp CSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGG
T ss_pred CCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 99986677788 78899999999999999999875
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=90.33 E-value=7.6 Score=32.94 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=78.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.+-+...+ +.++.++..+.|-+. .-++.+ .| ..+ ..| ++++|.+|+++ .+
T Consensus 149 ~~~~~Gf~~iKik~g~-~~~~d~~~v~avr~~--g~~~~l-----~v-Dan---------~~~-~~~~a~~~~~~l~~~~ 209 (345)
T 2zad_A 149 KIFEEGFRVIKIKVGE-NLKEDIEAVEEIAKV--TRGAKY-----IV-DAN---------MGY-TQKEAVEFARAVYQKG 209 (345)
T ss_dssp HHHHTTCSEEEEECCS-CHHHHHHHHHHHHHH--STTCEE-----EE-ECT---------TCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHcCcCEEEEeecC-CHHHHHHHHHHHHhh--CCCCeE-----EE-ECC---------CCC-CHHHHHHHHHHHHhcC
Confidence 4678899999998765 567677666555443 223433 12 111 123 58899888654 57
Q ss_pred Cc--EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHHHHHHH
Q 029540 79 ID--ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVRKAYMD 155 (192)
Q Consensus 79 vD--~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~~a~~~ 155 (192)
++ ++- .+ -|.-|++-+++|++.+ ++|++.- .|=...++++++++.| +.=||+...- -.+++
T Consensus 210 i~~~~iE----------~P-~~~~~~~~~~~l~~~~---~ipia~d-E~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~ 273 (345)
T 2zad_A 210 IDIAVYE----------QP-VRREDIEGLKFVRFHS---PFPVAAD-ESARTKFDVMRLVKEEAVDYVNIKLMK-SGISD 273 (345)
T ss_dssp CCCSEEE----------CC-SCTTCHHHHHHHHHHS---SSCEEES-TTCCSHHHHHHHHHHTCCSEEEECHHH-HHHHH
T ss_pred CCeeeee----------CC-CCcccHHHHHHHHHhC---CCCEEEe-CCcCCHHHHHHHHHhCCCCEEEEeccc-ccHHH
Confidence 88 553 11 2446899999999887 6998884 4555788899999888 6668885544 44444
Q ss_pred H
Q 029540 156 S 156 (192)
Q Consensus 156 ~ 156 (192)
+
T Consensus 274 ~ 274 (345)
T 2zad_A 274 A 274 (345)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=90.20 E-value=2.5 Score=35.17 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=72.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+.++|.+.|-|=.-..+ + ..++++.+|++|+-+--.| ..-|..+..+.+++ .+|.
T Consensus 104 ~~~~aGAd~itvH~Ea~~---~---~~~~i~~ir~~G~k~Gval----------------np~Tp~e~l~~~l~--~vD~ 159 (246)
T 3inp_A 104 SFAKAGATSIVFHPEASE---H---IDRSLQLIKSFGIQAGLAL----------------NPATGIDCLKYVES--NIDR 159 (246)
T ss_dssp HHHHHTCSEEEECGGGCS---C---HHHHHHHHHTTTSEEEEEE----------------CTTCCSGGGTTTGG--GCSE
T ss_pred HHHHcCCCEEEEccccch---h---HHHHHHHHHHcCCeEEEEe----------------cCCCCHHHHHHHHh--cCCE
Confidence 356777777766433222 2 3466677787776332211 01244455555555 5897
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+. +.+++=.+.+. ...--++.++++++...+ .++|+..=|| +..+.++++++.|..-+=++|.+.
T Consensus 160 Vl--vMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGG--I~~~ti~~~~~aGAD~~V~GSaIf 227 (246)
T 3inp_A 160 VL--IMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGG--VNPYNIAEIAVCGVNAFVAGSAIF 227 (246)
T ss_dssp EE--EECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESS--CCTTTHHHHHTTTCCEEEESHHHH
T ss_pred EE--EeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECC--cCHHHHHHHHHcCCCEEEEehHHh
Confidence 65 44665223220 112235667777776532 3589999995 557889999999999999999875
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=90.16 E-value=3.7 Score=35.84 Aligned_cols=115 Identities=10% Similarity=-0.020 Sum_probs=73.9
Q ss_pred hhhhcCCCEeEeeCCCC--CH-HHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC-CHHHHHHHhhh-
Q 029540 2 EAIVLGFDSLMVDGSHL--PF-KDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT-DVNQAEEFIDE- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--~~-eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T-~peea~~Fv~~- 76 (192)
++++.||+.|-+.+|.+ ++ ++.++..+.|.+.+-. ++.+=.+. + ..|. ++++|.+|+++
T Consensus 155 ~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~-d~~l~vDa------n---------~~~~~~~~~a~~~~~~l 218 (401)
T 2hzg_A 155 AARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGP-DGDLMVDV------G---------QIFGEDVEAAAARLPTL 218 (401)
T ss_dssp HHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCS-SSEEEEEC------T---------TTTTTCHHHHHTTHHHH
T ss_pred HHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCC-CCeEEEEC------C---------CCCCCCHHHHHHHHHHH
Confidence 56788999999884321 34 6666666666554411 22222111 1 1343 78898888654
Q ss_pred --hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHh-hhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 77 --TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHA-LSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 77 --TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~-~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
-+++++--. -+.-|++-+++|++ .+ ++|++.=+.- .+.++++++++.| +.=||+..
T Consensus 219 ~~~~i~~iEqP-----------~~~~d~~~~~~l~~~~~---~iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~ 278 (401)
T 2hzg_A 219 DAAGVLWLEEP-----------FDAGALAAHAALAGRGA---RVRIAGGEAA-HNFHMAQHLMDYGRIGFIQIDC 278 (401)
T ss_dssp HHTTCSEEECC-----------SCTTCHHHHHHHHTTCC---SSEEEECTTC-SSHHHHHHHHHHSCCSEEEECH
T ss_pred HhcCCCEEECC-----------CCccCHHHHHHHHhhCC---CCCEEecCCc-CCHHHHHHHHHCCCCCEEEeCc
Confidence 588887411 13358999999998 76 6998875554 5678899999877 66677753
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=90.15 E-value=4.4 Score=35.88 Aligned_cols=112 Identities=9% Similarity=0.117 Sum_probs=73.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++.+.||+.|-+...+ ++++.++..+.|.+..-. ++.+=.+ .+ ..| ++++|.+|+++ -+
T Consensus 195 ~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~avG~-d~~l~vD------an---------~~~-~~~eai~~~~~L~~~~ 256 (428)
T 3bjs_A 195 EYIARGYKALKLRIGD-AARVDIERVRHVRKVLGD-EVDILTD------AN---------TAY-TMADARRVLPVLAEIQ 256 (428)
T ss_dssp HHHHHTCSEEEEECCS-CHHHHHHHHHHHHHHHCT-TSEEEEE------CT---------TCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCEEEECCCC-CHHHHHHHHHHHHHhcCC-CCEEEEE------CC---------CCC-CHHHHHHHHHHHHhcC
Confidence 5678899999998776 677777776666554421 2332111 01 123 58899888654 58
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCC-ccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKG-VLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~-iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
++++-= + -|.-|++-+++|++.+ + +|++.-+ |=.+.++++++++.| +.=||+.
T Consensus 257 i~~iEq----------P-~~~~d~~~~~~l~~~~---~~iPIa~dE-~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 257 AGWLEE----------P-FACNDFASYREVAKIT---PLVPIAAGE-NHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp CSCEEC----------C-SCTTCHHHHHHHTTTC---SSSCEEECT-TCCSHHHHHHHHTTCCEEEECCB
T ss_pred CCEEEC----------C-CCccCHHHHHHHHHhC---CCCcEEcCC-CcCCHHHHHHHHHhCCCCEEEeC
Confidence 887641 1 1334888899998877 6 9988755 445688999999887 4556664
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=7.2 Score=34.13 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=77.3
Q ss_pred hhhhcCCCEeEeeCCCC------CHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029540 2 EAIVLGFDSLMVDGSHL------PFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l------~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
++++.||+.+=+.-... ++++.++..+.|-+..- ...+.|.+ + ..+ ++++|.+|+
T Consensus 150 ~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDa--------N---------~~~-~~~~A~~~~ 211 (393)
T 4dwd_A 150 RVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDA--------N---------NGY-SVGGAIRVG 211 (393)
T ss_dssp HHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEEC--------T---------TCC-CHHHHHHHH
T ss_pred HHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEEC--------C---------CCC-CHHHHHHHH
Confidence 34677999988876543 67888887777665442 22222211 1 123 478888886
Q ss_pred h---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029540 75 D---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 75 ~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
+ +.+++++-= + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.|+.=||+...
T Consensus 212 ~~L~~~~i~~iEq---------P--~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~~d~v~~k~~ 273 (393)
T 4dwd_A 212 RALEDLGYSWFEE---------P--VQHYHVGAMGEVAQRL---DITVSA-GEQTYTLQALKDLILSGVRMVQPDIV 273 (393)
T ss_dssp HHHHHTTCSEEEC---------C--SCTTCHHHHHHHHHHC---SSEEEB-CTTCCSHHHHHHHHHHTCCEECCCTT
T ss_pred HHHHhhCCCEEEC---------C--CCcccHHHHHHHHhhC---CCCEEe-cCCcCCHHHHHHHHHcCCCEEEeCcc
Confidence 5 468888751 1 1334899999999887 699877 55667788999999988777888543
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=89.99 E-value=5.3 Score=34.93 Aligned_cols=115 Identities=9% Similarity=-0.024 Sum_probs=77.5
Q ss_pred hhhhcCCCEeEee--CC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh--
Q 029540 2 EAIVLGFDSLMVD--GS-HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE-- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D--~S-~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~-- 76 (192)
++++.||+.+=++ |. ..+.++.++..+.|.+..-+ ++.+=.+ . ...+|++++|.+|+++
T Consensus 167 ~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~-d~~l~vD------a---------N~~~~~~~~A~~~~~~L~ 230 (394)
T 3mkc_A 167 KAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGH-DTDMMVD------Y---------LYRFTDWYEVARLLNSIE 230 (394)
T ss_dssp HHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCS-SSEEEEE------C---------TTCCCCHHHHHHHHHHTG
T ss_pred HHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCC-CCeEEEe------C---------CCCCCCHHHHHHHHHHhh
Confidence 3567899999885 21 14677878777776665421 2332211 0 1246789999999765
Q ss_pred -hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 77 -TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 77 -TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
-|++++--- -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+..
T Consensus 231 ~~~i~~iEeP-----------~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~~~d~v~~k~ 288 (394)
T 3mkc_A 231 DLELYFAEAT-----------LQHDDLSGHAKLVENT---RSRICG-AEMSTTRFEAEEWITKGKVHLLQSDY 288 (394)
T ss_dssp GGCCSEEESC-----------SCTTCHHHHHHHHHHC---SSCBEE-CTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred hcCCeEEECC-----------CCchhHHHHHHHHhhC---CCCEEe-CCCCCCHHHHHHHHHcCCCCeEecCc
Confidence 588887421 1334889999999988 699866 56666778899999887 66778753
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.84 E-value=0.18 Score=41.25 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
++|.+..+-+.. ++|.+. ++++|+.+.+. .+..-++.|+++++.++. .++|++.=| |+..+++.++++.|..
T Consensus 122 ~t~~e~~~~~~~-~~D~v~--~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G--GI~~~~~~~~~~aGad 196 (230)
T 1tqj_A 122 STPLDFLEYVLP-VCDLIL--IMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG--GLKPNNTWQVLEAGAN 196 (230)
T ss_dssp TCCGGGGTTTGG-GCSEEE--EESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES--SCCTTTTHHHHHHTCC
T ss_pred CCcHHHHHHHHh-cCCEEE--EEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC--CcCHHHHHHHHHcCCC
Confidence 444444433322 789654 78888766531 133457888888887631 259999988 5556999999999999
Q ss_pred EeecchHHHH
Q 029540 142 KFNVNTEVRK 151 (192)
Q Consensus 142 KINi~T~l~~ 151 (192)
=+=++|.+..
T Consensus 197 ~vvvGSai~~ 206 (230)
T 1tqj_A 197 AIVAGSAVFN 206 (230)
T ss_dssp EEEESHHHHT
T ss_pred EEEECHHHHC
Confidence 9999999863
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.62 E-value=3.8 Score=35.66 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred HHHHHHhhhhCCcEEEEecCcCC-CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029540 68 NQAEEFIDETDIDALAVCIGNVH-GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~H-G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+.++.+. +.|+|++.+. |+.. ..|. .|.++++.++++++.+ ++|+++ |+ ..+.++.+++.+.|+.=|-++
T Consensus 169 e~a~~~~-~agad~i~i~-~~~~~~~~~--~~~~~~~~i~~l~~~~---~~pvi~-gg-i~t~e~a~~~~~~Gad~i~vg 239 (393)
T 2qr6_A 169 EIAPIVI-KAGADLLVIQ-GTLISAEHV--NTGGEALNLKEFIGSL---DVPVIA-GG-VNDYTTALHMMRTGAVGIIVG 239 (393)
T ss_dssp HHHHHHH-HTTCSEEEEE-CSSCCSSCC--CC-----CHHHHHHHC---SSCEEE-EC-CCSHHHHHHHHTTTCSEEEES
T ss_pred HHHHHHH-HCCCCEEEEe-CCccccccC--CCcccHHHHHHHHHhc---CCCEEE-CC-cCCHHHHHHHHHcCCCEEEEC
Confidence 4455544 5799999765 2220 1122 2444666688888877 699999 43 466788999999999988886
Q ss_pred h
Q 029540 147 T 147 (192)
Q Consensus 147 T 147 (192)
+
T Consensus 240 ~ 240 (393)
T 2qr6_A 240 G 240 (393)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.61 E-value=7.4 Score=31.73 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
|..+..+.+++.-.+|.+. +.++|=.+.+. ...-.+++++++++..+ ++|+..=| |+..+.++++++.|..-+
T Consensus 125 tp~~~~~~~l~~g~~D~Vl--vmsV~pGf~gq~f~~~~l~ki~~lr~~~~--~~~I~VdG--GI~~~ti~~~~~aGAd~~ 198 (227)
T 1tqx_A 125 TDVQKLVPILDTNLINTVL--VMTVEPGFGGQSFMHDMMGKVSFLRKKYK--NLNIQVDG--GLNIETTEISASHGANII 198 (227)
T ss_dssp SCGGGGHHHHTTTCCSEEE--EESSCTTCSSCCCCGGGHHHHHHHHHHCT--TCEEEEES--SCCHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHhhcCCcCEEE--EeeeccCCCCcccchHHHHHHHHHHHhcc--CCeEEEEC--CCCHHHHHHHHHcCCCEE
Confidence 3344455555422489875 46666434321 12235777888887764 68999999 677899999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=++|.+.
T Consensus 199 V~GsaIf 205 (227)
T 1tqx_A 199 VAGTSIF 205 (227)
T ss_dssp EESHHHH
T ss_pred EEeHHHh
Confidence 9999886
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.48 E-value=4.8 Score=33.56 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=76.9
Q ss_pred hhhhcCCCEeEeeCCC-------CCHHHHHHHHHHHHHHHHhCCCe--EEEecccc-ccCCCCCccccccccCCCHHHHH
Q 029540 2 EAIVLGFDSLMVDGSH-------LPFKDNISHTKYISFLAHSKGML--VEAELGRL-SGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-------l~~eeNi~~Tk~vv~~Ah~~gv~--VEaElG~i-~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+-+++|..-|.+.+.. .|.+|-+.+.+.+++.+...|++ |=|=.+.. .|..+... . .-.-.+.|+
T Consensus 101 ~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~--~---~~~ai~ra~ 175 (255)
T 2qiw_A 101 QILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFED--P---MVEAIKRIK 175 (255)
T ss_dssp HHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSS--H---HHHHHHHHH
T ss_pred HHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchH--H---HHHHHHHHH
Confidence 4567888888886653 47788888888888888766665 54444432 12111000 0 001124555
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC--CHHHHHHHHhcCCeEeecchH
Q 029540 72 EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL--SAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~--~~e~~~~~i~~Gi~KINi~T~ 148 (192)
.|. +-|+|++-+ +|. | +.+.+++|.+.+ ++|+.+-.+.+. |.-.+.++-++|++.|-++..
T Consensus 176 a~~-eAGAd~i~~-----e~~-----~--~~~~~~~i~~~~---~~P~n~~~~~~~~~p~~~~~eL~~lGv~~v~~~~~ 238 (255)
T 2qiw_A 176 LME-QAGARSVYP-----VGL-----S--TAEQVERLVDAV---SVPVNITAHPVDGHGAGDLATLAGLGVRRVTFGPL 238 (255)
T ss_dssp HHH-HHTCSEEEE-----CCC-----C--SHHHHHHHHTTC---SSCBEEECBTTTBBTTBCHHHHHHTTCCEEECTTH
T ss_pred HHH-HcCCcEEEE-----cCC-----C--CHHHHHHHHHhC---CCCEEEEecCCCCCCCCCHHHHHHcCCCEEEEHHH
Confidence 544 679999876 221 2 456778887776 588777644332 333345566779999999887
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.11 E-value=6.7 Score=31.51 Aligned_cols=119 Identities=13% Similarity=0.237 Sum_probs=75.9
Q ss_pred hhhhcCCCEeEeeCC--CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGS--HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S--~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.|.++|.+.|.++.| .+|++| .++.++.|+.+|+.+=.+++... +.++ +.+.+.
T Consensus 77 ~~~~~Gad~Vll~~ser~l~~~e----~~~~~~~a~~~Gl~~iv~v~~~~-------------------e~~~-~~~~~~ 132 (219)
T 2h6r_A 77 AIKDCGCKGTLINHSEKRMLLAD----IEAVINKCKNLGLETIVCTNNIN-------------------TSKA-VAALSP 132 (219)
T ss_dssp HHHHHTCCEEEESBTTBCCBHHH----HHHHHHHHHHHTCEEEEEESSSH-------------------HHHH-HTTTCC
T ss_pred HHHHcCCCEEEECCccccCCHHH----HHHHHHHHHHCCCeEEEEeCCch-------------------HHHH-HHhCCC
Confidence 467899999999988 699988 68899999999998888876531 1111 233466
Q ss_pred cEEEEecCcCC--CC--CCCCCCC-CCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNVH--GK--YPSSGPN-LKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~H--G~--y~~~~p~-ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+++---+.- |. -.. .|. ++ ..++.|++... ++|++. | +|+ ++++.+.+.+.|+.=+=|++.+.
T Consensus 133 ~~i~~~~~~~iGtG~~~~t~-~~~~~~-~~~~~ir~~~~--~~~ii~-g-gGI~~~~~~~~~~~~gaDgvlVGsAi~ 203 (219)
T 2h6r_A 133 DCIAVEPPELIGTGIPVSKA-NPEVVE-GTVRAVKEINK--DVKVLC-G-AGISKGEDVKAALDLGAEGVLLASGVV 203 (219)
T ss_dssp SEEEECCCC---------------CSH-HHHHHHHHHCT--TCEEEE-C-SSCCSHHHHHHHHTTTCCCEEESHHHH
T ss_pred CEEEEEeccccccCCCCccC-CHHHHH-HHHHHHHhccC--CCeEEE-E-eCcCcHHHHHHHhhCCCCEEEEcHHHh
Confidence 77766322221 20 001 122 22 33445555432 477664 3 355 47889999999999998998875
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=89.07 E-value=9.4 Score=32.67 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=75.4
Q ss_pred hhcCCCEeEeeCCCC-----CHHHHHHHH-------HHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 4 IVLGFDSLMVDGSHL-----PFKDNISHT-------KYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 4 i~~GFtSVM~D~S~l-----~~eeNi~~T-------k~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
.++||+-| +-=|.. .|.+|++.+ -++++.||+.|... + .+-.+|+||+
T Consensus 118 k~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~T------i-------------~~v~~~eeA~ 177 (286)
T 2p10_A 118 KEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLT------T-------------PYVFSPEDAV 177 (286)
T ss_dssp HHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEE------C-------------CEECSHHHHH
T ss_pred HHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeE------E-------------EecCCHHHHH
Confidence 46788877 554422 255555443 36677788665321 1 1447899999
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCC---C-HHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhc--CCeEe
Q 029540 72 EFIDETDIDALAVCIGNVHGKYPSSGPNL---K-LDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIER--GVRKF 143 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l---d-~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~--Gi~KI 143 (192)
... +-|.|.+++-.|..-|.--+....+ + .+++++|.+.+++ .++.+..|||-=...||+++++++ |+.=+
T Consensus 178 amA-~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~ 256 (286)
T 2p10_A 178 AMA-KAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGF 256 (286)
T ss_dssp HHH-HHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEE
T ss_pred HHH-HcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEE
Confidence 865 8899999999994333222111112 2 4566666666543 246555566533357889999998 88776
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=..+.+-
T Consensus 257 ~gASsie 263 (286)
T 2p10_A 257 YGASSME 263 (286)
T ss_dssp EESHHHH
T ss_pred Eeehhhh
Confidence 6666554
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.7 Score=39.64 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=74.2
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCC----CCCHHHHHHHHhhhccC----CccE
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGP----NLKLDLLKDLHALSSKK----GVLL 119 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p----~ld~~~L~~I~~~~~~~----~iPL 119 (192)
.+|.+|+...++++ +.|+|.+-+. ...+.+-+ | ++=+..+++|-+.++.. ++|+
T Consensus 170 ~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i~i~--d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~~~~~~~i 245 (354)
T 3cyv_A 170 MMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIF--DTWGGVLT--GRDYQQFSLYYMHKIVDGLLRENDGRRVPV 245 (354)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE--CTTGGGSC--HHHHHHHTHHHHHHHHHHSCSEETTEECCE
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe--CCccccCC--HHHHHHHhHHHHHHHHHHHHHhcCCCCCCE
Confidence 47899998876665 4799977654 22222211 2 23334456676666433 4896
Q ss_pred EeecCCCCCHHHHHHHHhcCCeEeecch--HHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 120 VLHGASGLSAELIKGCIERGVRKFNVNT--EVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 120 VlHGgSG~~~e~~~~~i~~Gi~KINi~T--~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
+.|.+ |. ...+....++|+.-+|++. ++..+ .+.+.. .+.|+. ++....+.+++.+++.|+.||.
T Consensus 246 i~~~~-g~-~~~l~~l~~~g~d~i~~d~~~dl~~~-~~~~g~~~~l~Gn~dp~-~l~~t~e~i~~~v~~~l~~~g~ 317 (354)
T 3cyv_A 246 TLFTK-GG-GQWLEAMAETGCDALGLDWTTDIADA-RRRVGNKVALQGNMDPS-MLYAPPARIEEEVATILAGFGH 317 (354)
T ss_dssp EEECT-TT-TTTHHHHHTTSCSEEECCTTSCHHHH-HHHHTTTSEEECCBCGG-GGGSCHHHHHHHHHHHHTTTTT
T ss_pred EEECC-CH-HHHHHHHHhcCCCEEEeCCCCCHHHH-HHHhCCCeEEEecCChH-HhCCCHHHHHHHHHHHHHHhCC
Confidence 66643 54 5567778899999999973 34333 222321 234663 3455678999999999998875
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=88.88 E-value=1.6 Score=38.11 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=68.4
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++.||+.+-+...+- ..++.++..+++.+.+- ...+.|.+ + ..| ++++|.+
T Consensus 158 ~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDa--------n---------~~~-~~~~ai~ 219 (392)
T 3p3b_A 158 QGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDA--------N---------NAY-NLNLTKE 219 (392)
T ss_dssp HHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEEC--------T---------TCC-CHHHHHH
T ss_pred HHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEEC--------C---------CCC-CHHHHHH
Confidence 46788999999876542 23444444444433331 11122211 0 123 6899999
Q ss_pred Hhhhh---CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhh-----hccCCccEEeecCCCCCHHHHHHHHhcC-CeEe
Q 029540 73 FIDET---DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHAL-----SSKKGVLLVLHGASGLSAELIKGCIERG-VRKF 143 (192)
Q Consensus 73 Fv~~T---gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~-----~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KI 143 (192)
|+++. +++++-- + -| -|++-+++|++. + ++|++.-+ - ...++++++++.| +.=|
T Consensus 220 ~~~~l~~~~i~~iE~----------P-~~-~d~~~~~~l~~~l~~~g~---~iPIa~dE-~-~~~~~~~~~i~~~~~d~v 282 (392)
T 3p3b_A 220 VLAALSDVNLYWLEE----------A-FH-EDEALYEDLKEWLGQRGQ---NVLIADGE-G-LASPHLIEWATRGRVDVL 282 (392)
T ss_dssp HHHHTTTSCEEEEEC----------S-SS-CCHHHHHHHHHHHHHHTC---CCEEEECC-S-SCCTTHHHHHHTTSCCEE
T ss_pred HHHHHHhcCCCEEec----------C-Cc-ccHHHHHHHHHhhccCCC---CccEEecC-C-CCHHHHHHHHHcCCCCEE
Confidence 97663 5665431 1 24 589999999987 6 69999887 3 4456799999888 5556
Q ss_pred ecch
Q 029540 144 NVNT 147 (192)
Q Consensus 144 Ni~T 147 (192)
|+..
T Consensus 283 ~ik~ 286 (392)
T 3p3b_A 283 QYDI 286 (392)
T ss_dssp CCBT
T ss_pred EeCc
Confidence 6643
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=2 Score=34.69 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=71.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|-+-|+.-.. ..++.+.|+.+|+.+ +.| . .+|+|+.+ ..+.|+|.
T Consensus 83 ~A~~aGAd~v~~p~~----------d~~v~~~~~~~g~~~------i~G------------~-~t~~e~~~-A~~~Gad~ 132 (214)
T 1wbh_A 83 EVTEAGAQFAISPGL----------TEPLLKAATEGTIPL------IPG------------I-STVSELML-GMDYGLKE 132 (214)
T ss_dssp HHHHHTCSCEEESSC----------CHHHHHHHHHSSSCE------EEE------------E-SSHHHHHH-HHHTTCCE
T ss_pred HHHHcCCCEEEcCCC----------CHHHHHHHHHhCCCE------EEe------------c-CCHHHHHH-HHHCCCCE
Confidence 467777777764432 246778888777432 211 2 34888877 55789999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
+.+ |+. .+..-++.|++|+..+. ++|+|-=| |+..+++...++. |+.=+= +|.+.
T Consensus 133 v~~--------Fpa-~~~gG~~~lk~i~~~~~--~ipvvaiG--GI~~~n~~~~l~agg~~~v~-gS~i~ 188 (214)
T 1wbh_A 133 FKF--------FPA-EANGGVKALQAIAGPFS--QVRFCPTG--GISPANYRDYLALKSVLCIG-GSWLV 188 (214)
T ss_dssp EEE--------TTT-TTTTHHHHHHHHHTTCT--TCEEEEBS--SCCTTTHHHHHTSTTBSCEE-EGGGS
T ss_pred EEE--------ecC-ccccCHHHHHHHhhhCC--CCeEEEEC--CCCHHHHHHHHhcCCCeEEE-ecccc
Confidence 988 443 12223788899988774 59999989 5667899999998 776666 67664
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=1.9 Score=35.33 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=77.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+.++|.+.|-|=.-.. . ....++++.+|++|+.+-..| . .-|..+..+.+++ ++|.
T Consensus 75 ~~~~aGAd~itvh~Ea~----~-~~~~~~i~~i~~~G~k~gv~l-n---------------p~tp~~~~~~~l~--~~D~ 131 (231)
T 3ctl_A 75 QLARAGADFITLHPETI----N-GQAFRLIDEIRRHDMKVGLIL-N---------------PETPVEAMKYYIH--KADK 131 (231)
T ss_dssp HHHHHTCSEEEECGGGC----T-TTHHHHHHHHHHTTCEEEEEE-C---------------TTCCGGGGTTTGG--GCSE
T ss_pred HHHHcCCCEEEECcccC----C-ccHHHHHHHHHHcCCeEEEEE-E---------------CCCcHHHHHHHHh--cCCE
Confidence 46778887776532210 1 123578888998887544333 0 1133333444443 6897
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecc-hHHH
Q 029540 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVN-TEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~-T~l~ 150 (192)
+-+ -|+|..+.+. -..--++.++++++..+. .++|+..=| |+..+.+.++++.|..=+=++ |.+.
T Consensus 132 Vlv--msV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdG--GI~~~~~~~~~~aGAd~~V~G~saif 200 (231)
T 3ctl_A 132 ITV--MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDG--SCNQATYEKLMAAGADVFIVGTSGLF 200 (231)
T ss_dssp EEE--ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEES--CCSTTTHHHHHHHTCCEEEECTTTTG
T ss_pred EEE--eeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEEC--CcCHHHHHHHHHcCCCEEEEccHHHh
Confidence 765 5666555421 122346777777777632 358999988 677889999999999999999 8875
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=88.68 E-value=11 Score=32.44 Aligned_cols=123 Identities=9% Similarity=0.040 Sum_probs=79.7
Q ss_pred hhhhc-CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVL-GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~-GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++. ||+.+=+.-..-|.++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|+++ .
T Consensus 149 ~~~~~~G~~~~K~K~g~~~~~~d~~~v~avR~a~g~-~~~l~vD------an---------~~~-~~~~a~~~~~~l~~~ 211 (367)
T 3dg3_A 149 RIRETYGINTFKVKVGRRPVQLDTAVVRALRERFGD-AIELYVD------GN---------RGW-SAAESLRAMREMADL 211 (367)
T ss_dssp HHHHHHCCCEEEEECCCSSTHHHHHHHHHHHHHHGG-GSEEEEE------CT---------TCS-CHHHHHHHHHHTTTS
T ss_pred HHHHhcCccEEEEeeCCChhhhHHHHHHHHHHHhCC-CCEEEEE------CC---------CCC-CHHHHHHHHHHHHHh
Confidence 34566 999998887665655777777776665421 2222111 01 123 57899988765 4
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHHHHHHHH
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVRKAYMDS 156 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~~a~~~~ 156 (192)
+++++- -+ -|.-|++-+++|++.+ ++|++.- .|=.+.++++++++.| +.=||+..... .++.+
T Consensus 212 ~i~~iE---------qP--~~~~d~~~~~~l~~~~---~iPIa~d-E~~~~~~~~~~~i~~~~~d~v~~k~~~~-Git~~ 275 (367)
T 3dg3_A 212 DLLFAE---------EL--CPADDVLSRRRLVGQL---DMPFIAD-ESVPTPADVTREVLGGSATAISIKTART-GFTGS 275 (367)
T ss_dssp CCSCEE---------SC--SCTTSHHHHHHHHHHC---SSCEEEC-TTCSSHHHHHHHHHHTSCSEEEECHHHH-TTHHH
T ss_pred CCCEEE---------CC--CCcccHHHHHHHHHhC---CCCEEec-CCcCCHHHHHHHHHcCCCCEEEeehhhh-hHHHH
Confidence 677664 11 1334788899999887 6998875 4556778899999887 77788876544 44444
Q ss_pred h
Q 029540 157 L 157 (192)
Q Consensus 157 ~ 157 (192)
+
T Consensus 276 ~ 276 (367)
T 3dg3_A 276 T 276 (367)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.63 E-value=2.4 Score=33.99 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=32.0
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCc-cEEeecC
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGV-LLVLHGA 124 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~i-PLVlHGg 124 (192)
+++++.+++.+.|.|.+-+-..+-|. |. .+.++.+.++++++..+..++ ++++|+.
T Consensus 15 ~~~~~~~~~~~~G~~~vEl~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~gl~~~~~h~~ 71 (270)
T 3aam_A 15 GVAGAVEEATALGLTAFQIFAKSPRS-WR--PRALSPAEVEAFRALREASGGLPAVIHAS 71 (270)
T ss_dssp HHHHHHHHHHHHTCSCEEEESSCTTC-CS--CCCCCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCc-Cc--CCCCCHHHHHHHHHHHHHcCCceEEEecC
Confidence 35667777777777777664333332 22 134445556666665555566 6777764
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=7.4 Score=33.62 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=80.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
++.+.||+.+=+--...|+++.++..+++.+....-++.+=.+ . ...| ++++|.+|.++.. +
T Consensus 160 ~~~~~G~~~~KiKvg~~~~~~di~~v~~vr~a~~g~~~~l~vD--------------a-N~~~-~~~~A~~~~~~l~-~- 221 (376)
T 4h2h_A 160 EKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAAD--------------G-NRGW-TTRDALRFSRECP-D- 221 (376)
T ss_dssp HHHHHTCSEEEEECCSSCHHHHHHHHHHHHHHHTTSCCEEEEE--------------C-TTCC-CHHHHHHHHHHCT-T-
T ss_pred HHHhcCceEEEEecCCCCHHHHHHHHHHHHhhccCCeeEEEEe--------------e-ccCC-CHHHHHHHHHHHh-h-
Confidence 4567899999999888899999988888776553222222111 0 0123 7899999987652 1
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
.+.|-. .|--+++-++++++.+ ++|+++ |-|-...++++++++.| +.=+|+.-
T Consensus 222 --------~~~~iE-eP~~~~~~~~~l~~~~---~~pia~-dE~~~~~~~~~~~~~~~~~d~v~~d~ 275 (376)
T 4h2h_A 222 --------IPFVME-QPCNSFEDLEAIRPLC---HHALYM-DEDGTSLNTVITAAATSLVDGFGMKV 275 (376)
T ss_dssp --------SCEEEE-SCSSSHHHHHHHGGGC---CSCEEE-STTCCSHHHHHHHHHTTCCSEECCBH
T ss_pred --------cccccc-CCcchhhhHhhhhhcc---cCcccc-CcccCCHHHHHHHHHhhccCcccccc
Confidence 112322 4656788889998887 699887 88888999999999988 55677753
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=1.2 Score=37.01 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCHHHHHHHhhhhC-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh
Q 029540 65 TDVNQAEEFIDETD-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 65 T~peea~~Fv~~Tg-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
++|+.++.|.+... |++.+ -|+ .-+++++++|++.+. ++|+.+=||-.. .|+++++.+
T Consensus 146 ~~~e~~~~~a~~g~~~l~~~~Vyl~~--~G~----------~~~~~~i~~i~~~~~--~~Pv~vGgGI~s-~e~a~~~~~ 210 (234)
T 2f6u_A 146 IDKELAASYALVGEKLFNLPIIYIEY--SGT----------YGNPELVAEVKKVLD--KARLFYGGGIDS-REKAREMLR 210 (234)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEC--TTS----------CCCHHHHHHHHHHCS--SSEEEEESCCCS-HHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhhcCCCEEEEeC--CCC----------cchHHHHHHHHHhCC--CCCEEEEecCCC-HHHHHHHHh
Confidence 38888999988763 34333 232 227899999998872 499999886654 467999888
Q ss_pred cCCeEeecchHHHHHHHHHhc
Q 029540 138 RGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~ 158 (192)
|..+|-++|.+-....++++
T Consensus 211 -gAd~VIVGSa~v~~~~~~~~ 230 (234)
T 2f6u_A 211 -YADTIIVGNVIYEKGIDAFL 230 (234)
T ss_dssp -HSSEEEECHHHHHHCHHHHH
T ss_pred -CCCEEEEChHHHhCHHHHHH
Confidence 99999999998766555554
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=88.41 E-value=12 Score=32.53 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=79.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.+=+.-...++++.++..+.|.+.. -++.+=.+. + ..+ ++++|.+|+++ -+
T Consensus 158 ~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~--~~~~l~vDa------n---------~~~-~~~~A~~~~~~L~~~~ 219 (385)
T 3i6e_A 158 RLRADGVGLIKLKTGFRDHAFDIMRLELIARDF--PEFRVRVDY------N---------QGL-EIDEAVPRVLDVAQFQ 219 (385)
T ss_dssp HHHHHTCCEEEEECSSSCHHHHHHHHHHHHHHC--TTSEEEEEC------T---------TCC-CGGGHHHHHHHHHTTC
T ss_pred HHHHcCCCEEEEecCCCCHHHHHHHHHHHHHhC--CCCeEEEEC------C---------CCC-CHHHHHHHHHHHHhcC
Confidence 356779999999887778888888888877665 243333221 1 123 46788887654 57
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
++++- -+ -|.-|++-+++|++.+ ++|++.- .|=.+.++++++++.| +.=||+....
