Citrus Sinensis ID: 029543

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKIMENDSGSTPIPFAFIV
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcccccccccEEEEcccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccEEEcccccccHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEcccccEEEcccccccccHHHHHHccccccHEEEEHHHccccccccEEEEEcccccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccHHEccccHHHHHHHcccccEEEEEcccHHHHHHHHHHccccEcEEEEcccccccccEEEEc
Coil and Loop (DISEMBL)
MDTSIRNTSKRLCKIQNILKQnaaegskdTVLLKNLYLSCDPYMQKrmskldtslfysfcpggvimpsvtAFAGLyeicspkkgeYVYVSAASGAVGQLVGQFAKLAgchvvgsagskeKVDLLKnkfgfddafnykeepdlDVALKRMFLCWVDFVGIEYCRSLLLVLLfrplkimendsgstpipfafiv
Flexible Loop (DISEMBL)
mdtsirntskrLCKIQNILkqnaaegskdtvLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKimendsgstpipfafiv
Low Complexity Region (SEG)
MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSlllvllFRPLKIMENDSGSTPIPFAFIV
Disordered region (IsUnstruct)
***********LCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKIME**************
Disordered Region (DISOPRED)
MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKIMENDSGSTPIPFAFIV
Disordered Region (DISEMBL)
********SKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKIMENDSGSTPIPFAFIV
Disordered Region (DISPRO)
**T**RNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKIMENDSGSTPIPFAFIV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRSLLLVLLFRPLKIMENDSGSTPIPFAFIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q39172	345	NADP-dependent alkenal do	no	no	0.677	0.376	0.481	2e-36
Q39173	343	NADP-dependent alkenal do	no	no	0.578	0.323	0.681	3e-36
Q6WAU0	342	(+)-pulegone reductase OS	N/A	no	0.593	0.333	0.646	2e-35
Q9EQZ5	329	Prostaglandin reductase 1	yes	no	0.859	0.501	0.393	1e-22
Q14914	329	Prostaglandin reductase 1	yes	no	0.859	0.501	0.377	6e-22
Q91YR9	329	Prostaglandin reductase 1	yes	no	0.578	0.337	0.517	2e-21
Q3SZJ4	329	Prostaglandin reductase 1	yes	no	0.651	0.379	0.476	2e-21
Q29073	329	Prostaglandin reductase 1	yes	no	0.630	0.367	0.468	2e-21
P97584	329	Prostaglandin reductase 1	yes	no	0.651	0.379	0.469	2e-21
O34812	339	Putative NADP-dependent o	yes	no	0.625	0.353	0.434	2e-18

>sp|Q39172|P1_ARATH NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 106/193 (54%), Gaps = 63/193 (32%)

Query: 25  EGSKDTVLLKNLYLSCDPYMQKRMSKLDTS---LFYSFCPG------------------- 62
           EG+ ++VL+KNLYLSCDPYM+ RM K D S   L  ++ PG                   
Sbjct: 36  EGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDY 94

Query: 63  ---------------GVIMPSVTA-------------------------FAGLYEICSPK 82
                           VI P   A                         +AG YE+CSPK
Sbjct: 95  KKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPK 154

Query: 83  KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL 142
           +GE VYVSAASGAVGQLVGQ AK+ GC+VVGSAGSKEKVDLLK KFGFDDAFNYKEE DL
Sbjct: 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL 214

Query: 143 DVALKRMFLCWVD 155
             ALKR F   +D
Sbjct: 215 TAALKRCFPNGID 227

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)H homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 4

>sp|Q39173|P2_ARATH NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 88/113 (77%), Gaps = 2/113 (1%)

Query: 43  YMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQ 102
           +M  ++   D  L  S+  G + MP +TA+AG YE+CSPKKGE VYVSAASGAVGQLVGQ
Sbjct: 115 HMHFKIQHTDVPL--SYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQ 172

Query: 103 FAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD 155
           FAK+ GC+VVGSAGSKEKVDLLK KFGFDDAFNYKEE DL  ALKR F   +D
Sbjct: 173 FAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGID 225

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (By similarity). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)h homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q6WAU0|PULR_MENPI (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 90/116 (77%), Gaps = 2/116 (1%)

Query: 41  DPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLV 100
           +PY   ++   D  L  S+  G + MP +TA+AG +EICSPKKGE V+V+AA+G+VGQLV
Sbjct: 112 NPYNLFKIQDKDVPL--SYYVGILGMPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLV 169

Query: 101 GQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDF 156
           GQFAK+ GC+VVGSAGSKEKVDLLKNKFGFDDAFNYKEE D D ALKR F   +D 
Sbjct: 170 GQFAKMFGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEESDYDTALKRHFPEGIDI 225

Monoterpene synthase that catalyzes the specific reduction of the 4,8-double bond of (+)-pulegone to produce both (-)-menthone and (+)-isomenthone in a 70:30 ratio. Unable to utilize either (-)-isopiperitenone or (+)-cis-isopulegone, or to catalyze the reverse reaction with (-)-menthone or (+)-isomenthone. Has an absolute requirement for NADPH.

Mentha piperita (taxid: 34256)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q9EQZ5|PTGR1_CAVPO Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 18/183 (9%)

Query: 1   MDTSIRNTSKRLCKIQNILKQ---------NAAEGSKDTVLLKN----LYLSCDPYMQKR 47
           +D  +R  SKRL +   ++ Q         N+A  +   VL ++     ++S    ++K 
Sbjct: 46  VDPYMRIASKRLKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKL 105

Query: 48  MSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA 107
           +++    L  S   G + MP +TA+ GL E+C  K GE V VSAA+GAVG +VGQ AKL 
Sbjct: 106 LTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK 165

Query: 108 GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGIEYCR 163
           GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+     + C+ D VG E+  
Sbjct: 166 GCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLN 224

Query: 164 SLL 166
           ++L
Sbjct: 225 TVL 227

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q14914|PTGR1_HUMAN Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2

 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 100/183 (54%), Gaps = 18/183 (9%)

Query: 1   MDTSIRNTSKRLCKIQNILKQNAAE--GSKDTVLLKNLYLSCDPY-----------MQKR 47
           +D  +R  +KRL +   ++ Q  A+   SK+  L K   +   P            ++K 
Sbjct: 46  VDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKL 105

Query: 48  MSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA 107
           +++   ++  S   G V MP +TA+ GL EIC  K GE V V+AA+GAVG +VGQ AKL 
Sbjct: 106 LTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLK 165

Query: 108 GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGIEYCR 163
           GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+     + C+ D VG E+  
Sbjct: 166 GCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSN 224

Query: 164 SLL 166
           +++
Sbjct: 225 TVI 227

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha (By similarity). Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q91YR9|PTGR1_MOUSE Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 75/116 (64%), Gaps = 5/116 (4%)

Query: 58  SFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS 117
           S   G V MP +TA+ GL +IC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS
Sbjct: 116 SLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGS 175

Query: 118 KEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGIEYCRSLLLVL 169
            EKV  LK K GFD AFNYK    L+ AL+      + C+ D VG E+  +++L +
Sbjct: 176 DEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQM 230

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q3SZJ4|PTGR1_BOVIN Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 79/130 (60%), Gaps = 5/130 (3%)

Query: 38  LSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVG 97
           +S    ++K +++   +L  S   G V MP +TA+ GL +IC  K GE V VSAA+GAVG
Sbjct: 96  ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVG 155

Query: 98  QLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCW 153
            +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK      + C+
Sbjct: 156 SIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCY 214

Query: 154 VDFVGIEYCR 163
            D VG E+  
Sbjct: 215 FDNVGGEFSN 224

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q29073|PTGR1_PIG Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 5/126 (3%)

Query: 44  MQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQF 103
           +++ +++   +L  S   G V MP +TA+ GL +IC  K GE V V+AA+GAVG +VGQ 
Sbjct: 102 LERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQI 161

Query: 104 AKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGI 159
           AKL GC VVG+AGS EKV  LK K+GFD AFNYK    L+  LK+     + C+ D VG 
Sbjct: 162 AKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGG 220

Query: 160 EYCRSL 165
           E+  ++
Sbjct: 221 EFSNAV 226

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|P97584|PTGR1_RAT Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 5/130 (3%)

Query: 44  MQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQF 103
           ++K  ++    L  S   G V MP +TA+ GL +IC  K GE V V+AA+GAVG +VGQ 
Sbjct: 102 LRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQI 161

Query: 104 AKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGI 159
           AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+      + C+ D VG 
Sbjct: 162 AKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGG 220

Query: 160 EYCRSLLLVL 169
           E+  +++L +
Sbjct: 221 EFSNTVILQM 230

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|O34812|YFMJ_BACSU Putative NADP-dependent oxidoreductase YfmJ OS=Bacillus subtilis (strain 168) GN=yfmJ PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 2/122 (1%)

Query: 28  KDTVLLKNL-YLSCDPYMQKRMSKLDTSLFYSFCPGGVI-MPSVTAFAGLYEICSPKKGE 85
           K  +++ NL +       +  + K+DTSL  +    G++ M  +TA+ GL +I  PK+GE
Sbjct: 88  KGDIVIGNLSWQEFSAVSESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGE 147

Query: 86  YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVA 145
            V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK +  FD+A NYK   D+  A
Sbjct: 148 TVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKA 207

Query: 146 LK 147
           L+
Sbjct: 208 LQ 209

Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
9755699	311	quinone oxidoreductase-like protein [Ara	0.677	0.418	0.594	3e-39
6692816	343	allyl alcohol dehydrogenase [Nicotiana t	0.734	0.411	0.477	4e-38
444302246	351	Chain A, X-ray Crystal Structure Of A Do	0.734	0.401	0.477	4e-38
297811837	346	hypothetical protein ARALYDRAFT_909686 [	0.677	0.375	0.505	1e-37
297811835	345	AT-AER [Arabidopsis lyrata subsp. lyrata	0.677	0.376	0.507	1e-37
342898879	348	ketone/zingerone synthase 1 [Rubus idaeu	0.651	0.359	0.516	3e-37
342898881	352	ketone/zingerone synthase 2 [Rubus idaeu	0.630	0.343	0.648	4e-37
255577891	345	alcohol dehydrogenase, putative [Ricinus	0.822	0.457	0.475	4e-37
224092856	345	predicted protein [Populus trichocarpa]	0.604	0.336	0.669	9e-37
255547428	348	alcohol dehydrogenase, putative [Ricinus	0.645	0.356	0.489	9e-37

>gi|9755699|emb|CAC01711.1| quinone oxidoreductase-like protein [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 109/158 (68%), Gaps = 28/158 (17%)

Query: 25  EGSKDTVLLKNLYLSCDPYMQKRMSKLDTS---LFYSFCPG------------------- 62
           EG+ ++VL+KNLYLSCDPYM+  M K + S   L  ++ PG                   
Sbjct: 37  EGT-NSVLVKNLYLSCDPYMRICMGKPNPSTAALAQAYTPGQCYHLTHEHFKIQHTDVPL 95

Query: 63  ----GVI-MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS 117
               G++ MP +TA+ G YEICSPKKGE VYVSAASGAVGQLVGQFAK+ GC+VVGSAGS
Sbjct: 96  SYYTGLLGMPGMTAYVGFYEICSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGS 155

Query: 118 KEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD 155
           KEKVDLLK KFGFD AFNYKEEPDL  ALKR F   +D
Sbjct: 156 KEKVDLLKTKFGFDYAFNYKEEPDLSAALKRCFPNGID 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6692816|dbj|BAA89423.1| allyl alcohol dehydrogenase [Nicotiana tabacum]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 116/201 (57%), Gaps = 60/201 (29%)

Query: 14  KIQNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPG---------- 62
           +I+N+ +K    EGS D V++KNLYLSCDPYM+ RM K++ S   SF PG          
Sbjct: 26  EIKNVTIKLKVPEGSND-VVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAK 84

Query: 63  ------------------------GVIMPSVT------------------------AFAG 74
                                    +I P+ T                        A+AG
Sbjct: 85  VLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAG 144

Query: 75  LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAF 134
            +E+CSPKKGE V+VSAASGAVGQLVGQFAK+ GC+VVGSAGSKEKVDLLK+KFGFD+AF
Sbjct: 145 FHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAF 204

Query: 135 NYKEEPDLDVALKRMFLCWVD 155
           NYKEE DL  ALKR F   +D
Sbjct: 205 NYKEEQDLSAALKRYFPDGID 225

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444302246|pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum gi|444302247|pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum gi|444302248|pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond Reductase From Nicotiana Tabacum gi|444302249|pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond Reductase From Nicotiana Tabacum gi|444302250|pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double Bond Reductase From Nicotiana Tabacum gi|444302251|pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double Bond Reductase From Nicotiana Tabacum

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 116/201 (57%), Gaps = 60/201 (29%)

Query: 14  KIQNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPG---------- 62
           +I+N+ +K    EGS D V++KNLYLSCDPYM+ RM K++ S   SF PG          
Sbjct: 26  EIKNVTIKLKVPEGSND-VVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAK 84

Query: 63  ------------------------GVIMPSVT------------------------AFAG 74
                                    +I P+ T                        A+AG
Sbjct: 85  VLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAG 144

Query: 75  LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAF 134
            +E+CSPKKGE V+VSAASGAVGQLVGQFAK+ GC+VVGSAGSKEKVDLLK+KFGFD+AF
Sbjct: 145 FHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAF 204

Query: 135 NYKEEPDLDVALKRMFLCWVD 155
           NYKEE DL  ALKR F   +D
Sbjct: 205 NYKEEQDLSAALKRYFPDGID 225

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811837|ref|XP_002873802.1| hypothetical protein ARALYDRAFT_909686 [Arabidopsis lyrata subsp. lyrata] gi|297319639|gb|EFH50061.1| hypothetical protein ARALYDRAFT_909686 [Arabidopsis lyrata subsp. lyrata]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/192 (50%), Positives = 111/192 (57%), Gaps = 62/192 (32%)

Query: 25  EGSKDTVLLKNLYLSCDPYMQKRMS--KLDTSLFYSFCPG-------------------- 62
           EGS ++VL+KNLYLSCDPYM+ RMS  K  T+L  ++ PG                    
Sbjct: 38  EGS-NSVLVKNLYLSCDPYMRTRMSKPKPSTALAQAYTPGQPISGYGVSRVIESGHPDYQ 96

Query: 63  --------------GVIMPS-------------------------VTAFAGLYEICSPKK 83
                          VI P+                         +TA+AG YE+CSPKK
Sbjct: 97  KGDLLWGIVGWEEYSVITPTPQVHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKK 156

Query: 84  GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD 143
           GE VYVSAASGAVGQLVGQ AK+ GC+VVGSAGSKEKVDLLK KFGFDDAFNYKEEPDL 
Sbjct: 157 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEEPDLS 216

Query: 144 VALKRMFLCWVD 155
            ALKR F   +D
Sbjct: 217 AALKRCFPKGID 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811835|ref|XP_002873801.1| AT-AER [Arabidopsis lyrata subsp. lyrata] gi|297319638|gb|EFH50060.1| AT-AER [Arabidopsis lyrata subsp. lyrata]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 110/193 (56%), Gaps = 63/193 (32%)

Query: 25  EGSKDTVLLKNLYLSCDPYMQKRMSKLDTS---LFYSFCPG------------------- 62
           EGS + VL+KNLYLSCDPYM+ RM K D S   L  ++ PG                   
Sbjct: 36  EGS-NLVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYVVSRVVESGHPDY 94

Query: 63  ---------------GVIMPS-------------------------VTAFAGLYEICSPK 82
                           VI P+                         +TA+AG YE+CSPK
Sbjct: 95  KKGDLLWGIVAWEEYSVITPTPHVHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPK 154

Query: 83  KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL 142
           KGE VYVSAASGAVGQLVGQFAK+ GC+VVGSAGSKEKVDLLK KFGFDDAFNYKEEPDL
Sbjct: 155 KGETVYVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEEPDL 214

Query: 143 DVALKRMFLCWVD 155
             ALKR F   +D
Sbjct: 215 TAALKRCFPNGID 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342898879|gb|AEL78825.1| ketone/zingerone synthase 1 [Rubus idaeus]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 107/184 (58%), Gaps = 59/184 (32%)

Query: 31  VLLKNLYLSCDPYM------QKRMSKLDT------------------------------- 53
           +LLKNLYLSCDPYM        R+S +D+                               
Sbjct: 47  LLLKNLYLSCDPYMRARMTNHHRLSYVDSFKPGSPIIGYGVARVLESGNPKFNPGDLVWG 106

Query: 54  --------------SLF--------YSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA 91
                         SLF         S+  G + MP +TA+AG YEICSPKKGE VYVSA
Sbjct: 107 FTGWEEYSVITATESLFKIHNTDVPLSYYTGLLGMPGMTAYAGFYEICSPKKGETVYVSA 166

Query: 92  ASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFL 151
           ASGAVGQLVGQFAKL GC+VVGSAGSKEKVDLLKNKFGFD+AFNYKEE DLD AL+R F 
Sbjct: 167 ASGAVGQLVGQFAKLTGCYVVGSAGSKEKVDLLKNKFGFDEAFNYKEEADLDAALRRYFP 226

Query: 152 CWVD 155
             +D
Sbjct: 227 DGID 230

Source: Rubus idaeus

Species: Rubus idaeus

Genus: Rubus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342898881|gb|AEL78826.1| ketone/zingerone synthase 2 [Rubus idaeus]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 99/125 (79%), Gaps = 4/125 (3%)

Query: 52  DTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHV 111
           +T +  S+  G + MP +TA+AG YE+CSPKKGE VY+SAASGAVGQLVGQFAKL+GC+V
Sbjct: 131 NTDVPLSYYTGILGMPGMTAYAGFYEVCSPKKGETVYISAASGAVGQLVGQFAKLSGCYV 190

Query: 112 VGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDF----VGIEYCRSLLL 167
           VGSAG+KEKVDLLKNKFGFD+AFNYKEEP+LD ALKR F   +D     VG +   ++LL
Sbjct: 191 VGSAGTKEKVDLLKNKFGFDEAFNYKEEPNLDAALKRYFPEGIDIYFENVGGKMLDAVLL 250

Query: 168 VLLFR 172
            + FR
Sbjct: 251 NMRFR 255

Source: Rubus idaeus

Species: Rubus idaeus

Genus: Rubus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577891|ref|XP_002529818.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223530695|gb|EEF32567.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 123/221 (55%), Gaps = 63/221 (28%)

Query: 15  IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDT-SLFYSFCPG------GVI-- 65
           I + +K    EG+ D VL+KNLYLSCDPYM+ RM+K D+ S   SF PG      GV+  
Sbjct: 28  ITSSIKLQVPEGTTDAVLVKNLYLSCDPYMRGRMTKRDSPSFVSSFEPGKPLGGYGVVKV 87

Query: 66  ----MPS------VTAFAGLYE---ICSP------------------------------- 81
                P+         F G  E   I SP                               
Sbjct: 88  LESTHPNYKKGDLAWGFTGWEEYSVIVSPKLLIKIEHTDLPLSYYTGILGMHGVTAYAGF 147

Query: 82  ------KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN 135
                 KKGE+VYVSAASGAVGQLVGQFAK++GC+VVGSAGSKEKVD+LKNKFGFDDAFN
Sbjct: 148 FEVCSPKKGEFVYVSAASGAVGQLVGQFAKVSGCYVVGSAGSKEKVDMLKNKFGFDDAFN 207

Query: 136 YKEEPDLDVALKRMFLCWVDF----VGIEYCRSLLLVLLFR 172
           YKEEPDLD ALKR F   +D     VG E   ++LL +  R
Sbjct: 208 YKEEPDLDAALKRYFPEGIDIYFENVGGEMLDAVLLNMRIR 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092856|ref|XP_002309725.1| predicted protein [Populus trichocarpa] gi|222852628|gb|EEE90175.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 93/118 (78%), Gaps = 2/118 (1%)

Query: 38  LSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVG 97
           L   P +  ++   D  L  S+  G + MP +TA+AG YEIC+PKKGEYVY+SAASGAVG
Sbjct: 112 LIVSPRILIKIEHADVPL--SYYTGILGMPGMTAYAGFYEICTPKKGEYVYISAASGAVG 169

Query: 98  QLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD 155
           Q+VGQFAKL+GC+VVGSAGSKEKVDLLKNKFGFD+AFNYKEEPDL  ALKR F   +D
Sbjct: 170 QIVGQFAKLSGCYVVGSAGSKEKVDLLKNKFGFDEAFNYKEEPDLTAALKRYFPEGID 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547428|ref|XP_002514771.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223545822|gb|EEF47325.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 104/184 (56%), Gaps = 60/184 (32%)

Query: 32  LLKNLYLSCDPYMQKRMSKLDTSLF----------------------------------- 56
           L+KNLYLSCDPYM+ RM     S                                     
Sbjct: 47  LVKNLYLSCDPYMRGRMRDYHHSYIPPFVPGQPIQGFGISKVVASDNPDFKPGDFLSGFT 106

Query: 57  ----YSFCP---------------------GGVIMPSVTAFAGLYEICSPKKGEYVYVSA 91
               YSF P                     G + MP +TA+AG YE+CSPKKG+YV+VSA
Sbjct: 107 TWEEYSFIPYNSDQLRSIQLHDDIPLSLHLGLLGMPGLTAYAGFYEVCSPKKGDYVFVSA 166

Query: 92  ASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFL 151
           ASGAVGQLVGQFAKL GC+VVGSAG+ +KVDLLKNKFGFD+AFNYKEEP+LD ALKR F 
Sbjct: 167 ASGAVGQLVGQFAKLHGCYVVGSAGTSQKVDLLKNKFGFDEAFNYKEEPNLDAALKRYFP 226

Query: 152 CWVD 155
             +D
Sbjct: 227 EGID 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2148186	345	AT5G17000 [Arabidopsis thalian	0.536	0.298	0.718	2.9e-44
TAIR|locus:2097795	350	AT3G03080 [Arabidopsis thalian	0.510	0.28	0.755	2.9e-44
TAIR|locus:2148131	345	AER "alkenal reductase" [Arabi	0.536	0.298	0.708	1.4e-42
TAIR|locus:2028736	351	AT1G26320 [Arabidopsis thalian	0.552	0.301	0.685	1.1e-40
TAIR|locus:2154041	353	AT5G38000 [Arabidopsis thalian	0.510	0.277	0.724	5.8e-40
TAIR|locus:2148166	343	AT5G16990 [Arabidopsis thalian	0.578	0.323	0.681	5.1e-35
UNIPROTKB|Q6WAU0	342	Q6WAU0 "(+)-pulegone reductase	0.557	0.312	0.666	5.8e-34
TAIR|locus:2153799	353	AT5G37940 [Arabidopsis thalian	0.510	0.277	0.734	2e-33
TAIR|locus:2148116	346	AT5G16960 [Arabidopsis thalian	0.510	0.283	0.734	6.7e-33
TAIR|locus:2153759	353	AT5G37980 [Arabidopsis thalian	0.510	0.277	0.724	6.7e-33

TAIR|locus:2148186 AT5G17000 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 74/103 (71%), Positives = 84/103 (81%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T +  S+  G + MP +TA+AG YE+CSPK+GE VYVSAASGAVGQLVGQFAK+ GC+VV
Sbjct:   125 TDIPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQFAKMMGCYVV 184

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD 155
             GSAGS EKVDLLK KFGFDDAFNYKEEPDL  ALKR F   +D
Sbjct:   185 GSAGSTEKVDLLKTKFGFDDAFNYKEEPDLSAALKRCFPTGID 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2097795 AT3G03080 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 74/98 (75%), Positives = 83/98 (84%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T +  S+  G + MP +TA+AG YEICSPKKGE V+VSAASGAVGQLVGQFAK+ GC+VV
Sbjct:   130 TDVPLSYYTGLLGMPGMTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKIMGCYVV 189

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             GSAGS EKVDLLKNKFGFDDAFNYK EPDL+ ALKR F
Sbjct:   190 GSAGSNEKVDLLKNKFGFDDAFNYKAEPDLNAALKRCF 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2148131 AER "alkenal reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 73/103 (70%), Positives = 83/103 (80%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T +  S+  G + MP +TA+AG YE+CSPK+GE VYVSAASGAVGQLVGQ AK+ GC+VV
Sbjct:   125 TDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVV 184