T Consensus 220 i~~iE---------qP--~~~~d~~~~~~l~~~~---~iPIa~d-E~~~~~~~~~~~~~~~~~d~v~~k~~~ 276 (385)
T 3i6e_A 220 PDFIE---------QP--VRAHHFELMARLRGLT---DVPLLAD-ESVYGPEDMVRAAHEGICDGVSIKIMK 276 (385)
T ss_dssp CSCEE---------CC--SCTTCHHHHHHHHTTC---SSCEEES-TTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CCEEE---------CC--CCcccHHHHHHHHHhC---CCCEEEe-CCcCCHHHHHHHHHcCCCCEEEecccc
Confidence 77764 11 2345789999999887 6998875 5667788899999877 5667876443
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=88.40 E-value=9 Score=33.46 Aligned_cols=112 Identities=11% Similarity=0.133 Sum_probs=75.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH-hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH-SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~T 77 (192)
++++.||+.+=+.... +.++.++..+.|.+..- ...+.|.+ + ..+ ++++|.+|++ +.
T Consensus 165 ~~~~~G~~~iKlK~g~-~~~~d~~~v~avR~a~g~~~~l~vDa--------N---------~~~-~~~~A~~~~~~L~~~ 225 (392)
T 3ddm_A 165 RKAAEGYRAFKLKVGF-DDARDVRNALHVRELLGAATPLMADA--------N---------QGW-DLPRARQMAQRLGPA 225 (392)
T ss_dssp HHHHHTCCCEEEECSS-CHHHHHHHHHHHHHHHCSSSCEEEEC--------T---------TCC-CHHHHHHHHHHHGGG
T ss_pred HHHHcCCCEEEEecCC-CHHHHHHHHHHHHHhcCCCceEEEeC--------C---------CCC-CHHHHHHHHHHHHHh
Confidence 4567899999888665 67777777666655432 11222221 1 123 5889988855 46
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+++++-= + -|.-| ++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+..
T Consensus 226 ~i~~iEe---------P--~~~~d~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~d~v~~k~ 282 (392)
T 3ddm_A 226 QLDWLEE---------P--LRADRPAAEWAELAQAA---PMPLAG-GENIAGVAAFETALAARSLRVMQPDL 282 (392)
T ss_dssp CCSEEEC---------C--SCTTSCHHHHHHHHHHC---SSCEEE-CTTCCSHHHHHHHHHHTCEEEECCCT
T ss_pred CCCEEEC---------C--CCccchHHHHHHHHHhc---CCCEEe-CCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 8888751 1 23346 88999999887 699887 56667888999999877 66777754
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=88.24 E-value=5.2 Score=34.17 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-------------------------C------CCCCCHHHHHHHHhhh
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPS-------------------------S------GPNLKLDLLKDLHALS 112 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-------------------------~------~p~ld~~~L~~I~~~~ 112 (192)
-++++|+++-+ +.|+|++.+. |. . |.+ + ....+++++++|.+.+
T Consensus 132 v~~~~Ea~~a~-~~Gad~I~v~-g~-~--gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~ 206 (297)
T 4adt_A 132 CTNLGEALRRI-SEGASMIRTK-GE-A--GTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLK 206 (297)
T ss_dssp ESSHHHHHHHH-HHTCSEEEEC-CC-T--TSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHT
T ss_pred eCCHHHHHHHH-hCCCCEEEEC-CC-c--CCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhc
Confidence 47888988755 5689987765 21 1 111 0 0145789999999887
Q ss_pred ccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 113 SKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 113 ~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++|+++=..+|+ ..++++++.+.|+.=|=++|.+.
T Consensus 207 ---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~ 242 (297)
T 4adt_A 207 ---RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIF 242 (297)
T ss_dssp ---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred ---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHH
Confidence 699887677788 88999999999999999999886
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=88.12 E-value=14 Score=32.87 Aligned_cols=117 Identities=9% Similarity=0.062 Sum_probs=76.0
Q ss_pred hhhhcCCCEeEeeCC--------CCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHH
Q 029540 2 EAIVLGFDSLMVDGS--------HLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQA 70 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S--------~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea 70 (192)
++++.||+.+=+... ..|..++++...++++..++. ++.+=.+ .+ ..+ ++++|
T Consensus 156 ~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vD---------an------~~~-t~~~A 219 (433)
T 3rcy_A 156 DCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFG---------TH------GQF-TTAGA 219 (433)
T ss_dssp HHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEEC---------CC------SCB-CHHHH
T ss_pred HHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEe---------CC------CCC-CHHHH
Confidence 457789999998743 235445555555555555531 2222211 10 123 58899
Q ss_pred HHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 71 EEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 71 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
.+|++ +.+++++-- + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+.
T Consensus 220 ~~~~~~Le~~~i~~iEe---------P--~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~g~~D~v~~d 284 (433)
T 3rcy_A 220 IRLGQAIEPYSPLWYEE---------P--VPPDNVGAMAQVARAV---RIPVAT-GERLTTKAEFAPVLREGAAAILQPA 284 (433)
T ss_dssp HHHHHHHGGGCCSEEEC---------C--SCTTCHHHHHHHHHHS---SSCEEE-CTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHhhhcCCCEEEC---------C--CChhhHHHHHHHHhcc---CCCEEe-cCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 88855 458888741 1 1334899999999988 699876 66667888999999887 7777876
Q ss_pred hHH
Q 029540 147 TEV 149 (192)
Q Consensus 147 T~l 149 (192)
-.-
T Consensus 285 ~~~ 287 (433)
T 3rcy_A 285 LGR 287 (433)
T ss_dssp HHH
T ss_pred chh
Confidence 443
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=88.05 E-value=7 Score=34.12 Aligned_cols=114 Identities=12% Similarity=-0.003 Sum_probs=75.7
Q ss_pred hhhhcCCCEeEee--C-CCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh--
Q 029540 2 EAIVLGFDSLMVD--G-SHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE-- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D--~-S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~-- 76 (192)
++++.||+.+=++ | +..+.++.++..+.|-+..-+ ++.+=.+ . ...+|++++|.+|+++
T Consensus 162 ~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~-d~~l~vD------a---------n~~~~~~~~A~~~~~~L~ 225 (394)
T 3mqt_A 162 KAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGW-DMDMMVD------C---------LYRWTDWQKARWTFRQLE 225 (394)
T ss_dssp HHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCS-SSEEEEE------C---------TTCCSCHHHHHHHHHHTG
T ss_pred HHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCC-CCeEEEE------C---------CCCCCCHHHHHHHHHHHh
Confidence 3567899998885 2 114577777777776655421 2322211 0 1246789999998765
Q ss_pred -hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 77 -TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 77 -TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
.|++++-- + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+.
T Consensus 226 ~~~i~~iEe---------P--~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~~~d~v~~k 282 (394)
T 3mqt_A 226 DIDLYFIEA---------C--LQHDDLIGHQKLAAAI---NTRLCG-AEMSTTRFEAQEWLEKTGISVVQSD 282 (394)
T ss_dssp GGCCSEEES---------C--SCTTCHHHHHHHHHHS---SSEEEE-CTTCCHHHHHHHHHHHHCCSEECCC
T ss_pred hcCCeEEEC---------C--CCcccHHHHHHHHhhC---CCCEEe-CCCcCCHHHHHHHHHcCCCCeEecC
Confidence 58888741 1 1334899999999988 699876 55666778899999876 6667775
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=88.02 E-value=1.1 Score=36.72 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=67.8
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh-ccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS-SKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~-~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..+.+.+++.+.+++.|+|+|=+=|+- |.|-++ -.+-.+.+++|++.+ . ++|+..|==.-.|++.++.+.+.|+
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmD--g~Fvpn-~~~G~~~v~~ir~~~~~--~~~~dvhLmv~~p~~~i~~~~~aGa 88 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMD--GHFVPN-ITFGHPVVESLRKQLGQ--DPFFDMHMMVSKPEQWVKPMAVAGA 88 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEB--SSSSSC-BCBCHHHHHHHHHHHCS--SSCEEEEEECSCGGGGHHHHHHHTC
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecC--CCcCcc-cccCHHHHHHHHHhhCC--CCcEEEEEEeCCHHHHHHHHHHcCC
Confidence 357788999999999999999998876 446542 445678899999884 2 5899988888889999999999999
Q ss_pred eEeecchH
Q 029540 141 RKFNVNTE 148 (192)
Q Consensus 141 ~KINi~T~ 148 (192)
.-|.+.-+
T Consensus 89 d~itvH~E 96 (228)
T 3ovp_A 89 NQYTFHLE 96 (228)
T ss_dssp SEEEEEGG
T ss_pred CEEEEccC
Confidence 99999776
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=87.94 E-value=1.7 Score=36.71 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..||.+|.+.+.+.|||-+== ||.-+ ...-.+++|+++.+.. + .+.+=-|+|+..+.+.+.+..|+.-+
T Consensus 127 ~~d~~~ale~L~~lG~~rILT-----SG~~~--~a~~g~~~L~~Lv~~a---~-~i~Im~GgGv~~~Ni~~l~~tGv~e~ 195 (256)
T 1twd_A 127 CANPLYTLNNLAELGIARVLT-----SGQKS--DALQGLSKIMELIAHR---D-APIIMAGAGVRAENLHHFLDAGVLEV 195 (256)
T ss_dssp CSCHHHHHHHHHHHTCCEEEE-----CTTSS--STTTTHHHHHHHHTSS---S-CCEEEEESSCCTTTHHHHHHHTCSEE
T ss_pred cCCHHHHHHHHHHcCCCEEEC-----CCCCC--CHHHHHHHHHHHHHhh---C-CcEEEecCCcCHHHHHHHHHcCCCeE
Confidence 579999999999999997652 34322 2455788888887764 3 45555567999999999989999999
Q ss_pred ecc
Q 029540 144 NVN 146 (192)
Q Consensus 144 Ni~ 146 (192)
..+
T Consensus 196 H~S 198 (256)
T 1twd_A 196 HSS 198 (256)
T ss_dssp EEC
T ss_pred eEC
Confidence 965
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=87.85 E-value=9.3 Score=33.44 Aligned_cols=122 Identities=12% Similarity=0.025 Sum_probs=76.9
Q ss_pred hhhhcCCCEeEeeCCCCC--------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHLP--------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~--------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
++++.||+.+=+.-...+ +++.++..+.|-+..- ++.+=.+ . +.--++++|.+|
T Consensus 175 ~~~~~Gf~~iKlKvg~~~~~~~~~~~~~~di~~v~avR~a~~--d~~L~vD------a----------N~~w~~~~A~~~ 236 (393)
T 3u9i_A 175 AIVARGVTTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAP--TARLILD------G----------NCGYTAPDALRL 236 (393)
T ss_dssp HHHTTTCCEEEEECC-------CHHHHHHHHHHHHHHHHHST--TSEEEEE------C----------CSCCCHHHHHHH
T ss_pred HHHHcCCCeEEEEeCCCcccccccccHHHHHHHHHHHHHHCC--CCeEEEE------c----------cCCCCHHHHHHH
Confidence 356789999988876655 6777776666655431 1111110 1 122368999999
Q ss_pred hhhh-----CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 74 IDET-----DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 74 v~~T-----gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+++. ++.++= ..-|.-|++-+++|++.+ ++|+++ |-|=.+..+++++++.| +.=||+.-
T Consensus 237 ~~~L~~~~~~i~~iE-----------eP~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~d~i~~k~ 301 (393)
T 3u9i_A 237 LDMLGVHGIVPALFE-----------QPVAKDDEEGLRRLTATR---RVPVAA-DESVASATDAARLARNAAVDVLNIKL 301 (393)
T ss_dssp HHTTTTTTCCCSEEE-----------CCSCTTCTTHHHHHHHTC---SSCEEE-STTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred HHHHhhCCCCeEEEE-----------CCCCCCcHHHHHHHHhhC---CCcEEe-CCcCCCHHHHHHHHHcCCCCEEEecc
Confidence 8765 333332 101334888899999887 699887 77778889999999876 77788875
Q ss_pred HHHHHHHHHh
Q 029540 148 EVRKAYMDSL 157 (192)
Q Consensus 148 ~l~~a~~~~~ 157 (192)
.. -.++.++
T Consensus 302 ~~-GGit~~~ 310 (393)
T 3u9i_A 302 MK-CGIVEAL 310 (393)
T ss_dssp HH-HCHHHHH
T ss_pred cc-cCHHHHH
Confidence 54 3344433
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=87.77 E-value=10 Score=32.73 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=77.6
Q ss_pred hhhhcCCCEeEeeCCCC--CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---
Q 029540 2 EAIVLGFDSLMVDGSHL--PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE--- 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~--- 76 (192)
++++.||+.+=+...+. +.++.++..+.|-+..-+ ++.+=.+ . ...+||+++|.+|+++
T Consensus 156 ~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~-~~~l~vD------a---------n~~~~d~~~A~~~~~~l~~ 219 (374)
T 3sjn_A 156 GLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGP-EMEVQID------L---------ASKWHTCGHSAMMAKRLEE 219 (374)
T ss_dssp HHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCS-SSEEEEE------C---------TTTTCSHHHHHHHHHHSGG
T ss_pred HHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCC-CCeEEEE------C---------CCCCCCHHHHHHHHHHhhh
Confidence 46778999999987653 567777777666554321 3333221 0 1246779999998654
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
-|++++-= + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+..
T Consensus 220 ~~i~~iEq---------P--~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~~~d~v~~k~ 276 (374)
T 3sjn_A 220 FNLNWIEE---------P--VLADSLISYEKLSRQV---SQKIAG-GESLTTRYEFQEFITKSNADIVQPDI 276 (374)
T ss_dssp GCCSEEEC---------S--SCTTCHHHHHHHHHHC---SSEEEE-CTTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred cCceEEEC---------C--CCcccHHHHHHHHhhC---CCCEEe-CCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 57888741 1 1334899999999887 699886 55556788899999765 66677654
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.72 E-value=0.72 Score=38.47 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||.+..+..++-|.|.|-+. +. + -+++.+++|.+.+ ++|+-+-||-- .+++++.+ .|+.||
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~----------~-~n~~~i~~i~~~~---~~pv~vgGGir--~~~~~~~l-~Ga~~V 100 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLG----------P-NNDDAAREALQES---PQFLQVGGGIN--DTNCLEWL-KWASKV 100 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEES----------S-SCHHHHHHHHHHS---TTTSEEESSCC--TTTHHHHT-TTCSCE
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCC----------C-CCHHHHHHHHhcC---CceEEEeCCCC--HHHHHHHh-cCCCEE
Confidence 479887676777788876652 11 1 3688889998877 69999966554 44999999 999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|.+.
T Consensus 101 iigs~a~ 107 (260)
T 2agk_A 101 IVTSWLF 107 (260)
T ss_dssp EECGGGB
T ss_pred EECcHHH
Confidence 9999853
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=87.66 E-value=12 Score=31.57 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=47.5
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
+-|.|++-+ || .-+.+.+++|.+.+ ++|+.+-++++.+. +++.-++|++-|=+...+..+.+.
T Consensus 179 eAGAd~i~~-----e~-------~~~~~~~~~i~~~~---~~P~n~~~~~~~~~--~~eL~~lGv~~v~~~~~~~raa~~ 241 (275)
T 2ze3_A 179 DAGADGIFV-----PL-------ALQSQDIRALADAL---RVPLNVMAFPGSPV--PRALLDAGAARVSFGQSLMLATLG 241 (275)
T ss_dssp HTTCSEEEC-----TT-------CCCHHHHHHHHHHC---SSCEEEECCTTSCC--HHHHHHTTCSEEECTTHHHHHHHH
T ss_pred HCCCCEEEE-----CC-------CCCHHHHHHHHHhc---CCCEEEecCCCCCC--HHHHHHcCCcEEEEChHHHHHHHH
Confidence 568888764 21 12567788888877 69987776554332 466677899999999998888877
Q ss_pred Hhc
Q 029540 156 SLS 158 (192)
Q Consensus 156 ~~~ 158 (192)
+++
T Consensus 242 a~~ 244 (275)
T 2ze3_A 242 LVQ 244 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=87.45 E-value=4.8 Score=34.93 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=71.4
Q ss_pred hhhhcCCCEeEeeCCC---------C----CHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccCC
Q 029540 2 EAIVLGFDSLMVDGSH---------L----PFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~---------l----~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~T 65 (192)
++.+.||+.|=+...+ . +.+.+++...++++..++ . ++.+=.+. + ..|
T Consensus 147 ~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~------n---------~~~- 210 (392)
T 2poz_A 147 RPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDL------S---------GGL- 210 (392)
T ss_dssp HHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEC------T---------TCS-
T ss_pred HHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEEC------C---------CCC-
Confidence 5678899999987652 1 123455555555555543 1 22222111 0 123
Q ss_pred CHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-Ce
Q 029540 66 DVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VR 141 (192)
Q Consensus 66 ~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~ 141 (192)
++++|.+|+++ -+++++-- + -|.-|++-+++|++.+ ++|++.=+ +=.+.++++++++.| +.
T Consensus 211 ~~~~a~~~~~~l~~~~i~~iE~----------P-~~~~~~~~~~~l~~~~---~ipIa~dE-~~~~~~~~~~~i~~~~~d 275 (392)
T 2poz_A 211 TTDETIRFCRKIGELDICFVEE----------P-CDPFDNGALKVISEQI---PLPIAVGE-RVYTRFGFRKIFELQACG 275 (392)
T ss_dssp CHHHHHHHHHHHGGGCEEEEEC----------C-SCTTCHHHHHHHHHHC---SSCEEECT-TCCHHHHHHHHHTTTCCS
T ss_pred CHHHHHHHHHHHHhcCCCEEEC----------C-CCcccHHHHHHHHhhC---CCCEEecC-CcCCHHHHHHHHHcCCCC
Confidence 58899888655 57777641 1 2345899999999887 69988754 445678999999887 55
Q ss_pred Eeecc
Q 029540 142 KFNVN 146 (192)
Q Consensus 142 KINi~ 146 (192)
=||+.
T Consensus 276 ~v~ik 280 (392)
T 2poz_A 276 IIQPD 280 (392)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 56663
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.40 E-value=0.89 Score=39.15 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=72.4
Q ss_pred cCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCC----CCCHHHHHHHHhhhccCCccEEeecC
Q 029540 63 KLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGP----NLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 63 ~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p----~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
+|.+|+...++++ +.|+|.+-+. ...|.+-+ | ++=+..+++|-+.++..++|+++|.+
T Consensus 177 ~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~--D~~~~~ls--p~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~ 252 (359)
T 2inf_A 177 MYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQIF--DSWVGALN--QADYRTYIKPVMNRIFSELAKENVPLIMFGV 252 (359)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE--CTTGGGSC--HHHHHHHTHHHHHHHHHHHGGGCSCEEEECT
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe--CCccccCC--HHHHHHHhHHHHHHHHHHHHHcCCcEEEEcC
Confidence 6789997666654 4799976654 33333221 2 22234445665555444699999965
Q ss_pred CCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 125 SGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 125 SG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
|. ...+....+.|+.-+|+....-..-.+.... .+.|+ .++....+.+++.+++.++. |.
T Consensus 253 -G~-~~~l~~l~~~g~d~~~~d~~~d~~~~~~~g~~~~l~Gnldp-~~l~~t~e~I~~~v~~~l~~-~~ 317 (359)
T 2inf_A 253 -GA-SHLAGDWHDLPLDVVGLDWRLGIDEARSKGITKTVQGNLDP-SILLAPWEVIEQKTKEILDQ-GM 317 (359)
T ss_dssp -TC-GGGHHHHHTSSCSEEECCTTSCHHHHHHTTCCSEEECCBCG-GGGGSCHHHHHHHHHHHHHH-HT
T ss_pred -Cc-HHHHHHHHHhCCCEEEeCCCCCHHHHHHcCCCEEEEecCCh-HHhcCCHHHHHHHHHHHHHh-CC
Confidence 54 5577788899999999974322222222211 23366 34455678888888888887 54
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=87.25 E-value=2.7 Score=34.98 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=68.6
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
...+.+.++..+.+++.|+|+|=+=|.- |.|-++ -.+-++.++.|++.+. ++||..|==.--|+..++.+++.|.
T Consensus 36 saD~~~L~~~i~~l~~~G~d~lHvDVmD--g~FVpn-it~G~~~v~~lr~~~p--~~~ldvHLmv~~p~~~i~~~~~aGA 110 (246)
T 3inp_A 36 SADLARLGDDVKAVLAAGADNIHFDVMD--NHYVPN-LTFGPMVLKALRDYGI--TAGMDVHLMVKPVDALIESFAKAGA 110 (246)
T ss_dssp GSCGGGHHHHHHHHHHTTCCCEEEEEEB--SSSSSC-BCCCHHHHHHHHHHTC--CSCEEEEEECSSCHHHHHHHHHHTC
T ss_pred cCChhhHHHHHHHHHHcCCCEEEEEecC--CCcCcc-hhcCHHHHHHHHHhCC--CCeEEEEEeeCCHHHHHHHHHHcCC
Confidence 3457788999999999999999998876 446432 4456788999998872 4899999999999999999999999
Q ss_pred eEeecchH
Q 029540 141 RKFNVNTE 148 (192)
Q Consensus 141 ~KINi~T~ 148 (192)
.-|.+.-+
T Consensus 111 d~itvH~E 118 (246)
T 3inp_A 111 TSIVFHPE 118 (246)
T ss_dssp SEEEECGG
T ss_pred CEEEEccc
Confidence 99998765
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=87.16 E-value=1.4 Score=38.05 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=55.1
Q ss_pred CCHHHHHHH---hhhhCCcEEEEecCc----CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHH
Q 029540 65 TDVNQAEEF---IDETDIDALAVCIGN----VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGC 135 (192)
Q Consensus 65 T~peea~~F---v~~TgvD~LAvaiGt----~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~ 135 (192)
-++++-.++ +.+.|+|.+-+..|+ +.-.|-. ...-+++++++|++... ++|+++.+ +.+. .+++++|
T Consensus 27 ~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~-~~~~~~e~l~~i~~~~~--~~~i~~l~~p~~~~-~~~i~~a 102 (345)
T 1nvm_A 27 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGF-GRHTDLEYIEAVAGEIS--HAQIATLLLPGIGS-VHDLKNA 102 (345)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBC-CSSCHHHHHHHHHTTCS--SSEEEEEECBTTBC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccC-CCCCHHHHHHHHHhhCC--CCEEEEEecCCccc-HHHHHHH
Confidence 455665554 456899999997332 2212211 12347899999987653 68998885 3343 6789999
Q ss_pred HhcCCeEeecchHH
Q 029540 136 IERGVRKFNVNTEV 149 (192)
Q Consensus 136 i~~Gi~KINi~T~l 149 (192)
.++|+..|.|.+.+
T Consensus 103 ~~aGvd~v~I~~~~ 116 (345)
T 1nvm_A 103 YQAGARVVRVATHC 116 (345)
T ss_dssp HHHTCCEEEEEEET
T ss_pred HhCCcCEEEEEEec
Confidence 99999999998755
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=87.14 E-value=2 Score=35.49 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=76.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|-+-|+--+ .+.+++++|+.+|+.+=. | ..+|.|+.+ ..+-|+|.
T Consensus 101 ~Ai~AGA~fIvsP~----------~~~~vi~~~~~~gi~~ip------G-------------v~TptEi~~-A~~~Gad~ 150 (232)
T 4e38_A 101 AAKEAGATFVVSPG----------FNPNTVRACQEIGIDIVP------G-------------VNNPSTVEA-ALEMGLTT 150 (232)
T ss_dssp HHHHHTCSEEECSS----------CCHHHHHHHHHHTCEEEC------E-------------ECSHHHHHH-HHHTTCCE
T ss_pred HHHHcCCCEEEeCC----------CCHHHHHHHHHcCCCEEc------C-------------CCCHHHHHH-HHHcCCCE
Confidence 58889988887543 245788899988765421 1 247888888 45789999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-+ |+.. +.-.++.|+.|+.... ++|++==|| ++.++++...+.|..=+=++|.+.
T Consensus 151 vK~--------FPa~-~~gG~~~lkal~~p~p--~ip~~ptGG--I~~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 151 LKF--------FPAE-ASGGISMVKSLVGPYG--DIRLMPTGG--ITPSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp EEE--------CSTT-TTTHHHHHHHHHTTCT--TCEEEEBSS--CCTTTHHHHHTSTTBCCEEECGGG
T ss_pred EEE--------CcCc-cccCHHHHHHHHHHhc--CCCeeeEcC--CCHHHHHHHHHCCCeEEEECchhc
Confidence 976 5431 2124688999988663 699998885 456889999999976677788874
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.99 E-value=13 Score=32.25 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=75.7
Q ss_pred hhhc-CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 3 AIVL-GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 3 ai~~-GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+++. ||+.+=+.-...+.++.++..+.|.+..-. ++.+=.+. + ..+ ++++|.+|++ +.|
T Consensus 159 ~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~-~~~l~vDa------n---------~~~-~~~~A~~~~~~l~~~~ 221 (383)
T 3i4k_A 159 RIEEFGNRSFKLKMGAGDPAEDTRRVAELAREVGD-RVSLRIDI------N---------ARW-DRRTALHYLPILAEAG 221 (383)
T ss_dssp HHHHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTT-TSEEEEEC------T---------TCS-CHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCC-CCEEEEEC------C---------CCC-CHHHHHHHHHHHHhcC
Confidence 4555 999998887666778888776666544321 22222110 1 123 4789988865 468
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
++++- -+ -|.-|++-+++|++.+ ++|+++- .|=...++++++++.| +.=||+..
T Consensus 222 i~~iE---------qP--~~~~d~~~~~~l~~~~---~iPIa~d-E~~~~~~~~~~~i~~~~~d~v~~k~ 276 (383)
T 3i4k_A 222 VELFE---------QP--TPADDLETLREITRRT---NVSVMAD-ESVWTPAEALAVVKAQAADVIALKT 276 (383)
T ss_dssp CCEEE---------SC--SCTTCHHHHHHHHHHH---CCEEEES-TTCSSHHHHHHHHHHTCCSEEEECT
T ss_pred CCEEE---------CC--CChhhHHHHHHHHhhC---CCCEEec-CccCCHHHHHHHHHcCCCCEEEEcc
Confidence 88885 11 2445888999999988 6998875 5566788899999877 66777763
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=86.88 E-value=15 Score=32.27 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=76.6
Q ss_pred hhhc-CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 3 AIVL-GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 3 ai~~-GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+++. ||+.+=+.-. .+.++.++..+.|.+.. -++.+=.+ .+ ..+ ++++|.+|++ +-+
T Consensus 179 ~~~~~G~~~~K~KvG-~~~~~d~~~v~avR~~~--~~~~l~vD------aN---------~~w-~~~~A~~~~~~l~~~~ 239 (398)
T 4dye_A 179 VVEEGGFDAVKLKGT-TDCAGDVAILRAVREAL--PGVNLRVD------PN---------AAW-SVPDSVRAGIALEELD 239 (398)
T ss_dssp HHHHHCCSEEEEECC-SCHHHHHHHHHHHHHHC--TTSEEEEE------CT---------TCS-CHHHHHHHHHHHGGGC
T ss_pred HHHhcCCCEEEEecC-CCHHHHHHHHHHHHHhC--CCCeEEee------CC---------CCC-CHHHHHHHHHHHhhcC
Confidence 4566 9999888765 56788888777776665 23333222 11 123 5789998866 457
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
++++- .|--|++-+++|++.+ ++|+++ |.|=.+.++++++++.| +.=||+....
T Consensus 240 i~~iE-------------qP~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 294 (398)
T 4dye_A 240 LEYLE-------------DPCVGIEGMAQVKAKV---RIPLCT-NMCVVRFEDFAPAMRLNAVDVIHGDVYK 294 (398)
T ss_dssp CSEEE-------------CCSSHHHHHHHHHHHC---CSCEEE-SSSCCSGGGHHHHHHTTCCSEEEECHHH
T ss_pred CCEEc-------------CCCCCHHHHHHHHhhC---CCCEEe-CCcCCCHHHHHHHHHhCCCCEEEeCccc
Confidence 77663 2333899999999887 699876 66767788899999877 7777876443
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=86.74 E-value=11 Score=32.86 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=78.9
Q ss_pred hhhhcCCCEeE---eeCCCCCHH---HHHHHHHHHHHHHHhCCCeEEEec---cccccCCCCCccccccccCCCHHH---
Q 029540 2 EAIVLGFDSLM---VDGSHLPFK---DNISHTKYISFLAHSKGMLVEAEL---GRLSGTEDGLTVEDYEAKLTDVNQ--- 69 (192)
Q Consensus 2 ~ai~~GFtSVM---~D~S~l~~e---eNi~~Tk~vv~~Ah~~gv~VEaEl---G~i~g~e~~~~~~~~~~~~T~pee--- 69 (192)
+|+++|-+-|- +=+|.-+-+ ++++...+|.+-|++.|+++=.|+ +.- ..+... .+..--+|+-
T Consensus 118 ~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~--~~~~~~---~~~a~~~p~~V~~ 192 (332)
T 3iv3_A 118 RLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDET--ISNNSS---VEFAKVKVHKVND 192 (332)
T ss_dssp HHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTT--BSCTTS---HHHHTTHHHHHHH
T ss_pred HHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCC--CCCCcc---hhhhccCHHHHHH
Confidence 46777766553 234455543 789999999999999999999997 431 111110 0000113433
Q ss_pred -HHHHh-hhhCCcEEEEec-CcCC---CCCCCCCCCCCHH-HHHHHHhhhccCCccEE-eecCCCCCHHHHHH----HHh
Q 029540 70 -AEEFI-DETDIDALAVCI-GNVH---GKYPSSGPNLKLD-LLKDLHALSSKKGVLLV-LHGASGLSAELIKG----CIE 137 (192)
Q Consensus 70 -a~~Fv-~~TgvD~LAvai-Gt~H---G~y~~~~p~ld~~-~L~~I~~~~~~~~iPLV-lHGgSG~~~e~~~~----~i~ 137 (192)
++.|. .+-|+|++=+-+ ||.. |.=++ .+..+-+ ..+.+++.+...++|.| |=||. ++++|.+ |++
T Consensus 193 a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~-~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~--~~~~fl~~v~~A~~ 269 (332)
T 3iv3_A 193 AMKVFSAERFGIDVLKVEVPVNMVYVEGFAEG-EVVYSKEEAAQAFREQEASTDLPYIYLSAGV--SAELFQETLVFAHK 269 (332)
T ss_dssp HHHHHTSGGGCCSEEEECCSSCGGGBTTTCSS-CCCBCHHHHHHHHHHHHHTCSSCEEEECTTC--CHHHHHHHHHHHHH
T ss_pred HHHHHhhcCcCCcEEEEecCCChhhhcccccc-cccccHHHHHHHHHHHHhcCCCCEEEECCCC--CHHHHHHHHHHHHH
Confidence 44443 356999998862 2221 11011 1222222 22334444443479965 77764 7777665 567
Q ss_pred cCC--eEeecchHHH
Q 029540 138 RGV--RKFNVNTEVR 150 (192)
Q Consensus 138 ~Gi--~KINi~T~l~ 150 (192)
.|. +=+=++-.+.
T Consensus 270 aGa~f~Gv~~GRnvw 284 (332)
T 3iv3_A 270 AGAKFNGVLCGRATW 284 (332)
T ss_dssp HTCCCCEEEECHHHH
T ss_pred cCCCcceEEeeHHHH
Confidence 887 6776665553
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=86.55 E-value=9.8 Score=32.72 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=72.4
Q ss_pred cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hCCcE
Q 029540 6 LGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TDIDA 81 (192)
Q Consensus 6 ~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---TgvD~ 81 (192)
.||+.+=+--...+.++.++..+.|.+..-. ..+.|.+ + ..+ ++++|.+|+++ .++++
T Consensus 157 ~G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDa--------n---------~~~-~~~~a~~~~~~l~~~~i~~ 218 (370)
T 1chr_A 157 RRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDV--------N---------QAW-DEQVASVYIPELEALGVEL 218 (370)
T ss_dssp TCCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEEC--------T---------TCC-CTTHHHHHTHHHHTTTEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEEC--------C---------CCC-CHHHHHHHHHHHHhcCCCE
Confidence 6888887776666677777777666554322 1222211 0 123 36788888654 57777
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
+- -+ -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+.