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD 155
             GSAGSKEKVDLLK KFGFDDAFNYKEE DL  ALKR F   +D
Sbjct:   185 GSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGID 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP;IMP

GO:0032440 "2-alkenal reductase [NAD(P)

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2028736 AT1G26320 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 74/108 (68%), Positives = 83/108 (76%)

Query:    43 YMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQ 102
             Y   ++   D  L  S+  G + MP +TA+AG YE+CSPKKGE V+VSAASGAVGQLVGQ
Sbjct:   123 YSHFKIEHTDVPL--SYYTGLLGMPGMTAYAGFYEVCSPKKGETVFVSAASGAVGQLVGQ 180

Query:   103 FAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             FAKL GC+VVGSAGSKEKV LLK KFGFDDAFNYKEE D   ALKR F
Sbjct:   181 FAKLMGCYVVGSAGSKEKVYLLKTKFGFDDAFNYKEEKDFSAALKRYF 228

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2154041 AT5G38000 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 71/98 (72%), Positives = 81/98 (82%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T +  SF  G + +P +TA+ G YEICSPKKGE V+VSAASGAVGQLVGQFAK+AGC+VV
Sbjct:   133 TDVPLSFYTGLLGIPGLTAYIGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVV 192

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             GSA S+EKVDLLK KFG+DDAFNYKEE DL  ALKR F
Sbjct:   193 GSASSEEKVDLLKTKFGYDDAFNYKEEKDLSAALKRCF 230

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148166 AT5G16990 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 77/113 (68%), Positives = 88/113 (77%)

Query:    43 YMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQ 102
             +M  ++   D  L  S+  G + MP +TA+AG YE+CSPKKGE VYVSAASGAVGQLVGQ
Sbjct:   115 HMHFKIQHTDVPL--SYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQ 172

Query:   103 FAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD 155
             FAK+ GC+VVGSAGSKEKVDLLK KFGFDDAFNYKEE DL  ALKR F   +D
Sbjct:   173 FAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGID 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP

UNIPROTKB|Q6WAU0 Q6WAU0 "(+)-pulegone reductase" [Mentha x piperita (taxid:34256)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 74/111 (66%), Positives = 88/111 (79%)

Query:    41 DPYMQKRMSKLDTSLFYSFCPGGVI-MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQL 99
             +PY   ++   D  L Y     G++ MP +TA+AG +EICSPKKGE V+V+AA+G+VGQL
Sbjct:   112 NPYNLFKIQDKDVPLSYYV---GILGMPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQL 168

Query:   100 VGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             VGQFAK+ GC+VVGSAGSKEKVDLLKNKFGFDDAFNYKEE D D ALKR F
Sbjct:   169 VGQFAKMFGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEESDYDTALKRHF 219

GO:0042214 "terpene metabolic process" evidence=IDA

GO:0052579 "(+)-pulegone reductase, (+)-isomenthone as substrate, activity" evidence=IDA

GO:0052580 "(+)-pulegone reductase, (-)-menthone as substrate, activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

TAIR|locus:2153799 AT5G37940 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 72/98 (73%), Positives = 81/98 (82%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T +  SF  G + +P +TA+ G YEICSPKKGE V+VSAASGAVGQLVGQFAK+AGC+VV
Sbjct:   133 TDVPLSFYTGLLGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVV 192

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             GSA SKEKVDLLK KFG+DDAFNYKEE DL  ALKR F
Sbjct:   193 GSASSKEKVDLLKTKFGYDDAFNYKEEKDLSAALKRCF 230

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148116 AT5G16960 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 72/98 (73%), Positives = 82/98 (83%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T+   S+  G + MP +TA+ G YEIC+PKKG+ V+VSAASGAVGQLVGQFAKL GC+VV
Sbjct:   126 TNFPLSYYTGLLGMPGMTAYVGFYEICTPKKGDTVFVSAASGAVGQLVGQFAKLMGCYVV 185

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             GSAGSKEKVDLLKNKFGFDDAFNYKEE +L  ALKR F
Sbjct:   186 GSAGSKEKVDLLKNKFGFDDAFNYKEEHNLIGALKRCF 223

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2153759 AT5G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 71/98 (72%), Positives = 81/98 (82%)

Query:    53 TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV 112
             T +  SF  G + +P +TA+ G YEICSPKKGE V+VSAASGAVGQLVGQFAK+AGC+VV
Sbjct:   133 TDVPLSFYTGLLGIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVV 192

Query:   113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
             GSA SKEKVDLLK KFG+D+AFNYKEE DL  ALKR F
Sbjct:   193 GSASSKEKVDLLKTKFGYDEAFNYKEEHDLSAALKRCF 230

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VII0439 hypothetical protein (345 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	5e-65
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	7e-50
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	9e-40
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	1e-32
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	6e-32
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	3e-30
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-19
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	1e-16
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	2e-16
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	5e-15
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	6e-15
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	3e-14
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	8e-14
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-13
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-11
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-10
smart00829	287	smart00829, PKS_ER, Enoylreductase	2e-10
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	3e-10
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	5e-10
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	1e-09
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	2e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-09
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	5e-09
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-08
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	1e-08
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-08
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-08
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	6e-08
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-07
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	3e-07
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	8e-07
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	1e-06
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	3e-06
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	5e-06
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	6e-06
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-05
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-05
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-04
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	2e-04
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	3e-04
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-04
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-04
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	5e-04
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	5e-04
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	0.001
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	0.001
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	0.002
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.004

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score =  202 bits (517), Expect = 5e-65
 Identities = 95/185 (51%), Positives = 103/185 (55%), Gaps = 60/185 (32%)

Query: 25  EGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLF---------------------------- 56
            GS D VL+KNLYLSCDPYM+ RM   D SL+                            
Sbjct: 35  GGSGD-VLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKV 93

Query: 57  ------------YSFCPGGVI-------------------MPSVTAFAGLYEICSPKKGE 85
                       YS  P G                     MP +TA+AG YE+C PKKGE
Sbjct: 94  GDLVWGFTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGE 153

Query: 86  YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVA 145
            V+VSAASGAVGQLVGQ AKL GC+VVGSAGS EKVDLLKNK GFDDAFNYKEEPDLD A
Sbjct: 154 TVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAA 213

Query: 146 LKRMF 150
           LKR F
Sbjct: 214 LKRYF 218

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score =  164 bits (416), Expect = 7e-50
 Identities = 72/106 (67%), Positives = 83/106 (78%)

Query: 45  QKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFA 104
           Q R  +L   +  S+  G + M   TA+AG YE+CSPKKG+ V+VSAASGAVGQLVGQ A
Sbjct: 120 QLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLA 179

Query: 105 KLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
           KL GC+VVGSAGS +KVDLLKNK GFD+AFNYKEEPDLD ALKR F
Sbjct: 180 KLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYF 225

Length = 348

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score =  137 bits (348), Expect = 9e-40
 Identities = 49/83 (59%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           M  +TA+ GL EI  PK GE V VSAA+GAVG +VGQ AKL G  VVG AGS EK   L 
Sbjct: 128 MTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLV 187

Query: 126 NKFGFDDAFNYKEEPDLDVALKR 148
            + GFD A NYK  PDL  ALK 
Sbjct: 188 EELGFDAAINYK-TPDLAEALKE 209

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score =  119 bits (300), Expect = 1e-32
 Identities = 47/83 (56%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           MP +TA+ GL +I  PK GE V VSAA+GAVG +VGQ AKL GC VVG AG  EK D L 
Sbjct: 133 MPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLT 192

Query: 126 NKFGFDDAFNYKEEPDLDVALKR 148
            + GFD   +YK E D   ALK 
Sbjct: 193 EELGFDAGIDYKAE-DFAQALKE 214

Length = 340

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score =  116 bits (294), Expect = 6e-32
 Identities = 56/111 (50%), Positives = 67/111 (60%), Gaps = 6/111 (5%)

Query: 41  DPYMQKRMSKLDTSLFYSFCPG---GVI-MPSVTAFAGLYEICSPKKGEYVYVSAASGAV 96
           D   Q  + KL   L     P    GV+ MP +TA+ GL EIC PK GE V V+ A+GAV
Sbjct: 97  DGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAV 156

Query: 97  GQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALK 147
           G LVGQ AK+ GC V+G AGS +KV  LK + GFD  FNYK    L+ ALK
Sbjct: 157 GSLVGQIAKIKGCKVIGCAGSDDKVAWLK-ELGFDAVFNYKTV-SLEEALK 205

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score =  112 bits (282), Expect = 3e-30
 Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 5/128 (3%)

Query: 44  MQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQF 103
           ++K +++   +L  S   G V MP +TA+ GL EIC  K GE V V+AA+GAVG +VGQ 
Sbjct: 99  LEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQI 158

Query: 104 AKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGI 159
           AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+  LK+     + C+ D VG 
Sbjct: 159 AKLKGCKVVGAAGSDEKVAYLK-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217

Query: 160 EYCRSLLL 167
           E+  +++ 
Sbjct: 218 EFSNTVIG 225

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 64  VIMPS-VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
            ++ S +TA   L E+   K GE V V+AA+G  GQ   Q AKLAGCHV+G+  S EK +
Sbjct: 119 PLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAE 178

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
            LK+  G D   NYK E DL   LK+ +   VD V
Sbjct: 179 FLKS-LGCDRPINYKTE-DLGEVLKKEYPKGVDVV 211

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 58  SFCPGGVI-MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG 116
           SF  G  + +P++TA+  L+     K GE V V   SGAVG    Q A+ AG  V+ +A 
Sbjct: 118 SFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATAS 177

Query: 117 SKEKVDLLKNKFGFDDAFNYKEE 139
           S E  +L++   G D  FNY+ E
Sbjct: 178 SAEGAELVRQA-GADAVFNYRAE 199

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 6/94 (6%)

Query: 62  GGVIMPSVTAFAGLYE--ICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK 118
           G V +P +TA  G+ E    +P   + + VS A+GA G L GQ  +L GC  VVG  GS 
Sbjct: 131 GAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD 190

Query: 119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC 152
           EK  LLK++ GFD A NYK +   +VA +   LC
Sbjct: 191 EKCQLLKSELGFDAAINYKTD---NVAERLRELC 221

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 71.1 bits (175), Expect = 5e-15
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           +  +TA+  L+E+   K G+ V +  A+G VG    Q AK  G  V+ +A S    D L+
Sbjct: 127 LAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATA-SAANADFLR 185

Query: 126 NKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
              G D+  +Y +      A        VD V
Sbjct: 186 -SLGADEVIDYTKGDFERAAAPGG----VDAV 212

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA+  L+++   K GE V +   +  VG    Q AK  G  V+ +AGS+EK++  +   G
Sbjct: 126 TAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-ALG 184

Query: 130 FDDAFNYKEEPDLDVALKRMFLCW-----VDFVGIEYCRSLLLVL 169
            D A NY+ E D    +K           +D VG +Y    L  L
Sbjct: 185 ADVAINYRTE-DFAEEVKEATGGRGVDVILDMVGGDYLARNLRAL 228

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 67  PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN 126
           P  TA+  L      K G+ V V  A G VG L  Q AK AG  V+ +  S EK++L K 
Sbjct: 118 PLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAK- 175

Query: 127 KFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           + G D   +YKEE DL+  L+       D V
Sbjct: 176 ELGADHVIDYKEE-DLEEELRLTGGGGADVV 205

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 67.9 bits (167), Expect = 8e-14
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 62  GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV 121
             +++  +TA   L E    K G+ V V AA+G VG L+ Q+AK  G  V+G+  S+EK 
Sbjct: 115 AALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKA 174

Query: 122 DLLKNKFGFDDAFNYKEEPDLDVA 145
           +L +   G D   NY++E   D  
Sbjct: 175 ELARAA-GADHVINYRDE---DFV 194

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA+  L++    K GE V V  A+G VG    Q AK  G  VV    S EK++LLK + G
Sbjct: 129 TAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK-ELG 187

Query: 130 FDDAFNYKEEPDLDVALKRM 149
            D   NY+EE D    ++ +
Sbjct: 188 ADHVINYREE-DFVEQVREL 206

Length = 326

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
            + +  +TA   L +    K G+ V ++ ASG VG    Q AK  G HV G   ++   +
Sbjct: 123 ALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCSTR-NAE 181