T Consensus 219 iE---------qP--~~~~~~~~~~~l~~~~---~iPia~-dE~~~~~~~~~~~~~~~~~d~v~~k 269 (370)
T 1chr_A 219 IE---------QP--VGRENTQALRRLSDNN---RVAIMA-DESLSTLASAFDLARDRSVDVFSLK 269 (370)
T ss_dssp EE---------CC--SCTTCHHHHHHHHHHS---CSEEEE-SSSCCSHHHHHHHHTTTSCSEEEEC
T ss_pred EE---------CC--CCcccHHHHHHHHhhC---CCCEEe-CCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 74 11 2445888899999887 699887 66667788999999876 6677775
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=86.53 E-value=2.9 Score=33.46 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCC-CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNL-KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l-d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.+|+|+.+-. +-|+|.+.+ |+. +.+ -++.|+.++.... ++|++-=| |+..+++...++.|..=+
T Consensus 112 ~t~~e~~~A~-~~Gad~v~~--------fpa--~~~gG~~~lk~l~~~~~--~ipvvaiG--GI~~~n~~~~l~aGa~~v 176 (207)
T 2yw3_A 112 LTPTEVERAL-ALGLSALKF--------FPA--EPFQGVRVLRAYAEVFP--EVRFLPTG--GIKEEHLPHYAALPNLLA 176 (207)
T ss_dssp CSHHHHHHHH-HTTCCEEEE--------TTT--TTTTHHHHHHHHHHHCT--TCEEEEBS--SCCGGGHHHHHTCSSBSC
T ss_pred CCHHHHHHHH-HCCCCEEEE--------ecC--ccccCHHHHHHHHhhCC--CCcEEEeC--CCCHHHHHHHHhCCCcEE
Confidence 4699987744 669999987 332 222 4677888888763 59999888 566799999999999999
Q ss_pred ecchHHHH
Q 029540 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
=++|.+..
T Consensus 177 avgSai~~ 184 (207)
T 2yw3_A 177 VGGSWLLQ 184 (207)
T ss_dssp EEESGGGS
T ss_pred EEehhhhC
Confidence 99998853
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=86.32 E-value=15 Score=31.60 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=44.3
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEE---ee-cCCC-CCHHHHHHHHhcCCeEeecchHHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV---LH-GASG-LSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLV---lH-GgSG-~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|.|++-+ || + -+.+.+++|.+.+ ++|++ +- |.+. ++ .++.-++|++-|=+...+.
T Consensus 200 eAGAd~i~~-----e~------~-~~~e~~~~i~~~l---~~P~lan~~~~g~~~~~~---~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 200 EAGADATFV-----EA------P-ANVDELKEVSAKT---KGLRIANMIEGGKTPLHT---PEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp HTTCSEEEE-----CC------C-CSHHHHHHHHHHS---CSEEEEEECTTSSSCCCC---HHHHHHHTCCEEEECSHHH
T ss_pred HcCCCEEEE-----cC------C-CCHHHHHHHHHhc---CCCEEEEeccCCCCCCCC---HHHHHHcCCeEEEEchHHH
Confidence 568887765 11 1 2677788888877 69983 32 3343 44 4455567999999999888
Q ss_pred HHHHHHhc
Q 029540 151 KAYMDSLS 158 (192)
Q Consensus 151 ~a~~~~~~ 158 (192)
.+.+.+++
T Consensus 262 raa~~a~~ 269 (318)
T 1zlp_A 262 YATARALV 269 (318)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777653
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=86.28 E-value=16 Score=31.83 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=77.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh---C
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---D 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---g 78 (192)
++++.||+.+=+.-...++++.++..+.|.+..-.-++.+=.+ .+.--++++|.+|+++. +
T Consensus 174 ~~~~~G~~~~KlKvg~~~~~~d~~~v~avR~a~gg~~~~L~vD----------------aN~~w~~~~A~~~~~~L~~~~ 237 (391)
T 4e8g_A 174 EKVAEGFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVD----------------GNRSLPSRDALRLSRECPEIP 237 (391)
T ss_dssp HHHHTTCSEEEEECCSSCHHHHHHHHHHHHHHHTTTTCEEEEE----------------CTTCCCHHHHHHHHHHCTTSC
T ss_pred HHHHcCCcEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCeEEEe----------------CCCCCCHHHHHHHHHHHhhcC
Confidence 3567899999888776678888887777655442112222111 01123589999998764 3
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
+ ++ . .|.-|++-++++++.+ ++|+++ |-|=.+..+++++++.| +.=||+....
T Consensus 238 i-~i------------E-eP~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~~~~~a~d~v~ik~~~ 291 (391)
T 4e8g_A 238 F-VL------------E-QPCNTLEEIAAIRGRV---QHGIYL-DESGEDLSTVIRAAGQGLCDGFGMKLTR 291 (391)
T ss_dssp E-EE------------E-SCSSSHHHHHHHGGGC---CSCEEE-STTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred e-EE------------e-cCCccHHHHHHHHhhC---CCCEEe-CCCCCCHHHHHHHHHcCCCCEEEeCccc
Confidence 3 33 2 3555889899998887 699887 77777889999999877 6677886544
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=86.27 E-value=8 Score=33.76 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=79.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh----
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---- 77 (192)
++++.||+.+=+.-...++++.++..+.|.+..- ++. +. .+ .+.--++++|.+|+++.
T Consensus 154 ~~~~~G~~~iKlKvg~~~~~~d~~~v~avR~~~~--~~~-------L~-------vD--aN~~w~~~~A~~~~~~L~~~~ 215 (389)
T 3s5s_A 154 RAAAMGFRALKVKVGGRLAASDPARIEAIHAAAP--GAS-------LI-------LD--GNGGLTAGEALALVAHARRLG 215 (389)
T ss_dssp HHHHHTCCEEEEECCGGGTTTHHHHHHHHHHHCT--TCE-------EE-------EE--CTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCeEEEEecCCChHHHHHHHHHHHHhCC--CCe-------EE-------EE--CCCCCCHHHHHHHHHHHhhCC
Confidence 3456788888887766667777777666655431 111 10 00 11123689999998765
Q ss_pred -CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHHHHHHH
Q 029540 78 -DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVRKAYMD 155 (192)
Q Consensus 78 -gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~~a~~~ 155 (192)
++.++= ..-|.-|++-++++++.+ ++|+++ |-|=.+..+++++++.| +.=||+.... -.++.
T Consensus 216 ~~i~~iE-----------eP~~~~d~~~~~~l~~~~---~iPIa~-dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~ 279 (389)
T 3s5s_A 216 ADVALLE-----------QPVPRDDWDGMKEVTRRA---GVDVAA-DESAASAEDVLRVAAERAATVVNIKLMK-GGIAE 279 (389)
T ss_dssp CEEEEEE-----------CCSCTTCHHHHHHHHHHS---SSCEEE-STTCSSHHHHHHHHHTTCCSEEEECHHH-HHHHH
T ss_pred CCeEEEE-----------CCCCcccHHHHHHHHhhC---CCCEEE-CCCCCCHHHHHHHHHcCCCCEEEecCCC-CCHHH
Confidence 223221 112334899999999887 699887 77878889999999877 6778887655 44544
Q ss_pred Hh
Q 029540 156 SL 157 (192)
Q Consensus 156 ~~ 157 (192)
++
T Consensus 280 ~~ 281 (389)
T 3s5s_A 280 AL 281 (389)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.22 E-value=2.2 Score=33.99 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=67.4
Q ss_pred hhhhcCCCEeEeeCC--CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029540 2 EAIVLGFDSLMVDGS--HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S--~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.|.++|.+.|-+-+. ..+ + ..++++.+++.|+. +|..-. .-|+.+..+.+ ..++
T Consensus 86 ~~~~~Gad~v~vh~~~~~~~--~----~~~~~~~~~~~g~~----ig~~~~------------p~t~~e~~~~~--~~~~ 141 (230)
T 1rpx_A 86 DFIKAGADIVSVHCEQSSTI--H----LHRTINQIKSLGAK----AGVVLN------------PGTPLTAIEYV--LDAV 141 (230)
T ss_dssp HHHHTTCSEEEEECSTTTCS--C----HHHHHHHHHHTTSE----EEEEEC------------TTCCGGGGTTT--TTTC
T ss_pred HHHHcCCCEEEEEecCccch--h----HHHHHHHHHHcCCc----EEEEeC------------CCCCHHHHHHH--HhhC
Confidence 466778887776665 322 1 23556666666542 332210 00222222222 2468
Q ss_pred cEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 80 DALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++- +.+++..+.+ +..+ ++.+++|++.+.. .++|+++=|| +..+++.++++.|..=+=++|.+.
T Consensus 142 d~vl--~~~~~pg~~g--~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GG--I~~~n~~~~~~aGad~vvvgSaI~ 211 (230)
T 1rpx_A 142 DLVL--IMSVNPGFGG--QSFIESQVKKISDLRKICAERGLNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVF 211 (230)
T ss_dssp SEEE--EESSCTTCSS--CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESS--CCTTTHHHHHHHTCCEEEESHHHH
T ss_pred CEEE--EEEEcCCCCC--ccccHHHHHHHHHHHHHHHhcCCCceEEEECC--CCHHHHHHHHHcCCCEEEEChhhh
Confidence 8663 3334322332 2333 4555666665521 1589999895 556889999999999999999885
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=15 Score=31.89 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=77.0
Q ss_pred hhhhc-CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVL-GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~-GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++. ||+.+=+.-...++++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|+++ .
T Consensus 177 ~~~~~~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~-~~~l~vD------aN---------~~~-~~~~A~~~~~~l~~~ 239 (383)
T 3toy_A 177 TACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGP-DIALMLD------FN---------QSL-DPAEATRRIARLADY 239 (383)
T ss_dssp HHHHTSCCCEEEEECCSSCHHHHHHHHHHHHHHHCT-TSEEEEE------CT---------TCS-CHHHHHHHHHHHGGG
T ss_pred HHHHccCCcEEEEecCCCCHHHHHHHHHHHHHHhCC-CCeEEEe------CC---------CCC-CHHHHHHHHHHHHhh
Confidence 35667 999999887777788888887777654421 2322111 01 123 57889888654 5
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+++++- -+ -|.-|++-+++|++.+ ++|++.-. |=.+.++++++++.| +.=||+..
T Consensus 240 ~i~~iE---------eP--~~~~d~~~~~~l~~~~---~iPIa~dE-~~~~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 240 DLTWIE---------EP--VPQENLSGHAAVRERS---EIPIQAGE-NWWFPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp CCSEEE---------CC--SCTTCHHHHHHHHHHC---SSCEEECT-TCCHHHHHHHHHHHTCCSEECCCT
T ss_pred CCCEEE---------CC--CCcchHHHHHHHHhhc---CCCEEeCC-CcCCHHHHHHHHHcCCCCEEEeCc
Confidence 777774 11 2334899999999887 69988754 556678899999877 66677764
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=86.06 E-value=4.3 Score=33.03 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=70.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+.++|.+.|-|=+-..+ + ..++++.++++|+.+ |-.- ..-|+.+..+.++. .+|.
T Consensus 82 ~~~~aGad~itvH~Ea~~---~---~~~~i~~i~~~G~k~----gval------------~p~t~~e~l~~~l~--~~D~ 137 (228)
T 3ovp_A 82 PMAVAGANQYTFHLEATE---N---PGALIKDIRENGMKV----GLAI------------KPGTSVEYLAPWAN--QIDM 137 (228)
T ss_dssp HHHHHTCSEEEEEGGGCS---C---HHHHHHHHHHTTCEE----EEEE------------CTTSCGGGTGGGGG--GCSE
T ss_pred HHHHcCCCEEEEccCCch---h---HHHHHHHHHHcCCCE----EEEE------------cCCCCHHHHHHHhc--cCCe
Confidence 356677777666332211 1 245566667766532 2210 01244455555554 3787
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+- +.+++=.+.+. ...--++.++++++... ++|+..=|| +..+.++.+++.|..-+=++|.+.
T Consensus 138 Vl--~msv~pGf~Gq~f~~~~l~ki~~lr~~~~--~~~I~VdGG--I~~~t~~~~~~aGAd~~VvGsaIf 201 (228)
T 3ovp_A 138 AL--VMTVEPGFGGQKFMEDMMPKVHWLRTQFP--SLDIEVDGG--VGPDTVHKCAEAGANMIVSGSAIM 201 (228)
T ss_dssp EE--EESSCTTTCSCCCCGGGHHHHHHHHHHCT--TCEEEEESS--CSTTTHHHHHHHTCCEEEESHHHH
T ss_pred EE--EeeecCCCCCcccCHHHHHHHHHHHHhcC--CCCEEEeCC--cCHHHHHHHHHcCCCEEEEeHHHh
Confidence 64 45554222220 11123566777776653 589999995 567999999999999999999875
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=85.99 E-value=12 Score=32.91 Aligned_cols=113 Identities=13% Similarity=0.169 Sum_probs=73.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++.+.||+.|=+-... ++++.++..+.|.+..- -++.+=.+ .+ ..| ++++|.+|+++ .+
T Consensus 208 ~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~a~G-~d~~l~vD------an---------~~~-~~~~a~~~~~~l~~~~ 269 (441)
T 2hxt_A 208 EAVADGFRTIKLKVGA-NVQDDIRRCRLARAAIG-PDIAMAVD------AN---------QRW-DVGPAIDWMRQLAEFD 269 (441)
T ss_dssp HHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHC-SSSEEEEE------CT---------TCC-CHHHHHHHHHTTGGGC
T ss_pred HHHHcCCCEEEEccCC-CHHHHHHHHHHHHHhcC-CCCeEEEE------CC---------CCC-CHHHHHHHHHHHHhcC
Confidence 4678899999887654 56777766666655442 12333111 01 123 58899999765 57
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
++++-- + -|.-|++-+++|++.++ ++|++.-+ |=...++++++++.| +.=||+.
T Consensus 270 i~~iEq----------P-~~~~d~~~~~~l~~~~~--~iPIa~dE-~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 270 IAWIEE----------P-TSPDDVLGHAAIRQGIT--PVPVSTGE-HTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp CSCEEC----------C-SCTTCHHHHHHHHHHHT--TSCEEECT-TCCSHHHHHHHHHHTCCSEECCC
T ss_pred CCeeeC----------C-CCHHHHHHHHHHHhhCC--CCCEEEeC-CcCCHHHHHHHHHcCCCCEEEeC
Confidence 886641 1 23458999999998863 49988755 566778899999887 5566764
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.90 E-value=2.4 Score=35.46 Aligned_cols=76 Identities=8% Similarity=0.023 Sum_probs=51.6
Q ss_pred CCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 65 TDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
-+.++..+++ .+.|++.+-+..- .++.|-+ .-.-++++++.|++. .++|+++|. ...+++++++++|+.
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~-~~~~~~p-~~~~~~e~~~~i~~~---~~~~v~~l~---~n~~~i~~a~~~G~~ 94 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSF-VSPKWVP-QLADSREVMAGIRRA---DGVRYSVLV---PNMKGYEAAAAAHAD 94 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEEC-SCTTTCG-GGTTHHHHHHHSCCC---SSSEEEEEC---SSHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccC-cCccccc-cccCHHHHHHHHHhC---CCCEEEEEe---CCHHHHHHHHHCCCC
Confidence 4566766654 5689999988532 2233321 012356777777543 269999997 347899999999999
Q ss_pred EeecchH
Q 029540 142 KFNVNTE 148 (192)
Q Consensus 142 KINi~T~ 148 (192)
.|+|...
T Consensus 95 ~V~i~~~ 101 (295)
T 1ydn_A 95 EIAVFIS 101 (295)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999853
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=6.4 Score=39.54 Aligned_cols=126 Identities=18% Similarity=0.276 Sum_probs=81.0
Q ss_pred hhhhcCCCEe-EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hh
Q 029540 2 EAIVLGFDSL-MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ET 77 (192)
Q Consensus 2 ~ai~~GFtSV-M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~T 77 (192)
+|+++|.+.| .||+-+- -+|. +...+.+++.|..+++=+-..++. .. ......++++...++++ +.
T Consensus 635 ~a~~~Gvd~irif~~~sd--~~~~---~~~~~~~~e~g~~~~~~i~~~~~~---~~--pe~~~~~~~~~~~~~a~~~~~~ 704 (1150)
T 3hbl_A 635 ESAKAGIDVFRIFDSLNW--VDQM---KVANEAVQEAGKISEGTICYTGDI---LN--PERSNIYTLEYYVKLAKELERE 704 (1150)
T ss_dssp HHHHTTCCEEEEECTTCC--GGGG---HHHHHHHHHTTCEEEEEEECCSCT---TC--TTTCSSSSHHHHHHHHHHHHHT
T ss_pred HHHhCCcCEEEEEeeCCH--HHHH---HHHHHHHHHHhhheeEEEeecccc---cC--hhhcCCCCHHHHHHHHHHHHHc
Confidence 5677888877 5665432 2333 455666677787777665554321 11 11123578887777755 47
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|.+. -.=|.- .|.-=.++++.|++.+ ++||-+| =.+|+.-...-.|++.|+.-|..
T Consensus 705 Ga~~i~l~--Dt~G~~---~P~~~~~lv~~l~~~~---~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~ 766 (1150)
T 3hbl_A 705 GFHILAIK--DMAGLL---KPKAAYELIGELKSAV---DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDT 766 (1150)
T ss_dssp TCSEEEEE--ETTCCC---CHHHHHHHHHHHHHHC---CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEE
T ss_pred CCCeeeEc--CccCCC---CHHHHHHHHHHHHHhc---CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 99987664 333332 2554567778888876 5776665 57899999999999999998754
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=85.70 E-value=17 Score=31.60 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=82.1
Q ss_pred hhhhc---CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh--
Q 029540 2 EAIVL---GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE-- 76 (192)
Q Consensus 2 ~ai~~---GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~-- 76 (192)
++++. ||+.+=+.-...++++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|+++
T Consensus 181 ~~~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~-~~~l~vD------aN---------~~~-~~~~A~~~~~~l~ 243 (390)
T 3ugv_A 181 LKAEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGR-DTALMVD------FN---------QGL-DMAEAMHRTRQID 243 (390)
T ss_dssp HHHTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCT-TSEEEEE------CT---------TCC-CHHHHHHHHHHHT
T ss_pred HHHHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCC-CCEEEEE------CC---------CCC-CHHHHHHHHHHHH
Confidence 34566 999999887776788888888777665422 2322221 01 123 58899888765
Q ss_pred -hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHHHHHH
Q 029540 77 -TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVRKAYM 154 (192)
Q Consensus 77 -TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~~a~~ 154 (192)
.+++++-= + -|.-|++-+++|++.+ ++|+++ |.|=.+.++++++++.| +.=||+.....-.++
T Consensus 244 ~~~i~~iEq---------P--~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 308 (390)
T 3ugv_A 244 DLGLEWIEE---------P--VVYDNFDGYAQLRHDL---KTPLMI-GENFYGPREMHQALQAGACDLVMPDFMRIGGVS 308 (390)
T ss_dssp TSCCSEEEC---------C--SCTTCHHHHHHHHHHC---SSCEEE-CTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHH
T ss_pred hhCCCEEEC---------C--CCcccHHHHHHHHHhc---CCCEEe-CCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 47777741 1 1334899999999887 699887 55667788899999887 777888765443343
Q ss_pred HH
Q 029540 155 DS 156 (192)
Q Consensus 155 ~~ 156 (192)
.+
T Consensus 309 ~~ 310 (390)
T 3ugv_A 309 GW 310 (390)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=85.52 E-value=4.4 Score=31.11 Aligned_cols=77 Identities=9% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhhhCCc-EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDID-ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD-~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.++.+..+-+...+.. .|-..+ +..|.+++ ++++.+++++.+. ++|++.=||.+.|+ ++.++.+.|+.-+
T Consensus 130 ~~~~~~i~~~~~~~~~~vli~~~-~~~g~~~g----~~~~~i~~~~~~~---~~Pvia~~g~~~~~-~~~~~~~~G~~~~ 200 (237)
T 3cwo_X 130 ILLRDWVVEVEKRGAGEILLTSI-DRDGTKSG----YDTEMIRFVRPLT---TLPIIASGGAGKME-HFLEAFLAGADAA 200 (237)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEET-TTTTCCSC----CCHHHHHHHGGGC---CSCEEEESCCCSHH-HHHHHHHHTCSEE
T ss_pred cCHHHHHHHHhhcCCCeEEEEec-CCCCcccc----ccHHHHHHHHHhc---CCCEEecCCCCCHH-HHHHHHHcCcHHH
Confidence 4666666667788887 555555 34565543 3478888888776 69999888887765 5888889999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=+++.+.
T Consensus 201 ~vg~a~~ 207 (237)
T 3cwo_X 201 LAASVFH 207 (237)
T ss_dssp EESHHHH
T ss_pred hhhHHHH
Confidence 8888773
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=85.39 E-value=2.7 Score=38.99 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=80.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec-cccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL-GRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl-G~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.|+..|+|+|..|....|.-.+....+.+.+.++..++.+=.-+ +.+..... .. ......++++.+++++.-+|.
T Consensus 111 ~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~-~~---~~g~~~~~~el~~l~~~~~v~ 186 (608)
T 3nqb_A 111 AVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPG-LE---RGGADFDAAILADLLSWPEIG 186 (608)
T ss_dssp HHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSSSTT-SC---CCSCCCCHHHHHHHHTSTTEE
T ss_pred HHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCCCCc-cc---cCcccCCHHHHHHHHhccCcc
Confidence 57889999999876555554445666777888887777665555 33321100 00 011235778999999877765
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
.+.. +++..|.. .-+-+.++.|..+. ..+.|+..| ..+...+.+...++.|+.-...
T Consensus 187 glgE-~~~~~~v~-----~~d~~l~~~l~~A~-~~g~pV~~H-a~~~~~~~L~~~~~aGv~~~H~ 243 (608)
T 3nqb_A 187 GIAE-IMNMRGVI-----ERDPRMSGIVQAGL-AAEKLVCGH-ARGLKNADLNAFMAAGVSSDHE 243 (608)
T ss_dssp EEEE-ECCHHHHH-----TTCHHHHHHHHHHH-HHTCEEEEC-CTTCCHHHHHHHHHTTCCEECC
T ss_pred eeeE-eeccCCcC-----CCcHHHHHHHHHHH-HcCCEEEEc-CCCCCHHHHHHHHHcCCCeeec
Confidence 5543 22222211 11334445454322 237999999 4578888899999999876553
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=85.28 E-value=5.9 Score=27.31 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=49.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+++++|.+++++...|.+-+-+. .|..+ ++++++|++......+|+++--+++ ..+...++.+.|+.-
T Consensus 32 ~~~~~~al~~l~~~~~dlvllD~~---------~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~-~~~~~~~~~~~Ga~~ 101 (122)
T 3gl9_A 32 AENGQIALEKLSEFTPDLIVLXIM---------MPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG-GEEDESLALSLGARK 101 (122)
T ss_dssp ESSHHHHHHHHTTBCCSEEEECSC---------CSSSCHHHHHHHHHTSTTTTTSCEEEEESCC-SHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHHhcCCCEEEEecc---------CCCCcHHHHHHHHHhcccccCCCEEEEecCC-chHHHHHHHhcChhh
Confidence 467889999999999998887642 13322 7888999875322369999887765 455678888998754
|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=85.22 E-value=9.9 Score=31.50 Aligned_cols=147 Identities=10% Similarity=0.122 Sum_probs=80.4
Q ss_pred hhhhcCCCEeEeeCCCC---CHHHHHHHHHHHHHHHHhCCCe---EEEeccccccCCCCC--ccccccccCCCHHHHHHH
Q 029540 2 EAIVLGFDSLMVDGSHL---PFKDNISHTKYISFLAHSKGML---VEAELGRLSGTEDGL--TVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l---~~eeNi~~Tk~vv~~Ah~~gv~---VEaElG~i~g~e~~~--~~~~~~~~~T~peea~~F 73 (192)
.+-++||+.|-+-.... |.+.+-...+++.+.+..+|+. +-+-.+ ....-.-. .....+..+...+.+.++
T Consensus 39 ~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~~~~-~~~~~~l~~~d~~~r~~~~~~~~~~i~~ 117 (335)
T 2qw5_A 39 KLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKISTNVG-ATRTFDPSSNYPEQRQEALEYLKSRVDI 117 (335)
T ss_dssp HHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEEECC-CCSSSCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEEEec-cCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678999998865433 3333335567888889999998 877322 21100000 000011122344567777
Q ss_pred hhhhCCcEEEEecC-cCCCCCCCCCC-------------CCC----HHHHHHHHhhhccCCccEEeecC-----C-CCCH
Q 029540 74 IDETDIDALAVCIG-NVHGKYPSSGP-------------NLK----LDLLKDLHALSSKKGVLLVLHGA-----S-GLSA 129 (192)
Q Consensus 74 v~~TgvD~LAvaiG-t~HG~y~~~~p-------------~ld----~~~L~~I~~~~~~~~iPLVlHGg-----S-G~~~ 129 (192)
.++-|++.+ +..+ +.+|.|++..+ .-. .+.|+++.+...+.+|.|++|=- + ..+.
T Consensus 118 A~~lG~~~v-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~t~ 196 (335)
T 2qw5_A 118 TAALGGEIM-MGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVKLAIEPITHWETPGPNKL 196 (335)
T ss_dssp HHHTTCSEE-EECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCCTTTCSSCCSH
T ss_pred HHHcCCCEE-eccccCccccccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCcccccccCCH
Confidence 788999998 4322 23455532111 011 23345555544445799999642 1 2356
Q ss_pred HHHHHHHhc-C--CeEeecchHHH
Q 029540 130 ELIKGCIER-G--VRKFNVNTEVR 150 (192)
Q Consensus 130 e~~~~~i~~-G--i~KINi~T~l~ 150 (192)
+++.+.++. + -.+++++|.-.
T Consensus 197 ~~~~~ll~~v~~~~vgl~~D~~H~ 220 (335)
T 2qw5_A 197 SQLIEFLKGVKSKQVGVVIDSAHE 220 (335)
T ss_dssp HHHHHHHTTCCCTTEEEEEEHHHH
T ss_pred HHHHHHHHhcCCCCeeEEEecccc
Confidence 677776643 3 46788877653
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=85.13 E-value=2.4 Score=35.21 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=53.3
Q ss_pred CCHHHHHHHhhhh-----C-CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 65 TDVNQAEEFIDET-----D-IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 65 T~peea~~Fv~~T-----g-vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
++|+.++.|.+.. + ||+.+ + |+ .-+++++++|++.+. ++|+.+=||-.. .|+++++.+
T Consensus 139 ~~~~~~~~~a~~g~~~~~~~VYl~s-~-G~----------~~~~~~i~~i~~~~~--~~Pv~vGgGI~t-~e~a~~~~~- 202 (240)
T 1viz_A 139 LNMDDIVAYARVSELLQLPIFYLEY-S-GV----------LGDIEAVKKTKAVLE--TSTLFYGGGIKD-AETAKQYAE- 202 (240)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC-T-TS----------CCCHHHHHHHHHTCS--SSEEEEESSCCS-HHHHHHHHT-
T ss_pred CCHHHHHHHHHhCcccCCCEEEEeC-C-Cc----------cChHHHHHHHHHhcC--CCCEEEEeccCC-HHHHHHHHh-
Confidence 6789999998765 4 35444 2 32 127899999998772 499999887654 467999888
Q ss_pred CCeEeecchHHHH
Q 029540 139 GVRKFNVNTEVRK 151 (192)
Q Consensus 139 Gi~KINi~T~l~~ 151 (192)
|..+|-++|.+-.
T Consensus 203 gAd~VIVGSa~v~ 215 (240)
T 1viz_A 203 HADVIVVGNAVYE 215 (240)
T ss_dssp TCSEEEECTHHHH
T ss_pred CCCEEEEChHHHh
Confidence 9999999998753
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=85.05 E-value=4.3 Score=34.64 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=46.3
Q ss_pred hcCCCEeEeeCC-------------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH--
Q 029540 5 VLGFDSLMVDGS-------------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ-- 69 (192)
Q Consensus 5 ~~GFtSVM~D~S-------------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee-- 69 (192)
++||+.+.. |+ ..+++|-+..|+.|++-+.. ..|=+.++.-+ .-.+|++
T Consensus 52 ~aG~d~ilv-GdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~--~~vvaD~pfgs-------------y~~s~~~a~ 115 (281)
T 1oy0_A 52 EAGIPVLLV-GDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPH--ALVVADLPFGS-------------YEAGPTAAL 115 (281)
T ss_dssp TTTCCEEEE-CTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTT--SEEEEECCTTS-------------STTCHHHHH
T ss_pred HcCCCEEEE-CHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCC--CeEEEECCCCc-------------ccCCHHHHH
Confidence 578887766 43 34799999999999888753 33337766542 1246777
Q ss_pred --HHHHhhhhCCcEEEEe
Q 029540 70 --AEEFIDETDIDALAVC 85 (192)
Q Consensus 70 --a~~Fv~~TgvD~LAva 85 (192)
|.++++++|++++=+=
T Consensus 116 ~na~rl~~eaGa~aVklE 133 (281)
T 1oy0_A 116 AAATRFLKDGGAHAVKLE 133 (281)
T ss_dssp HHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHhCCeEEEEC
Confidence 5889999999977654
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=85.00 E-value=1.4 Score=37.52 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=53.8
Q ss_pred HHHhhhhCCcEEEEecCcC-------------CCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 71 EEFIDETDIDALAVCIGNV-------------HGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 71 ~~Fv~~TgvD~LAvaiGt~-------------HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
.+-+++.|+|.+-++-++. .|.|.+ .| ...++.+++|++.+.. ++|++.=||-..+ ++..++
T Consensus 231 a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g-~~~~~~~~~~i~~i~~~~~~-~ipVi~~GGI~~~-~da~~~ 307 (336)
T 1f76_A 231 ADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG-RPLQLKSTEIIRRLSLELNG-RLPIIGVGGIDSV-IAAREK 307 (336)
T ss_dssp HHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-GGGHHHHHHHHHHHHHHHTT-SSCEEEESSCCSH-HHHHHH
T ss_pred HHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC-chhHHHHHHHHHHHHHHhCC-CCCEEEECCCCCH-HHHHHH
Confidence 4456678999999986542 111221 11 1235777888887731 4999988876654 558888
Q ss_pred HhcCCeEeecchHHHH
Q 029540 136 IERGVRKFNVNTEVRK 151 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~ 151 (192)
+..|..=|-++|.+..
T Consensus 308 l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 308 IAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHTCSEEEESHHHHH
T ss_pred HHCCCCEEEeeHHHHh
Confidence 8999999999999753
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=9 Score=32.22 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=52.4
Q ss_pred CCCHHHHHHHhhh---hCCcEEEEec-CcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 64 LTDVNQAEEFIDE---TDIDALAVCI-GNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 64 ~T~peea~~Fv~~---TgvD~LAvai-Gt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
..+++++.+.+++ .|+|.+-+.. |..-..|.+ ..+.++.+.|+++-+...+.++|+.+|-. .++.++.+++.
T Consensus 168 ~~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~---~~~~i~~~l~~ 244 (423)
T 3feq_A 168 VDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAY---TGRAIARAVRC 244 (423)
T ss_dssp CCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEE---EHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHc
Confidence 4678888888764 4788776653 222222211 12467888888887777667899999986 45667777777
Q ss_pred CCeEeec
Q 029540 139 GVRKFNV 145 (192)
Q Consensus 139 Gi~KINi 145 (192)
|+.-|--
T Consensus 245 g~~~i~H 251 (423)
T 3feq_A 245 GVRTIEH 251 (423)
T ss_dssp TCCEEEE
T ss_pred CCCEEec
Confidence 7665443
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=84.60 E-value=19 Score=31.05 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=78.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
++++.||+.+=+.-...++++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|++ +.+
T Consensus 156 ~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~-~~~l~vD------an---------~~~-~~~~A~~~~~~l~~~~ 218 (377)
T 3my9_A 156 AMVPAGHTVFKMKTGVKPHAEELRILETMRGEFGE-RIDLRLD------FN---------QAL-TPFGAMKILRDVDAFR 218 (377)
T ss_dssp HHTTTTCCEEEEECSSSCHHHHHHHHHHHHHHHGG-GSEEEEE------CT---------TCC-CTTTHHHHHHHHHTTC
T ss_pred HHHHcCCCEEEEccCCCcHHHHHHHHHHHHHHhCC-CCeEEEe------CC---------CCc-CHHHHHHHHHHHhhcC
Confidence 35667999999988877889999888887765532 2322111 11 123 3567777755 457
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
++++- -+ -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+....
T Consensus 219 i~~iE---------qP--~~~~d~~~~~~l~~~~---~ipIa~-dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 275 (377)
T 3my9_A 219 PTFIE---------QP--VPRRHLDAMAGFAAAL---DTPILA-DESCFDAVDLMEVVRRQAADAISVKIMK 275 (377)
T ss_dssp CSCEE---------CC--SCTTCHHHHHHHHHHC---SSCEEE-STTCSSHHHHHHHHHHTCCSEEECCHHH
T ss_pred CCEEE---------CC--CCccCHHHHHHHHHhC---CCCEEE-CCccCCHHHHHHHHHcCCCCEEEecccc
Confidence 87774 11 2334899999999887 699887 45667788899999877 6667876443
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=84.60 E-value=3.4 Score=33.86 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=50.9
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCc-cEEeecCCCC----CH--H--------
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGV-LLVLHGASGL----SA--E-------- 130 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~i-PLVlHGgSG~----~~--e-------- 130 (192)
+++++.+.+.+.|.|.+-+..++-|+.+. +.++-+.++++++..+..++ ++++|+...+ |+ +
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~h~~~~~nl~s~d~~~~r~~~~~~ 95 (303)
T 3aal_A 19 MLLAASEEAASYGANTFMIYTGAPQNTKR---KSIEELNIEAGRQHMQAHGIEEIVVHAPYIINIGNTTNLDTFSLGVDF 95 (303)
T ss_dssp THHHHHHHHHHTTCSEEEEESSCTTCCCC---CCSGGGCHHHHHHHHHHTTCCEEEEECCTTCCTTCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEEcCCCCCccCC---CCCCHHHHHHHHHHHHHcCCceEEEeccccccCCCCCcHHHHHHHHHH
Confidence 68899999999999999986555554332 33433445556665555578 7999986432 22 2
Q ss_pred ---HHHHHHhcCCeEeecch
Q 029540 131 ---LIKGCIERGVRKFNVNT 147 (192)
Q Consensus 131 ---~~~~~i~~Gi~KINi~T 147 (192)
.+..|..+|+..|++.+
T Consensus 96 ~~~~i~~A~~lGa~~vv~h~ 115 (303)
T 3aal_A 96 LRAEIERTEAIGAKQLVLHP 115 (303)
T ss_dssp HHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 13345678888888743
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=84.59 E-value=5.5 Score=32.90 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KI 143 (192)
.||.+|.+.+.+-|||-+== ||.-+.....-.+++|+++.+..+ + .+.+==|+|+..+.+.+.+ ..|+.-+
T Consensus 133 ~d~~~ale~L~~lGv~rILT-----SG~~~~~~a~~g~~~L~~Lv~~a~--~-ri~Im~GgGV~~~Ni~~l~~~tGv~e~ 204 (224)
T 2bdq_A 133 SDQKKSIDQLVALGFTRILL-----HGSSNGEPIIENIKHIKALVEYAN--N-RIEIMVGGGVTAENYQYICQETGVKQA 204 (224)
T ss_dssp TTHHHHHHHHHHTTCCEEEE-----CSCSSCCCGGGGHHHHHHHHHHHT--T-SSEEEECSSCCTTTHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHcCCCEEEC-----CCCCCCCcHHHHHHHHHHHHHhhC--C-CeEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 89999999999999997762 343332124456888988877653 2 2333346699999999988 6899999
Q ss_pred ecc
Q 029540 144 NVN 146 (192)
Q Consensus 144 Ni~ 146 (192)
...
T Consensus 205 H~s 207 (224)
T 2bdq_A 205 HGT 207 (224)
T ss_dssp EET
T ss_pred ccc
Confidence 853
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=84.11 E-value=3.2 Score=33.12 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=78.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+-++||+.|-+-..++|+.-.-...+++.+.+.++|+.+-+ ++.... ......+++.++.++-|+..
T Consensus 38 ~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~-----------~~~~~~~~~i~~A~~lGa~~ 105 (257)
T 3lmz_A 38 TLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYA-VGPIYM-----------KSEEEIDRAFDYAKRVGVKL 105 (257)
T ss_dssp HHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEE-EEEEEE-----------CSHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEE-Eecccc-----------CCHHHHHHHHHHHHHhCCCE
Confidence 456889999999888776543344557788888899998763 221111 01233467778888899999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC--C---CCHHHHHHHHhcC--CeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS--G---LSAELIKGCIERG--VRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS--G---~~~e~~~~~i~~G--i~KINi~T~l~~ 151 (192)
+-+.-| .+.|+++.+..++.+|.|++|--. + .+.+++.+.++.. -.+++++|.-..
T Consensus 106 v~~~p~--------------~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~ll~~~~p~vg~~~D~~h~~ 168 (257)
T 3lmz_A 106 IVGVPN--------------YELLPYVDKKVKEYDFHYAIHLHGPDIKTYPDATDVWVHTKDLDPRIGMCLDVGHDL 168 (257)
T ss_dssp EEEEEC--------------GGGHHHHHHHHHHHTCEEEEECCCTTCSSSCSHHHHHHHHTTSCTTEEEEEEHHHHH
T ss_pred EEecCC--------------HHHHHHHHHHHHHcCCEEEEecCCCcccccCCHHHHHHHHHhCCCCccEEEchhhHH
Confidence 886321 133444544444447999998663 2 3567777777632 256777765543
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=17 Score=31.76 Aligned_cols=74 Identities=12% Similarity=-0.001 Sum_probs=54.4
Q ss_pred CHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-Ce
Q 029540 66 DVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VR 141 (192)
Q Consensus 66 ~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~ 141 (192)
++++|.+|+++ -+++++-. |.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.
T Consensus 225 ~~~~A~~~~~~L~~~~i~~iE~-------------P~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~~~d 287 (409)
T 3go2_A 225 KPEGYLKILRELADFDLFWVEI-------------DSYSPQGLAYVRNHS---PHPISS-CETLFGIREFKPFFDANAVD 287 (409)
T ss_dssp CHHHHHHHHHHTTTSCCSEEEC-------------CCSCHHHHHHHHHTC---SSCEEE-CTTCCHHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHhhcCCeEEEe-------------CcCCHHHHHHHHhhC---CCCEEe-CCCcCCHHHHHHHHHhCCCC
Confidence 67899888665 57887762 334899999999887 699877 66767788999999887 66
Q ss_pred EeecchHHHHHHHHHh
Q 029540 142 KFNVNTEVRKAYMDSL 157 (192)
Q Consensus 142 KINi~T~l~~a~~~~~ 157 (192)
=||+.... -.++.++
T Consensus 288 ~v~~k~~~-GGit~~~ 302 (409)
T 3go2_A 288 VAIVDTIW-NGVWQSM 302 (409)
T ss_dssp EEEECHHH-HCHHHHH
T ss_pred EEEeCCCC-CCHHHHH
Confidence 67887643 3344443
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=83.77 E-value=20 Score=31.02 Aligned_cols=110 Identities=9% Similarity=0.034 Sum_probs=71.9
Q ss_pred cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hCCcEE
Q 029540 6 LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TDIDAL 82 (192)
Q Consensus 6 ~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---TgvD~L 82 (192)
.||+.+=+.-...++++.++..+.|.+..-. ++.+=.+ . ...+ ++++|.+|+++ .++.++
T Consensus 162 ~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~-~~~l~vD------a---------N~~~-~~~~A~~~~~~l~~~~i~~i 224 (381)
T 3fcp_A 162 GRHRAFKLKIGARELATDLRHTRAIVEALGD-RASIRVD------V---------NQAW-DAATGAKGCRELAAMGVDLI 224 (381)
T ss_dssp ---CEEEEECCSSCHHHHHHHHHHHHHHTCT-TCEEEEE------C---------TTCB-CHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEecCCCChHHHHHHHHHHHHHcCC-CCeEEEE------C---------CCCC-CHHHHHHHHHHHhhcCccce
Confidence 5899988887777788888777766554321 1221111 0 0123 58899998655 477766
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
- ..-|.-|++-+++|++.+ ++|+++ |-|=.+..+++++++.| +.=||+..
T Consensus 225 E-----------eP~~~~d~~~~~~l~~~~---~ipIa~-dE~~~~~~~~~~~~~~~a~d~v~~k~ 275 (381)
T 3fcp_A 225 E-----------QPVSAHDNAALVRLSQQI---ETAILA-DEAVATAYDGYQLAQQGFTGAYALKI 275 (381)
T ss_dssp E-----------CCBCTTCHHHHHHHHHHS---SSEEEE-STTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred e-----------CCCCcccHHHHHHHHHhC---CCCEEE-CCCcCCHHHHHHHHHcCCCCEEEecc
Confidence 3 111334899999999887 699987 67777889999999876 66778754
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=83.77 E-value=6.5 Score=35.20 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=75.5
Q ss_pred hhhc-CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 3 AIVL-GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~~-GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++. ||+.+=+.....+.++.++..+.|-+.. + ++.+=.+ .+ .--++++|.+|+++..- .
T Consensus 202 ~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~-~-~~~L~vD------aN----------~~w~~~~Ai~~~~~L~~-~ 262 (445)
T 3va8_A 202 IIDEYGFKAIKLKGGVFPPADEVAAIKALHKAF-P-GVPLRLD------PN----------AAWTVETSKWVAKELEG-I 262 (445)
T ss_dssp HHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHS-T-TCCEEEE------CT----------TCBCHHHHHHHHHHTTT-T
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhC-C-CCcEeee------CC----------CCCCHHHHHHHHHHHhh-h
Confidence 3444 9999999887778888888877776665 2 3222111 11 12358899999877531 1
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
+ .|-. .|--|++-+++|++.+ ++|++. |-|=.+..+++++++.| +.=+|+.
T Consensus 263 --l-------~~iE-eP~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~div~~d 314 (445)
T 3va8_A 263 --V-------EYLE-DPAGEIEGMAAVAKEA---SMPLAT-NMAVVAFDHLPPSILQDAVQVILSD 314 (445)
T ss_dssp --C-------SEEE-SCBSHHHHHHHHHTTC---SSCEEE-SSSCCSGGGHHHHHHTTCCSEEEEC
T ss_pred --c-------CeEe-ecCcCHHHHHHHHHcC---CCCEEe-CCccCCHHHHHHHHHcCCCCEEEec
Confidence 1 1222 4655888888998877 699987 67777888999999887 5557775
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=83.75 E-value=20 Score=30.63 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=74.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.+=+.-..- .++.++..+.|.+..-+ ++.+=.+. + ..+ ++++|.+|+++ .+
T Consensus 149 ~~~~~G~~~~K~K~g~~-~~~d~~~v~avR~a~g~-~~~l~vDa------n---------~~~-~~~~a~~~~~~L~~~~ 210 (354)
T 3jva_A 149 EKVKLGFDTLKIKVGTG-IEADIARVKAIREAVGF-DIKLRLDA------N---------QAW-TPKDAVKAIQALADYQ 210 (354)
T ss_dssp HHHHTTCSEEEEECCSC-HHHHHHHHHHHHHHHCT-TSEEEEEC------T---------TCS-CHHHHHHHHHHTTTSC
T ss_pred HHHHhCCCeEEEEeCCC-HHHHHHHHHHHHHHcCC-CCeEEEEC------C---------CCC-CHHHHHHHHHHHHhcC
Confidence 35678999988776543 47777777766654421 22222110 0 123 68899988765 46
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
++++- -+ -|.-|++-+++|++.+ ++|+++ |.|=.+.++++++++.| +.=||+....
T Consensus 211 i~~iE---------qP--~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~~~d~v~~k~~~ 267 (354)
T 3jva_A 211 IELVE---------QP--VKRRDLEGLKYVTSQV---NTTIMA-DESCFDAQDALELVKKGTVDVINIKLMK 267 (354)
T ss_dssp EEEEE---------CC--SCTTCHHHHHHHHHHC---SSEEEE-STTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CCEEE---------CC--CChhhHHHHHHHHHhC---CCCEEE-cCCcCCHHHHHHHHHcCCCCEEEECchh
Confidence 67664 11 1334889999999887 699887 45566778899999875 6778887443
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=83.67 E-value=2.2 Score=37.48 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=55.9
Q ss_pred HHHHHhhhhCCcEEEEecCcC-------------CCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029540 69 QAEEFIDETDIDALAVCIGNV-------------HGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~-------------HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
+..+-+++.|+|.|.+.-.|. .|.|++ .| .+.++.+.+|++.+.. ++|++.=||-..+ ++..
T Consensus 238 ~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG-~~i~p~a~~~v~~i~~~v~~-~ipvI~~GGI~s~-~da~ 314 (367)
T 3zwt_A 238 DIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSG-KPLRDLSTQTIREMYALTQG-RVPIIGVGGVSSG-QDAL 314 (367)
T ss_dssp HHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEE-GGGHHHHHHHHHHHHHHTTT-CSCEEEESSCCSH-HHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCC-cccchhHHHHHHHHHHHcCC-CceEEEECCCCCH-HHHH
Confidence 344445689999999864442 234432 11 2356888888888731 4999999987655 5688
Q ss_pred HHHhcCCeEeecchHHH
Q 029540 134 GCIERGVRKFNVNTEVR 150 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~l~ 150 (192)
+++..|..=|-++|.+.
T Consensus 315 ~~l~~GAd~V~vgra~l 331 (367)
T 3zwt_A 315 EKIRAGASLVQLYTALT 331 (367)
T ss_dssp HHHHHTCSEEEESHHHH
T ss_pred HHHHcCCCEEEECHHHH
Confidence 88899999999999985
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=83.67 E-value=15 Score=32.09 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=72.2
Q ss_pred hhhhcCCCEeEeeCC--------CCC----HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029540 2 EAIVLGFDSLMVDGS--------HLP----FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S--------~l~----~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
++++.||+.+=+.-. ..+ +++.++..+.|.+..-. ++.+=.+ .+ ..+ ++++
T Consensus 161 ~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~-d~~l~vD---------an------~~~-~~~~ 223 (404)
T 4e5t_A 161 KAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGT-KADLLFG---------TH------GQF-TVSG 223 (404)
T ss_dssp HHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGG-GSEEEEC---------CC------SCB-CHHH
T ss_pred HHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCC-CCeEEEe---------CC------CCc-CHHH
Confidence 456789999988632 123 45556555555554421 2222211 10 123 5789
Q ss_pred HHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeec
Q 029540 70 AEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNV 145 (192)
Q Consensus 70 a~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi 145 (192)
|.+|++ +.|++++-- + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+
T Consensus 224 A~~~~~~l~~~~i~~iEe---------P--~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~d~v~~ 288 (404)
T 4e5t_A 224 AKRLARRLEAYDPLWFEE---------P--IPPEKPEDMAEVARYT---SIPVAT-GERLCTKYEFSRVLETGAASILQM 288 (404)
T ss_dssp HHHHHHHHGGGCCSEEEC---------C--SCTTCHHHHHHHHHHC---SSCEEE-CTTCCHHHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHhhcCCcEEEC---------C--CCcccHHHHHHHHhhC---CCCEEe-CCCcCCHHHHHHHHHhCCCCEEec
Confidence 988855 468888851 1 1334899999999988 699876 56667788999999887 666777
Q ss_pred c
Q 029540 146 N 146 (192)
Q Consensus 146 ~ 146 (192)
.
T Consensus 289 d 289 (404)
T 4e5t_A 289 N 289 (404)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=83.59 E-value=1.1 Score=39.15 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=58.1
Q ss_pred CCHHHHHHHhh---hhC-CcEEEEecC-------------------cCCCCCCCCCC--CCCHHHHHHHHhhhccCCccE
Q 029540 65 TDVNQAEEFID---ETD-IDALAVCIG-------------------NVHGKYPSSGP--NLKLDLLKDLHALSSKKGVLL 119 (192)
Q Consensus 65 T~peea~~Fv~---~Tg-vD~LAvaiG-------------------t~HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPL 119 (192)
.|.++..++++ +.| +|.|.+.-- +..|.|++ .| .++++.+.+|++... ++|+
T Consensus 204 ~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG-~~i~p~a~~~i~~v~~~~~--~ipI 280 (354)
T 4ef8_A 204 FDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGG-RYVLPTALANINAFYRRCP--GKLI 280 (354)
T ss_dssp CSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEG-GGGHHHHHHHHHHHHHHCT--TSEE
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCC-CCCchHHHHHHHHHHHhCC--CCCE
Confidence 35666666665 777 999875321 22344543 12 367888888888742 5999
Q ss_pred EeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 120 VLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 120 VlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+-=||--.+ ++..+++..|..-|-++|.+..
T Consensus 281 I~~GGI~s~-~da~~~l~aGAd~V~vgra~l~ 311 (354)
T 4ef8_A 281 FGCGGVYTG-EDAFLHVLAGASMVQVGTALQE 311 (354)
T ss_dssp EEESCCCSH-HHHHHHHHHTEEEEEECHHHHH
T ss_pred EEECCcCCH-HHHHHHHHcCCCEEEEhHHHHH
Confidence 999986655 5577888999999999999863
|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=83.52 E-value=1.6 Score=38.10 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=75.0
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccC----CccEEee
Q 029540 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKK----GVLLVLH 122 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~----~iPLVlH 122 (192)
.+|++||...++++ +.|+|.+-+.- +.=|..++. --++=+.-+++|-+.++.. ++|+.+|
T Consensus 180 ~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifD-s~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f 258 (368)
T 4exq_A 180 MAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFD-TWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAF 258 (368)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE-TTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEE
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC-CccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 46789988887765 46999876543 221333321 0012333456777766542 3898888
Q ss_pred cCCCCCHHHHHHHHhcCCeEeecch--HHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029540 123 GASGLSAELIKGCIERGVRKFNVNT--EVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 123 GgSG~~~e~~~~~i~~Gi~KINi~T--~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
++- . ...+....++|+.-+|++. ++..+-. .+.. .+.||.. +-...+.+++.+++.|+.+|.
T Consensus 259 ~~g-~-~~~l~~l~~~g~d~i~~d~~~dl~~ak~-~~g~~~~l~Gnldp~~-L~gt~e~I~~~v~~~l~~~g~ 327 (368)
T 4exq_A 259 TKG-G-GLWLEDLAATGVDAVGLDWTVNLGRARE-RVAGRVALQGNLDPTI-LFAPPEAIRAEARAVLDSYGN 327 (368)
T ss_dssp ETT-C-GGGHHHHHTSSCSEEECCTTSCHHHHHH-HHTTSSEEEEEECGGG-GGSCHHHHHHHHHHHHHHHCS
T ss_pred cCC-c-HHHHHHHHHhCCCEEeeCCCCCHHHHHH-HhCCCEEEEECCCHHH-hCCCHHHHHHHHHHHHHHhCC
Confidence 763 3 3556777889999988864 4443321 2221 1336653 345678999999999999875
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=83.50 E-value=7 Score=33.91 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=69.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh---C
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---D 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---g 78 (192)
++++.||+.+=+.-.. +.++.++..+.|.+..- -++.+=.+ . ...+ ++++|.+|+++. +
T Consensus 155 ~~~~~G~~~iKiK~G~-~~~~d~~~v~avR~a~g-~~~~l~vD------a---------n~~~-~~~~a~~~~~~l~~~~ 216 (378)
T 3eez_A 155 RYRQRGYVAHSVKIGG-DVERDIARIRDVEDIRE-PGEIVLYD------V---------NRGW-TRQQALRVMRATEDLH 216 (378)
T ss_dssp HHHHTTCCEEEEECCS-CHHHHHHHHHHHTTSCC-TTCEEEEE------C---------TTCC-CHHHHHHHHHHTGGGT
T ss_pred HHHhCCCCEEEeccCC-CHHHHHHHHHHHHHHcC-CCceEEEE------C---------CCCC-CHHHHHHHHHHhccCC
Confidence 3456788888776554 55666655444432211 02222111 0 0123 588999987653 4
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
+ ++- .|--|++-++++++.+ ++|++. |.|=.+.++++++++.| +.=||+....
T Consensus 217 i-~iE-------------qP~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 217 V-MFE-------------QPGETLDDIAAIRPLH---SAPVSV-DECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp C-CEE-------------CCSSSHHHHHHTGGGC---CCCEEE-CTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred e-EEe-------------cCCCCHHHHHHHHhhC---CCCEEE-CCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 4 431 2433899899998877 699887 66667788899999887 7778886544
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=83.13 E-value=15 Score=32.78 Aligned_cols=111 Identities=10% Similarity=0.156 Sum_probs=75.6
Q ss_pred hhh-cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 3 AIV-LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~-~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++ .||+.+=+.....+.++.++..+.|-+.. + ++.+=.+ . +.--++++|.+|+++..- .
T Consensus 204 ~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~-~-d~~L~vD------a----------N~~w~~~~Ai~~~~~L~~-~ 264 (445)
T 3vdg_A 204 MIDEYGFSAIKLKGGVFAPEEEMAAVEALRAAF-P-DHPLRLD------P----------NAAWTPQTSVKVAAGLEG-V 264 (445)
T ss_dssp HHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHC-T-TSCEEEE------C----------TTCSCHHHHHHHHHHTTT-T
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-C-CCcEEEE------C----------CCCCCHHHHHHHHHHHhh-H
Confidence 345 39999988877778888888777776655 2 3322111 1 112368899999876531 1
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
+ .|-. .|--|++-+++|++.+ ++|++. |-|=.+..+++++++.| +.=+|+.
T Consensus 265 --l-------~~iE-eP~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~a~div~~d 316 (445)
T 3vdg_A 265 --L-------EYLE-DPTPGLDGMAEVAAQA---PMPLAT-NMCVVAFDQLPAAVAKNSVQVVLSD 316 (445)
T ss_dssp --C-------SEEE-CCSSSHHHHHHHHHHC---SSCEEE-SSSCCSGGGHHHHHHHTCCSEEEEC
T ss_pred --H-------Heee-CCCCCHHHHHHHHhcC---CCCEEc-CCcCCCHHHHHHHHHcCCCCEEeeC
Confidence 1 1222 3555899999999887 699987 77778888999999887 5557774
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=83.09 E-value=5.3 Score=31.93 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecCCC----CCHHH------
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGASG----LSAEL------ 131 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGgSG----~~~e~------ 131 (192)
.+++++.+++.+.|.|.+-+...+.|. |. .+.++.+.++++++..++.++. +++|+... .|+++
T Consensus 12 ~~l~~~l~~~~~~G~~~vEl~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~ 88 (285)
T 1qtw_A 12 GGLANAAIRAAEIDATAFALFTKNQRQ-WR--AAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSR 88 (285)
T ss_dssp TCHHHHHHHHHHTTCSEEECCSSCSSC-SS--CCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEeeCCCCCc-Cc--CCCCCHHHHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHH
Confidence 567778888888888877774333332 22 1445556666666666555665 67776432 12221
Q ss_pred ------HHHHHhcCCeEeecc
Q 029540 132 ------IKGCIERGVRKFNVN 146 (192)
Q Consensus 132 ------~~~~i~~Gi~KINi~ 146 (192)
++.|..+|+..|++.
T Consensus 89 ~~~~~~i~~A~~lGa~~v~~~ 109 (285)
T 1qtw_A 89 DAFIDEMQRCEQLGLSLLNFH 109 (285)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 333556777777764
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=83.01 E-value=4.4 Score=32.44 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=48.0
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecCCC----CCHH--------
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGASG----LSAE-------- 130 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGgSG----~~~e-------- 130 (192)
+++++.+++.+.|.|.+-+..++-|. |. .+.++.+.++++++..++.++. +..|+... .|++
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~ 89 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARS-WS--AKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVE 89 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSS-SC--CCCCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccc-cc--ccCCCHHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHH
Confidence 67788888888888888876554332 22 2455666667777766555665 77787531 1221
Q ss_pred ----HHHHHHhcCCeEeecc
Q 029540 131 ----LIKGCIERGVRKFNVN 146 (192)
Q Consensus 131 ----~~~~~i~~Gi~KINi~ 146 (192)
.++.|..+|+..|++.
T Consensus 90 ~~~~~i~~A~~lG~~~v~~~ 109 (287)
T 2x7v_A 90 LLKKEVEICRKLGIRYLNIH 109 (287)
T ss_dssp HHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 2333556788777764
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=82.94 E-value=10 Score=32.47 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=76.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
++++.||+.+=+.-.. +.++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|++ +.+
T Consensus 150 ~~~~~G~~~~K~K~G~-~~~~d~~~v~avR~~~g~-~~~l~vD------an---------~~~-~~~~a~~~~~~l~~~~ 211 (356)
T 3ro6_B 150 EHLALGFRVLKVKLCG-DEEQDFERLRRLHETLAG-RAVVRVD------PN---------QSY-DRDGLLRLDRLVQELG 211 (356)
T ss_dssp HHHHTTCCEEEEECCS-CHHHHHHHHHHHHHHHTT-SSEEEEE------CT---------TCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEEeCC-CHHHHHHHHHHHHHHhCC-CCEEEEe------CC---------CCC-CHHHHHHHHHHHHhcC
Confidence 3567899998887543 677888877777665422 2222221 01 123 5788988865 458
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC--CeEeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG--VRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G--i~KINi~T~l 149 (192)
++++- -+ -|.-|++-+++|++.+ ++|++.- .|=.+.++++++++.| +.=||+....
T Consensus 212 i~~iE---------qP--~~~~d~~~~~~l~~~~---~iPIa~d-E~~~~~~~~~~~~~~~~~~d~v~~k~~~ 269 (356)
T 3ro6_B 212 IEFIE---------QP--FPAGRTDWLRALPKAI---RRRIAAD-ESLLGPADAFALAAPPAACGIFNIKLMK 269 (356)
T ss_dssp CCCEE---------CC--SCTTCHHHHHTSCHHH---HHTEEES-TTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred CCEEE---------CC--CCCCcHHHHHHHHhcC---CCCEEeC-CcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence 88774 11 1233888889888887 5998875 5666788899999876 7778886543
|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=82.90 E-value=9.8 Score=26.66 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=49.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+++++|.+.+++..+|.+-+-+. .|..| +++++.|++......+|+++-.+.+ ..+...++.+.|+.-
T Consensus 34 ~~~~~~al~~~~~~~~dlvl~D~~---------lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~-~~~~~~~~~~~ga~~ 103 (136)
T 3t6k_A 34 AASGEEALQQIYKNLPDALICDVL---------LPGIDGYTLCKRVRQHPLTKTLPILMLTAQG-DISAKIAGFEAGAND 103 (136)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESC---------CSSSCHHHHHHHHHHSGGGTTCCEEEEECTT-CHHHHHHHHHHTCSE
T ss_pred eCCHHHHHHHHHhCCCCEEEEeCC---------CCCCCHHHHHHHHHcCCCcCCccEEEEecCC-CHHHHHHHHhcCcce
Confidence 467889999999999999888752 13333 7888999874222368999887765 445577888888654
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=82.87 E-value=1.6 Score=39.39 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=56.1
Q ss_pred HHHHHhhhhCCcEEEEecCcCC-----------CCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 69 QAEEFIDETDIDALAVCIGNVH-----------GKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~H-----------G~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+..+-+++.|+|.|.++-+|.- |.|++ .| .+.++.+.+|++.+.. ++|++-=||--.++ +..++
T Consensus 315 ~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG-~~~~~~sl~~i~~v~~~v~~-~iPVIg~GGI~s~~-DA~e~ 391 (443)
T 1tv5_A 315 EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG-AKLKDISTKFICEMYNYTNK-QIPIIASGGIFSGL-DALEK 391 (443)
T ss_dssp HHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEE-HHHHHHHHHHHHHHHHHTTT-CSCEEEESSCCSHH-HHHHH
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccccccCCcCC-CcchHHHHHHHHHHHHHcCC-CCcEEEECCCCCHH-HHHHH
Confidence 3444567889999999877642 23322 11 1235778888887721 49999999876555 57788
Q ss_pred HhcCCeEeecchHHHH
Q 029540 136 IERGVRKFNVNTEVRK 151 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~ 151 (192)
+..|..=|-++|.+..
T Consensus 392 l~aGAd~Vqigrall~ 407 (443)
T 1tv5_A 392 IEAGASVCQLYSCLVF 407 (443)
T ss_dssp HHTTEEEEEESHHHHH
T ss_pred HHcCCCEEEEcHHHHh
Confidence 8999999999999763
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=82.75 E-value=15 Score=32.70 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=76.0
Q ss_pred hhh-cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 3 AIV-LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~-~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++ .||+.+=+..-..+.++.++..+.|-+.. + ++.+=.+ . +.--++++|.+|+++.. +.
T Consensus 199 ~~~~~Gf~~~KlKvG~~~~~~Di~rv~avRea~-p-d~~L~vD------a----------N~~w~~~~Ai~~~~~L~-~~ 259 (441)
T 3vc5_A 199 LIGEYGFRSIKLKGGVFPPEQEAEAIQALRDAF-P-GLPLRLD------P----------NAAWTVETSIRVGRALD-GV 259 (441)
T ss_dssp HHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHS-T-TCCEEEE------C----------TTCSCHHHHHHHHHHTT-TT
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhC-C-CCcEecc------C----------CCCCCHHHHHHHHHHHH-HH
Confidence 344 49999988877778888888777776655 2 3222111 1 11235889999987753 11
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+. |-. .|--|++-+++|++.+ ++|++. |-|=.+..+++++++.| +.=+|+..
T Consensus 260 --l~-------~iE-eP~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~l~~~a~dii~~d~ 312 (441)
T 3vc5_A 260 --LE-------YLE-DPTPGIDGMARVAAEV---PMPLAT-NMCVVTPEHLPAAVERRPIGVLLIDH 312 (441)
T ss_dssp --CS-------EEE-CCSSSHHHHHHHHTTS---SSCEEE-SSSCCSGGGHHHHHHHCCCSEEEECH
T ss_pred --HH-------Hhh-ccCCCHHHHHHHHhcC---CCCEEe-CCCCCCHHHHHHHHHhCCCCEEeech
Confidence 11 222 4656899999999887 699987 77778888999999877 55567753
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=82.75 E-value=2.6 Score=32.52 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=52.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+++++|.+.+++.++|.+=+-+- .|..+ ++++++|++.....++|+++-++. .+...++.+.|+..
T Consensus 11 ~~~~~~a~~~~~~~~~dlvl~D~~---------~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~---~~~~~~~~~~Ga~~ 78 (237)
T 3cwo_X 11 ATNGREAVEKYKELKPDIVTMDIT---------MPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ---QAMVIEAIKAGAKD 78 (237)
T ss_dssp CCSSSTTHHHHHHHCCSCEEEECC---------STTSSHHHHHHHHHHHSSSCCEEEECCSST---HHHHHHHHHTTCCE
T ss_pred CCCHHHHHHHHHhcCCCEEEEeCC---------CCCCCHHHHHHHHHHhCCCCCEEEEECCCC---HHHHHHHHHCCHHh
Confidence 467788999999999996655541 12222 788899887654446888876554 78899999999988
Q ss_pred eecch
Q 029540 143 FNVNT 147 (192)
Q Consensus 143 INi~T 147 (192)
+=+.+
T Consensus 79 ~l~kp 83 (237)
T 3cwo_X 79 FIVNT 83 (237)
T ss_dssp EEESH
T ss_pred eEeCC
Confidence 76543
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=17 Score=29.12 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCC-ccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGL-TVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~-~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.+-++||+.|=+....+|.- .-...+++.+.+.++|+.+-+-.+.....+-.. .....+......+++.++.++-|+.
T Consensus 25 ~~~~~G~~~vEl~~~~~~~~-~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~ 103 (294)
T 3vni_A 25 KVAKLGFDILEIAASPLPFY-SDIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVH 103 (294)
T ss_dssp HHHHHTCSEEEEESTTGGGC-CHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCCEEEecCcccCCc-CHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999887665321 123456788889999999987322211100000 0000011223334567777788999
Q ss_pred EEEEecCcCCCCCCCC-CCCCC--------HHHHHHHHhhhccCCccEEeecCC------CCCHHHHHHHHh---cCCeE
Q 029540 81 ALAVCIGNVHGKYPSS-GPNLK--------LDLLKDLHALSSKKGVLLVLHGAS------GLSAELIKGCIE---RGVRK 142 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~-~p~ld--------~~~L~~I~~~~~~~~iPLVlHGgS------G~~~e~~~~~i~---~Gi~K 142 (192)
.+-+. .|+.++.. .+..+ .+.|+++.+...+.+|.|++|=-. ..+.+++.+.++ .--.+
T Consensus 104 ~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~vg 180 (294)
T 3vni_A 104 LIGGA---LYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVKQVDHNNVK 180 (294)
T ss_dssp EEEES---TTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEE
T ss_pred eeecc---ccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCEE
Confidence 88643 35433200 01122 234455555554558999999432 234555555543 23578
Q ss_pred eecchHHHH
Q 029540 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
++++|.-..
T Consensus 181 ~~~D~~h~~ 189 (294)
T 3vni_A 181 VMLDTFHMN 189 (294)
T ss_dssp EEEEHHHHH
T ss_pred EEEEhhhhH
Confidence 888876543
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=82.66 E-value=14 Score=32.48 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=70.7
Q ss_pred hhhhcCCCEeEeeCCC----CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029540 2 EAIVLGFDSLMVDGSH----LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
++++.||+.+=+-|.. ++..++++...++++..++. ++.+=.+ .+ ..+ ++++|.+|+
T Consensus 135 ~~~~~G~~~iKl~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vD------aN---------~~~-~~~~A~~~~ 198 (405)
T 3rr1_A 135 ALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLD------FH---------GRV-SAPMAKVLI 198 (405)
T ss_dssp HHHHTTCCEEEEESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEE------CC---------SCB-CHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEE------CC---------CCC-CHHHHHHHH
Confidence 4567899999886653 12233444444444444431 2222111 01 123 578888885
Q ss_pred h---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 75 D---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 75 ~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+ +-|++++-- + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+..
T Consensus 199 ~~L~~~~i~~iEe----------P-~~~~d~~~~~~l~~~~---~iPIa~-dE~i~~~~~~~~~l~~~a~d~v~~d~ 260 (405)
T 3rr1_A 199 KELEPYRPLFIEE----------P-VLAEQAETYARLAAHT---HLPIAA-GERMFSRFDFKRVLEAGGVSILQPDL 260 (405)
T ss_dssp HHHGGGCCSCEEC----------S-SCCSSTHHHHHHHTTC---SSCEEE-CTTCCSHHHHHHHHHHCCCSEECCBT
T ss_pred HHHHhcCCCEEEC----------C-CCcccHHHHHHHHhcC---CCCEEe-cCCcCCHHHHHHHHHHhCCCeEEECh
Confidence 5 457777741 1 1334889999999887 699876 55566788899999876 66677754
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=23 Score=30.50 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=75.3
Q ss_pred hhhhc-CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029540 2 EAIVL-GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~-GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++. ||+.+=+.-...+.++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|+++ .
T Consensus 161 ~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~-~~~l~vD------an---------~~~-~~~~a~~~~~~l~~~ 223 (372)
T 3tj4_A 161 RAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDS-AVRIAID------GN---------GKW-DLPTCQRFCAAAKDL 223 (372)
T ss_dssp HHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCT-TCEEEEE------CT---------TCC-CHHHHHHHHHHTTTS
T ss_pred HHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCC-CCcEEee------CC---------CCC-CHHHHHHHHHHHhhc
Confidence 35667 999988887766778877777766654421 2222111 01 124 48899888765 4
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
+++++-= + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.=||+..
T Consensus 224 ~i~~iEq---------P--~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~~~d~v~~k~ 279 (372)
T 3tj4_A 224 DIYWFEE---------P--LWYDDVTSHARLARNT---SIPIAL-GEQLYTVDAFRSFIDAGAVAYVQPDV 279 (372)
T ss_dssp CEEEEES---------C--SCTTCHHHHHHHHHHC---SSCEEE-CTTCCSHHHHHHHHHTTCCSEECCCT
T ss_pred CCCEEEC---------C--CCchhHHHHHHHHhhc---CCCEEe-CCCccCHHHHHHHHHcCCCCEEEeCc
Confidence 6666631 1 2334889999999887 699875 55667788999999887 66677754
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=82.53 E-value=5.5 Score=37.75 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCe-EEEeccccccCCCCCccccccccCCCHHHHHHHhhh------hCCcE-EEEecCc
Q 029540 17 HLPFKDNISHTKYISFLAHSKGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE------TDIDA-LAVCIGN 88 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~------TgvD~-LAvaiGt 88 (192)
..+.+||++...+.+++|+.++-. ++..+|.--+.|| ..-|+|+-+.++++. .|+|. .-+.+.-
T Consensus 182 ~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Ed--------asrtd~dfl~ev~~aa~eaG~~Gad~~~~I~LpD 253 (644)
T 3hq1_A 182 RANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPES--------YTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPA 253 (644)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEET--------GGGSCHHHHHHHHHHHHHHHCCCSSSCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcc--------cCCCCHHHHHHHHHHHHHhcCCCCCceeEEEecC
Confidence 457899999999999888765311 0011111111122 234899988887764 36772 2334444
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029540 89 VHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 89 ~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
.=|.- .|.-=.++++.+++.+.. .++||-+|. ..|+.-...-.|+..|+..|+
T Consensus 254 TvG~~---tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vd 309 (644)
T 3hq1_A 254 TVEMT---TPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIE 309 (644)
T ss_dssp SSCCS---CHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred CCccc---CHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEE
Confidence 43332 254344667777776532 137787777 889999999999999999885
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.52 E-value=2.5 Score=36.01 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=39.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|-+-||+|-- + .+ .+|++++..+. .+.+|+ +|| -+++.+.+|. +||||.