Query: 123 LLKNKFGFDDAFNYKEEP 140
           L+++  G D+  +Y  E 
Sbjct: 182 LVRS-LGADEVIDYTTED 198

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
            + +  +TA+  L ++   +KGE V + AA+G VGQ   Q A+  G  V  + GS+EK +
Sbjct: 88  TLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKRE 147

Query: 123 LLKNKFGFDD 132
            L+   G  D
Sbjct: 148 FLRELGGPVD 157

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 66  MPSV--TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
           +P V  TA+  L ++   + GE V + AA+G VGQ   Q A+  G  V  +AGS EK D 
Sbjct: 84  VPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLARHLGAEVFATAGSPEKRDF 143

Query: 124 LKNKFGFDDA 133
           L+   G  D 
Sbjct: 144 LRA-LGIPDD 152

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 64  VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
           V+    TA  GL ++ +   G+ V V+AA+G +G L+ Q AK AG  VVG+AG   K  L
Sbjct: 124 VVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTAL 182

Query: 124 LKNKFGFDDAFNYKEEPD 141
           ++   G D A +Y   PD
Sbjct: 183 VR-ALGADVAVDYT-RPD 198

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           M  +TA+  L E+   + G+ V ++AAS +VG    Q A  AG  V+ +  + EK D L 
Sbjct: 127 MQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL 186

Query: 126 NKFGFDDAFNYKEEPDLDVALKR 148
              G        EE DL   + R
Sbjct: 187 AL-GAAHVIVTDEE-DLVAEVLR 207

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 60  CPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE 119
           C G       TA+  L++    + G  + ++  +G VG    Q AK AG  V+ +  SK 
Sbjct: 124 CAGL------TAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKR 176

Query: 120 KVDLLKNKFGFDDAFNYKEEPDLDVALK-----RMFLCWVDFVGIEYCRSLLLVLLFR 172
             + +K   G D   +Y +E D+   +K     R     +D VG E   +L   L F 
Sbjct: 177 NFEYVK-SLGADHVIDYNDE-DVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFN 232

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           +TA+  L+ +   K G+ V V    G V     QFAK AG  V+ ++ S EK++  K   
Sbjct: 146 LTAWNALFGLGPLKPGDTVLVQGTGG-VSLFALQFAKAAGARVIATSSSDEKLERAK-AL 203

Query: 129 GFDDAFNYKEEPD 141
           G D   NY+  PD
Sbjct: 204 GADHVINYRTTPD 216

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA+  L      + GE V V  A+G VG    Q AK  G  V+ +A S+EK+ L +   G
Sbjct: 126 TAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALG 184

Query: 130 FDDAFNYKEE 139
            D   +Y++ 
Sbjct: 185 ADHVIDYRDP 194

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           T ++ L++    K GE V +   +  +G    Q AK  G  V  +AGS EK        G
Sbjct: 126 TVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA-ACEALG 184

Query: 130 FDDAFNYKEE 139
            D A NY+EE
Sbjct: 185 ADIAINYREE 194

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 68  SVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK 127
            +TA+ GL +  + + G+ V +   +G VG +  Q AK AG  V  +A S EK    +  
Sbjct: 129 GITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFAR-S 186

Query: 128 FGFDDAFNYKEEPD 141
            G D    Y+E   
Sbjct: 187 LGADPIIYYRETVV 200

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 82  KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD 141
            KGE++ +  A+G  G +  Q A+L G  +  +A S +K++ LK + G     NY EE D
Sbjct: 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-QLGVPHVINYVEE-D 176

Query: 142 LDVALKRM 149
            +  + R+
Sbjct: 177 FEEEIMRL 184

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 82  KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD 141
           + GE V V  A   VG    Q AKL G  V+ +AGS++K++  K   G D   +Y++E  
Sbjct: 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE-LGADYVIDYRKEDF 223

Query: 142 LDVALKRMFLCWVDFV 157
           +    +      VD V
Sbjct: 224 VREVRELTGKRGVDVV 239

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 95  AVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV 144
            VG    Q AK  G   V+    S+EK++L K + G D   NY++E  ++ 
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAK-ELGADHVINYRDEDFVER 50

Length = 131

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 57  YSFCPGGVIMPS-VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA 115
           Y+F     I  + +TA+  L +    KKG+ V + A +  VG    Q A+  G   + + 
Sbjct: 113 YTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT 172

Query: 116 GSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF 150
            S+EKVD  K          Y +E      +K++ 
Sbjct: 173 SSEEKVDFCKK-LAAIILIRYPDEEGFAPKVKKLT 206

Length = 334

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 69  VTAFAGLY----------EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK 118
           VTA   L+          +     KG+ V +   S +VG L  Q AKLAG  V+ +A S 
Sbjct: 130 VTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SP 188

Query: 119 EKVDLLKNKFGFDDAFNYKE 138
           +  DL+K   G D  F+Y +
Sbjct: 189 KNFDLVK-SLGADAVFDYHD 207

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNK 127
           +TA+  L+E+ + + G+ V V +A+G VG   GQ  K      VVG+A S  K + LK  
Sbjct: 124 LTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTA-SASKHEALKEN 182

Query: 128 FGFDDAFNYKEE 139
            G     +Y+ +
Sbjct: 183 -GVTHVIDYRTQ 193

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 64  VIMPS--VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV 121
           V +    VTA+  L+       G+ V +  ASG VGQ + + A LAG  V G+A S+   
Sbjct: 118 VCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTA-SERNH 176

Query: 122 DLLKN 126
             L+ 
Sbjct: 177 AALRE 181

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVI 65
          K+ N ++  A +GS    L+KNLYLSCDPYM+ RM     S    F PG  I
Sbjct: 30 KLGNKIELKAPKGS-GAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRI 80

Length = 348

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 76  YEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN 135
           YEI   K  E     AA+G VG +  Q+AK  G  ++G+ GS +K    K   G     N
Sbjct: 136 YEI---KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKA-GAWQVIN 191

Query: 136 YKEE 139
           Y+EE
Sbjct: 192 YREE 195

Length = 327

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 67  PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL 124
             VTA   L     P  G  V V+ ASG VG+   Q A LAG HVV   GS  + + L
Sbjct: 117 AGVTALRALRRG-GPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGL 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           VT +  L +    K G++V +S A G +G L  Q+AK  G  V+      EK++L K + 
Sbjct: 152 VTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK-EL 209

Query: 129 GFDDAFNYKEEPDLDVALK 147
           G D   ++K+  D++   +
Sbjct: 210 GADAFVDFKKSDDVEAVKE 228

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 80  SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
             KKG+ V V+ A G VG    Q AK  G  V+    S EK+ +LK   
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELG 207

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 64  VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
            I P +TA+  L E      G++V  +AA+ AVG+++ Q AKL G   +      E+V+ 
Sbjct: 120 YINP-LTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEE 178

Query: 124 LK 125
           LK
Sbjct: 179 LK 180

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 58  SFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAG 116
            +    +I P+  A   +        G+ V V  A G +G L  Q+ K+ G   V+    
Sbjct: 135 DYEEAAMIEPAAVALHAVRLA-GITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDI 192

Query: 117 SKEKVDLLKNKFGFDDAFNYKEEPDLDVA 145
             EK+ + + + G DD  N KEE    V 
Sbjct: 193 DDEKLAVAR-ELGADDTINPKEEDVEKVR 220

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 31 VLLKNLYLSCDPYMQKRMSKLDT 53
          VL++ LYLS DPYM+  MS   +
Sbjct: 35 VLVRTLYLSVDPYMRGWMSDAKS 57

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 59  FCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK 118
            C G      +T +  L +  + K G++V V  A G +G +  Q+AK  G  V+    S+
Sbjct: 149 LCAG------ITTYRALKKA-NVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSE 200

Query: 119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVG 158
           EK++L K K G D   N  +   L+ A+K +    +D VG
Sbjct: 201 EKLELAK-KLGADHVINSSDSDALE-AVKEIADAIIDTVG 238

Length = 339

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 67  PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLK 125
           P  TA+ G  E  + + G  V V  A G +G L    AKL G   V+    S E+++L K
Sbjct: 152 PLATAYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAK 210

Query: 126 NKFGFDDAFNYKEEPDLDVALKRM 149
              G  D      E D    +  +
Sbjct: 211 EAGGA-DVVVNPSEDDAGAEILEL 233

Length = 350

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 65  IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDL 123
           I+P  T +    E+   K G+ V V    G VG    + AKL G   V+      E++++
Sbjct: 169 ILP--TGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDRVPERLEM 224

Query: 124 LKNKFGFDDAFNYKEEPDLDVALKRMFL-----CWVDFVGIEYCRSLLLVLLFRPLKIME 178
            ++  G  +  N++E  D+  AL+ +         +D VG+E   S L       LK +E
Sbjct: 225 ARSHLGA-ETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLK-LE 282

Query: 179 NDSGST 184
            D    
Sbjct: 283 TDRPDA 288

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 61  PGGVIMPSVTAFAGLYEI-------CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVV 112
           P G+  P   A   L            P+ GE V V    G VG L  Q AK AG   VV
Sbjct: 69  PDGL-PPERAALTALAATALNGVRDAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREVV 126

Query: 113 G 113
           G
Sbjct: 127 G 127

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA+  L+     + G+ + +   + +VG    + AK  G  V  +  S E+  LLK + G
Sbjct: 129 TAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELG 187

Query: 130 FDDAF 134
            D+  
Sbjct: 188 ADEVV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 81  PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP 140
              G+ V V  A G +G  V Q AK  G  V+      E+++  + + G DD  N  +E 
Sbjct: 157 VTAGDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLEFAR-ELGADDTINVGDED 214

Query: 141 DLDV 144
               
Sbjct: 215 VAAR 218

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 70  TAFAGLYEI-CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           TA+  L      P  GE V V  ASG  G    Q AK+ G  V+  +      D LK +F
Sbjct: 150 TAYHALKTAGLGP--GETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLK-EF 202

Query: 129 GFDDAFNYKEEPDLDVALKRMF 150
           G D+  +Y E  +    + +M 
Sbjct: 203 GADEVVDYDEVEEKVKEITKMA 224

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 68  SVTAFAGLYEIC----SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
            +TA++ L  +         G+ V +   SG VG    Q  K  G HV  +  S + + L
Sbjct: 143 GLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTC-STDAIPL 201

Query: 124 LKNKFGFDDAFNYKEEPD 141
           +K   G DD  +Y  E  
Sbjct: 202 VK-SLGADDVIDYNNEDF 218

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 79  CSPKKGEYVYVSAASGAVGQL-VGQFAKLAGCHVVGSAGSKEKVDLLKN 126
            +P+ G  V V+ A+G VG + V   AKL G  VV   G +E+ D LK+
Sbjct: 143 QTPEDGP-VLVTGATGGVGSIAVAILAKL-GYTVVALTGKEEQADYLKS 189

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.96
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.95
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.95
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.95
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.92
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.91
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.89
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.89
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.88
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.88
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.88
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.87
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.87
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.86
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.86
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.86
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.85
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.85
PLN02740	381	Alcohol dehydrogenase-like	99.84
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.84
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.84
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.83
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.83
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.83
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.83
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.82
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.82
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.82
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.81
PLN02827	378	Alcohol dehydrogenase-like	99.81
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.8
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.8
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.79
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.79
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.79
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.77
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.76
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.76
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.75
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.75
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.75
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.75
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.74
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.74
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.73
PRK10083	339	putative oxidoreductase; Provisional	99.73
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.72
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.72
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.71
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.71
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.7
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.7
PTZ00354	334	alcohol dehydrogenase; Provisional	99.7
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.7
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.69
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.68
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.68
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.68
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.68
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.68
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.67
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.67
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.67
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.67
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.66
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.66
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.66
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.66
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.66
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.65
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.65
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.64
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.64
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.63
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.62
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.62
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.62
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.62
PLN02702	364	L-idonate 5-dehydrogenase	99.62
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.62
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.62
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.61
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.61
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.61
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.61
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.61
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.61
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.6
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.6
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.6
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.6
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.59
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.59
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.59
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.59
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.59
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.59
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.59
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.59
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.58
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.58
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.58
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.57
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.57
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.56
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.56
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.56
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.55
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.55
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.55
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.55
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.54
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.54
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.53
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.53
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.52
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.52
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.51
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.51
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.5
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.49
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.48
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.44
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.42
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.41
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.34
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.09
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.9
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.39
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.28
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.27
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.23
PLN02494	477	adenosylhomocysteinase	98.22
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.2
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	98.05
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	98.0
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.94
PRK08324	681	short chain dehydrogenase; Validated	97.94
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.83
PRK05993	277	short chain dehydrogenase; Provisional	97.82
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	97.81
PRK08017	256	oxidoreductase; Provisional	97.78
PRK05693	274	short chain dehydrogenase; Provisional	97.69
PRK06057	255	short chain dehydrogenase; Provisional	97.69
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.68
PRK05872	296	short chain dehydrogenase; Provisional	97.65
PRK06182	273	short chain dehydrogenase; Validated	97.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.62
PRK07825	273	short chain dehydrogenase; Provisional	97.6
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.57
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.56
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.55
PRK07060	245	short chain dehydrogenase; Provisional	97.54
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.54
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.53
PRK12742	237	oxidoreductase; Provisional	97.53
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.53
PRK07576	264	short chain dehydrogenase; Provisional	97.52
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.52
PRK12829	264	short chain dehydrogenase; Provisional	97.51
PRK08265	261	short chain dehydrogenase; Provisional	97.51
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.49
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.48
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.47
PRK07063	260	short chain dehydrogenase; Provisional	97.45
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.45
PRK06139	330	short chain dehydrogenase; Provisional	97.44
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.43
PLN02780	320	ketoreductase/ oxidoreductase	97.43
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.42
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.4
PRK08339	263	short chain dehydrogenase; Provisional	97.4
PRK06949	258	short chain dehydrogenase; Provisional	97.39
PRK06101	240	short chain dehydrogenase; Provisional	97.39
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.39
PRK07890	258	short chain dehydrogenase; Provisional	97.38
PRK06500	249	short chain dehydrogenase; Provisional	97.38
PRK09186	256	flagellin modification protein A; Provisional	97.36
PRK06180	277	short chain dehydrogenase; Provisional	97.35
PRK07814	263	short chain dehydrogenase; Provisional	97.33
PRK05866	293	short chain dehydrogenase; Provisional	97.33
PRK05717	255	oxidoreductase; Validated	97.32
PRK05884	223	short chain dehydrogenase; Provisional	97.32
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.3
PRK07067	257	sorbitol dehydrogenase; Provisional	97.3
PRK06841	255	short chain dehydrogenase; Provisional	97.3
PRK07478	254	short chain dehydrogenase; Provisional	97.29
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.29
PRK05867	253	short chain dehydrogenase; Provisional	97.28
PRK07062	265	short chain dehydrogenase; Provisional	97.28
PRK05854	313	short chain dehydrogenase; Provisional	97.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.28
PRK07024	257	short chain dehydrogenase; Provisional	97.27
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.27
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.27
PRK07831	262	short chain dehydrogenase; Provisional	97.27
PRK08177	225	short chain dehydrogenase; Provisional	97.27
PRK08267	260	short chain dehydrogenase; Provisional	97.26
PRK09291	257	short chain dehydrogenase; Provisional	97.26
PRK07035	252	short chain dehydrogenase; Provisional	97.26
PRK08703	239	short chain dehydrogenase; Provisional	97.24
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.23
PRK12828	239	short chain dehydrogenase; Provisional	97.23
PRK07109	334	short chain dehydrogenase; Provisional	97.21
PRK06484	520	short chain dehydrogenase; Validated	97.21
PRK06194	287	hypothetical protein; Provisional	97.2
PRK06196	315	oxidoreductase; Provisional	97.2
PRK06953	222	short chain dehydrogenase; Provisional	97.19
PRK09072	263	short chain dehydrogenase; Provisional	97.19
PRK06484	520	short chain dehydrogenase; Validated	97.19
PRK05876	275	short chain dehydrogenase; Provisional	97.18
PRK07326	237	short chain dehydrogenase; Provisional	97.18
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.17
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.17
PRK06172	253	short chain dehydrogenase; Provisional	97.16
PLN02253	280	xanthoxin dehydrogenase	97.16
PRK06483	236	dihydromonapterin reductase; Provisional	97.16
PRK07677	252	short chain dehydrogenase; Provisional	97.16
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.14
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.14
PRK10538	248	malonic semialdehyde reductase; Provisional	97.13
PLN03209	576	translocon at the inner envelope of chloroplast su	97.13
PRK06125	259	short chain dehydrogenase; Provisional	97.13
PRK07904	253	short chain dehydrogenase; Provisional	97.12
PRK06197	306	short chain dehydrogenase; Provisional	97.12
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.12
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.12
PRK12939	250	short chain dehydrogenase; Provisional	97.1
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.08
PRK06482	276	short chain dehydrogenase; Provisional	97.08
PRK06198	260	short chain dehydrogenase; Provisional	97.08
PRK09242	257	tropinone reductase; Provisional	97.07
PRK06181	263	short chain dehydrogenase; Provisional	97.06
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.06
PRK08643	256	acetoin reductase; Validated	97.05
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.05
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.04
TIGR00438	188	rrmJ cell division protein FtsJ.	97.04
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.03
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.03
COG4122	219	Predicted O-methyltransferase [General function pr	97.02
PRK05875	276	short chain dehydrogenase; Provisional	97.02
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.01
PRK07454	241	short chain dehydrogenase; Provisional	97.01
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.01
PRK08251	248	short chain dehydrogenase; Provisional	97.0
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.99
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.98
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.98
PRK07774	250	short chain dehydrogenase; Provisional	96.98
PRK08589	272	short chain dehydrogenase; Validated	96.97
PRK06138	252	short chain dehydrogenase; Provisional	96.96
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.96
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.96
PRK06914	280	short chain dehydrogenase; Provisional	96.96
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.94
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.94
PRK08862	227	short chain dehydrogenase; Provisional	96.93
PRK08628	258	short chain dehydrogenase; Provisional	96.93
PRK07102	243	short chain dehydrogenase; Provisional	96.92
PRK07832	272	short chain dehydrogenase; Provisional	96.91
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.89
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.89
PRK08263	275	short chain dehydrogenase; Provisional	96.88
CHL00194	317	ycf39 Ycf39; Provisional	96.88
PRK06924	251	short chain dehydrogenase; Provisional	96.88
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.88
PRK08264	238	short chain dehydrogenase; Validated	96.88
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.86
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.86
PRK08226	263	short chain dehydrogenase; Provisional	96.85
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.84
PRK06114	254	short chain dehydrogenase; Provisional	96.84
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.84
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.83
PRK07074	257	short chain dehydrogenase; Provisional	96.83
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.81
KOG0725	270	consensus Reductases with broad range of substrate	96.79
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.78
PRK06720	169	hypothetical protein; Provisional	96.77
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.76
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.75
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.74
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.74
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.73
KOG1208	314	consensus Dehydrogenases with different specificit	96.73
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.72
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.72
PRK07856	252	short chain dehydrogenase; Provisional	96.71
PRK07806	248	short chain dehydrogenase; Provisional	96.71
PRK08303	305	short chain dehydrogenase; Provisional	96.7
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.69
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.69
PRK04148	134	hypothetical protein; Provisional	96.69
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
PRK06523	260	short chain dehydrogenase; Provisional	96.67
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.67
PRK07775	274	short chain dehydrogenase; Provisional	96.65
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.65
PRK12367	245	short chain dehydrogenase; Provisional	96.64
PRK06179	270	short chain dehydrogenase; Provisional	96.63
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.62
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.62
PRK06398	258	aldose dehydrogenase; Validated	96.62
PRK07791	286	short chain dehydrogenase; Provisional	96.61
PRK05650	270	short chain dehydrogenase; Provisional	96.61
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.57
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.57
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.56
PRK07069	251	short chain dehydrogenase; Validated	96.56
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.55
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.55
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.55
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	96.54
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.53
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.51
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.5
PRK05599	246	hypothetical protein; Provisional	96.5
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	96.5
PLN02583	297	cinnamoyl-CoA reductase	96.48
PLN02686	367	cinnamoyl-CoA reductase	96.47
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.47
PRK09135	249	pteridine reductase; Provisional	96.47
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.46
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.46
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	96.44
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.43
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.43
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.43
PRK12747	252	short chain dehydrogenase; Provisional	96.41
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.4
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.4
PLN02476	278	O-methyltransferase	96.4
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.39
PRK12743	256	oxidoreductase; Provisional	96.37
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.37
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.36
PRK07201	657	short chain dehydrogenase; Provisional	96.36
KOG1252	362	consensus Cystathionine beta-synthase and related	96.35
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.34
PRK07577	234	short chain dehydrogenase; Provisional	96.34
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.31
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.29
PRK12746	254	short chain dehydrogenase; Provisional	96.29
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.29
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.28
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	96.27
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.27
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.26
PRK04457	262	spermidine synthase; Provisional	96.26
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.26
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.25
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.24
PRK07578	199	short chain dehydrogenase; Provisional	96.23
PRK08278	273	short chain dehydrogenase; Provisional	96.21
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.2
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.19
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.19
PRK05855	582	short chain dehydrogenase; Validated	96.16
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.15
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.15
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.14
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.14
PRK14982	340	acyl-ACP reductase; Provisional	96.13
PRK07023	243	short chain dehydrogenase; Provisional	96.12
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.09
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.08
PRK07985	294	oxidoreductase; Provisional	96.07
COG2910	211	Putative NADH-flavin reductase [General function p	96.07
PRK08219	227	short chain dehydrogenase; Provisional	96.05
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.05
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.02
PLN02650	351	dihydroflavonol-4-reductase	96.02
PLN00015	308	protochlorophyllide reductase	96.02
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.02
PRK06128	300	oxidoreductase; Provisional	96.01
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.99
PLN03075	296	nicotianamine synthase; Provisional	95.98
PRK08309	177	short chain dehydrogenase; Provisional	95.97
PRK12937	245	short chain dehydrogenase; Provisional	95.95
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	95.95
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.94
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.94
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.93
PRK07402	196	precorrin-6B methylase; Provisional	95.93
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.9
PRK06940	275	short chain dehydrogenase; Provisional	95.9
PRK09134	258	short chain dehydrogenase; Provisional	95.89
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.88
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.86
PRK06701	290	short chain dehydrogenase; Provisional	95.85
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.85
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.83
PRK12935	247	acetoacetyl-CoA reductase; Provisional	95.82
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.81
PLN02653	340	GDP-mannose 4,6-dehydratase	95.81
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.79
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	95.79
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.79
PRK08317	241	hypothetical protein; Provisional	95.79
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.78
PRK12827	249	short chain dehydrogenase; Provisional	95.77
PLN02214	342	cinnamoyl-CoA reductase	95.77
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.77
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.75
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.74
PRK06947	248	glucose-1-dehydrogenase; Provisional	95.74
PRK06123	248	short chain dehydrogenase; Provisional	95.74
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.73
PRK14967	223	putative methyltransferase; Provisional	95.72
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	95.72
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.72
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.7
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.69
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.68
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.63
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	95.6
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.6
PRK07041	230	short chain dehydrogenase; Provisional	95.59
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.57
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.57
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	95.53
PLN00198	338	anthocyanidin reductase; Provisional	95.52
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.51
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.49
PLN02427	386	UDP-apiose/xylose synthase	95.47
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	95.45
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.44
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.43
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.4
PRK12744	257	short chain dehydrogenase; Provisional	95.34
PLN00203	519	glutamyl-tRNA reductase	95.31
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	95.29
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.27
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.26
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	95.25
COG1028	251	FabG Dehydrogenases with different specificities (	95.23
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.23
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	95.21
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.19
PLN03013	429	cysteine synthase	95.19
PLN02565	322	cysteine synthase	95.17
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.15
PLN02778	298	3,5-epimerase/4-reductase	95.13
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	95.12
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.11
PLN02572	442	UDP-sulfoquinovose synthase	95.08
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.07
PRK00811	283	spermidine synthase; Provisional	95.04
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.01
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.98
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.94
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.91
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.89
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	94.88
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.88
PRK10669	558	putative cation:proton antiport protein; Provision	94.87
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	94.86
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	94.83
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.81
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	94.8
PLN02240	352	UDP-glucose 4-epimerase	94.8
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	94.8
PRK01581	374	speE spermidine synthase; Validated	94.77
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.76
PLN02206	442	UDP-glucuronate decarboxylase	94.74
PLN02366	308	spermidine synthase	94.71
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	94.71
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	94.67
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.66
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	94.65
TIGR01746	367	Thioester-redct thioester reductase domain. It has	94.64
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	94.63
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.47
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.46
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	94.44
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	94.42
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	94.39
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.38
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	94.38
PLN02166	436	dTDP-glucose 4,6-dehydratase	94.35
PRK11761	296	cysM cysteine synthase B; Provisional	94.34
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.31
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.28
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.24
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	94.24
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	94.23
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	94.2
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	94.19
PRK14904	445	16S rRNA methyltransferase B; Provisional	94.19
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.18
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.16
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.16
PLN02928	347	oxidoreductase family protein	94.13
PLN02970	328	serine racemase	94.08
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.07
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	94.06
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.06