T Consensus 211 eA~~aGaD~I~ld~~--~-~~---~~k~av~~v~~-~ipi~A----sGG--------------It~eni~~~a-~tGvD~ 264 (286)
T 1x1o_A 211 EALEAGADLILLDNF--P-LE---ALREAVRRVGG-RVPLEA----SGN--------------MTLERAKAAA-EAGVDY 264 (286)
T ss_dssp HHHHHTCSEEEEESC--C-HH---HHHHHHHHHTT-SSCEEE----ESS--------------CCHHHHHHHH-HHTCSE
T ss_pred HHHHcCCCEEEECCC--C-HH---HHHHHHHHhCC-CCeEEE----EcC--------------CCHHHHHHHH-HcCCCE
Confidence 688999999999983 2 23 35566666543 467766 222 2357777765 899999
Q ss_pred EEE
Q 029540 82 LAV 84 (192)
Q Consensus 82 LAv 84 (192)
++|
T Consensus 265 IsV 267 (286)
T 1x1o_A 265 VSV 267 (286)
T ss_dssp EEC
T ss_pred EEE
Confidence 987
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=82.52 E-value=15 Score=31.95 Aligned_cols=68 Identities=22% Similarity=0.123 Sum_probs=49.6
Q ss_pred CHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-Ce
Q 029540 66 DVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VR 141 (192)
Q Consensus 66 ~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~ 141 (192)
++++|.+|+++ .|++++-- + -|.-|++-+++|++.+ ++|++. |.|=...++++++++.| +.
T Consensus 213 ~~~~A~~~~~~L~~~~i~~iEq----------P-~~~~~~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~~~d 277 (401)
T 3sbf_A 213 FPNQAIQFAKEVEQYKPYFIED----------I-LPPNQTEWLDNIRSQS---SVSLGL-GELFNNPEEWKSLIANRRID 277 (401)
T ss_dssp CHHHHHHHHHHHGGGCCSCEEC----------S-SCTTCGGGHHHHHTTC---CCCEEE-CTTCCSHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHhcCCCEEEC----------C-CChhHHHHHHHHHhhC---CCCEEe-CCccCCHHHHHHHHhcCCCC
Confidence 58899998654 57777741 1 1334788899999887 699776 66667788999999887 66
Q ss_pred EeecchH
Q 029540 142 KFNVNTE 148 (192)
Q Consensus 142 KINi~T~ 148 (192)
=||+...
T Consensus 278 ~v~~k~~ 284 (401)
T 3sbf_A 278 FIRCHVS 284 (401)
T ss_dssp EECCCGG
T ss_pred EEecCcc
Confidence 6777643
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=82.47 E-value=3.3 Score=32.95 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=46.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+..++.+.+.+.|+|++=+-+ .-|.|-++ ...-++.+++|++.+ +.|+.+|--.--|++.++.+.+.|+.=|.
T Consensus 23 ~~~~~~i~~~~~~G~d~i~l~~--~dg~f~~~-~~~~~~~i~~l~~~~---~~~~~v~l~vnd~~~~v~~~~~~Gad~v~ 96 (230)
T 1rpx_A 23 SKLGEQVKAIEQAGCDWIHVDV--MDGRFVPN-ITIGPLVVDSLRPIT---DLPLDVHLMIVEPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEE--EBSSSSSC-BCCCHHHHHHHGGGC---CSCEEEEEESSSHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEee--ccCCcccc-cccCHHHHHHHHhcc---CCcEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 4555666677777888766544 44544321 223467777777665 46777766554455567777777777665
Q ss_pred cch
Q 029540 145 VNT 147 (192)
Q Consensus 145 i~T 147 (192)
+.-
T Consensus 97 vh~ 99 (230)
T 1rpx_A 97 VHC 99 (230)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=82.44 E-value=8.8 Score=32.68 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=50.1
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee----cCCCCCHHHHHHHHhcCCeEe
Q 029540 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH----GASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH----GgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.|+.|. +-|+|++-+ ||. | +.+.+++|.+.+ ++|++.- |.|. .-..++.-++|++-|
T Consensus 171 ~ra~ay~-eAGAd~i~~-----e~~-----~--~~~~~~~i~~~~---~iP~~~N~~~~g~~p--~~~~~eL~~~G~~~v 232 (295)
T 1xg4_A 171 ERAQAYV-EAGAEMLFP-----EAI-----T--ELAMYRQFADAV---QVPILANITEFGATP--LFTTDELRSAHVAMA 232 (295)
T ss_dssp HHHHHHH-HTTCSEEEE-----TTC-----C--SHHHHHHHHHHH---CSCBEEECCSSSSSC--CCCHHHHHHTTCSEE
T ss_pred HHHHHHH-HcCCCEEEE-----eCC-----C--CHHHHHHHHHHc---CCCEEEEecccCCCC--CCCHHHHHHcCCCEE
Confidence 3444443 679999876 332 2 678888898888 6998532 3333 233566778899999
Q ss_pred ecchHHHHHHHHHhc
Q 029540 144 NVNTEVRKAYMDSLS 158 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~ 158 (192)
=++..+..+.+.+++
T Consensus 233 ~~~~~~~~aa~~a~~ 247 (295)
T 1xg4_A 233 LYPLSAFRAMNRAAE 247 (295)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EEChHHHHHHHHHHH
Confidence 999988877777654
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=82.30 E-value=4.6 Score=36.02 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=80.3
Q ss_pred hhhhcCCCEeEeeCCC-------C-------------CHHHHHHHHHHHHHHHHhC-CC-eEEEeccccccCCCCCcccc
Q 029540 2 EAIVLGFDSLMVDGSH-------L-------------PFKDNISHTKYISFLAHSK-GM-LVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-------l-------------~~eeNi~~Tk~vv~~Ah~~-gv-~VEaElG~i~g~e~~~~~~~ 59 (192)
+|.++||+-|-|-+.+ | ++|.-.+...+|++-.++. |- .|-. ++...+. ..
T Consensus 176 ~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~---r~~~~~~-~~--- 248 (407)
T 3tjl_A 176 KAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGI---RISPWAT-FQ--- 248 (407)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEE---EECTTCC-GG---
T ss_pred HHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEE---EECcccc-cC---
Confidence 6899999999999887 1 4788888888888887652 21 1211 2221111 10
Q ss_pred ccccCC-C----HHHHHHHh------hhhC--CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029540 60 YEAKLT-D----VNQAEEFI------DETD--IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 60 ~~~~~T-~----peea~~Fv------~~Tg--vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
..... + .++...++ ++.| +|+|.++-|...+.+.. .|..+.+.++.+++.. ++|++.=|+--
T Consensus 249 -g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~-~~~~~~~~~~~ir~~~---~~PvI~~Ggi~ 323 (407)
T 3tjl_A 249 -NMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDV-SEEDQAGDNEFVSKIW---KGVILKAGNYS 323 (407)
T ss_dssp -GCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEEC-CGGGCCCCSHHHHHHC---CSEEEEESCGG
T ss_pred -CCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcC-CccchhHHHHHHHHHh---CCCEEecCCCC
Confidence 00011 2 33444444 4448 99999997766554332 2332334466777777 58999988644
Q ss_pred CCHH---HHHHHHhcCCeEeecchHHH
Q 029540 127 LSAE---LIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 127 ~~~e---~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+++ .+..+++.+..-|=+++.+.
T Consensus 324 ~~~dA~~~i~~~~~g~aDlVa~GR~~i 350 (407)
T 3tjl_A 324 YDAPEFKTLKEDIADKRTLVGFSRYFT 350 (407)
T ss_dssp GGTTTTHHHHHHHTTSSEEEECSHHHH
T ss_pred CHHHHHHHHHhhccCCCeEEEeChhhh
Confidence 3331 23333334578888888763
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=82.27 E-value=5 Score=36.67 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=55.6
Q ss_pred CCHHH---HHHHhhhhCCcEEEEecCcCC-CC--------------------------CCC--------CCCCCCHHHHH
Q 029540 65 TDVNQ---AEEFIDETDIDALAVCIGNVH-GK--------------------------YPS--------SGPNLKLDLLK 106 (192)
Q Consensus 65 T~pee---a~~Fv~~TgvD~LAvaiGt~H-G~--------------------------y~~--------~~p~ld~~~L~ 106 (192)
.|++. +.+-+++.|+|+|.+.+++.. |. +.+ ..|.+.++.++
T Consensus 257 ~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~ 336 (511)
T 1kbi_A 257 SDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIE 336 (511)
T ss_dssp SSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHH
Confidence 55654 444556689999999998643 21 000 12567899999
Q ss_pred HHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029540 107 DLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 107 ~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
.|++.+ ++|+++-|... .++.+++.+.|+.=|-+
T Consensus 337 ~lr~~~---~~PvivKgv~~--~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 337 ELKKKT---KLPIVIKGVQR--TEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHC---SSCEEEEEECS--HHHHHHHHHTTCSEEEE
T ss_pred HHHHHh---CCcEEEEeCCC--HHHHHHHHHcCCCEEEE
Confidence 999988 69999997543 67899999999998887
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=82.22 E-value=19 Score=31.27 Aligned_cols=112 Identities=9% Similarity=0.090 Sum_probs=73.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
++++.||+.+=+.-.. +.++.++..+.|.+..-+ ++.+=.+ .+ ..+ ++++|.+|++ +.|
T Consensus 161 ~~~~~G~~~iKiKvG~-~~~~d~~~v~avR~a~g~-d~~l~vD------an---------~~~-~~~~A~~~~~~l~~~~ 222 (389)
T 3ozy_A 161 GWVEQGFTAAKLKVGR-APRKDAANLRAMRQRVGA-DVEILVD------AN---------QSL-GRHDALAMLRILDEAG 222 (389)
T ss_dssp HHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCT-TSEEEEE------CT---------TCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCEEeeccCC-CHHHHHHHHHHHHHHcCC-CceEEEE------CC---------CCc-CHHHHHHHHHHHHhcC
Confidence 3567899998887554 677777777776665421 3333211 11 123 4788888854 468
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHH-hhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLH-ALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~-~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
++++-- + -|.-|++-+++|+ +.+ ++|++. |.|=.+.++++++++.| +.=||+.
T Consensus 223 i~~iEq---------P--~~~~d~~~~~~l~~~~~---~iPIa~-dE~i~~~~~~~~~i~~~~~d~v~ik 277 (389)
T 3ozy_A 223 CYWFEE---------P--LSIDDIEGHRILRAQGT---PVRIAT-GENLYTRNAFNDYIRNDAIDVLQAD 277 (389)
T ss_dssp CSEEES---------C--SCTTCHHHHHHHHTTCC---SSEEEE-CTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred CCEEEC---------C--CCcccHHHHHHHHhcCC---CCCEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 888841 1 1334889899998 777 699876 55556778899999876 6667764
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=82.18 E-value=16 Score=32.51 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=50.2
Q ss_pred CHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-Ce
Q 029540 66 DVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VR 141 (192)
Q Consensus 66 ~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~ 141 (192)
++++|.+|+++ .+++++-= + -|.-|++-+++|++.+ ++|++. |.|=.+.++++++++.| +.
T Consensus 252 ~~~~A~~~~~~L~~~~i~~iEe---------P--~~~~d~~~~~~l~~~~---~iPIa~-dE~~~~~~~~~~~i~~~a~d 316 (440)
T 3t6c_A 252 TPINAIHMAKALEPYQLFFLED---------P--VAPENTEWLKMLRQQS---STPIAM-GELFVNVNEWKPLIDNKLID 316 (440)
T ss_dssp CHHHHHHHHHHTGGGCCSEEEC---------S--SCGGGGGGHHHHHHHC---CSCEEE-CTTCCSHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHhhhcCCCEEEC---------C--CChhhHHHHHHHHhhc---CCCEEe-CcccCCHHHHHHHHHcCCcc
Confidence 58899998654 57887741 1 1334788899999887 699877 66677888999999877 66
Q ss_pred EeecchH
Q 029540 142 KFNVNTE 148 (192)
Q Consensus 142 KINi~T~ 148 (192)
=||+...
T Consensus 317 ~v~~k~~ 323 (440)
T 3t6c_A 317 YIRCHIS 323 (440)
T ss_dssp EECCCGG
T ss_pred ceeechh
Confidence 6777643
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=82.08 E-value=8.9 Score=32.35 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred hcCCCEeEeeCCC-------------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 5 VLGFDSLMVDGSH-------------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 5 ~~GFtSVM~D~S~-------------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
++||+.+.+ |++ .+++|-+..|+.|++-+.. ..|=+.++.-+ |.+|+++.
T Consensus 35 ~aG~d~ilv-Gdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~--~~vvaD~pfgs--------------y~~~~~a~ 97 (264)
T 1m3u_A 35 DEGLNVMLV-GDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPN--CLLLADLPFMA--------------YATPEQAF 97 (264)
T ss_dssp HHTCCEEEE-CTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTT--SEEEEECCTTS--------------SSSHHHHH
T ss_pred HcCCCEEEE-CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCC--CcEEEECCCCC--------------cCCHHHHH
Confidence 578888877 644 3789999999999887752 33436665531 34777766
Q ss_pred ----HHhhhhCCcEEEE
Q 029540 72 ----EFIDETDIDALAV 84 (192)
Q Consensus 72 ----~Fv~~TgvD~LAv 84 (192)
+|++ +|++++=+
T Consensus 98 ~~a~rl~k-aGa~aVkl 113 (264)
T 1m3u_A 98 ENAATVMR-AGANMVKI 113 (264)
T ss_dssp HHHHHHHH-TTCSEEEC
T ss_pred HHHHHHHH-cCCCEEEE
Confidence 5776 99886543
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=81.52 E-value=5.3 Score=33.35 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=55.4
Q ss_pred CHHHHHHHh---hhhC-CcEEEEecCc-----CC--------------CCCCCCCCC---CCHHHHHHHHhhhccCCccE
Q 029540 66 DVNQAEEFI---DETD-IDALAVCIGN-----VH--------------GKYPSSGPN---LKLDLLKDLHALSSKKGVLL 119 (192)
Q Consensus 66 ~peea~~Fv---~~Tg-vD~LAvaiGt-----~H--------------G~y~~~~p~---ld~~~L~~I~~~~~~~~iPL 119 (192)
++++..+|+ ++.| +|.|.++-.+ .+ |.|.+ +. ..++.++++++.+. ++|+
T Consensus 172 ~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg--~~~~p~~~~~i~~v~~~~~--~ipv 247 (314)
T 2e6f_A 172 DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGG--KYILPTALANVNAFYRRCP--DKLV 247 (314)
T ss_dssp CHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEES--GGGHHHHHHHHHHHHHHCT--TSEE
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCc--ccccHHHHHHHHHHHHhcC--CCCE
Confidence 556655554 6789 9999876544 11 12221 21 23677788887762 5999
Q ss_pred EeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 120 VLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 120 VlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+-=||-.. .++..+++..|..=|-++|.+..
T Consensus 248 i~~GGI~~-~~da~~~l~~GAd~V~ig~~~l~ 278 (314)
T 2e6f_A 248 FGCGGVYS-GEDAFLHILAGASMVQVGTALQE 278 (314)
T ss_dssp EEESSCCS-HHHHHHHHHHTCSSEEECHHHHH
T ss_pred EEECCCCC-HHHHHHHHHcCCCEEEEchhhHh
Confidence 98886554 56688888999999999999864
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=81.18 E-value=5.7 Score=33.20 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=75.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-++|.+.+.+= .||+|| ..++.+.|+++|+.+ +=-+ ..-|+++..++..+.+.=-.
T Consensus 111 ~~~~aGvdG~Iip--DLP~eE----~~~~~~~~~~~Gl~~---I~lv-------------aP~t~~eRi~~ia~~a~gFi 168 (252)
T 3tha_A 111 KAKSLGICALIVP--ELSFEE----SDDLIKECERYNIAL---ITLV-------------SVTTPKERVKKLVKHAKGFI 168 (252)
T ss_dssp HHHHTTEEEEECT--TCCGGG----CHHHHHHHHHTTCEE---CEEE-------------ETTSCHHHHHHHHTTCCSCE
T ss_pred HHHHcCCCEEEeC--CCCHHH----HHHHHHHHHHcCCeE---EEEe-------------CCCCcHHHHHHHHHhCCCeE
Confidence 5778898888763 389987 457888999988764 2112 12355677777766653333
Q ss_pred EEEec-CcCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHHH
Q 029540 82 LAVCI-GNVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 82 LAvai-Gt~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
-.||. |+. |. ...+ -.+.+++|++.+ ++|++. |.|+ ..++++++.+ +..=+=|+|.+-+..
T Consensus 169 Y~Vs~~GvT-G~----~~~~~~~~~~~v~~vr~~~---~~Pv~v--GfGIst~e~a~~~~~-~ADGVIVGSAiVk~i 234 (252)
T 3tha_A 169 YLLASIGIT-GT----KSVEEAILQDKVKEIRSFT---NLPIFV--GFGIQNNQDVKRMRK-VADGVIVGTSIVKCF 234 (252)
T ss_dssp EEECCSCSS-SC----SHHHHHHHHHHHHHHHTTC---CSCEEE--ESSCCSHHHHHHHTT-TSSEEEECHHHHHHT
T ss_pred EEEecCCCC-Cc----ccCCCHHHHHHHHHHHHhc---CCcEEE--EcCcCCHHHHHHHHh-cCCEEEECHHHHHHH
Confidence 34552 322 11 1111 135677777776 699998 5566 5678888766 577888899885443
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=81.01 E-value=13 Score=31.50 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=70.6
Q ss_pred hcCCCEeEeeCC-------------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029540 5 VLGFDSLMVDGS-------------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 5 ~~GFtSVM~D~S-------------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
++||+.+.. |+ ..+++|-+..|+.|++-+.. ..|=+.++.-+ .-.+|+++.
T Consensus 35 ~aG~d~ilv-GdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~--~~vvaD~pfgs-------------y~~s~~~a~ 98 (275)
T 1o66_A 35 DAGVEMLLV-GDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKN--AMIVSDLPFGA-------------YQQSKEQAF 98 (275)
T ss_dssp HTTCCEEEE-CTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSS--SEEEEECCTTS-------------SSSCHHHHH
T ss_pred HcCCCEEEE-CHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCC--CeEEEECCCCC-------------ccCCHHHHH
Confidence 578887766 43 34799999999999887752 33446665532 125677766
Q ss_pred ----HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC-----------C---CC---CHH
Q 029540 72 ----EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA-----------S---GL---SAE 130 (192)
Q Consensus 72 ----~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg-----------S---G~---~~e 130 (192)
+|++ +|++++=+==| . +..+.|+..++ .+||++-|=| - |- -++
T Consensus 99 ~na~rl~k-aGa~aVklEdg-----------~---e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~ 162 (275)
T 1o66_A 99 AAAAELMA-AGAHMVKLEGG-----------V---WMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA 162 (275)
T ss_dssp HHHHHHHH-TTCSEEEEECS-----------G---GGHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------CHHH
T ss_pred HHHHHHHH-cCCcEEEECCc-----------H---HHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEEEeChHHHHH
Confidence 5776 99997665311 1 22344444443 2699874433 0 11 133
Q ss_pred HHHHH---HhcCCeEeec---chHHHHHHHHHhc
Q 029540 131 LIKGC---IERGVRKFNV---NTEVRKAYMDSLS 158 (192)
Q Consensus 131 ~~~~~---i~~Gi~KINi---~T~l~~a~~~~~~ 158 (192)
-+++| .+.|..=|=+ -+++...+++.+.
T Consensus 163 ~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l~ 196 (275)
T 1o66_A 163 LLNDAKAHDDAGAAVVLMECVLAELAKKVTETVS 196 (275)
T ss_dssp HHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCcEEEEecCCHHHHHHHHHhCC
Confidence 34333 3556544433 4577777777663
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=80.93 E-value=4.6 Score=35.44 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=43.5
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCC
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi 140 (192)
.+++..+++++.|++.+-+.++. |+ ....+.+.|+++-+..+..+.|+.+|-...-. .+.++.+.+.|+
T Consensus 159 ~~~e~~~l~~~~G~~~i~~~~~~-~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~ 228 (501)
T 2vm8_A 159 IQEEMEALVKDHGVNSFLVYMAF-KD-----RFQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGI 228 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEESSS-TT-----TTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHhCCceEEEEeecc-CC-----CCCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCC
Confidence 35778888877888877765542 22 13456777777766655557999999753211 234445555554
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=80.91 E-value=12 Score=27.62 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
++.++|.+.+++...|.+=.-+ ..|..| ++++++|++.-....+|+++=-+.+ ..++..++.+.|+.
T Consensus 44 ~~g~~al~~~~~~~~DlillD~---------~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~-~~~~~~~~~~~Ga~ 111 (134)
T 3to5_A 44 DDGLTALPMLKKGDFDFVVTDW---------NMPGMQGIDLLKNIRADEELKHLPVLMITAEA-KREQIIEAAQAGVN 111 (134)
T ss_dssp SSHHHHHHHHHHHCCSEEEEES---------CCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC-CHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhCCCCEEEEcC---------CCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC-CHHHHHHHHHCCCC
Confidence 4568899999999999887764 146655 8999999864322369988776555 45668889999975
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=80.51 E-value=2.6 Score=38.77 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCC---CCHHHHHHHHhhhccCCccEEeecCCCCC-H---------H
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPN---LKLDLLKDLHALSSKKGVLLVLHGASGLS-A---------E 130 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~---------e 130 (192)
+.||.+..+..++-|.|.|-+.= .-|... .|. .+++.+++|.+.+ ++|+-+=||--.. | +
T Consensus 279 ~~dp~~~A~~~~~~Ga~~l~~~d--l~~~~~--~~~~~~~~~~~i~~i~~~~---~ipi~vgGGIr~~~d~~~~~~~~~~ 351 (555)
T 1jvn_A 279 LGKPVQLAQKYYQQGADEVTFLN--ITSFRD--CPLKDTPMLEVLKQAAKTV---FVPLTVGGGIKDIVDVDGTKIPALE 351 (555)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEE--EC---C--CCGGGCHHHHHHHHHTTTC---CSCEEEESSCSCEECTTCCEECHHH
T ss_pred cCCHHHHHHHHHHcCCCEEEEEe--CCcccc--ccCCCchHHHHHHHHHhhC---CCcEEEeCccccchhcccccchHHH
Confidence 45787766666677999887652 112221 122 2467777777666 6999998876432 2 6
Q ss_pred HHHHHHhcCCeEeecchHHHH
Q 029540 131 LIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.+++..+.|+.||-++|....
T Consensus 352 ~a~~~l~aGad~V~igt~~~~ 372 (555)
T 1jvn_A 352 VASLYFRSGADKVSIGTDAVY 372 (555)
T ss_dssp HHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEECCHHhh
Confidence 799999999999999999864
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.37 E-value=4.3 Score=34.33 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=57.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.++..|+|+++--++..|...+....+.+.+.+...+ +.+-. .|.+.. +. ....+ ++..++++ .|++
T Consensus 75 ~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~----~~~~~---~~~~~l~~-~g~~ 142 (426)
T 2z00_A 75 AAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHP-AAALTE---KQ----EGKTL---TPAGLLRE-AGAV 142 (426)
T ss_dssp HHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECC-EECSBG---GG----CSSSB---CCHHHHHH-HTCC
T ss_pred HHHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEE-EEEeec---CC----ChhhH---HHHHHHHH-cCCE
Confidence 4788999999877665554444445556666666655 44411 111110 00 00112 34455554 4765
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
++ |. |+. +..+.+.|+++-+...+.+.|+.+|-.
T Consensus 143 ~i----~~-~~~-----~~~~~~~l~~~~~~a~~~g~~v~~H~~ 176 (426)
T 2z00_A 143 LL----TD-DGR-----TNEDAGVLAAGLLMAAPLGLPVAVHAE 176 (426)
T ss_dssp EE----EC-TTS-----CCCCHHHHHHHHHHHGGGTCCEEECCC
T ss_pred EE----EC-CCc-----CCCCHHHHHHHHHHHHhhCCEEEEeCC
Confidence 44 32 443 345677888877766666899999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 192 | ||||
| d1gvfa_ | 284 | c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase { | 2e-47 | |
| d1rvga_ | 305 | c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP | 6e-47 | |
| d1dosa_ | 358 | c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP | 5e-39 |
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Score = 154 bits (390), Expect = 2e-47
Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+
Sbjct: 90 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAE 149
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
A LTD +A+ F++ T +D+LAV IG HG Y S P + L ++ V LV
Sbjct: 150 SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY-SKTPKIDFQRLAEIR---EVVDVPLV 205
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHGAS + E ++ IE GV K NV TE++ A+ ++ P+ D + M +A
Sbjct: 206 LHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDA 265
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV K+ + GS+ +
Sbjct: 266 MKEVVRNKINVCGSANRI 283
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Score = 153 bits (388), Expect = 6e-47
Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 25/217 (11%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ A+ GF S+M+D SH F+ N+ T+ + AH+ G+ VEAELGRL+G E+ + V++
Sbjct: 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVL- 118
+A LT+ +A F++ T D LAV IG HG Y G P + L+ + L VL
Sbjct: 149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLH 208
Query: 119 -----------------LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL---- 157
+ A+G+ E IK I G+ K N +T++R A+ +
Sbjct: 209 GASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREAL 268
Query: 158 -SRPKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
PK D + A+EA+K VV +M LFGS G+A
Sbjct: 269 NKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA 305
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Score = 134 bits (339), Expect = 5e-39
Identities = 52/227 (22%), Positives = 81/227 (35%), Gaps = 36/227 (15%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG--LTVE 58
F S M+D S ++NI GM +E ELG G EDG +
Sbjct: 131 AATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHM 190
Query: 59 DYEAKLTDVNQA----EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK 114
D A T E + +A GNVHG Y + L +L+D SK
Sbjct: 191 DASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSK 250
Query: 115 KGVL------LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL----------- 157
K L V HG SG +A+ IK + GV K N++T+ + A + +
Sbjct: 251 KHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYL 310
Query: 158 -------------SRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191
++ D + + + +M A + + + +
Sbjct: 311 QGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDV 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 192 | |||
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 100.0 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 100.0 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 100.0 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.29 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 97.14 | |
| d2fiqa1 | 420 | Putative tagatose 6-phosphate kinase 1 GatZ {Esche | 96.98 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.65 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 96.33 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 96.31 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.97 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.9 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 95.52 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 95.45 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 94.93 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 94.38 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 94.12 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.05 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 93.53 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.42 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 93.32 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 93.22 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 92.59 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 91.95 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 91.72 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 91.43 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 90.57 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 90.45 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 90.07 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 90.05 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 89.86 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 89.51 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 89.39 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 89.31 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 88.85 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 88.77 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 88.63 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 88.6 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 88.18 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 87.98 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 87.94 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 87.03 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 86.99 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 86.96 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 86.62 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 86.57 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 85.67 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 85.49 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 84.99 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 84.65 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 84.36 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 83.81 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 83.76 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 83.62 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 83.55 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 83.34 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 83.01 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 82.22 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 81.97 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 81.87 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 81.74 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 81.55 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 80.91 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 80.35 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 80.17 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 80.05 |
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-72 Score=485.56 Aligned_cols=188 Identities=39% Similarity=0.626 Sum_probs=170.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||+|||+.||++|++||++|++||+|||+|||.||+......+..||+|+||++|+++||||
T Consensus 90 ~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD 169 (284)
T d1gvfa_ 90 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVD 169 (284)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCS
T ss_pred HHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCC
Confidence 47999999999999999999999999999999999999999999999999988765445567899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc--
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS-- 158 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~-- 158 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++++++||+||||+|+++.+|.++++
T Consensus 170 ~LAvaiGt~HG~y~~-~p~l~~~~L~~i~~~~---~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 245 (284)
T d1gvfa_ 170 SLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAW 245 (284)
T ss_dssp EEEECSSCCSSCCSS-CCCCCHHHHHHHHHHC---CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHH
T ss_pred EEeeecCceeeccCC-CCccccchhhhhhccc---cCCeEeeCCCCCCHHHHHHHHHcCeEEEEechHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999999 6999999999999999999999999999999999999999987
Q ss_pred ---CCC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 159 ---RPK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 159 ---~~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|+ .||+.++..++++|+++++++|++|||.|||
T Consensus 246 l~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~gKa 283 (284)
T d1gvfa_ 246 FAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 283 (284)
T ss_dssp HHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 355 5999999999999999999999999999997
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=8.9e-71 Score=480.17 Aligned_cols=189 Identities=41% Similarity=0.627 Sum_probs=173.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++|++||||||+|||.||+...++.+..||+|+||++|+++||||
T Consensus 89 ~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD 168 (305)
T d1rvga_ 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGAD 168 (305)
T ss_dssp HHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCS
T ss_pred HHHHhcCCceEEEcCccccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCcc
Confidence 37999999999999999999999999999999999999999999999999999876555567899999999999999999
Q ss_pred EEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCC---------------------CCCHHHHHHHHhc
Q 029540 81 ALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIER 138 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgS---------------------G~~~e~~~~~i~~ 138 (192)
+|||||||+||.|++. +|+|||+||++|++.+ ++|||||||| |+|+|||++||++
T Consensus 169 ~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~---~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~ 245 (305)
T d1rvga_ 169 YLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISL 245 (305)
T ss_dssp EEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC---CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHT
T ss_pred HhhhhhhhhhcccCCCCcccchHHHHHHHHhcc---CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHc
Confidence 9999999999999862 4779999999999998 6999999999 9999999999999
Q ss_pred CCeEeecchHHHHHHHHHhc-----CCC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029540 139 GVRKFNVNTEVRKAYMDSLS-----RPK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 139 Gi~KINi~T~l~~a~~~~~~-----~~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
||+||||+|+++.+|.++++ +|+ .||+.++.+++++|+++++++|++|||.|||
T Consensus 246 GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~gKA 305 (305)
T d1rvga_ 246 GIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA 305 (305)
T ss_dssp TEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred CeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999987 344 5999999999999999999999999999997
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-65 Score=452.01 Aligned_cols=189 Identities=25% Similarity=0.298 Sum_probs=164.2
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccc--cccccCCCHHHH----HHHhhh
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE--DYEAKLTDVNQA----EEFIDE 76 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~--~~~~~~T~peea----~~Fv~~ 76 (192)
+++.||||||||||++||||||++||++|++||++|++||+|||+|||.||+.... ..+..||+|+|| ++|+++
T Consensus 133 ~~~~gfsSVMiDgS~l~~eeNi~~Tk~vve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~ 212 (358)
T d1dosa_ 133 TGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKI 212 (358)
T ss_dssp HSSCSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTT
T ss_pred hCCCCCccccCCCCcCCHHHHHHHHHHHHHHHhhhCCeEEEeeeeeecccCCccccccchhhccCCHHHHHHHHHHHhcc
Confidence 34444999999999999999999999999999999999999999999999876432 335679999999 578888
Q ss_pred hCCcEEEEecCcCCCCCCCCC----CCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 77 TDIDALAVCIGNVHGKYPSSG----PNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~----p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
||||+|||||||+||.|++++ |+|+++++++|++.++- .++|||||||||+|+|+|++||++||+||||+|+++
T Consensus 213 tgvD~LAvaiGt~HG~Yk~~~~~l~p~l~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdlr 292 (358)
T d1dosa_ 213 SPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQ 292 (358)
T ss_dssp CSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred CccceeeeeccchhhhcCCCCccCCchhhHHHHHHHHHHhCCCCcccceeccCCCCCcHHHHHHHHHcCCeEEeeChHHH
Confidence 999999999999999998643 56666666777776621 123499999999999999999999999999999999
Q ss_pred HHHHHHhcC-----C----------------C---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029540 151 KAYMDSLSR-----P----------------K---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 151 ~a~~~~~~~-----~----------------~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
.||++++++ | + .|||+++.+++++|+++|+++|++|||.+|
T Consensus 293 ~a~~~~ir~~~~~n~~~~~~~~~~~~~~~~~~k~~fDPrk~l~~a~~am~~~v~~~~~~fgs~nk 357 (358)
T d1dosa_ 293 WATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDV 357 (358)
T ss_dssp HHHHHHHHHHHHHHGGGSSSSEEETTEEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhChhhhhccccCcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999862 1 1 289999999999999999999999999997
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.29 E-value=0.0087 Score=46.32 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=97.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEE--------Eecc----ccccCCCCCccc--------ccc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVE--------AELG----RLSGTEDGLTVE--------DYE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VE--------aElG----~i~g~e~~~~~~--------~~~ 61 (192)
+|+++|.+-|.+=.-.++.+|.++..+++.++|+.+++.+= .++| |++ ..+..... ...
T Consensus 25 ~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~~~lA~~~~adGvHl~-~~~~~~~~~~~~~~~~iig 103 (206)
T d1xi3a_ 25 EALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLG-PEDMPIEVAKEIAPNLIIG 103 (206)
T ss_dssp HHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEEC-TTSCCHHHHHHHCTTSEEE
T ss_pred HHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechhHHHHHhccCceEeec-cccccHhhhhhcccccccc
Confidence 68999999999988889999999999999999999987652 1222 222 11111000 001
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCC-CCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029540 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHG-KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG-~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
....+++++++- ...|+|.+.++ .+-- ..+++.+.+.++.|+++.+.. ++|++.-|| +..+++..+.++|.
T Consensus 104 ~s~h~~~e~~~a-~~~g~DYi~~g--pvf~T~tk~~~~~~g~~~l~~~~~~~---~~Pv~AiGG--I~~~ni~~~~~~Ga 175 (206)
T d1xi3a_ 104 ASVYSLEEALEA-EKKGADYLGAG--SVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGG--INKDNAREVLKTGV 175 (206)
T ss_dssp EEESSHHHHHHH-HHHTCSEEEEE--CSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESS--CCTTTHHHHHTTTC
T ss_pred cccCCHHHHHHH-HhcCCCEEEec--cccccccccccccccHHHHHHHHHhc---CCCEEEECC--CCHHHHHHHHHhCC
Confidence 124688888774 46799988765 3210 011223558899999998877 699999996 67778999999999
Q ss_pred eEeecchHHH
Q 029540 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=|=+.+.+.