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.96  E-value=1.9e-28  Score=190.11  Aligned_cols=165  Identities=43%  Similarity=0.593  Sum_probs=152.7

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCC-------------------------------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGV-------------------------------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~-------------------------------   64 (192)
                      ++....++|.+..++||++..|+++||+++.++.+. .+|.+|+.+|..                               
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~-~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~GWq~  105 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDA-PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVSGWQE  105 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCC-cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecccceE
Confidence            556667788889999999999999999999999987 588888888876                               


Q ss_pred             --------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           65 --------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        65 --------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                                                ..|..|||.+|.+.+++++|++|+|.+|+|++|..+.|+||..|+||+.+..++
T Consensus       106 y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~  185 (340)
T COG2130         106 YAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA  185 (340)
T ss_pred             EEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH
Confidence                                      789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       119 ~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +|.+++++++|.|.+|||+++ ++.+.+++..++|+    |++|++.++..+..|+..++ +++|..++
T Consensus       186 eK~~~l~~~lGfD~~idyk~~-d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~  253 (340)
T COG2130         186 EKCDFLTEELGFDAGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQ  253 (340)
T ss_pred             HHHHHHHHhcCCceeeecCcc-cHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhh
Confidence            999999966999999999999 99999999998877    99999999999999999996 48887664

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.95  E-value=1.4e-28  Score=196.58  Aligned_cols=169  Identities=24%  Similarity=0.332  Sum_probs=141.8

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCC-CcccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDT-SLFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~-~~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|++|+|++.+..|++.+|+|+||++|+..++.       .+|+..+ ....|+     .|++.|+|++| +..+++
T Consensus        99 ~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~-------~iP~~~d~~~aApl-----lCaGiT~y~al-k~~~~~  165 (339)
T COG1064          99 YCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVV-------KIPEGLDLAEAAPL-----LCAGITTYRAL-KKANVK  165 (339)
T ss_pred             cccCcccccCCCccccceeecCcceeEEEEchHHeE-------ECCCCCChhhhhhh-----hcCeeeEeeeh-hhcCCC
Confidence            389999999999999999999999999999988876       3333211 122333     78999999999 568999


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-ccccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-DFVGIEY  161 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-d~~g~~~  161 (192)
                      ||++|+|+| .|++|.+++|+||++|++|++++++++|++.++ ++|+|+++|.+++ +..+.+++.. +.+ |+++..+
T Consensus       166 pG~~V~I~G-~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~-~lGAd~~i~~~~~-~~~~~~~~~~-d~ii~tv~~~~  241 (339)
T COG1064         166 PGKWVAVVG-AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHVINSSDS-DALEAVKEIA-DAIIDTVGPAT  241 (339)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH-HhCCcEEEEcCCc-hhhHHhHhhC-cEEEECCChhh
Confidence            999999999 789999999999999999999999999999999 9999999998766 7888887752 333 8999779


Q ss_pred             HHHHHHhhcCCC-eEEEeeCC-CC-Cccccc
Q 029543          162 CRSLLLVLLFRP-LKIMENDS-GS-TPIPFA  189 (192)
Q Consensus       162 ~~~~~~~l~~~G-~v~~G~~~-~~-~~~~~~  189 (192)
                      ++.+++.|+++| ++++|... ++ .++|..
T Consensus       242 ~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~  272 (339)
T COG1064         242 LEPSLKALRRGGTLVLVGLPGGGPIPLLPAF  272 (339)
T ss_pred             HHHHHHHHhcCCEEEEECCCCCcccCCCCHH
Confidence            999999999999 46889884 44 335444

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.95  E-value=4.3e-26  Score=184.58  Aligned_cols=165  Identities=28%  Similarity=0.310  Sum_probs=138.1

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhccc-------C--------------CCcccccCCCCC----------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL-------D--------------TSLFYSFCPGGV----------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~-------~--------------~~~~~~~~~g~~----------   64 (192)
                      ++....+.|.+.++||||+++++++||.+.....+.       .              ++.+..|.+|+.          
T Consensus        15 l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~   94 (326)
T COG0604          15 LKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRD   94 (326)
T ss_pred             eEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCC
Confidence            677888889999999999999999999665433321       0              111222222221          


Q ss_pred             -----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           65 -----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        65 -----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                                                   +++++|||+++++..++++|++|||+||+|++|++++|+||++|+++++++
T Consensus        95 G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~  174 (326)
T COG0604          95 GGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV  174 (326)
T ss_pred             CcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe
Confidence                                         788999999998888999999999999999999999999999998877777


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          116 GSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       116 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .++++.++++ ++|+|++|||+++ ++.+++++++++ ++    |++|++++..++++|+++|+ +.+|..++
T Consensus       175 ~s~~k~~~~~-~lGAd~vi~y~~~-~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g  245 (326)
T COG0604         175 SSSEKLELLK-ELGADHVINYREE-DFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSG  245 (326)
T ss_pred             cCHHHHHHHH-hcCCCEEEcCCcc-cHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCC
Confidence            7888888888 9999999999988 899999999987 66    99999999999999999995 68888774

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=175.42  Aligned_cols=176  Identities=24%  Similarity=0.308  Sum_probs=147.6

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCC-----------------------------
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGV-----------------------------   64 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~-----------------------------   64 (192)
                      ...+....+.|.+.+++++||..++++|..+.....+.......|+.+|.+                             
T Consensus        21 dvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~~g~  100 (336)
T KOG1197|consen   21 DVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNPFGA  100 (336)
T ss_pred             ceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCccccccccEEEEeccchh
Confidence            345566678889999999999999999984332222221112233444443                             


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                                                 ...++|||.-+++..++++|++|||+.|+||+|++++|++|+.|+++|+++.+
T Consensus       101 yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asT  180 (336)
T KOG1197|consen  101 YAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAST  180 (336)
T ss_pred             hheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEecc
Confidence                                       67889999999899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCC-eEEEeeCCCC-Ccccccc
Q 029543          118 KEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRP-LKIMENDSGS-TPIPFAF  190 (192)
Q Consensus       118 ~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G-~v~~G~~~~~-~~~~~~~  190 (192)
                      .+|.+.++ +.|+.+.|+++.+ |+.+++++++.+ |+    |.+|.+++...+++||++| .|.+|..++- .|+|+.+
T Consensus       181 aeK~~~ak-enG~~h~I~y~~e-D~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~  258 (336)
T KOG1197|consen  181 AEKHEIAK-ENGAEHPIDYSTE-DYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQ  258 (336)
T ss_pred             HHHHHHHH-hcCCcceeeccch-hHHHHHHhccCCCCceeeeccccchhhHHHHHHhccCceEEEeccccCCCCCeehhh
Confidence            99999999 9999999999999 999999999977 87    8999999999999999999 5799999886 5677765


Q ss_pred             c
Q 029543          191 I  191 (192)
Q Consensus       191 ~  191 (192)
                      +
T Consensus       259 l  259 (336)
T KOG1197|consen  259 L  259 (336)
T ss_pred             c
Confidence            4

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=9.2e-25  Score=171.14  Aligned_cols=173  Identities=18%  Similarity=0.182  Sum_probs=145.1

Q ss_pred             ccccchhhhhhhhccccc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      -|+.|++|+|+.+.+.+- +.+|.+++|++.+..++.       .+|+.     -++..|...+|+++++||. +++.++
T Consensus       102 ~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~-------KLPd~-----vs~eeGAl~ePLsV~~HAc-r~~~vk  168 (354)
T KOG0024|consen  102 FCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCY-------KLPDN-----VSFEEGALIEPLSVGVHAC-RRAGVK  168 (354)
T ss_pred             hhhCcccccCCccccccCCCcCCceEEEEEechHhee-------eCCCC-----Cchhhcccccchhhhhhhh-hhcCcc
Confidence            389999999999998875 568999999999988888       66654     5677888899999999999 789999


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc---ccHHHHHHhhccC---Cc-
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE---PDLDVALKRMFLC---WV-  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~---~~~~~~i~~~~~~---g~-  154 (192)
                      +|++|||+| +||||+++..+||++|| +|++++..+.|++.++ ++|++.+.+....   +++.+.++...++   .+ 
T Consensus       169 ~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak-~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~  246 (354)
T KOG0024|consen  169 KGSKVLVLG-AGPIGLLTGLVAKAMGASDVVITDLVANRLELAK-KFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT  246 (354)
T ss_pred             cCCeEEEEC-CcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH-HhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence            999999999 89999999999999999 9999999999999999 8999988776543   1344555544442   22 


Q ss_pred             -ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCccccccc
Q 029543          155 -DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPFAFI  191 (192)
Q Consensus       155 -d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~~~  191 (192)
                       ||+|. .+++.++.+++.+|. +++|..+...++|+..+
T Consensus       247 ~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v  286 (354)
T KOG0024|consen  247 FDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDV  286 (354)
T ss_pred             EEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhh
Confidence             99995 599999999999995 67888777788887653

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.91  E-value=4.2e-23  Score=160.07  Aligned_cols=159  Identities=61%  Similarity=0.874  Sum_probs=141.8

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCC--------------------------------------
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGV--------------------------------------   64 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~--------------------------------------   64 (192)
                      ......+|+|+..|.++||++|.++.....+ +..++.+|-.                                      
T Consensus        33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S~~~~~~~GD~v~g~~gWeeysii~~~  112 (343)
T KOG1196|consen   33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDSGHPNYKKGDLVWGIVGWEEYSVITPN  112 (343)
T ss_pred             CCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEecCCCCCCcCceEEEeccceEEEEecCc
Confidence            3455779999999999999999888766544 6666766664                                      


Q ss_pred             ----------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           65 ----------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        65 ----------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                                            .+|.+|||..+++.+.++.|++|+|.||+|.+|+++-|+||.+|++|+.++.|++|.+
T Consensus       113 ~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~  192 (343)
T KOG1196|consen  113 DLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVD  192 (343)
T ss_pred             chhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhh
Confidence                                  7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          123 LLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       123 ~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .++.++|.|..+||.++.++.+++++..++|+    |.+|+..++..+..|+..|+ +++|..|.
T Consensus       193 ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq  257 (343)
T KOG1196|consen  193 LLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ  257 (343)
T ss_pred             hhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence            99988999999999988789999998777777    99999999999999999996 58887663

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.89  E-value=1.4e-21  Score=159.00  Aligned_cols=168  Identities=55%  Similarity=0.792  Sum_probs=129.7

Q ss_pred             hhhhccccccC----CCCCCCeEEEEEEEeeeChhhhhhhccc----------C-------------CCcccccCCCC--
Q 029543           13 CKIQNILKQNA----AEGSKDTVLLKNLYLSCDPYMQKRMSKL----------D-------------TSLFYSFCPGG--   63 (192)
Q Consensus        13 C~~~~~~g~~~----~g~~~~~vlv~~~~~~v~p~~~~~~~~~----------~-------------~~~~~~~~~g~--   63 (192)
                      |+.+.+...++    |.+.+++|||++.++++||.+.....+.          .             .+....|..|+  
T Consensus        18 ~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V   97 (338)
T cd08295          18 ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLV   97 (338)
T ss_pred             ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEE
Confidence            56666666655    8889999999999999999765432110          0             00000011111  


Q ss_pred             ----------------------------------CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC
Q 029543           64 ----------------------------------VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC  109 (192)
Q Consensus        64 ----------------------------------~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga  109 (192)
                                                        .+++++|||+++.+..++++|++|+|+||+|++|++++|+||.+|+
T Consensus        98 ~~~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~  177 (338)
T cd08295          98 WGFTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC  177 (338)
T ss_pred             EecCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC
Confidence                                              1446689999997778999999999999999999999999999999


Q ss_pred             EEEEEeCCHHHHHHHHHh-cCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          110 HVVGSAGSKEKVDLLKNK-FGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       110 ~Vi~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +|+++++++++.++++ + +|+++++|+.+++++.+.+++.++.++    |++|+..+..++++++++|+ +.+|..+
T Consensus       178 ~Vi~~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~  254 (338)
T cd08295         178 YVVGSAGSDEKVDLLK-NKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMIS  254 (338)
T ss_pred             EEEEEeCCHHHHHHHH-HhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecccc
Confidence            9999999999999999 6 999999997643277777777664455    99999999999999999995 5777654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=1.4e-22  Score=158.68  Aligned_cols=172  Identities=16%  Similarity=0.178  Sum_probs=136.0

Q ss_pred             ccccchhhhhhh--hccccccC-----CCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHH
Q 029543            4 SIRNTSKRLCKI--QNILKQNA-----AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGL   75 (192)
Q Consensus         4 ~~~~g~~~~C~~--~~~~g~~~-----~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l   75 (192)
                      .|+++++++|++  ...-|+..     .|+|++|+++...++.       .+|...+. ...|+     .|++.|+|.+|
T Consensus       107 ~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~-------kIP~~~pl~~aAPl-----LCaGITvYspL  174 (360)
T KOG0023|consen  107 YCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAI-------KIPENLPLASAAPL-----LCAGITVYSPL  174 (360)
T ss_pred             ccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEE-------ECCCCCChhhccch-----hhcceEEeehh
Confidence            388999999994  44444444     4559999999999888       44433111 22334     89999999999


Q ss_pred             HHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCcc
Q 029543           76 YEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD  155 (192)
Q Consensus        76 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~d  155 (192)
                       ...++.||++|.|.| .|++|.+++|+||++|.+|++++++.++.+.+.+.||+|..++..+++++.+.+.+.+++++|
T Consensus       175 -k~~g~~pG~~vgI~G-lGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~  252 (360)
T KOG0023|consen  175 -KRSGLGPGKWVGIVG-LGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGID  252 (360)
T ss_pred             -HHcCCCCCcEEEEec-CcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcce
Confidence             667889999999999 666999999999999999999999985555555489999998887444999999988877777


Q ss_pred             ccc---HHHHHHHHHhhcCCC-eEEEeeCCCCCccccc
Q 029543          156 FVG---IEYCRSLLLVLLFRP-LKIMENDSGSTPIPFA  189 (192)
Q Consensus       156 ~~g---~~~~~~~~~~l~~~G-~v~~G~~~~~~~~~~~  189 (192)
                      ++-   ...++.++..+|++| +|.+|.+..+..++..
T Consensus       253 ~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~  290 (360)
T KOG0023|consen  253 TVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTF  290 (360)
T ss_pred             eeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccch
Confidence            665   358999999999999 5799998877665544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.88  E-value=4e-22  Score=163.13  Aligned_cols=171  Identities=22%  Similarity=0.210  Sum_probs=131.8

Q ss_pred             ccccchhhhhhhhcccccc-----CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH
Q 029543            4 SIRNTSKRLCKIQNILKQN-----AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI   78 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~-----~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~   78 (192)
                      .|+.|.+|+|++..+.|..     .+|+++||+.++.++...      .+|+..     +...+...+|++|+|++....
T Consensus        95 ~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~------~~pd~~-----~~~~aal~epla~~~~~~a~~  163 (350)
T COG1063          95 YCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLA------KLPDGI-----DEEAAALTEPLATAYHGHAER  163 (350)
T ss_pred             hHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCee------cCCCCC-----ChhhhhhcChhhhhhhhhhhc
Confidence            3899999999987666544     689999999999754442      112210     222333367999997774344


Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh-cCCCeeeecCCcccHHHHHHhhccC-Cc-
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNK-FGFDDAFNYKEEPDLDVALKRMFLC-WV-  154 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~i~~~~~~-g~-  154 (192)
                      ....++++|+|+| +|+||+++++++|..|+ +|++++++++|+++++ + .|++.+++..++ +....+.+.+.+ |+ 
T Consensus       164 ~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~-~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D  240 (350)
T COG1063         164 AAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVIVVDRSPERLELAK-EAGGADVVVNPSED-DAGAEILELTGGRGAD  240 (350)
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH-HhCCCeEeecCccc-cHHHHHHHHhCCCCCC
Confidence            5556666999999 99999999999999999 8999999999999999 6 777777777665 677778888877 66 


Q ss_pred             ---ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCC-cccc
Q 029543          155 ---DFVGI-EYCRSLLLVLLFRPL-KIMENDSGST-PIPF  188 (192)
Q Consensus       155 ---d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~-~~~~  188 (192)
                         ||+|. .++++++++++++|. +++|...+.. ++++
T Consensus       241 ~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~  280 (350)
T COG1063         241 VVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPA  280 (350)
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCH
Confidence               89994 589999999999995 5888887664 4444

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.88  E-value=2.3e-21  Score=156.92  Aligned_cols=165  Identities=42%  Similarity=0.556  Sum_probs=127.4

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcc----c-----C-----CCcccccCCCC------------------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSK----L-----D-----TSLFYSFCPGG------------------   63 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~----~-----~-----~~~~~~~~~g~------------------   63 (192)
                      ++....+.|.+.++|||||+.++++||.++.....    .     .     .+....|..|+                  
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~g~~~~~~~~~i~G~~~~g~v~~~~~~~~~GdrV~~~~~~~~~~~~~~~~   98 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRVAAKRLKEGDTMMGQQVARVVESKNVALPKGTIVLASPGWTSHSISDGKD   98 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhcccCcCCCCCcEecceEEEEEEeCCCCCCCCCEEEEecCceeeEEechhh
Confidence            33445677888899999999999999976643210    0     0     00000111111                  


Q ss_pred             --------------------CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 029543           64 --------------------VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL  123 (192)
Q Consensus        64 --------------------~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~  123 (192)
                                          .+++++|||+++.+..++++|++|+|+||+|++|++++|+||..|++|+++++++++.++
T Consensus        99 ~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~  178 (325)
T TIGR02825        99 LEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAY  178 (325)
T ss_pred             eEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence                                145689999998788899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          124 LKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       124 ~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++ ++|++.++|+++.+++.+.++..+++++    |++|++.+..++++++++|+ +.+|..+
T Consensus       179 ~~-~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~  240 (325)
T TIGR02825       179 LK-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS  240 (325)
T ss_pred             HH-HcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchh
Confidence            99 9999999998763256666666554455    99999889999999999995 5777643

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.88  E-value=4.7e-21  Score=156.77  Aligned_cols=118  Identities=62%  Similarity=0.880  Sum_probs=102.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++.+..++++|++|+|+|++|++|++++|+||++|++|+++++++++.+.+++++|++.++|+++++++.+
T Consensus       140 ~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~  219 (348)
T PLN03154        140 GMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDA  219 (348)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHH
Confidence            56788999999777889999999999988999999999999999999999999999999874699999999875326777


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .+++.+++|+    |++|+..+..++++++++|+ +.+|..++
T Consensus       220 ~i~~~~~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~  262 (348)
T PLN03154        220 ALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSL  262 (348)
T ss_pred             HHHHHCCCCcEEEEECCCHHHHHHHHHHhccCCEEEEECcccc
Confidence            7877765455    99999999999999999995 67887654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.87  E-value=8.1e-22  Score=160.86  Aligned_cols=166  Identities=16%  Similarity=0.166  Sum_probs=127.0

Q ss_pred             cccchhhhhhhhccccc-----cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHh
Q 029543            5 IRNTSKRLCKIQNILKQ-----NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEIC   79 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~-----~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~   79 (192)
                      |+++++|+|.+....|.     ..+|+++||++++...+..       +|+..+     +..+...++++|+|+++ +..
T Consensus        99 c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~-------~P~~l~-----~~~aa~~~~~~~a~~al-~~~  165 (343)
T PRK09880         99 CLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIP-------YPEKAD-----EKVMAFAEPLAVAIHAA-HQA  165 (343)
T ss_pred             hcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEE-------CCCCCC-----HHHHHhhcHHHHHHHHH-Hhc
Confidence            67899999999877664     3579999999999876652       332211     11111255889999999 455


Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----  154 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----  154 (192)
                      ...+|++|+|+| +|++|++++|+||++|+ +|++++++++|++.++ ++|+++++|++++ ++.+..+ ..+ ++    
T Consensus       166 ~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~-~~~~~~~-~~g-~~D~vi  240 (343)
T PRK09880        166 GDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMGADKLVNPQND-DLDHYKA-EKG-YFDVSF  240 (343)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcCCcEEecCCcc-cHHHHhc-cCC-CCCEEE
Confidence            667899999999 69999999999999999 7999999999999999 9999999998876 6554332 222 33    


Q ss_pred             ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          155 DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       155 d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      |++|+ ..++.++++++++|+ +.+|......++++
T Consensus       241 d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  276 (343)
T PRK09880        241 EVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPM  276 (343)
T ss_pred             ECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCH
Confidence            99996 588999999999995 67887554445544

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.87  E-value=7.6e-21  Score=150.34  Aligned_cols=120  Identities=26%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .|..+|.+.++.+.+++++|++|.|.| .|++|+.++|-|+..|+ +||+++.+++|+++++ +||+++++|.++..++.
T Consensus       167 GCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~-~fGAT~~vn~~~~~~vv  244 (366)
T COG1062         167 GCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK-KFGATHFVNPKEVDDVV  244 (366)
T ss_pred             eeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH-hcCCceeecchhhhhHH
Confidence            788999999988999999999999999 99999999999999999 9999999999999999 99999999998763589


Q ss_pred             HHHHhhccCCc----ccccH-HHHHHHHHhhcCCC-eEEEeeCCCCCcc
Q 029543          144 VALKRMFLCWV----DFVGI-EYCRSLLLVLLFRP-LKIMENDSGSTPI  186 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G-~v~~G~~~~~~~~  186 (192)
                      +.+.++|++|+    |++|+ +.+++++++++++| .+++|.......+
T Consensus       245 ~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i  293 (366)
T COG1062         245 EAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEI  293 (366)
T ss_pred             HHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCcee
Confidence            99999998665    89995 69999999999999 5788887644333

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.86  E-value=4.5e-20  Score=149.15  Aligned_cols=165  Identities=39%  Similarity=0.580  Sum_probs=131.1

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcc---------cC--------------C-------C---------
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSK---------LD--------------T-------S---------   54 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~---------~~--------------~-------~---------   54 (192)
                      ..++....+.|.+.+++|+|++.++++||.++.....         ..              +       .         
T Consensus        19 ~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~~~~~p~v~G~e~~G~V~~~~~~~~~Gd~V~~~~~~~~~~~~~~   98 (329)
T cd08294          19 SDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKRLNEGDTMIGTQVAKVIESKNSKFPVGTIVVASFGWRTHTVSDG   98 (329)
T ss_pred             cceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccccCCCCCcEecceEEEEEecCCCCCCCCCEEEeeCCeeeEEEECC
Confidence            3456666788889999999999999999965432110         00              0       0         


Q ss_pred             ----cccccCC------------CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           55 ----LFYSFCP------------GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        55 ----~~~~~~~------------g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                          ...+++.            +..+++++|||+++.+..++++|++|+|+||+|++|++++|+|+.+|++|+++++++
T Consensus        99 ~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~  178 (329)
T cd08294          99 KDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD  178 (329)
T ss_pred             ccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence                0000111            112567899999997788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       119 ~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ++.++++ ++|+++++|++++ ++.+.+++.++.++    |++|++.+..++++++++|+ +.+|..
T Consensus       179 ~~~~~l~-~~Ga~~vi~~~~~-~~~~~v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~  243 (329)
T cd08294         179 DKVAWLK-ELGFDAVFNYKTV-SLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSI  243 (329)
T ss_pred             HHHHHHH-HcCCCEEEeCCCc-cHHHHHHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcch
Confidence            9999999 8999999999887 88888887765455    99999999999999999995 567753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.86  E-value=5e-20  Score=150.02  Aligned_cols=115  Identities=36%  Similarity=0.522  Sum_probs=99.9