T Consensus 176 ~gvAvis~I~ 185 (206)
T d1xi3a_ 176 DGIAVISAVM 185 (206)
T ss_dssp SEEEESHHHH
T ss_pred CEEEEhHHHH
Confidence 9888877775
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=97.14 E-value=0.0033 Score=48.01 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=76.6
Q ss_pred hhhcCCCEeEeeCCCCCH-HHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 3 AIVLGFDSLMVDGSHLPF-KDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~-eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
++++|.+.|.+|....+. ++. ..+.+++++..+..+-.- ..-++++++++ ..+-|+|.
T Consensus 84 ~~~agad~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~-----------------~~~~t~~~a~~-~~~~g~d~ 142 (222)
T d1y0ea_ 84 LIESQCEVIALDATLQQRPKET---LDELVSYIRTHAPNVEIM-----------------ADIATVEEAKN-AARLGFDY 142 (222)
T ss_dssp HHHHTCSEEEEECSCSCCSSSC---HHHHHHHHHHHCTTSEEE-----------------EECSSHHHHHH-HHHTTCSE
T ss_pred HHHcCCCEEEeeccccccccch---HHHHHHHHHHhCCceEEe-----------------ecCCCHHHHHH-HHHcCCCe
Confidence 456788888887665432 222 234445554433211110 01356778877 45789999
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029540 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+..++.++..... ....++++++++++.+ ++|++.=| |+ +.+++++++++|..-|-++|.+.
T Consensus 143 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~iPVia~G--GI~t~~d~~~~~~~GAdgV~iGsAi~ 208 (222)
T d1y0ea_ 143 IGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV---DAKVIAEG--NVITPDMYKRVMDLGVHCSVVGGAIT 208 (222)
T ss_dssp EECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC---CSEEEEES--SCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred EEEeccCCcccccCccchhhHHHHHHHHHhcC---CCcEEEeC--CCCCHHHHHHHHHcCCCEEEEchhhc
Confidence 876555444444321 1223467777777776 69999655 56 46889999999999999999874
|
| >d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1 GatZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: GatZ-like domain: Putative tagatose 6-phosphate kinase 1 GatZ species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.0073 Score=52.43 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=100.6
Q ss_pred hhhhcCCCEeEeeCCC--------CCHHHHHHHHHHHHHHHHhCCC-----eEEEeccc---cccCCCCCccccccccCC
Q 029540 2 EAIVLGFDSLMVDGSH--------LPFKDNISHTKYISFLAHSKGM-----LVEAELGR---LSGTEDGLTVEDYEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~--------l~~eeNi~~Tk~vv~~Ah~~gv-----~VEaElG~---i~g~e~~~~~~~~~~~~T 65 (192)
..+++||+.|++|.|. |+.++=.++|.++.++|-..-- .+==|+|. ++|... ....+-..|
T Consensus 112 ~~v~aGF~kIHiD~Sm~ca~dp~~l~~e~va~Raa~L~~~ae~~a~~~~~~~i~yvIGTEVp~pGGa~---~~~~~~~vT 188 (420)
T d2fiqa1 112 AYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEA---SAIQSVHIT 188 (420)
T ss_dssp HHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECSSCC-------------CCCC
T ss_pred HHHHcCCCEEEecCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCccc---ccccccccC
Confidence 3589999999999995 5668888889999888864321 11123332 122111 111234679
Q ss_pred CHHHHHHHhhh--------------hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEe--ecCCCCCH
Q 029540 66 DVNQAEEFIDE--------------TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL--HGASGLSA 129 (192)
Q Consensus 66 ~peea~~Fv~~--------------TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl--HGgSG~~~ 129 (192)
+|+++++.++- +.|=.|-|--|+-=+-. +.-..|++..+++.+.++. -.||+ |-+-=.++
T Consensus 189 ~~~~~~~tl~~h~~aF~~~gl~~~~~rvi~lVVQpGvef~~~--~V~~y~~~~a~~L~~~ik~--~~lvfEAHSTDYQt~ 264 (420)
T d2fiqa1 189 HVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHS--NIIHYQPQEAQALAQWIEN--TRMVYEAHSTDYQTR 264 (420)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSS--CEECCCGGGGHHHHHHHTT--SSCEEEESCCTTCCH
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeeCCC--cccCCCHHHHHHHHHHhcc--CCEEEEeccccCCCH
Confidence 99999988752 23345777777643311 1234678888888888864 34666 66666899
Q ss_pred HHHHHHHhcCCeEeecchHHHHHHHHHh
Q 029540 130 ELIKGCIERGVRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 130 e~~~~~i~~Gi~KINi~T~l~~a~~~~~ 157 (192)
+.+++.++.|+.=.||+=+|-.++.+++
T Consensus 265 ~aL~~LV~d~faiLKVGP~LTFa~reAL 292 (420)
T d2fiqa1 265 TAYWELVRDHFAILKVGPALTFALREAI 292 (420)
T ss_dssp HHHHHHHHTTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCcceEeeChHHhHHHHHHH
Confidence 9999999999999999999999988886
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.65 E-value=0.016 Score=48.21 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=91.1
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCcccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~ 59 (192)
++|.++||+-|-+-+.|= ++|.-.+...||++-.++. +-.+-. .+... +...
T Consensus 150 ~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~v---r~~~~-~~~~--- 222 (337)
T d1z41a1 150 ARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFV---RVSAS-DYTD--- 222 (337)
T ss_dssp HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEE---EEECC-CCST---
T ss_pred HHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceE---Eeccc-cccc---
Confidence 368899999999998642 5788888999999888863 222211 22221 1111
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCC-CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVH-GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~H-G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
.--++++..+| +++.|+|++-++.|+.- ..+.. .|....+..+.|++.+ ++|++.-|+-. +.++..++
T Consensus 223 ---~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~-~~~~~~~~~~~ik~~~---~~pvi~~G~i~-~~~~ae~~ 294 (337)
T d1z41a1 223 ---KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINV-FPGYQVSFAEKIREQA---DMATGAVGMIT-DGSMAEEI 294 (337)
T ss_dssp ---TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHHHHHHHHHHH---CCEEEECSSCC-SHHHHHHH
T ss_pred ---CccchhhhHHHHHHHHHcCCccccccccccccccccc-CCcccHHHHHHHHHhc---CceEEEeCCcC-CHHHHHHH
Confidence 12345666665 56789999999988643 22222 3667888889999998 69999888543 46778889
Q ss_pred HhcC-CeEeecchHH
Q 029540 136 IERG-VRKFNVNTEV 149 (192)
Q Consensus 136 i~~G-i~KINi~T~l 149 (192)
++.| +-=|=++..+
T Consensus 295 l~~g~~D~V~~gR~~ 309 (337)
T d1z41a1 295 LQNGRADLIFIGREL 309 (337)
T ss_dssp HHTTSCSEEEECHHH
T ss_pred HHCCCcceehhhHHH
Confidence 9998 4466666554
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=96.33 E-value=0.021 Score=48.02 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=89.4
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHh-CCCeEEEecc-ccccCCCCCccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHS-KGMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+.|-|-+.|= ++|.-.+...||++-.++ .|-. =+| .+...+...
T Consensus 167 ~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d---~i~~r~s~~~~~~--- 240 (363)
T d1vyra_ 167 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD---RIGIRVSPIGTFQ--- 240 (363)
T ss_dssp HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG---GEEEEECCSSCBT---
T ss_pred HHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCC---Ccceeeccccccc---
Confidence 378999999999999883 578889999999988875 2211 011 121111100
Q ss_pred cccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 59 DYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 59 ~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+....-.+.+++.+++ ++.|+|+|=+|.|+..+. +......-+.+++.+ ++|++--| +.+.+...++
T Consensus 241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~-----~~~~~~~~~~~~~~~---~~~vi~~G--~~t~~~ae~~ 310 (363)
T d1vyra_ 241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG-----KPYSEAFRQKVRERF---HGVIIGAG--AYTAEKAEDL 310 (363)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC-----CCCCHHHHHHHHHHC---CSEEEEES--SCCHHHHHHH
T ss_pred chhhcccchHHHHHHHHHHHhcCCeeeecccCCccCC-----ccccHHHHHHHHHhc---CceEEecC--CCCHHHHHHH
Confidence 0011234556666664 468999999998876542 334556667888887 57877766 5688999999
Q ss_pred HhcC-CeEeecchHH
Q 029540 136 IERG-VRKFNVNTEV 149 (192)
Q Consensus 136 i~~G-i~KINi~T~l 149 (192)
++.| +-=|-++..+
T Consensus 311 l~~G~~DlV~~gR~l 325 (363)
T d1vyra_ 311 IGKGLIDAVAFGRDY 325 (363)
T ss_dssp HHTTSCSEEEESHHH
T ss_pred HHCCCcceehhhHHH
Confidence 9999 4577777666
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=96.31 E-value=0.094 Score=42.47 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=81.6
Q ss_pred hhhhcCCCEe---EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH----HHHHh
Q 029540 2 EAIVLGFDSL---MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ----AEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSV---M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee----a~~Fv 74 (192)
++.++|-+-| ++=++..|-++++++.+++.+.|++.|+.+=.|+=.-+.. . ....++|+. ++.|.
T Consensus 114 ~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~-~-------~~~~~~~~~i~~a~r~~~ 185 (291)
T d1to3a_ 114 AVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPR-C-------GDKFDREQAIIDAAKELG 185 (291)
T ss_dssp HHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCS-S-------CSCCCHHHHHHHHHHHHT
T ss_pred HHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCC-c-------ccccchHHHHHHHHHHHH
Confidence 4567776665 4445667778899999999999999999988884221111 1 112344543 44444
Q ss_pred hhhCCcEEEEec-CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH----HHhcCCeEeecchHH
Q 029540 75 DETDIDALAVCI-GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG----CIERGVRKFNVNTEV 149 (192)
Q Consensus 75 ~~TgvD~LAvai-Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~----~i~~Gi~KINi~T~l 149 (192)
+.|+|.+=+-+ |+..+ ...-+...++++.+.. ++|.|+=|| |.|.++|.+ |.+.|.+=+=++-.+
T Consensus 186 -e~GaDi~K~~~p~~~~~-----~~~~~~~~~~~~~~~~---~~p~vvLs~-G~~~~~f~~~l~~A~~aGa~G~~~GR~i 255 (291)
T d1to3a_ 186 -DSGADLYKVEMPLYGKG-----ARSDLLTASQRLNGHI---NMPWVILSS-GVDEKLFPRAVRVAMEAGASGFLAGRAV 255 (291)
T ss_dssp -TSSCSEEEECCGGGGCS-----CHHHHHHHHHHHHHTC---CSCEEECCT-TSCTTTHHHHHHHHHHTTCCEEEESHHH
T ss_pred -hcCCcEEEEecCCCchh-----hhHHHHHHHHHHhhcC---CCcEEEEeC-CCCHHHHHHHHHHHHHCCCeEEEeChhh
Confidence 57999887752 22211 0111233344444444 799777666 457776655 667887777776444
Q ss_pred HHHHHHHhc
Q 029540 150 RKAYMDSLS 158 (192)
Q Consensus 150 ~~a~~~~~~ 158 (192)
|.+.+.
T Consensus 256 ---w~~~~~ 261 (291)
T d1to3a_ 256 ---WSSVIG 261 (291)
T ss_dssp ---HGGGTT
T ss_pred ---hhCccc
Confidence 444443
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.97 E-value=0.1 Score=39.58 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~K 142 (192)
-+++++++.. .+.|+|++.+...+..+.+.. .+..++. +.++.... ++|++-=| |+ +.+++.++.++|..=
T Consensus 137 v~t~~~a~~a-~~~Gad~i~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~---~ipvia~G--GI~t~~d~~~al~~GAd~ 208 (230)
T d1yxya1 137 ISTFDEGLVA-HQAGIDFVGTTLSGYTPYSRQ-EAGPDVA-LIEALCKA---GIAVIAEG--KIHSPEEAKKINDLGVAG 208 (230)
T ss_dssp CSSHHHHHHH-HHTTCSEEECTTTTSSTTSCC-SSSCCHH-HHHHHHHT---TCCEEEES--CCCSHHHHHHHHTTCCSE
T ss_pred CCCHHHHHHH-HhcCCCEEEeecccccccccc-cchHHHH-HHHHHhcC---CCeEEEeC--CCCCHHHHHHHHHcCCCE
Confidence 4678888774 588999998766555554433 2333443 44455555 69999755 77 568899999999999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
|-++|.+.
T Consensus 209 V~vGsAi~ 216 (230)
T d1yxya1 209 IVVGGAIT 216 (230)
T ss_dssp EEECHHHH
T ss_pred EEEChhhc
Confidence 99999763
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.0098 Score=47.51 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc-
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID- 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD- 80 (192)
+.+++|++-|.+..+.+ +|....+++++.....-+.+--.+....+...-.........-.++.+..+.+.+.|+.
T Consensus 91 ~~l~~Ga~kviigs~~~---~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e 167 (253)
T d1thfd_ 91 ELILRGADKVSINTAAV---ENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGE 167 (253)
T ss_dssp HHHHTTCSEEEESHHHH---HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSE
T ss_pred hHHhcCCCEEEEChHHh---hChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCE
Confidence 46889999999965544 44555555555544433555555443311100000000111234577777778888887
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|--.|.+ -|.. ..+|+++++++++.+ ++|+...||-+..++ +.++.+.|+.-+=+++.+.
T Consensus 168 ii~tdI~~-dGt~----~G~d~~ll~~i~~~~---~~pvi~~GGv~s~~d-i~~l~~~g~~gvivgsal~ 228 (253)
T d1thfd_ 168 ILLTSIDR-DGTK----SGYDTEMIRFVRPLT---TLPIIASGGAGKMEH-FLEAFLAGADAALAASVFH 228 (253)
T ss_dssp EEEEETTT-TTSC----SCCCHHHHHHHGGGC---CSCEEEESCCCSHHH-HHHHHHTTCSEEEESHHHH
T ss_pred EEEEEecc-cCcc----CCccccccccccccc---cceEEEecCCCCHHH-HHHHHHCCCCEEEEchHHH
Confidence 55555543 3433 335999999998877 699999999987655 8888899999999998773
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.1 Score=43.04 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=88.4
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+.|-+-+.+ + ++|.=++.+.||++-.++. +..|-- ++...+ ...
T Consensus 148 ~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~---R~s~~d-~~~- 222 (330)
T d1ps9a1 148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIY---RLSMLD-LVE- 222 (330)
T ss_dssp HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEE---EEEEEC-CST-
T ss_pred HHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEe---cccccc-ccc-
Confidence 36899999999999865 2 4788899999999887752 222222 222211 111
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCC---CCC-CCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029540 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSS---GPN-LKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~---~p~-ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
.-.+++++.+++ ++.|+|++=++.|+.+..++.. .|. ......++|++.+ ++|++.-|+- .+.+
T Consensus 223 -----~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i-~~~~ 293 (330)
T d1ps9a1 223 -----DGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV---SLPLVTTNRI-NDPQ 293 (330)
T ss_dssp -----TCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC---SSCEEECSSC-CSHH
T ss_pred -----CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhC---CceEEEeCCC-CCHH
Confidence 123566666654 5579999999999887665431 122 3334456777766 6998886643 3567
Q ss_pred HHHHHHhcCCe-EeecchHH
Q 029540 131 LIKGCIERGVR-KFNVNTEV 149 (192)
Q Consensus 131 ~~~~~i~~Gi~-KINi~T~l 149 (192)
+..++++.|.+ =|-++..+
T Consensus 294 ~ae~~l~~g~~D~V~~gR~~ 313 (330)
T d1ps9a1 294 VADDILSRGDADMVSMARPF 313 (330)
T ss_dssp HHHHHHHTTSCSEEEESTHH
T ss_pred HHHHHHHCCCcchhHhhHHH
Confidence 78999999944 67766654
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=95.45 E-value=0.093 Score=41.00 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=94.1
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeE--E------Eecc----ccccCCCCCccc------c-
Q 029540 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLV--E------AELG----RLSGTEDGLTVE------D- 59 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~V--E------aElG----~i~g~e~~~~~~------~- 59 (192)
+|++.|-+-|=+ |++.++.++-++..+++.++|+.+++.+ - .++| |++. .+..... .
T Consensus 38 ~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liInd~~~lA~~~~adGvHl~~-~d~~~~~~r~~~~~~ 116 (226)
T d2tpsa_ 38 KALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQ-EDANAKEVRAAIGDM 116 (226)
T ss_dssp HHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTCSEEEECT-TSSCHHHHHHHHTTS
T ss_pred HHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEcCCHHHHhhccCCEEEecc-ccchhhhhhhcccce
Confidence 588999999866 6788899999999999999999888663 2 1222 2221 1111000 0
Q ss_pred -ccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029540 60 -YEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 -~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
....-.+++++++ ..+.|+|.+. +|.+.--. +++ .|..-++.++.+.... .++|++.-|| +..+++.++.
T Consensus 117 iig~S~h~~~e~~~-a~~~g~DYi~--~gpvf~T~sK~~~~~~~~~~~~~~~~~~~--~~~Pv~AiGG--I~~~ni~~l~ 189 (226)
T d2tpsa_ 117 ILGVSAHTMSEVKQ-AEEDGADYVG--LGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGG--ITIDNAAPVI 189 (226)
T ss_dssp EEEEEECSHHHHHH-HHHHTCSEEE--ECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESS--CCTTTSHHHH
T ss_pred eeeeeccchHHHHH-HHhCcCCeEE--EecccccccccccccccccchhHHHHHhc--CCCCEEEecC--CCHHHHHHHH
Confidence 0011346888877 4457999865 66664222 221 2445677788776532 2699999995 6778899999
Q ss_pred hcCCeEeecchHHH
Q 029540 137 ERGVRKFNVNTEVR 150 (192)
Q Consensus 137 ~~Gi~KINi~T~l~ 150 (192)
+.|+.=|=+.+.+.
T Consensus 190 ~~Ga~giAvis~I~ 203 (226)
T d2tpsa_ 190 QAGADGVSMISAIS 203 (226)
T ss_dssp HTTCSEEEESHHHH
T ss_pred HhCCCEEEEhHHhh
Confidence 99999888887775
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=94.93 E-value=0.23 Score=38.13 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=82.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
+|.+.||+.+-+--..-++++-++..+.+.+.... ++.+=.+ . ...| ++++|.+|+++ .+
T Consensus 22 ~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~-~~~l~vD------a---------N~~~-~~~~A~~~~~~l~~~~ 84 (227)
T d2mnra1 22 TAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGD-DFGIMVD------Y---------NQSL-DVPAAIKRSQALQQEG 84 (227)
T ss_dssp HHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCT-TSEEEEE------C---------TTCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCC-CcEEEEe------c---------cccC-ChHHHHHHHHHhhhch
Confidence 57788999999987777888888887777766632 2222111 0 1134 78999999764 57
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe-EeecchHH
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR-KFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~-KINi~T~l 149 (192)
++++-=- -+.-|++.+++|++.+ ++||.+ |-+=.+.++++.+++.|.. -+|+....
T Consensus 85 ~~~iEeP-----------~~~~~~~~~~~l~~~~---~ipia~-gE~~~~~~~~~~~~~~~~~d~~~~d~~~ 141 (227)
T d2mnra1 85 VTWIEEP-----------TLQHDYEGHQRIQSKL---NVPVQM-GENWLGPEEMFKALSIGACRLAMPDAMK 141 (227)
T ss_dssp CSEEECC-----------SCTTCHHHHHHHHHTC---SSCEEE-CTTCCSHHHHHHHHHTTCCSEECCBTTT
T ss_pred hhhhcCc-----------ccccchhhhHHHHHHc---CCcccc-CceeEeechhhhhHhcCceeeeeccccc
Confidence 7776411 1335889999999888 699876 8888999999999998854 55655433
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.38 E-value=0.6 Score=37.21 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=92.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|-+.|-+..+.|+.+ ..+++.++||.+|..+=.| ..+.+|+.+-+ ..|.+.
T Consensus 120 ea~~~GADaiLLI~~~L~~~----~l~~l~~~a~~lgl~~LvE-------------------vh~~~El~~a~-~~~a~i 175 (247)
T d1a53a_ 120 DAYNLGADTVLLIVKILTER----ELESLLEYARSYGMEPLIE-------------------INDENDLDIAL-RIGARF 175 (247)
T ss_dssp HHHHHTCSEEEEEGGGSCHH----HHHHHHHHHHTTTCCCEEE-------------------ECSHHHHHHHH-HTTCSE
T ss_pred HHHHhhcchhhhhhhhccHH----HHHHHHHHHHHHhhhHHhh-------------------cCCHHHHHHHH-hCCCCe
Confidence 46678999999999999875 4678999999998776444 24456766644 679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029540 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+.|.--|.| ..+.|+++..++...+.. ++++|-=+|-.. .++++++.++|+.=|=|+|.|..
T Consensus 176 IGINnRnL~------t~~vd~~~~~~L~~~ip~-~~~~IaESGI~t-~~dv~~l~~~G~davLIGeaLmk 237 (247)
T d1a53a_ 176 IGINSRDLE------TLEINKENQRKLISMIPS-NVVKVAESGISE-RNEIEELRKLGVNAFLIGSSLMR 237 (247)
T ss_dssp EEEESBCTT------TCCBCHHHHHHHHHHSCT-TSEEEEESCCCC-HHHHHHHHHTTCCEEEECHHHHH
T ss_pred EeeeccChh------hhhhhhhHHHHHHhhCCC-CCeEEEecCCCC-HHHHHHHHHCCCCEEEECHHHcC
Confidence 988866664 477899999999888753 577776666544 45699999999999999999864
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=94.12 E-value=0.51 Score=37.83 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=77.4
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC---------------CCCCCHHHHHHHHhhhccCCccEEeecCCCCC
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS---------------GPNLKLDLLKDLHALSSKKGVLLVLHGASGLS 128 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~---------------~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~ 128 (192)
..+|+.+++.+ +.|+|.+-|+ |-+|..-.. ..--..+.|.++..... ++|+..=||--.+
T Consensus 169 ~~~~~~a~~~~-~~GaD~i~v~--~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~--~v~viadGGIr~g 243 (329)
T d1p0ka_ 169 GMSKASAGKLY-EAGAAAVDIG--GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFP--ASTMIASGGLQDA 243 (329)
T ss_dssp CCCHHHHHHHH-HHTCSEEEEE--C---------------CCGGGGTTCSCCHHHHHHHHHHHCT--TSEEEEESSCCSH
T ss_pred cchHHHHHHHH-hcCCCEEEEc--CCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcC--CceEEEcCCcccH
Confidence 46788888865 6899988887 333321100 01123556666766654 6999999998877
Q ss_pred HHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 129 AELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 129 ~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.| +-||+.+|-.=|-+++.+.++....= ..=+....+.+++.++..|.++|+.
T Consensus 244 ~D-v~KAlalGAdaV~iGr~~l~al~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~ 296 (329)
T d1p0ka_ 244 LD-VAKAIALGASCTGMAGHFLKALTDSG-------EEGLLEEIQLILEELKLIMTVLGAR 296 (329)
T ss_dssp HH-HHHHHHTTCSEEEECHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HH-HHHHHHcCCCchhccHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66 88999999999999999988764421 1223455677888888899998864
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=94.05 E-value=0.076 Score=42.03 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=61.0
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+.||-+..++.++.|+|.|.+.-= =+.+. ....+++.+++|.+.+ .+|+.+=||-- +.+++++.+..|+.|
T Consensus 28 ~~gdP~~~a~~~~~~g~dei~ivDl--d~~~~--~~~~~~~~i~~i~~~~---~~pi~vgGGIr-~~e~i~~~l~~Ga~k 99 (253)
T d1thfd_ 28 DSGDPVELGKFYSEIGIDELVFLDI--TASVE--KRKTMLELVEKVAEQI---DIPFTVGGGIH-DFETASELILRGADK 99 (253)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEEEES--SCSSS--HHHHHHHHHHHHHTTC---CSCEEEESSCC-SHHHHHHHHHTTCSE
T ss_pred ECCCHHHHHHHHHHcCCCEEEEEee--ccccc--CcccHHHHHHHHHhcc---Cccceeecccc-cchhhhhHHhcCCCE
Confidence 4678988888888899999988421 11222 1345788889888876 69999966544 556899999999999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
|-++|...
T Consensus 100 viigs~~~ 107 (253)
T d1thfd_ 100 VSINTAAV 107 (253)
T ss_dssp EEESHHHH
T ss_pred EEEChHHh
Confidence 99999765
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=93.53 E-value=0.36 Score=38.04 Aligned_cols=110 Identities=10% Similarity=0.065 Sum_probs=76.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCC----------CCC--------CCCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKY----------PSS--------GPNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y----------~~~--------~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
.+|++++. +.+.|+|.+.|+ | ||.- ... ...--.+.|.++++... ++|+..-||--
T Consensus 171 ~~~e~a~~-~~~aGvd~i~vs--n-~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~--~i~Ii~dGGIr 244 (310)
T d1vcfa1 171 LSREAALA-LRDLPLAAVDVA--G-AGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP--HLPLVASGGVY 244 (310)
T ss_dssp CCHHHHHH-HTTSCCSEEECC--C-BTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS--SSCEEEESSCC
T ss_pred ccHHHHHH-HHHcCCCEEEec--c-ccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcC--CCeEEeCCCCC
Confidence 67888887 457899988765 4 4331 000 00011345566666553 69999999887
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029540 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.+.| +-||+.+|-.=+-++|.+.++.... .+-.....+.+++.++..|.++|..
T Consensus 245 ~g~D-v~KALalGAdaV~iGr~~l~~~~~G--------~~gv~~~l~~l~~El~~~m~~~G~~ 298 (310)
T d1vcfa1 245 TGTD-GAKALALGADLLAVARPLLRPALEG--------AERVAAWIGDYLEELRTALFAIGAR 298 (310)
T ss_dssp SHHH-HHHHHHHTCSEEEECGGGHHHHTTC--------HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred chHH-HHHHHHhCCCEeeEhHHHHHHhccC--------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6655 8889999999999999998764321 1235567788899999999999975
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.42 E-value=0.11 Score=41.24 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=61.3
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+.||-+..+..+..|+|.|.+.= .-+.+.. ...+++.+++|...+ .+|+-+=||-- +.|++++++..|+.|
T Consensus 30 ~~~dP~~~a~~~~~~gadei~ivD--l~~~~~~--~~~~~~~i~~i~~~~---~~pi~~gGGIr-~~e~~~~ll~~G~~k 101 (252)
T d1h5ya_ 30 EVGDPVEMAVRYEEEGADEIAILD--ITAAPEG--RATFIDSVKRVAEAV---SIPVLVGGGVR-SLEDATTLFRAGADK 101 (252)
T ss_dssp EEECHHHHHHHHHHTTCSCEEEEE--CCCCTTT--HHHHHHHHHHHHHHC---SSCEEEESSCC-SHHHHHHHHHHTCSE
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEe--ccccccc--cccHHHHHHHHHhhc---CCcceeecccc-hhhhhhhHhhcCCcE
Confidence 356898877777789999987752 2222221 345789999998877 69999988644 558899999999999
Q ss_pred eecchHHHH
Q 029540 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
|.++|....
T Consensus 102 Vii~s~~~~ 110 (252)
T d1h5ya_ 102 VSVNTAAVR 110 (252)
T ss_dssp EEESHHHHH
T ss_pred EEecccccC
Confidence 999998643
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.32 E-value=1.6 Score=35.32 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=84.2
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+.|=+=+.|= ++|.=.+...||++-.++. +..|--=++.-...+++..
T Consensus 156 ~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~- 234 (340)
T d1djqa1 156 KRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQI- 234 (340)
T ss_dssp HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSC-
T ss_pred HHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCC-
Confidence 368999999999988543 5788888888888887742 2222222211100000000
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCC-----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH
Q 029540 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSS-----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL 131 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~-----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~ 131 (192)
. .-.++..+.. +.+.++|++-++.|+.... +... .+....+..+.|++.+ ++|+..=| +-.+.++
T Consensus 235 ---~-~e~~~~~~~~-l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pVi~~G-~i~~~~~ 305 (340)
T d1djqa1 235 ---E-AEVDGQKFVE-MADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS---KKPVLGVG-RYTDPEK 305 (340)
T ss_dssp ---C-TTTHHHHHHH-HHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC---SSCEEECS-CCCCHHH
T ss_pred ---c-hhhhHHHHHH-HHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHc---CCeEEEEC-CCCCHHH
Confidence 0 0011223333 4468899999999976431 1100 1334556678888887 58966654 4456888
Q ss_pred HHHHHhcC-CeEeecchHH
Q 029540 132 IKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 132 ~~~~i~~G-i~KINi~T~l 149 (192)
..++++.| +.=|-++..+
T Consensus 306 a~~~l~~G~aDlV~~gR~~ 324 (340)
T d1djqa1 306 MIEIVTKGYADIIGCARPS 324 (340)
T ss_dssp HHHHHHTTSCSBEEESHHH
T ss_pred HHHHHHCCCccchhhHHHH
Confidence 99999999 5677777665
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.22 E-value=0.68 Score=35.70 Aligned_cols=115 Identities=9% Similarity=-0.030 Sum_probs=74.6
Q ss_pred hhhhcCCCEeEeeCCC------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh
Q 029540 2 EAIVLGFDSLMVDGSH------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
+.++.||+.+=|-... .++++.++..+.|-+.... ++.+=.. . ...| ++++|.+|++
T Consensus 33 ~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~-~~~l~vD------a---------N~~~-~~~~A~~~~~ 95 (255)
T d1rvka1 33 TLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGP-DIRLMID------A---------FHWY-SRTDALALGR 95 (255)
T ss_dssp HHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCT-TSEEEEE------C---------CTTC-CHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCC-ccceecc------c---------cccc-ccchhhhhhh
Confidence 4577899999997653 3477777777666555432 2222111 0 1123 5889998866
Q ss_pred h---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC-eEeecch
Q 029540 76 E---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV-RKFNVNT 147 (192)
Q Consensus 76 ~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi-~KINi~T 147 (192)
+ .++.+|== + -+.-|++-+++|++.+ ++|+++......+.++++.+++.|. .=+|+..
T Consensus 96 ~l~~~~l~~iEe----------P-~~~~d~~~~~~l~~~~---~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~ 157 (255)
T d1rvka1 96 GLEKLGFDWIEE----------P-MDEQSLSSYKWLSDNL---DIPVVGPESAAGKHWHRAEWIKAGACDILRTGV 157 (255)
T ss_dssp HHHTTTCSEEEC----------C-SCTTCHHHHHHHHHHC---SSCEEECSSCSSHHHHHHHHHHTTCCSEEEECH
T ss_pred hcccchhhhhcC----------C-cccccHHHHHHHHHhc---ccceeehhhcccchhhhhhhhhhchhhhccccc
Confidence 5 46666541 1 2336899999999988 6999887766656677888887764 4456653
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=92.59 E-value=0.088 Score=43.81 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=57.5
Q ss_pred CHHHHHHHhhhhCCcEEEEe-c-CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC----------HHHHH
Q 029540 66 DVNQAEEFIDETDIDALAVC-I-GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS----------AELIK 133 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAva-i-Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~----------~e~~~ 133 (192)
||-++.+...+.|+|.|-+= + ++--|.+. -..+++.+++|.+.+ .+||-.=||--.= .|+-+
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~---~~~~~~~I~~i~~~~---~vPi~vGGGIrsi~di~~~~~~~~e~A~ 122 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLK---DTPMLEVLKQAAKTV---FVPLTVGGGIKDIVDVDGTKIPALEVAS 122 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGG---GCHHHHHHHHHTTTC---CSCEEEESSCSCEECTTCCEECHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCC---CchHHHHHHhhcccc---ceeEEEecCcccHHHhhhccchhhHHHH
Confidence 89888888889999999872 2 22222221 124577777776665 6999999985542 46789
Q ss_pred HHHhcCCeEeecchHHH
Q 029540 134 GCIERGVRKFNVNTEVR 150 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~l~ 150 (192)
+.++.|+.||.++|...
T Consensus 123 ~ll~~GadKVvI~T~ai 139 (323)
T d1jvna1 123 LYFRSGADKVSIGTDAV 139 (323)
T ss_dssp HHHHHTCSEEEECHHHH
T ss_pred HHHHcCCCeEEechHHh
Confidence 99999999999999875
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.95 E-value=0.45 Score=37.41 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=79.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC---CeEEEeccccccCCCCCcccc-ccccCCCHHHHHHHhhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG---MLVEAELGRLSGTEDGLTVED-YEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g---v~VEaElG~i~g~e~~~~~~~-~~~~~T~peea~~Fv~~T 77 (192)
+++++|++.|.+..+.+ +|....+ +++..+| +.+--.+=.-++ ........ .+..-.+|.+..+.+++-
T Consensus 93 ~ll~~G~~kVii~s~~~---~~~~~~~---~~~~~~G~q~iv~slD~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (252)
T d1h5ya_ 93 TLFRAGADKVSVNTAAV---RNPQLVA---LLAREFGSQSTVVAIDAKWNGE-YYEVYVKGGREATGLDAVKWAKEVEEL 165 (252)
T ss_dssp HHHHHTCSEEEESHHHH---HCTHHHH---HHHHHHCGGGEEEEEEEEECSS-SEEEEETTTTEEEEEEHHHHHHHHHHH
T ss_pred hHhhcCCcEEEeccccc---CCcchHH---HHHHhcCCCcEEEEEEEEEcCC-cEEEEEeCCeEcCCCCHHHHHHHHHhc
Confidence 57889999999986533 2333333 4444444 333322211100 00000000 011224788888888888
Q ss_pred CCcEEEE-ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029540 78 DIDALAV-CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 78 gvD~LAv-aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|+.-+=+ +|-+ =|. ...+|++++++|.+.+ ++|++.=||-+.. ++++++.+.|+.=+=++|.+
T Consensus 166 g~~eii~tdI~~-dG~----~~G~d~~~~~~i~~~~---~~pii~~GGv~~~-~di~~l~~~g~~gv~~gs~l 229 (252)
T d1h5ya_ 166 GAGEILLTSIDR-DGT----GLGYDVELIRRVADSV---RIPVIASGGAGRV-EHFYEAAAAGADAVLAASLF 229 (252)
T ss_dssp TCSEEEEEETTT-TTT----CSCCCHHHHHHHHHHC---SSCEEEESCCCSH-HHHHHHHHTTCSEEEESHHH
T ss_pred CCCEEEEEeecc-cCc----cCCcCHHHHHHHHHhc---CCCEEEecCCCCH-HHHHHHHHCCCCEEEEhhHH
Confidence 8855433 3322 132 2346899999999887 6999999988854 55889999999888777766
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=91.72 E-value=1.8 Score=33.13 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEE---EecCcCCCCCCCCCC
Q 029540 22 DNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALA---VCIGNVHGKYPSSGP 98 (192)
Q Consensus 22 eNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA---vaiGt~HG~y~~~~p 98 (192)
++...+.+..+.++..|+.+-- . -..-|+++....++....+|.+= |--|-.. .
T Consensus 95 ~~~~~~~~~i~~i~~~g~~~Gi----a------------l~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~G-------Q 151 (221)
T d1tqxa_ 95 EDTERCIQLAKEIRDNNLWCGI----S------------IKPKTDVQKLVPILDTNLINTVLVMTVEPGFGG-------Q 151 (221)
T ss_dssp TCHHHHHHHHHHHHTTTCEEEE----E------------ECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSS-------C
T ss_pred cccchhhHHHHHHHhcCCeEEE----e------------eccccccccchhhcccccccEEEEEeecccccc-------c
Confidence 4555666777788877743311 1 12358888888888777788663 3333332 3
Q ss_pred CCC---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 99 NLK---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 99 ~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+++ +++++++++... ++.+-.=| |+..+.+..+.++|+.-+-.+|.+.
T Consensus 152 ~f~~~~l~KI~~lr~~~~--~~~I~VDG--GIn~~~i~~l~~aGad~iV~GS~if 202 (221)
T d1tqxa_ 152 SFMHDMMGKVSFLRKKYK--NLNIQVDG--GLNIETTEISASHGANIIVAGTSIF 202 (221)
T ss_dssp CCCGGGHHHHHHHHHHCT--TCEEEEES--SCCHHHHHHHHHHTCCEEEESHHHH
T ss_pred ccCcchhHHHHHHHHhcC--CcceEEEc--ccCHHhHHHHHHcCCCEEEEChHHH
Confidence 333 444555555432 57788888 7889999999999999999999875
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=91.43 E-value=0.5 Score=36.96 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=80.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccc-cccCCCHHHHHHHhhhhCCc
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY-EAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~-~~~~T~peea~~Fv~~TgvD 80 (192)
+.+++|++-|.+..+. -+|....+++++.--..-+.+--.+..-.. ........+ +..-.+|.+..+.+.+.|+.
T Consensus 91 ~ll~~Ga~kVii~s~~---~~n~~~i~~~~~~~G~q~iv~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 166 (251)
T d1ka9f_ 91 KLLLSGADKVSVNSAA---VRRPELIRELADHFGAQAVVLAIDARWRGD-FPEVHVAGGRVPTGLHAVEWAVKGVELGAG 166 (251)
T ss_dssp HHHHHTCSEEEECHHH---HHCTHHHHHHHHHHCGGGEEEEEEEEEETT-EEEEEETTTTEEEEEEHHHHHHHHHHHTCC
T ss_pred HHHHcCCCEEEECchh---hhCHHHHHHHHHhhcccccccccchhhccc-ceEEEeccceecCCccHHHHHHHHHhcCCC
Confidence 4578888888887543 334444444433332222333333221100 000000000 11124677877778888885
Q ss_pred EEEE-ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 81 ALAV-CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAv-aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-+=+ .|- .-|... .+|++++++|.+.+ ++|+...||-+..+ ++.++.+.|+.=+=+++.+.
T Consensus 167 eii~tdi~-~dG~~~----G~d~~l~~~i~~~~---~~pii~~GGv~~~~-dl~~l~~~g~~gviig~al~ 228 (251)
T d1ka9f_ 167 EILLTSMD-RDGTKE----GYDLRLTRMVAEAV---GVPVIASGGAGRME-HFLEAFQAGAEAALAASVFH 228 (251)
T ss_dssp EEEEEETT-TTTTCS----CCCHHHHHHHHHHC---SSCEEEESCCCSHH-HHHHHHHTTCSEEEESHHHH
T ss_pred EEEEEeec-ccCccC----CcchhHHHHHHhhc---ceeEEEecCCCCHH-HHHHHHHCCCCEEEEhHHHH
Confidence 5444 332 234433 35899999999887 69999999988655 58888899998888887663
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=90.57 E-value=1.2 Score=34.85 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=71.9
Q ss_pred hhhhcCCCEeEeeCCC-----CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH---HH
Q 029540 2 EAIVLGFDSLMVDGSH-----LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE---EF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~---~F 73 (192)
..++.|.+++.+=||. |+.+|-.+..+.+++.+.. .+.|=+=.|. ++.+++. +.
T Consensus 32 ~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~-----------------~s~~~~i~~a~~ 93 (292)
T d1xkya1 32 YLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-RVPVIAGTGS-----------------NNTHASIDLTKK 93 (292)
T ss_dssp HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEECCC-----------------SCHHHHHHHHHH
T ss_pred HHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCC-CceEEEecCc-----------------ccHHHHHHHHHH
Confidence 3578899999998877 8899999999999887643 3444332111 2223333 34
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHh
Q 029540 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIE 137 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~ 137 (192)
+++.|+|++-+.-=-. |+.....+ ++-.++|.+.+ ++|++++ .|..++.+.+.+..+
T Consensus 94 a~~~Gad~ilv~pP~~---~~~s~~~i-~~~~~~v~~~~---~~pi~iYn~P~~~~~~~~~~~~~~l~~ 155 (292)
T d1xkya1 94 ATEVGVDAVMLVAPYY---NKPSQEGM-YQHFKAIAEST---PLPVMLYNVPGRSIVQISVDTVVRLSE 155 (292)
T ss_dssp HHHTTCSEEEEECCCS---SCCCHHHH-HHHHHHHHHTC---SSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHcCCCEEEECCCCC---CCCCHHHH-HHHHHHHhccC---CCcEEEEeCCcccCCccCHHHHhhhcc
Confidence 6788999988863211 11111112 33445555555 7999997 678899999999765
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=90.45 E-value=0.13 Score=38.87 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+++|++..+-+.++++|.+++|.-.. .| ..+=.+++++|++.- ..++|++ =|| -+|++++....+.|+..
T Consensus 73 ~~~~~e~iv~aa~~~~advI~iSs~~~--~~----~~~~~~l~~~L~~~g-~~~v~Vi-vGG-~ip~~d~~~l~~~Gv~~ 143 (168)
T d7reqa2 73 LFQTPEETARQAVEADVHVVGVSSLAG--GH----LTLVPALRKELDKLG-RPDILIT-VGG-VIPEQDFDELRKDGAVE 143 (168)
T ss_dssp TTBCHHHHHHHHHHHTCSEEEEEECSS--CH----HHHHHHHHHHHHHTT-CTTSEEE-EEE-SCCGGGHHHHHHHTEEE
T ss_pred CcCcHHHHHHHHHccCCCEEEEecCcc--cc----hHHHHHHHHHHHhcC-CCCeEEE-EeC-CCCHHHHHHHHhCCCCE
Confidence 578999999999999999999994221 12 112223345555541 1246555 454 57899999999999987
Q ss_pred e
Q 029540 143 F 143 (192)
Q Consensus 143 I 143 (192)
|
T Consensus 144 i 144 (168)
T d7reqa2 144 I 144 (168)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.07 E-value=0.8 Score=35.34 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=59.6
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.|-||-+..+...+.|+|.|=+.= .-+.+. ...+++++++|.+.+ .+|+-+=||-- +.+++++.+..|+.|
T Consensus 29 ~~~dP~~~a~~~~~~ga~~l~i~D--Ld~~~~---~~~~~~~i~~i~~~~---~~pi~vGGGIr-s~~~~~~ll~~Ga~k 99 (239)
T d1vzwa1 29 SYGSPLEAALAWQRSGAEWLHLVD--LDAAFG---TGDNRALIAEVAQAM---DIKVELSGGIR-DDDTLAAALATGCTR 99 (239)
T ss_dssp BCCCHHHHHHHHHHTTCSEEEEEE--HHHHHT---SCCCHHHHHHHHHHC---SSEEEEESSCC-SHHHHHHHHHTTCSE
T ss_pred ecCCHHHHHHHHHHcCCCEEEEEe--eccccc---ccchHHHHHHHHhhc---CcceEeecccc-cchhhhhhhcccccc
Confidence 356898877777788999987761 122222 224789999999887 69999977654 567799999999999
Q ss_pred eecchHHH
Q 029540 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
|.++|...
T Consensus 100 Vvi~s~~~ 107 (239)
T d1vzwa1 100 VNLGTAAL 107 (239)
T ss_dssp EEECHHHH
T ss_pred chhhHHhh
Confidence 99999763
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=90.05 E-value=0.45 Score=37.24 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=58.9
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 63 KLTDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.+.||-+..++..+.|+|.|-+. +.-+-+ ....+++++++|.+.+ .+|+-+=||-- +.+++++.++.|+.
T Consensus 28 ~~gdP~~~a~~~~~~g~dei~iiDl~~~~~-----~~~~~~~~i~~i~~~~---~~pi~vgGGIr-s~e~~~~ll~~Ga~ 98 (251)
T d1ka9f_ 28 DAGDPVEAARAYDEAGADELVFLDISATHE-----ERAILLDVVARVAERV---FIPLTVGGGVR-SLEDARKLLLSGAD 98 (251)
T ss_dssp STTCHHHHHHHHHHHTCSCEEEEECCSSTT-----CHHHHHHHHHHHHTTC---CSCEEEESSCC-SHHHHHHHHHHTCS
T ss_pred ECCCHHHHHHHHHHcCCCEEEEEecccccc-----cchhHHHHHHHHHhcc---Ccchheecccc-CHHHHHHHHHcCCC
Confidence 45789998888889999887664 222211 1234778888888776 69999966544 45889999999999
Q ss_pred EeecchHHH
Q 029540 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
||.++|...
T Consensus 99 kVii~s~~~ 107 (251)
T d1ka9f_ 99 KVSVNSAAV 107 (251)
T ss_dssp EEEECHHHH
T ss_pred EEEECchhh
Confidence 999999653
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.86 E-value=3.1 Score=33.65 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=80.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
-+++++.. ..+.|+|.+-|| -||...-....-=.+.|.+|++.+.. ++|+..=||--.+-| +-||+.+|-.=+=
T Consensus 226 ~~~~da~~-a~~~G~d~i~vs---nhggr~~d~~~~~~~~l~~i~~~~~~-~~~iiadGGIR~G~D-v~KALALGA~~V~ 299 (349)
T d1tb3a1 226 LTKEDAEL-AMKHNVQGIVVS---NHGGRQLDEVSASIDALREVVAAVKG-KIEVYMDGGVRTGTD-VLKALALGARCIF 299 (349)
T ss_dssp CSHHHHHH-HHHTTCSEEEEC---CGGGTSSCSBCCHHHHHHHHHHHHTT-SSEEEEESSCCSHHH-HHHHHHTTCSCEE
T ss_pred hhhHHHHH-HHHhhccceeee---ccccccccccccchhhcceeeeccCC-CeeEEeccCcCcHHH-HHHHHHcCCCEEE
Confidence 35555555 447888888876 46554321222245778899888742 589999998776655 8999999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029540 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
++.++.++.... -.+-+....+.+++.++..|.++|+..
T Consensus 300 igrp~L~~la~~-------G~~gv~~~l~~l~~EL~~~M~l~G~~~ 338 (349)
T d1tb3a1 300 LGRPILWGLACK-------GEDGVKEVLDILTAELHRCMTLSGCQS 338 (349)
T ss_dssp ESHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCSB
T ss_pred EChHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998875321 123355667888899999999999753
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=89.51 E-value=2 Score=33.11 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh----
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---- 77 (192)
++++.||+.+=+--+..++++.|+..+.+-+..-. ++.+=.+ . ...+ ++++|.+|+++.
T Consensus 31 ~~~~~Gf~~~Kikvg~~~~~~di~~v~avr~~~G~-~~~l~vD--------------a-n~~~-~~~~A~~~~~~l~~~~ 93 (256)
T d2gdqa1 31 AQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGS-SITMILD--------------A-NQSY-DAAAAFKWERYFSEWT 93 (256)
T ss_dssp HHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCT-TSEEEEE--------------C-TTCC-CHHHHHTTHHHHTTCS
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCC-CeEEeec--------------c-ccCC-CHHHHHHHHHHHhhcC
Confidence 35678999999998888999999888877655521 1211111 0 1123 789999988764
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029540 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
+++++== + -+.-|++-+++|++.+ ++|+. -|-+=.+.++++++++.| +.-+|++
T Consensus 94 ~i~~~Ee----------P-~~~~d~~~~~~l~~~~---~ipIa-~gE~~~~~~~~~~~i~~~a~di~~~d 148 (256)
T d2gdqa1 94 NIGWLEE----------P-LPFDQPQDYAMLRSRL---SVPVA-GGENMKGPAQYVPLLSQRCLDIIQPD 148 (256)
T ss_dssp CEEEEEC----------C-SCSSCHHHHHHHHTTC---SSCEE-ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ceeEecc----------c-cccchHHHHHHHhhcc---cceee-cCccccchhhHHHHHHhhcceeeecc
Confidence 2333321 1 2345888899999877 69976 577778889999999877 5556664
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.39 E-value=0.7 Score=38.77 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=65.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
-.+++.|+..+ ++|+|.+-|.+|.-.+.... +.| ++..+.++.+..+..++|++=-||-..+-+ +.+|+.+
T Consensus 168 VaT~e~a~~L~-~aGAD~VkVGiG~Gs~ctTr~~tGvG~p--q~sai~~~~~~a~~~~vpIIADGGi~~~gd-iakAla~ 243 (378)
T d1jr1a1 168 VVTAAQAKNLI-DAGVDALRVGMGCGSICITQEVLACGRP--QATAVYKVSEYARRFGVPVIADGGIQNVGH-IAKALAL 243 (378)
T ss_dssp ECSHHHHHHHH-HHTCSEEEECSSCSTTBCHHHHHCCCCC--HHHHHHHHHHHHGGGTCCEEEESCCCSHHH-HHHHHHT
T ss_pred cccHHHHHHHH-HhCCCEEeeccccccccccccccccCcc--cchhhhHHHHhhcccCCceecccccccCCc-eeeEEEe
Confidence 47888887754 79999999999987765421 124 466666666666666899999999988876 9999999
Q ss_pred CCeEeecchHHH
Q 029540 139 GVRKFNVNTEVR 150 (192)
Q Consensus 139 Gi~KINi~T~l~ 150 (192)
|-.=|.++|.|.
T Consensus 244 GAd~VMmGs~fA 255 (378)
T d1jr1a1 244 GASTVMMGSLLA 255 (378)
T ss_dssp TCSEEEESTTTT
T ss_pred ecceeeecceee
Confidence 999999999884
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=89.31 E-value=1.8 Score=32.66 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=76.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh---C
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---D 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---g 78 (192)
++++.||+.+=+--...++++.++..+++.+..-. ++.+=.+ . ...+ ++++|.+|+++. +
T Consensus 25 ~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~-~~~i~vD--------------~-N~~~-~~~~a~~~~~~le~~~ 87 (234)
T d1jpma1 25 NYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGS-AVKLRLD--------------A-NQGW-RPKEAVTAIRKMEDAG 87 (234)
T ss_dssp HHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGG-GSEEEEE--------------C-TTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCc-hhhhhhh--------------c-cccc-chHHHHHHHHHHHhcc
Confidence 57788999998887777888888887777665422 2211111 0 1123 688999998753 3
Q ss_pred Cc--EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 79 ID--ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 79 vD--~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.+ ++-= + -+.-|++-+++|++.+ ++|+++.. +=.+..++++.++.| +.=+|+..-.
T Consensus 88 ~~i~~~Ee----------P-~~~~d~~~~~~l~~~~---~~pia~gE-~~~~~~~~~~~i~~~~~d~v~~d~~~ 146 (234)
T d1jpma1 88 LGIELVEQ----------P-VHKDDLAGLKKVTDAT---DTPIMADE-SVFTPRQAFEVLQTRSADLINIKLMK 146 (234)
T ss_dssp CCEEEEEC----------C-SCTTCHHHHHHHHHHC---SSCEEEST-TCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CceeeecC----------C-ccccCHHHHHHhhccc---cceeeccc-ccccchhhhhhhccCCcCeEEEeeec
Confidence 33 3321 1 1334889999999888 69998854 556677788899887 5567776544
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=88.85 E-value=3.4 Score=31.83 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=69.1
Q ss_pred hcCCCEeEe-------eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH----HHHH
Q 029540 5 VLGFDSLMV-------DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ----AEEF 73 (192)
Q Consensus 5 ~~GFtSVM~-------D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee----a~~F 73 (192)
++||+.|=+ ||+ .|....++++++|++.|+.|=..|.+-.+-.+..........-.+.++ ...|
T Consensus 38 ~~G~n~VRi~vW~~p~~g~-----~~~~~~~~~v~~a~~~gl~vil~~h~~~~wa~~~~~~~p~~~~~~~~~~~~~~~~~ 112 (332)
T d1hjsa_ 38 ANGVNTVRQRVWVNPADGN-----YNLDYNIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNY 112 (332)
T ss_dssp HTTCCEEEEEECSSCTTCT-----TSHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHH
T ss_pred HcCCCEEEeeeeecCCCCc-----cCHHHHHHHHHHHHHCCCEEEEEecCCccccCccccCCCcccccchhHHHHHHHHH
Confidence 679999876 443 368889999999999999998888765432111100000001112222 2222
Q ss_pred h-------hhhCCcEEEEecCcCC--CCCCCCCCCCCHHHHH--------HHHhhhccCCccEEeecCCCCCHHHH
Q 029540 74 I-------DETDIDALAVCIGNVH--GKYPSSGPNLKLDLLK--------DLHALSSKKGVLLVLHGASGLSAELI 132 (192)
Q Consensus 74 v-------~~TgvD~LAvaiGt~H--G~y~~~~p~ld~~~L~--------~I~~~~~~~~iPLVlHGgSG~~~e~~ 132 (192)
. +..|+....+.|||.+ |.+-+..-.-+.+.+. .|++......+.+.+|+.++-+....
T Consensus 113 ~~~v~~~~k~~~~~~~~~~i~nE~n~g~~w~~~~~~~~~~~~~l~~~a~~av~~~~~~~~~~v~~~~~~~~~~~~~ 188 (332)
T d1hjsa_ 113 TLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWGTQ 188 (332)
T ss_dssp HHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHH
T ss_pred HHHHHHHHHhcCCchhHhhhccccCCcccCccCCcchHHHHHHHHHHHHHHHHhhccCCCcceeecccCcCchhhh
Confidence 2 3458888899999987 3331111112333332 23322111246688899998776543
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=88.77 E-value=0.92 Score=36.83 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=79.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CC---CeEEE---ecccc--ccCCCCC-ccccc----cccCC
Q 029540 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KG---MLVEA---ELGRL--SGTEDGL-TVEDY----EAKLT 65 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~g---v~VEa---ElG~i--~g~e~~~-~~~~~----~~~~T 65 (192)
++++|+|+..||| |.=+|.+..+++|+.|+- .| +.-.. -+..- .+..+.. ...+. -.+.-
T Consensus 110 ~~~LD~Ga~GIiv-----P~V~s~eea~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~~~~~~~~y~~~~n~~~~vi~qIE 184 (299)
T d1izca_ 110 STALDAGAAGIVI-----PHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIE 184 (299)
T ss_dssp HHHHHHTCSEEEE-----TTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEEC
T ss_pred HHHHHhCcCeeec-----cccccHHHHHHHHHhhhhccCCCccccccccccccccccccccchhHHhhhcccceeeeecC
Confidence 3789999999997 999999999999999982 11 11000 00000 0000000 00000 01223
Q ss_pred CH---HHHHHHhhhhCCcEEEEecC---cCCCCCCCC-CCC-CCHH---HHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029540 66 DV---NQAEEFIDETDIDALAVCIG---NVHGKYPSS-GPN-LKLD---LLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 66 ~p---eea~~Fv~~TgvD~LAvaiG---t~HG~y~~~-~p~-ld~~---~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
++ +.+.+.++--|||++-+.-+ ...|..... -.+ -+.+ .+++|.+.+++.++|+..|..+ .+++++
T Consensus 185 t~~av~nldeI~av~GVD~ifiGp~DLs~slG~~~~~~~g~~~~p~v~~ai~~i~~a~k~~Gk~~g~~~~~---~~~~~~ 261 (299)
T d1izca_ 185 SVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIFGGALS---VDMVPS 261 (299)
T ss_dssp SHHHHHTHHHHHTCTTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTTCCEEEECSS---GGGHHH
T ss_pred CHHHHHHHHHHhccccccEEEEcchHHHhhcCCCcccccccccHHHHHHHHHHHHHHHHHcCCcEEeccCC---HHHHHH
Confidence 33 33445555569997654321 123321100 011 1233 3445555565568999887654 477999
Q ss_pred HHhcCCeEeecchHHH
Q 029540 135 CIERGVRKFNVNTEVR 150 (192)
Q Consensus 135 ~i~~Gi~KINi~T~l~ 150 (192)
.++.|++=|-+++|..
T Consensus 262 ~~~~G~~~i~~g~D~~ 277 (299)
T d1izca_ 262 LIEQGYRAIAVQFDVW 277 (299)
T ss_dssp HHHTTEEEEEEEEHHH
T ss_pred HHHcCCCEEEEhHHHH
Confidence 9999999999999874
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=88.63 E-value=0.84 Score=32.38 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=49.0
Q ss_pred CCCHHHHHHHhhhh-------CCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 64 LTDVNQAEEFIDET-------DIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 64 ~T~peea~~Fv~~T-------gvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
.+|.++|.+++++. ..|++-.-+ ..|..| ++++++|++.-.-..+|+++--+++.+ ++..+|
T Consensus 35 a~~g~~Al~~l~~~~~~~~~~~pdlIllD~---------~mP~~~G~el~~~ir~~~~~~~iPvi~lT~~~~~-~~~~~a 104 (144)
T d1i3ca_ 35 LRDGLAAMAFLQQQGEYENSPRPNLILLDL---------NLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNE-DDVIAS 104 (144)
T ss_dssp ECSHHHHHHHHTTCGGGTTCCCCSEEEECS---------CCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCH-HHHHHH
T ss_pred ECCHHHHHHHHHhchhhhccCCCCEEEEEC---------ccccccchHHHHHHHhCcccCCCeEEEEECCCCH-HHHHHH
Confidence 57789999999764 367666553 246666 999999997543236999998776544 568899
Q ss_pred HhcCCe
Q 029540 136 IERGVR 141 (192)
Q Consensus 136 i~~Gi~ 141 (192)
.+.|+.
T Consensus 105 ~~~Ga~ 110 (144)
T d1i3ca_ 105 YELHVN 110 (144)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 999964
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=88.60 E-value=0.88 Score=35.18 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029540 65 TDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||-+..+...+.|+|.|-+. +..+.+ ....+++.++.+++.. +||.+=||- -+.+++++.++.|..||
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~-----~~~~~~~~~~~~~~~~----~pl~~gGGI-~s~~~~~~~~~~Ga~kV 99 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIE-----NSGENLPVLEKLSEFA----EHIQIGGGI-RSLDYAEKLRKLGYRRQ 99 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHH-----CCCTTHHHHHHGGGGG----GGEEEESSC-CSHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccc-----cCCcchhheehhcccc----cchhhhhhh-hhhhhhhhccccccceE
Confidence 789765555556799998654 322221 1334666666665543 899885543 57789999999999999
Q ss_pred ecchHHH
Q 029540 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|.+.
T Consensus 100 vi~s~~~ 106 (241)
T d1qo2a_ 100 IVSSKVL 106 (241)
T ss_dssp EECHHHH
T ss_pred ecCcccc
Confidence 9999764
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=88.18 E-value=4.6 Score=31.26 Aligned_cols=124 Identities=19% Similarity=0.123 Sum_probs=81.0
Q ss_pred hhhhcCCCEeE---eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH---HHHHHhh
Q 029540 2 EAIVLGFDSLM---VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN---QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM---~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe---ea~~Fv~ 75 (192)
+|+++|-+-|+ |=+|.. -+++++...++++-||++|+++=.|.=--++... .-++|+ .+.+-..
T Consensus 98 ~a~rlGadaV~~~v~~g~~~-e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~---------~~~~~~~v~~aaria~ 167 (251)
T d1ojxa_ 98 EAVSLGASAVGYTIYPGSGF-EWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVV---------NETAPEIVAYAARIAL 167 (251)
T ss_dssp HHHHTTCSEEEEEECTTSTT-HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCC---------CTTCHHHHHHHHHHHH
T ss_pred HHHhchhceEEEEEeCCCCc-hHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccc---------cCCCHHHHHHHHHHHH
Confidence 57888877664 334433 5779999999999999999998888633222111 124444 3334445
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC-CCHHHH----HHHHhcCCeEeecchHH
Q 029540 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-LSAELI----KGCIERGVRKFNVNTEV 149 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG-~~~e~~----~~~i~~Gi~KINi~T~l 149 (192)
+.|+|.+=+- |+. +++-..++.+... .+|+++=||+. .+++++ +.+++.|.+=+-++-.+
T Consensus 168 ElGaDivK~~-------~p~-----~~~~~~~~v~~a~--~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni 232 (251)
T d1ojxa_ 168 ELGADAMKIK-------YTG-----DPKTFSWAVKVAG--KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNV 232 (251)
T ss_dssp HHTCSEEEEC-------CCS-----SHHHHHHHHHHTT--TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred HhCCCEEEec-------CCC-----cHHHHHHHHHhcC--CCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhh
Confidence 7899998873 543 4555554443321 58988888875 466654 44778899888887665
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=87.98 E-value=0.97 Score=35.96 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=77.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
+.++|.+.|-|=.-.-+-+=|+..++++++.|+.+.++.=- .=+...||.++.+-+.+.|+|-+
T Consensus 81 ~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~~l~vTFHR----------------AfD~~~d~~~al~~Li~lG~~rI 144 (247)
T d1twda_ 81 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHR----------------AFDMCANPLYTLNNLAELGIARV 144 (247)
T ss_dssp HHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECG----------------GGGGCSCHHHHHHHHHHHTCCEE
T ss_pred HHHcCCCeEEEEEECCCCCccHHHHHHHHHHhcccCeeeeh----------------hhhhhCCHHHHHHHHHhcCCCeE
Confidence 44566666666555545555666777777777643222100 01235799999999999999987
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029540 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
-=| |.-+ ...-..++|+++.+.. +-+++ =-|+|+..+.++..++.|+.-+..+
T Consensus 145 LTS-----Gg~~--~a~~G~~~L~~L~~~a---~~~iI-m~GgGI~~~Ni~~l~~~g~~e~H~s 197 (247)
T d1twda_ 145 LTS-----GQKS--DALQGLSKIMELIAHR---DAPII-MAGAGVRAENLHHFLDAGVLEVHSS 197 (247)
T ss_dssp EEC-----TTSS--STTTTHHHHHHHHTSS---SCCEE-EEESSCCTTTHHHHHHHTCSEEEEC
T ss_pred ecc-----CCCC--chhHHHHHHHHHHHhc---CCcEE-EecCCCCHHHHHHHHHcCCCEEEEC
Confidence 644 3332 2445678888887654 34454 4556899999999999999998864
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=87.94 E-value=0.3 Score=35.27 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=50.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC----CHHHHHHHHhcC
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL----SAELIKGCIERG 139 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~----~~e~~~~~i~~G 139 (192)
.+.|++..+.+.+++.|++++|+=+.|....- .+.++.+++.- ..++|++.=|+-.+ +++..++.-++|
T Consensus 40 ~~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~------~~~~~~l~~~~-~~~i~iivGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T d1ccwa_ 40 LSPQELFIKAAIETKADAILVSSLYGQGEIDC------KGLRQKCDEAG-LEGILLYVGGNIVVGKQHWPDVEKRFKDMG 112 (137)
T ss_dssp EECHHHHHHHHHHHTCSEEEEEECSSTHHHHH------TTHHHHHHHTT-CTTCEEEEEESCSSSSCCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHhcCCCEEEEeeccccchHHH------HHHHHHHHHhc-cCCCEEEEeCCcCCCccccHHHHHHHHHcC
Confidence 48899999999999999999998666543211 12345565542 12688776664433 456667777889
Q ss_pred CeEe
Q 029540 140 VRKF 143 (192)
Q Consensus 140 i~KI 143 (192)
+.+|
T Consensus 113 v~~i 116 (137)
T d1ccwa_ 113 YDRV 116 (137)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9886
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.03 E-value=2.9 Score=28.48 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCC-CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNL-KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l-d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
..++++|.+.+++...|++=+-+. .|.. -++++++|++... .+|+++--+.+-++ ...+|.+.|+.
T Consensus 33 a~~~~~a~~~l~~~~~dlii~D~~---------mp~~~G~el~~~l~~~~~--~~piI~~t~~~~~~-~~~~a~~~Ga~ 99 (123)
T d1krwa_ 33 FENGNEVLAALASKTPDVLLSDIR---------MPGMDGLALLKQIKQRHP--MLPVIIMTAHSDLD-AAVSAYQQGAF 99 (123)
T ss_dssp ESSSHHHHHHHTTCCCSEEEECCS---------SSSSTTHHHHHHHHHHSS--SCCEEESCCCSCHH-HHHHHHHHTEE
T ss_pred eCCHHHHHHHHHhCCCCEEEehhh---------cCCchHHHHHHHHHHhCC--CCeEEEEecCCCHH-HHHHHHHcCCC
Confidence 356689999999999999877642 2333 3888999988653 69999988877554 56788888864
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=86.99 E-value=1.3 Score=30.66 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.+++++|.+++++...|++=.-+. -|..| +++++.|++.....++|+++.=+. ...+...++.+.|+.
T Consensus 37 a~~~~~al~~l~~~~~dlii~D~~---------mP~~~G~el~~~lr~~~~~~~~pii~lt~~-~~~~~~~~a~~~G~~ 105 (129)
T d1p6qa_ 37 AGDGEQGMKIMAQNPHHLVISDFN---------MPKMDGLGLLQAVRANPATKKAAFIILTAQ-GDRALVQKAAALGAN 105 (129)
T ss_dssp CSSHHHHHHHHHTSCCSEEEECSS---------SCSSCHHHHHHHHTTCTTSTTCEEEECCSC-CCHHHHHHHHHHTCS
T ss_pred ECCHHHHHHHHHhCCCCeEEeeee---------cCCCChHHHHHHHHhCcccCCCeEEEEEec-CCHHHHHHHHHCCCC
Confidence 478899999999999997666531 23333 688888887433336998887443 466778889999965
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=86.96 E-value=2.2 Score=29.20 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=49.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.++++|.+++++...|++=+-+. -|..| ++++++|++... ++|.++--|.+ ..+...+|++.|+.
T Consensus 34 ~~~~~al~~~~~~~~dlvi~D~~---------mp~~~G~e~~~~lr~~~~--~~~iI~lt~~~-~~~~~~~a~~~Ga~ 99 (123)
T d1dbwa_ 34 QSAEAFLAFAPDVRNGVLVTDLR---------MPDMSGVELLRNLGDLKI--NIPSIVITGHG-DVPMAVEAMKAGAV 99 (123)
T ss_dssp SCHHHHHHHGGGCCSEEEEEECC---------STTSCHHHHHHHHHHTTC--CCCEEEEECTT-CHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHhhcCCcEEEEecc---------CccccchHHHHHHHhcCC--CCeEEEEEeeC-CHHHHHHHHHCCCC
Confidence 56789999999999998777641 23333 788999988653 68988888777 45667788898854
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=86.62 E-value=3.8 Score=32.04 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=76.7
Q ss_pred hhhhcCCCEeEeeCCC-------------------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccc
Q 029540 2 EAIVLGFDSLMVDGSH-------------------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA 62 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-------------------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~ 62 (192)
++++.||+.+=++-.. ....++++...+.++..+.. +| . +-....+. ..
T Consensus 36 ~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~-------vG---~-~~~l~vDa-n~ 103 (278)
T d2gl5a1 36 AALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREA-------MG---D-DADIIVEI-HS 103 (278)
T ss_dssp HHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHH-------HC---S-SSEEEEEC-TT
T ss_pred HHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHH-------hc---c-ccceeecc-cc
Confidence 5788999999886433 23466777777777777651 11 0 00011111 11
Q ss_pred cCCCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 63 KLTDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 63 ~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
.+ ++++|.+|+++ .++.++== + -|.-|++-+++|++.+ ++|+.. |-+-...++++.+++.|
T Consensus 104 ~~-~~~~Ai~~~~~L~~~~l~wiEe----------P-i~~~d~~~~~~L~~~~---~ipIa~-gE~~~~~~~~~~~i~~~ 167 (278)
T d2gl5a1 104 LL-GTNSAIQFAKAIEKYRIFLYEE----------P-IHPLNSDNMQKVSRST---TIPIAT-GERSYTRWGYRELLEKQ 167 (278)
T ss_dssp CS-CHHHHHHHHHHHGGGCEEEEEC----------S-SCSSCHHHHHHHHHHC---SSCEEE-CTTCCTTHHHHHHHHTT
T ss_pred cc-cchhhHHHHHHhcccccceecc----------c-ccccchhhhhhhcccc---ccceec-ccccCChHHHhhhhccc
Confidence 34 68899998765 45554431 1 2345999999999988 699977 77888888899999877
Q ss_pred -CeEeecchH
Q 029540 140 -VRKFNVNTE 148 (192)
Q Consensus 140 -i~KINi~T~ 148 (192)
+.=+|++.-
T Consensus 168 a~di~~~d~~ 177 (278)
T d2gl5a1 168 SIAVAQPDLC 177 (278)
T ss_dssp CCSEECCCTT
T ss_pred cceeEeeccc
Confidence 455666543
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=86.57 E-value=2.9 Score=32.49 Aligned_cols=128 Identities=14% Similarity=0.183 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCC
Q 029540 23 NISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPN 99 (192)
Q Consensus 23 Ni~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ 99 (192)
+++......++++..|..+++-+....+ ...+|+...++++ +.|+|.+.++ -.=|.- .|.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~G~~~i~l~--DT~G~~---~P~ 190 (303)
T d1rqba2 128 DPRNMAHAMAAVKKAGKHAQGTICYTIS------------PVHTVEGYVKLAGQLLDMGADSIALK--DMAALL---KPQ 190 (303)
T ss_dssp CTHHHHHHHHHHHHTTCEEEEEEECCCS------------TTCCHHHHHHHHHHHHHTTCSEEEEE--ETTCCC---CHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEecCC------------CCCCHHHHHHHHHHHHhcCCcEEeec--Cccchh---hhH
Confidence 3455567788889999888876554311 2246777666654 4689987765 222432 243
Q ss_pred CCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEe------------ecchHHHHHHHHHhc-CCCCCh
Q 029540 100 LKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKF------------NVNTEVRKAYMDSLS-RPKSDL 164 (192)
Q Consensus 100 ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KI------------Ni~T~l~~a~~~~~~-~~~~~~ 164 (192)
-=.++++.+++... .++||-+| =..|+.-...-.|++.|+..| |..|+-...+.+.+. +++.|+
T Consensus 191 ~v~~li~~l~~~~~-~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~id~ti~GlG~~~GN~~te~lv~~L~~~g~~t~idl 269 (303)
T d1rqba2 191 PAYDIIKAIKDTYG-QKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDY 269 (303)
T ss_dssp HHHHHHHHHHHHHC-TTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBHHHHHHHTTTSSEECCCCH
T ss_pred HHHHHHHHHHhhcC-CcccceeccCchHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCccHHHHHHHHHhcCCCCCCCH
Confidence 23455667766652 25888777 678888999999999999987 566776655554332 234566
Q ss_pred HHHH
Q 029540 165 IHLM 168 (192)
Q Consensus 165 ~~~~ 168 (192)
..+.
T Consensus 270 ~~L~ 273 (303)
T d1rqba2 270 DRLH 273 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=85.67 E-value=1.7 Score=36.34 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=84.9
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
.+++|.+-+-||.+|---+.-+...+.+.+. --++.| |.| .-++++.|+..+ ++|+|.+
T Consensus 159 L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~--~~~v~v------IaG------------NV~T~e~a~~L~-~~GaD~V 217 (388)
T d1eepa_ 159 LVKAHVDILVIDSAHGHSTRIIELIKKIKTK--YPNLDL------IAG------------NIVTKEAALDLI-SVGADCL 217 (388)
T ss_dssp HHHTTCSEEEECCSCCSSHHHHHHHHHHHHH--CTTCEE------EEE------------EECSHHHHHHHH-TTTCSEE
T ss_pred HHhhccceeeeeccccchHHHHHHHHHHHHH--CCCCce------eec------------cccCHHHHHHHH-hcCCCee
Confidence 4678999999998886544433333333221 124544 322 247888888866 7899999
Q ss_pred EEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 83 AVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 83 AvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
=|.||.-...... +.|+ +.-+.+..+.....++|++-.||-..|-| +.||+.+|-.=|-+++.|.
T Consensus 218 kVGiGpGs~CtTr~~~GvG~pq--~sai~~~~~~~~~~~vpiIADGGi~~~Gd-i~KAla~GAd~VMlG~~lA 287 (388)
T d1eepa_ 218 KVGIGPGSICTTRIVAGVGVPQ--ITAICDVYEACNNTNICIIADGGIRFSGD-VVKAIAAGADSVMIGNLFA 287 (388)
T ss_dssp EECSSCSTTSHHHHHHCCCCCH--HHHHHHHHHHHTTSSCEEEEESCCCSHHH-HHHHHHHTCSEEEECHHHH
T ss_pred eeccccccccccccccccCcch--HHHHHHHHHHhccCCceEEeccccCcCCc-eeeeEEeccceeecchhhh
Confidence 9999875444321 1343 44455555555556799999999998876 9999999999999999884
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.49 E-value=2.7 Score=28.53 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=50.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..++++|.+.+++...|++=+-+. -|..| ++.+++|++... .+|+++=-+.+. .++..++.+.|+.-
T Consensus 30 a~~g~eal~~l~~~~~dliilD~~---------mP~~~G~e~~~~i~~~~~--~~pvi~lt~~~~-~~~~~~a~~~Ga~~ 97 (119)
T d2pl1a1 30 AEDAKEADYYLNEHIPDIAIVDLG---------LPDEDGLSLIRRWRSNDV--SLPILVLTARES-WQDKVEVLSAGADD 97 (119)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSC---------CSSSCHHHHHHHHHHTTC--CSCEEEEESCCC-HHHHHHHHHTTCSE
T ss_pred ECCHHHHHHHHHhcccceeehhcc---------CCCchhHHHHHHHHhcCc--ccceEeeeccCC-HHHHHHHHHcCCCE
Confidence 467899999999999998877641 35555 889999988653 688887777664 45577888998754
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.99 E-value=2.6 Score=34.97 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=82.6
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029540 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
.+++|-+-+-||.++---+.-+...+++-+. +. ++.| |.| .-.+++.|+..+ ++|+|.+
T Consensus 115 l~~agvd~ivID~A~G~s~~~~~~i~~ik~~-~~-~~~i------IaG------------NV~T~e~a~~L~-~aGaD~V 173 (365)
T d1zfja1 115 LFEAGADAIVIDTAHGHSAGVLRKIAEIRAH-FP-NRTL------IAG------------NIATAEGARALY-DAGVDVV 173 (365)
T ss_dssp HHHHTCSEEEECCSCTTCHHHHHHHHHHHHH-CS-SSCE------EEE------------EECSHHHHHHHH-HTTCSEE
T ss_pred HHHcCCCEEEEECCcccccchhHHHHHHHhh-CC-Ccce------eec------------ccccHHHHHHHH-hcCCceE
Confidence 4577888888888776655555555555322 21 2222 211 246787887755 8999999
Q ss_pred EEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 83 AVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 83 AvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-|.||.=-+.... +.| .+..+.+.++..+..++|++--||-..+-| +-||+.+|-.=|.+++.|.
T Consensus 174 kVGiG~Gs~CTTr~~tGvGvP--q~sai~~~~~~~~~~~~~iIADGGi~~~GD-i~KAla~GAd~VMlG~~lA 243 (365)
T d1zfja1 174 KVGIGPGSICTTRVVAGVGVP--QVTAIYDAAAVAREYGKTIIADGGIKYSGD-IVKALAAGGNAVMLGSMFA 243 (365)
T ss_dssp EECSSCCTTBCHHHHTCCCCC--HHHHHHHHHHHHHHTTCEEEEESCCCSHHH-HHHHHHTTCSEEEESTTTT
T ss_pred EeeecccccccCcceeeeecc--chhHHHHHHHHHHhCCceEEecCCcCcchh-hhhhhhccCCEEEecchhc
Confidence 9999754433321 124 334444555545455799999999987766 9999999999999998873
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=84.65 E-value=6.6 Score=29.68 Aligned_cols=114 Identities=8% Similarity=0.078 Sum_probs=75.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh---C
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---D 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---g 78 (192)
++++.||+.+=|---..++++.++..+++-+.... ++.+=.+ . ...| ++++|.+|+++. +
T Consensus 30 ~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~-~~~l~vD------a---------n~~~-~~~~Ai~~~~~l~~~~ 92 (247)
T d1tzza1 30 GYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGK-DAQLAVD------A---------NGRF-NLETGIAYAKMLRDYP 92 (247)
T ss_dssp HHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTT-TCEEEEE------C---------TTCC-CHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccC-CceEEec------c---------cccc-cchhHHHHHhhcchhh
Confidence 46788999999986667888888877776554432 2211111 0 1134 688999998765 4
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe-----Eeecch
Q 029540 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR-----KFNVNT 147 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~-----KINi~T 147 (192)
+.++= .+ -+.-|++-+++|++.+ ++|+.+ |-|=.+.++++..++.|.. =+|++.
T Consensus 93 i~wiE---------eP--~~~~d~~~~~~l~~~~---~ipia~-gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~ 151 (247)
T d1tzza1 93 LFWYE---------EV--GDPLDYALQAALAEFY---PGPMAT-GENLFSHQDARNLLRYGGMRPDRDWLQFDC 151 (247)
T ss_dssp CSEEE---------CC--SCTTCHHHHHHHTTTC---CSCEEE-CTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred hhhhc---------cc--cccccchhhhhhhhcc---cccccc-chhhhhhHHHHHHHHccCCcCcceeEeecc
Confidence 44443 11 2335788888888877 699886 4456688899999998853 466543
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.36 E-value=2.8 Score=29.01 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=50.3
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.++.++|.+.+++...|.+=+-+. .|..| ++++++|++... .+|+++=-+++ .++...+|++.|+.
T Consensus 34 a~~~~~al~~~~~~~~DlvllD~~---------mP~~~G~el~~~ir~~~~--~~~vivlt~~~-~~~~~~~a~~~Ga~ 100 (138)
T d1a04a2 34 ASNGEQGIELAESLDPDLILLDLN---------MPGMNGLETLDKLREKSL--SGRIVVFSVSN-HEEDVVTALKRGAD 100 (138)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEETT---------STTSCHHHHHHHHHHSCC--CSEEEEEECCC-CHHHHHHHHHTTCS
T ss_pred ECCHHHHHHHHHhcCCCEEEEecC---------CCCCCHHHHHHHHHhhCC--CCCEEEEEEEC-CHHHHHHHHHcCCC
Confidence 578899999999999999888751 34445 899999998653 57766655555 45678899999974
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.81 E-value=3.7 Score=33.65 Aligned_cols=132 Identities=12% Similarity=0.068 Sum_probs=80.7
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhCCCeEEEe-cc-ccccCCCCCccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSKGMLVEAE-LG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~gv~VEaE-lG-~i~g~e~~~~~~ 58 (192)
++|.++||+.|-+-+.|= ++|.=.+...||++-.++. +. .+ ++ .+...++..
T Consensus 170 ~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~-vg--~~~v~~r~~~~~~~~--- 243 (374)
T d1gwja_ 170 QRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEV-FG--PERVGIRLTPFLELF--- 243 (374)
T ss_dssp HHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHH-HC--GGGEEEEECTTCCCT---
T ss_pred HHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHH-cC--Ccceeeeeeeecccc---
Confidence 378999999999999883 5788888899998888753 11 00 11 011111100
Q ss_pred cccccCCCHHH-H---HHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029540 59 DYEAKLTDVNQ-A---EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 59 ~~~~~~T~pee-a---~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
......++. + ..-++..+||++-++-+...+.- ........+.|++.+ ++|++.-|+ +..++..+
T Consensus 244 --g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~---~~pvi~~G~--i~~~~ae~ 312 (374)
T d1gwja_ 244 --GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD----ITYPEGFREQMRQRF---KGGLIYCGN--YDAGRAQA 312 (374)
T ss_dssp --TCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC----CCCCTTHHHHHHHHC---CSEEEEESS--CCHHHHHH
T ss_pred --CCcccchHHHHHHhhccccccCceEEEeccCcccCCC----cchhHHHHHHHHHHc---CCCEEEECC--cCHHHHHH
Confidence 001122222 2 22256679999988876554321 112223457788888 699998886 46778888
Q ss_pred HHhcC-CeEeecchHH
Q 029540 135 CIERG-VRKFNVNTEV 149 (192)
Q Consensus 135 ~i~~G-i~KINi~T~l 149 (192)
+++.| +-=|-++..+
T Consensus 313 ~l~~g~aDlV~~gR~~ 328 (374)
T d1gwja_ 313 RLDDNTADAVAFGRPF 328 (374)
T ss_dssp HHHTTSCSEEEESHHH
T ss_pred HHHcCCCcEehhhHHH
Confidence 89888 4467666554
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=83.76 E-value=1.6 Score=35.87 Aligned_cols=137 Identities=19% Similarity=0.167 Sum_probs=80.5
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCcccc
Q 029540 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~ 59 (192)
++|.++||+.|-+=+.|- ++|.-.+...||++-.++ .|-. -=++.+-...+...
T Consensus 166 ~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~--~~~~~~~~~~d~~~--- 240 (380)
T d1q45a_ 166 LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGAS--KVGVRVSPAIDHLD--- 240 (380)
T ss_dssp HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG--GEEEEECTTCCGGG---
T ss_pred HHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHcccc--CceEEEeecccccc---
Confidence 368999999999987554 688889999999998876 2211 01111111111111
Q ss_pred ccccCCCHH-------H---HHHHhhhhCCcEEEEecCcCCCCCCCC-----CCCCCHHHHHHHHhhhccCCccEEeecC
Q 029540 60 YEAKLTDVN-------Q---AEEFIDETDIDALAVCIGNVHGKYPSS-----GPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 60 ~~~~~T~pe-------e---a~~Fv~~TgvD~LAvaiGt~HG~y~~~-----~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
...+.+. + ....+...++|.+.++.|..++..... ......+..+.++..+ ++|++.=|+
T Consensus 241 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pv~~~Gg 315 (380)
T d1q45a_ 241 --ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAY---NGTFMSSGG 315 (380)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHS---CSCEEEESS
T ss_pred --cccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhcc---CCcEEeCCC
Confidence 0111111 1 112234468999999999887654321 1122344567788777 689888775
Q ss_pred CCCCHHHHHHHHhcC-CeEeecchHH
Q 029540 125 SGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 125 SG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
+..++-.++++.| +-=|-++-.+
T Consensus 316 --~~~~~ae~~l~~G~~DlV~~gR~l 339 (380)
T d1q45a_ 316 --FNKELGMQAVQQGDADLVSYGRLF 339 (380)
T ss_dssp --CCHHHHHHHHHTTSCSEEEESHHH
T ss_pred --CCHHHHHHHHHcCCccchhhhHHH
Confidence 6788888999998 5577777665
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.62 E-value=4.7 Score=31.78 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=71.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH----HHHHhhhh
Q 029540 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ----AEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee----a~~Fv~~T 77 (192)
.|-++||+.|=|---..++.+.-+ +++++.|...|..|=.|+|.=.+. ...-.+|++ +++|+ +-
T Consensus 93 ~~~~lGf~~iEiSdg~~~i~~~~~--~~~I~~~~~~G~~V~~EvG~K~~~---------~~~~~~~~~~i~~~~~~L-ea 160 (251)
T d1qwga_ 93 ECEKLGFEAVEISDGSSDISLEER--NNAIKRAKDNGFMVLTEVGKKMPD---------KDKQLTIDDRIKLINFDL-DA 160 (251)
T ss_dssp HHHHHTCCEEEECCSSSCCCHHHH--HHHHHHHHHTTCEEEEEECCSSHH---------HHTTCCHHHHHHHHHHHH-HH
T ss_pred HHHHcCCCEEEEcCCccCCCHHHH--HHHHHHHHhCCCEEeecccCCCCC---------CccccCHHHHHHHHHHHH-HC
Confidence 577899999988766666655433 488999999999999998842111 112355666 55555 46
Q ss_pred CCcEEEEe---cCcCCCCCCCCCCCCCHHHHHHHHhhh
Q 029540 78 DIDALAVC---IGNVHGKYPSSGPNLKLDLLKDLHALS 112 (192)
Q Consensus 78 gvD~LAva---iGt~HG~y~~~~p~ld~~~L~~I~~~~ 112 (192)
|.+.+=+= .|+..|.|.. .-.++-+++.+|.+.+
T Consensus 161 GA~~ViiEarEsg~~~Gi~~~-~g~~r~~~i~~i~~~l 197 (251)
T d1qwga_ 161 GADYVIIEGRESGKGKGLFDK-EGKVKENELDVLAKNV 197 (251)
T ss_dssp TCSEEEECCTTTCCSSTTBCT-TSCBCHHHHHHHHTTS
T ss_pred CCceeEeehhhcCCccceecC-CCChhHHHHHHHHHhC
Confidence 88888774 5778899986 4788999999998765
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=83.55 E-value=4.2 Score=31.22 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH---HHHHHhhhhCCcEEEEecCcCCCCCCCCCCC
Q 029540 23 NISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN---QAEEFIDETDIDALAVCIGNVHGKYPSSGPN 99 (192)
Q Consensus 23 Ni~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe---ea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ 99 (192)
++...++.+++|+..|..++.-+ . + ...++++ +..+.+++.|+|.+.++ -.-|.- .|.
T Consensus 117 ~~~~~~~~~~~a~~~g~~~~~~~--~----~--------~~~~~~~~~~~~~~~~~~~g~~~I~l~--DT~G~~---~P~ 177 (289)
T d1nvma2 117 EADVSKQHIEYARNLGMDTVGFL--M----M--------SHMIPAEKLAEQGKLMESYGATCIYMA--DSGGAM---SMN 177 (289)
T ss_dssp CGGGGHHHHHHHHHHTCEEEEEE--E----S--------TTSSCHHHHHHHHHHHHHHTCSEEEEE--CTTCCC---CHH
T ss_pred hhhhHhHHHHHHHHhCCceeeEe--e----e--------ccccCchhhhHHHHhhccccceeeeec--chhhcc---cch
Confidence 45556778889999998776421 1 1 1124444 45556677899986553 333332 243
Q ss_pred CCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------ecchHHHHHHHHHhc-CCCCCh
Q 029540 100 LKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------NVNTEVRKAYMDSLS-RPKSDL 164 (192)
Q Consensus 100 ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------Ni~T~l~~a~~~~~~-~~~~~~ 164 (192)
-=.++++.|++... .++|+-+|+ ..|+.-.....|++.|+.-| |..|+...++.+.+. +.+.|.
T Consensus 178 ~v~~~v~~l~~~~~-~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id~si~GlG~~~GN~~tE~lv~~l~~~g~~~~id~ 256 (289)
T d1nvma2 178 DIRDRMRAFKAVLK-PETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWNHGTDL 256 (289)
T ss_dssp HHHHHHHHHHHHSC-TTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHHTCBCCSCH
T ss_pred hHHHHHHHHHHHhc-ccccceeeechHHHHHHHHHHHHHHhCCcEeeccccccCCCCCCccHHHHHHHHHhcCCCCCCCH
Confidence 33455566766542 246776655 66888888999999999887 778888777776654 345576
Q ss_pred HHHHHHH
Q 029540 165 IHLMASA 171 (192)
Q Consensus 165 ~~~~~~~ 171 (192)
..++..+
T Consensus 257 ~~l~~~~ 263 (289)
T d1nvma2 257 YTLMDAA 263 (289)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=83.34 E-value=3.9 Score=27.62 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=50.4
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.++.++|.+.+++...|++-.-+ .-|..| ++++++|++..+ ++|+++==+.+- .+...+|.+.|+.-
T Consensus 31 a~~g~eal~~~~~~~~dlillD~---------~mP~~~G~el~~~lr~~~~--~~pvi~lt~~~~-~~~~~~a~~~Ga~~ 98 (119)
T d1peya_ 31 AANGLQALDIVTKERPDLVLLDM---------KIPGMDGIEILKRMKVIDE--NIRVIIMTAYGE-LDMIQESKELGALT 98 (119)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEES---------CCTTCCHHHHHHHHHHHCT--TCEEEEEESSCC-HHHHHHHHHTTCCE
T ss_pred eCCHHHHHHHHHhCCCCEEEEec---------cCCCCCHHHHHHHHHHhCC--CCcEEEEecCCC-HHHHHHHHHCCCCE
Confidence 46788999999999999887764 135555 899999998654 688888766554 35677899999753
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=83.01 E-value=2.6 Score=34.35 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=60.3
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCC-----CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYP-----SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~-----~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
-.+++-|+.. .++|+|.+-|.||.=...-. .+.| ++..+.++.+..+..++|++--||-..+.+ +.+|+.+
T Consensus 147 V~t~~~a~~l-~~~GaD~v~VGig~Gs~ctt~~~~G~g~p--~~sai~~~~~~~~~~~vpvIAdGGi~~~gd-iakAla~ 222 (330)
T d1vrda1 147 VATPEGTEAL-IKAGADAVKVGVGPGSICTTRVVAGVGVP--QLTAVMECSEVARKYDVPIIADGGIRYSGD-IVKALAA 222 (330)
T ss_dssp ECSHHHHHHH-HHTTCSEEEECSSCSTTCHHHHHHCCCCC--HHHHHHHHHHHHHTTTCCEEEESCCCSHHH-HHHHHHT
T ss_pred hhHHHHHHHH-HHcCCCEEeeccccCccccccceeccccc--cchhHHHHHHHHHhcCceEEecCCcccCCc-hheeeec
Confidence 4667777664 47899999998875421110 0123 344455565555556899999999888765 9999999
Q ss_pred CCeEeecchHHHH
Q 029540 139 GVRKFNVNTEVRK 151 (192)
Q Consensus 139 Gi~KINi~T~l~~ 151 (192)
|-.=|.++|.|.-
T Consensus 223 GAd~Vm~Gs~fa~ 235 (330)
T d1vrda1 223 GAESVMVGSIFAG 235 (330)
T ss_dssp TCSEEEESHHHHT
T ss_pred cCceeeecchhee
Confidence 9999999999853
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=82.22 E-value=3.3 Score=28.05 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCC-CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNL-KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l-d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..++++|.+.+++...|++=+-+- .|.. -++++++|++......+|+++=-+.+ ..++..+|.+.|+.-
T Consensus 30 a~~~~~al~~l~~~~~dlil~D~~---------mp~~~G~~l~~~lr~~~~~~~~pvi~lt~~~-~~~~~~~~~~~G~~d 99 (121)
T d1zesa1 30 AEDYDSAVNQLNEPWPDLILLDWM---------LPGGSGIQFIKHLKRESMTRDIPVVMLTARG-EEEDRVRGLETGADD 99 (121)
T ss_dssp ECSHHHHHHHSSSSCCSEEEECSS---------CTTSCHHHHHHHHHHSTTTTTSCEEEEESCC-SHHHHHHHHHHTCSE
T ss_pred ECChHHHHHHHHccCCCEEEeecC---------CCCCCHHHHHHHHHhCccCCCCeEEEEECCC-CHHHHHHHHHCCCCE
Confidence 367899999999999998877641 2332 37888999875433369988877766 567788999998754
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.97 E-value=1.9 Score=34.18 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=56.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCC-----------------------CCCCCCCCC---CCHHHHHHHHhhhccCCc
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVH-----------------------GKYPSSGPN---LKLDLLKDLHALSSKKGV 117 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~H-----------------------G~y~~~~p~---ld~~~L~~I~~~~~~~~i 117 (192)
++++.+..+-+++.|+|.+.+ ++|.- |.|.+ +. +-++.++.+++.++ ++
T Consensus 182 ~~~~~~i~~~~~~~g~~gi~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG--~~i~~~al~~v~~~~~~~~--~i 256 (312)
T d1gtea2 182 VTDIVSIARAAKEGGADGVTA-TNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSG--TAIRPIALRAVTTIARALP--GF 256 (312)
T ss_dssp SSCHHHHHHHHHHHTCSEEEE-CCCEEECCCBCTTSCBSSCBTTTTBBCCEEEES--GGGHHHHHHHHHHHHHHST--TC
T ss_pred chhHHHHHHHHHHhcccceEE-EeecccccccccccccccccccccccccccccC--cCcchhhHHHHHHHHHHcC--CC
Confidence 567777778888999999865 33321 22221 22 23556677777664 59
Q ss_pred cEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029540 118 LLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 118 PLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++-=||-..+ +++.+++.+|-.=|-++|.+.
T Consensus 257 pIi~~GGI~~~-~d~~~~l~aGA~~Vqv~ta~~ 288 (312)
T d1gtea2 257 PILATGGIDSA-ESGLQFLHSGASVLQVCSAVQ 288 (312)
T ss_dssp CEEEESSCCSH-HHHHHHHHTTCSEEEESHHHH
T ss_pred cEEEEcCCCCH-HHHHHHHHcCCCeeEECHhhh
Confidence 99988876554 558888899999999999875
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=81.87 E-value=9.6 Score=30.03 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCHHHHHHHhhhhCCcEEEE---ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 65 TDVNQAEEFIDETDIDALAV---CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAv---aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.||.-|++ +++-||.++=+ -||+=-|. .+..-|+.|.+.. ++|+++-+|-|.|.+ -..+.++|..
T Consensus 134 ~D~v~ak~-Le~~Gc~avMPlgsPIGSg~Gl-------~n~~~l~~i~~~~---~vPvIvDAGIG~pSd-Aa~AMElG~d 201 (251)
T d1xm3a_ 134 DDVVLARK-LEELGVHAIMPGASPIGSGQGI-------LNPLNLSFIIEQA---KVPVIVDAGIGSPKD-AAYAMELGAD 201 (251)
T ss_dssp SCHHHHHH-HHHHTCSCBEECSSSTTCCCCC-------SCHHHHHHHHHHC---SSCBEEESCCCSHHH-HHHHHHTTCS
T ss_pred CCHHHHHH-HHHcCChhHHHhhhhhhcCCCc-------CChHHHHHHHhcC---CccEEEecCCCCHHH-HHHHHHccCC
Confidence 46777777 55788877544 56665443 4667788888887 699999999999876 7888999999
Q ss_pred EeecchHHH
Q 029540 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
=|=++|.+.
T Consensus 202 aVLvNTAIA 210 (251)
T d1xm3a_ 202 GVLLNTAVS 210 (251)
T ss_dssp EEEESHHHH
T ss_pred EEEechhhh
Confidence 999999884
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=81.74 E-value=5.4 Score=30.91 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=70.4
Q ss_pred hhhhcCCCEeEeeCCC-----CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHH---HHH
Q 029540 2 EAIVLGFDSLMVDGSH-----LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQA---EEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea---~~F 73 (192)
..++.|.+.+.+=||. |+.+|-++..+.+++.+... +.|=+=.|. ++.+++ .++
T Consensus 30 ~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~-~~vi~g~~~-----------------~s~~~~i~~~~~ 91 (292)
T d2a6na1 30 YHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGR-IPVIAGTGA-----------------NATAEAISLTQR 91 (292)
T ss_dssp HHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS-SCEEEECCC-----------------SSHHHHHHHHHT
T ss_pred HHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhcccc-ceeEeeccc-----------------chHHHHHHHhcc
Confidence 3577899988887764 68899999999888887642 444332111 222333 345
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029540 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
+++.|+|.+.+.-- -.++.....+ ++-.++|.+.+ ++|++++ .|..++.+.+++..+.
T Consensus 92 a~~~Gad~~~~~pP---~~~~~~~~~i-~~~f~~v~~~~---~~pi~iYn~P~~~g~~~~~e~~~~L~~~ 154 (292)
T d2a6na1 92 FNDSGIVGCLTVTP---YYNRPSQEGL-YQHFKAIAEHT---DLPQILYNVPSATGCDLLPETVGRLAKV 154 (292)
T ss_dssp TTTSSCCEEEEECC---CSSCCCHHHH-HHHHHHHHHTC---SSCEEEEECHHHHSCCCCHHHHHHHHTS
T ss_pred HHhcCCcceeccCC---CCCCCCHHHH-HHHHHHHhhcc---CCcEEEEEeccccCCccCHHHHHHHhcC
Confidence 66789998877631 1122211112 33445566555 7999998 3556799999987664
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=81.55 E-value=3.5 Score=28.64 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCC-CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029540 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNL-KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l-d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.+++++|.+++++...|.+-+-+- -|.. -++.++.|++......+|+++-.+.+-++. ..+|.+.|+.
T Consensus 31 a~~~~eal~~~~~~~~dlil~D~~---------~p~~~G~~~~~~ir~~~~~~~~piI~lt~~~~~~~-~~~a~~~Ga~ 99 (139)
T d1w25a1 31 AMDGPTALAMAARDLPDIILLDVM---------MPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGD-RIQGLESGAS 99 (139)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESC---------CSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHH-HHHHHHHTCC
T ss_pred Eccchhhhhhhhcccceeeeeecc---------ccCCCchHHHHHhhhcccccCCCEEEEEcCCCHHH-HHHHHHcCCC
Confidence 367899999999999999888751 1332 267778888754334699999877776665 5678888864
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=80.91 E-value=3.3 Score=33.81 Aligned_cols=76 Identities=7% Similarity=0.085 Sum_probs=58.5
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEee
Q 029540 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFN 144 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KIN 144 (192)
++.+..+++++-|+--+=+.-=+-.|...+ +|++++++|.+.+ ++|++.-||-|..++ +.++.+ .++.=+=
T Consensus 221 ~l~~~i~~~~~~G~GEIlltdIdrDGt~~G----~D~el~~~i~~~~---~iPiIasGGi~s~~d-i~~ll~~~~v~gv~ 292 (323)
T d1jvna1 221 GVWELTRACEALGAGEILLNCIDKDGSNSG----YDLELIEHVKDAV---KIPVIASSGAGVPEH-FEEAFLKTRADACL 292 (323)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTTTCSC----CCHHHHHHHHHHC---SSCEEECSCCCSHHH-HHHHHHHSCCSEEE
T ss_pred hHHHHhhhhhccCcceeEEEeecccccccc----cchhHHHHHHHhC---CCCEEEECCCCCHHH-HHHHHHhCCCeEEE
Confidence 788999999999986666554455666543 5999999999988 699999999998876 666554 4677776
Q ss_pred cchHH
Q 029540 145 VNTEV 149 (192)
Q Consensus 145 i~T~l 149 (192)
+++.+
T Consensus 293 ~gs~~ 297 (323)
T d1jvna1 293 GAGMF 297 (323)
T ss_dssp ESHHH
T ss_pred EhhHH
Confidence 66665
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=80.35 E-value=6.8 Score=29.69 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=53.8
Q ss_pred CCCHHHHHHHhhhh-CCcEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029540 64 LTDVNQAEEFIDET-DIDALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 64 ~T~peea~~Fv~~T-gvD~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
-|++++...|+... .+|.+-+-. +.=.|. +.+.+ +++++++++.. .++++..=| |+..+.+..+.+.|
T Consensus 118 ~t~~~~~~~~l~~~~~~d~vlim~--v~PG~~--GQ~f~~~~l~kI~~l~~~~--~~~~I~VDG--GIn~~~i~~l~~aG 189 (220)
T d1h1ya_ 118 GTPVEEVFPLVEAENPVELVLVMT--VEPGFG--GQKFMPEMMEKVRALRKKY--PSLDIEVDG--GLGPSTIDVAASAG 189 (220)
T ss_dssp TSCGGGGHHHHHSSSCCSEEEEES--SCTTCS--SCCCCGGGHHHHHHHHHHC--TTSEEEEES--SCSTTTHHHHHHHT
T ss_pred ccchhHHHHHHhcccccceEEEEe--cCCCCc--ccccchhhhHHHHHHHhcC--CCceEEEEe--cCCHHHHHHHHHCC
Confidence 47778888888764 467665532 221122 23444 44455555433 258899999 78889999999999
Q ss_pred CeEeecchHHH
Q 029540 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.-+-+++.+.
T Consensus 190 ad~~V~GS~if 200 (220)
T d1h1ya_ 190 ANCIVAGSSIF 200 (220)
T ss_dssp CCEEEESHHHH
T ss_pred CCEEEECHHHH
Confidence 99999999874
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=80.17 E-value=13 Score=29.74 Aligned_cols=135 Identities=17% Similarity=0.091 Sum_probs=76.0
Q ss_pred hcCCCEeEeeCCCCCH--HHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccc-c--cc--ccCCCHHHHHHH----
Q 029540 5 VLGFDSLMVDGSHLPF--KDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE-D--YE--AKLTDVNQAEEF---- 73 (192)
Q Consensus 5 ~~GFtSVM~D~S~l~~--eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~-~--~~--~~~T~peea~~F---- 73 (192)
++||+.|=+.--.-|. .-|+..+++++++|++.|+.|--.+..-..-.|..... . .. ..-+.+++...|
T Consensus 38 ~~G~n~VRlrvW~~p~~g~~~~~~~~~~~~~a~~~Gm~vll~~hysd~Wadp~~q~~P~aw~~~~~~~~~~~~~~~t~~v 117 (334)
T d1foba_ 38 DAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTDLGTLKWQLYNYTLEV 117 (334)
T ss_dssp HHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEeeeeeCCCCCcCcHHHHHHHHHHHHHCCCEEEEEecCCCcccCCCcCCCcccccccccccHHHHHHHHHHHH
Confidence 5789988876211111 23678889999999999999999997653211111000 0 00 001112333333
Q ss_pred ---hhhhCCcEEEEecCcCC--CCCCCCCCCCCHHHHHHH----Hhhhcc----CCccEEeecCCCCCHHH----HHHHH
Q 029540 74 ---IDETDIDALAVCIGNVH--GKYPSSGPNLKLDLLKDL----HALSSK----KGVLLVLHGASGLSAEL----IKGCI 136 (192)
Q Consensus 74 ---v~~TgvD~LAvaiGt~H--G~y~~~~p~ld~~~L~~I----~~~~~~----~~iPLVlHGgSG~~~e~----~~~~i 136 (192)
++..|+....|.|||.+ |++-+..-.-+++.+.++ .+.+++ ..+-+.+|..+|.+... ++...
T Consensus 118 ~~~~k~~~~~~~~vqIgNE~n~g~~w~~g~~~~~~~~a~ll~a~~~aVr~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 197 (334)
T d1foba_ 118 CNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDDGWSWDQQNYFYETVL 197 (334)
T ss_dssp HHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEcccccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcccccceeeecccCCChhhhHHHHHHHH
Confidence 34568888899999997 555221112354443322 222322 23557799999988765 34455
Q ss_pred hcC
Q 029540 137 ERG 139 (192)
Q Consensus 137 ~~G 139 (192)
..|
T Consensus 198 ~~g 200 (334)
T d1foba_ 198 ATG 200 (334)
T ss_dssp HTS
T ss_pred hcC
Confidence 554
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=80.05 E-value=3 Score=29.13 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=46.7
Q ss_pred CCCHHHHHHHhhhh-------CCcEEEEecCcCCCCCCCCCCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029540 64 LTDVNQAEEFIDET-------DIDALAVCIGNVHGKYPSSGPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 64 ~T~peea~~Fv~~T-------gvD~LAvaiGt~HG~y~~~~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
.++.++|.+++++. ..|++-.-+ ..|..| ++++++|++.-....+|+++.-++..+ ++..+|
T Consensus 34 a~~g~eAl~~l~~~~~~~~~~~pdlillD~---------~mP~~dG~el~~~ir~~~~~~~iPvI~ls~~~~~-~~~~~a 103 (140)
T d1k68a_ 34 VRDGMEAMAYLRQEGEYANASRPDLILLDL---------NLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINE-DDIFHS 103 (140)
T ss_dssp ECSHHHHHHHHTTCGGGGSCCCCSEEEECS---------SCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCH-HHHHHH
T ss_pred ECCHHHHHHHHHHhHHhhccCCCCEEEEee---------ccccccChHHHHHHHhCcccCCCcEEEEeCCCCH-HHHHHH
Confidence 46788999998764 246655543 124433 789999987532236999998876655 457888
Q ss_pred HhcCCe
Q 029540 136 IERGVR 141 (192)
Q Consensus 136 i~~Gi~ 141 (192)
.+.|+.
T Consensus 104 ~~~Ga~ 109 (140)
T d1k68a_ 104 YDLHVN 109 (140)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 899976
|