Q ss_pred             chhHHHHHHHHHHHhCCCCC--CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLYEICSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g--~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      +++++|||+++.+.+++++|  ++|+|+||+|++|++++|+||++|+ +|+++++++++.+++++++|++++++++++ +
T Consensus       134 ~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~-~  212 (345)
T cd08293         134 GLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTD-N  212 (345)
T ss_pred             CcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCC-C
Confidence            34688999998777778877  9999999999999999999999999 899999999999999834999999999877 8


Q ss_pred             HHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          142 LDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       142 ~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      +.+.+++.++.|+    |++|+..+..++++++++|+ +.+|..
T Consensus       213 ~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  256 (345)
T cd08293         213 VAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQI  256 (345)
T ss_pred             HHHHHHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEeee
Confidence            8888888765455    89998888999999999995 577753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.86  E-value=1.3e-20  Score=149.84  Aligned_cols=160  Identities=19%  Similarity=0.124  Sum_probs=121.9

Q ss_pred             ccccchhhhhhhhcccccc-------CCCCCCCeEEEEEE-EeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHH
Q 029543            4 SIRNTSKRLCKIQNILKQN-------AAEGSKDTVLLKNL-YLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAG   74 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~-------~~g~~~~~vlv~~~-~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~   74 (192)
                      .|+.|++|+|.+....|..       .+|+++||+.++.. ++..       +|+.... ...++     .+++.|+|++
T Consensus        45 ~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~~~~~~~~-------lP~~~~~~~aa~l-----~~~~~ta~~a  112 (280)
T TIGR03366        45 RCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVP-------VPDDLPDAVAAPA-----GCATATVMAA  112 (280)
T ss_pred             hhhCcCcccCCChhhcCcccccCCccccccceeeEEecCCCcEEE-------CCCCCCHHHhhHh-----hhHHHHHHHH
Confidence            3788999999998776643       57999999999975 4442       2221100 11112     5578899999


Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-  152 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-  152 (192)
                      + +.....+|++|+|+| +|++|++++|+||++|++ |++++++++|++.++ ++|++.++++.   +..+.+++.+.+ 
T Consensus       113 l-~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~---~~~~~~~~~~~~~  186 (280)
T TIGR03366       113 L-EAAGDLKGRRVLVVG-AGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL-SFGATALAEPE---VLAERQGGLQNGR  186 (280)
T ss_pred             H-HhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCcEecCch---hhHHHHHHHhCCC
Confidence            9 455667999999999 699999999999999995 999999999999999 99999998864   234455556544 


Q ss_pred             Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          153 WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       153 g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++    |++|. ..++.++++++++|+ +.+|...
T Consensus       187 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~  221 (280)
T TIGR03366       187 GVDVALEFSGATAAVRACLESLDVGGTAVLAGSVF  221 (280)
T ss_pred             CCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCC
Confidence            54    89984 578999999999995 5788654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.85  E-value=1e-20  Score=154.76  Aligned_cols=175  Identities=20%  Similarity=0.203  Sum_probs=131.5

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCccccc-CCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSF-CPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~-~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|+.|+|.+....|...+|+++||+.++...+..-|..... +..     .++ ......+++.|+|+++ ...+++
T Consensus        93 ~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~-~~~-----~~~~~~a~~~~~~~ta~~a~-~~~~~~  165 (349)
T TIGR03201        93 LCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLA-AAG-----LPLEHVSVVADAVTTPYQAA-VQAGLK  165 (349)
T ss_pred             hhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCccccc-ccC-----CCHHHhhhhcchHHHHHHHH-HhcCCC
Confidence            36788899999887778777899999999997655522210000 000     001 0111156889999999 457899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCc--ccHHHHHHhhccC-C------
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEE--PDLDVALKRMFLC-W------  153 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~--~~~~~~i~~~~~~-g------  153 (192)
                      +|++|+|+|+ |++|++++|+|+++|++|++++++++|+++++ ++|+++++|+.+.  +++.+.+++.+++ |      
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d  243 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK-GFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW  243 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence            9999999996 99999999999999999999999999999998 9999999987653  1466777777654 3      


Q ss_pred             -c-ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCccc
Q 029543          154 -V-DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIP  187 (192)
Q Consensus       154 -~-d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~  187 (192)
                       + |++|+ ..++.++++++++|+ +.+|...++.+++
T Consensus       244 ~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  281 (349)
T TIGR03201       244 KIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYR  281 (349)
T ss_pred             EEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccC
Confidence             2 78885 477889999999995 5788766544444

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.85  E-value=3.7e-20  Score=152.66  Aligned_cols=164  Identities=13%  Similarity=0.056  Sum_probs=128.8

Q ss_pred             ccccchhhhhhhhccc---ccc------------------CCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCC
Q 029543            4 SIRNTSKRLCKIQNIL---KQN------------------AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCP   61 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~---g~~------------------~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~   61 (192)
                      .|+.|++|+|.+....   |..                  .+|+++||+.++...+..-       |+.... ....+  
T Consensus       102 ~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~l-------P~~l~~~~aa~~--  172 (371)
T cd08281         102 PCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKI-------DKDVPLEIAALF--  172 (371)
T ss_pred             cccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEEC-------CCCCChHHhhhh--
Confidence            4789999999875432   211                  1368999999998776632       322110 01111  


Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP  140 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~  140 (192)
                         .++++|||+++.+..++++|++|+|.| +|++|++++|+||++|+ +|++++++++|++.++ ++|+++++++.++ 
T Consensus       173 ---~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~~~-  246 (371)
T cd08281         173 ---GCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR-ELGATATVNAGDP-  246 (371)
T ss_pred             ---cchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH-HcCCceEeCCCch-
Confidence               457899999987778899999999999 79999999999999999 7999999999999999 9999999998877 


Q ss_pred             cHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          141 DLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       141 ~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++.+.+++.+++++    |++|. ..++.++++++++|+ +.+|..++
T Consensus       247 ~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~  294 (371)
T cd08281         247 NAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDP  294 (371)
T ss_pred             hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCC
Confidence            88888888765444    89984 689999999999995 57887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=99.84  E-value=5.6e-20  Score=152.12  Aligned_cols=165  Identities=17%  Similarity=0.180  Sum_probs=127.2

Q ss_pred             cccchhhhhhhhccccc------------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-ccccc
Q 029543            5 IRNTSKRLCKIQNILKQ------------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSF   59 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~------------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~   59 (192)
                      |+++..|+|++....+.                        ..+|+++||++++...+.       .+|+.... .... 
T Consensus       107 c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~-------~iP~~~~~~~aa~-  178 (381)
T PLN02740        107 CKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV-------KIDPNAPLKKMSL-  178 (381)
T ss_pred             hcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE-------ECCCCCCHHHhhh-
Confidence            67888999998653221                        136899999999877655       22222100 0111 


Q ss_pred             CCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 029543           60 CPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE  138 (192)
Q Consensus        60 ~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~  138 (192)
                          ..+++.|||+++.+..++++|++|+|+| +|++|++++|+||.+|+ +|++++++++|++.++ ++|++.++|+.+
T Consensus       179 ----l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~~  252 (381)
T PLN02740        179 ----LSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EMGITDFINPKD  252 (381)
T ss_pred             ----hcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-HcCCcEEEeccc
Confidence                1557899999886778999999999999 69999999999999999 7999999999999999 999999999775


Q ss_pred             c-ccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCC
Q 029543          139 E-PDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGS  183 (192)
Q Consensus       139 ~-~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~  183 (192)
                      . .++.+.+++.+.+++    |++|+ ..++.++++++++ |+ +++|...+.
T Consensus       253 ~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~  305 (381)
T PLN02740        253 SDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP  305 (381)
T ss_pred             ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCC
Confidence            3 147777877765444    99995 6899999999997 84 688876543

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.84  E-value=8.5e-20  Score=150.38  Aligned_cols=164  Identities=15%  Similarity=0.109  Sum_probs=125.5

Q ss_pred             ccccchhhhhhhhcc---cccc------------------CCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCC
Q 029543            4 SIRNTSKRLCKIQNI---LKQN------------------AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCP   61 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~---~g~~------------------~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~   61 (192)
                      .|++|+.|+|.+...   .|..                  .+|+++||+.++...+..       +|+..+. ....+  
T Consensus        96 ~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~-------lP~~l~~~~aa~l--  166 (368)
T TIGR02818        96 FCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAK-------INPAAPLEEVCLL--  166 (368)
T ss_pred             hhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEE-------CCCCCCHHHhhhh--
Confidence            378889999987532   1111                  247899999999877663       3322100 01111  


Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc-
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE-  139 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~-  139 (192)
                         .+++.|+|+++.+..++++|++|+|+| +|++|++++|+||++|+ +|++++++++|++.++ ++|++.++|+++. 
T Consensus       167 ---~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~~~~  241 (368)
T TIGR02818       167 ---GCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRIIAIDINPAKFELAK-KLGATDCVNPNDYD  241 (368)
T ss_pred             ---cchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCeEEcccccc
Confidence               558899999987778899999999998 69999999999999999 8999999999999998 9999999987642 


Q ss_pred             ccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCC
Q 029543          140 PDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDS  181 (192)
Q Consensus       140 ~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~  181 (192)
                      .++.+.+++.+.+++    |++|+ ..+..++++++++ |+ +.+|...
T Consensus       242 ~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~  290 (368)
T TIGR02818       242 KPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAG  290 (368)
T ss_pred             hhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccC
Confidence            156777777765444    99995 6889999999986 85 5788754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.84  E-value=5e-20  Score=149.85  Aligned_cols=162  Identities=19%  Similarity=0.154  Sum_probs=127.7

Q ss_pred             cccchhhhhhhhcc-ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~-~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |+.|..++|.+.+. .|...+|++++|+.++...+..       +|+.....    .....+++++|||+++ +..++.+
T Consensus        96 c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~-------~P~~~~~~----~aa~l~~~~~ta~~~l-~~~~~~~  163 (339)
T cd08239          96 CRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIP-------LPDDLSFA----DGALLLCGIGTAYHAL-RRVGVSG  163 (339)
T ss_pred             hhCcCcccCcCcccccccCCCCcceeEEEechHHeEE-------CCCCCCHH----HhhhhcchHHHHHHHH-HhcCCCC
Confidence            67888999988764 6777789999999999876653       22221000    0011156889999999 5678899


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFV  157 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~  157 (192)
                      |++|+|+| +|++|++++|+||++|++ |++++++++|++.++ ++|++.++|++++ + .+.+.+.+.+ ++    |++
T Consensus       164 g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~-~~ga~~~i~~~~~-~-~~~~~~~~~~~~~d~vid~~  239 (339)
T cd08239         164 RDTVLVVG-AGPVGLGALMLARALGAEDVIGVDPSPERLELAK-ALGADFVINSGQD-D-VQEIRELTSGAGADVAIECS  239 (339)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEcCCcc-h-HHHHHHHhCCCCCCEEEECC
Confidence            99999998 699999999999999997 999999999999998 9999999998876 6 6667766654 55    899


Q ss_pred             cHH-HHHHHHHhhcCCCe-EEEeeCCC
Q 029543          158 GIE-YCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       158 g~~-~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      |+. .++.++++++++|+ +.+|....
T Consensus       240 g~~~~~~~~~~~l~~~G~~v~~g~~~~  266 (339)
T cd08239         240 GNTAARRLALEAVRPWGRLVLVGEGGE  266 (339)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEEcCCCC
Confidence            965 56889999999995 57887543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.83  E-value=2e-19  Score=146.32  Aligned_cols=114  Identities=33%  Similarity=0.368  Sum_probs=100.4

Q ss_pred             chhHHHHHHHHHHHh------CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 029543           65 IMPSVTAFAGLYEIC------SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKE  138 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~------~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~  138 (192)
                      ++++.|||.++.+..      +.++|++|||+||+|++|++++|+|++.++..++++++++++++++ ++|+|+++||++
T Consensus       133 p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k-~lGAd~vvdy~~  211 (347)
T KOG1198|consen  133 PLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVK-KLGADEVVDYKD  211 (347)
T ss_pred             chHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHH-HcCCcEeecCCC
Confidence            889999999998888      8999999999999999999999999999976666666899999999 999999999999


Q ss_pred             cccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCC-eEEEeeC
Q 029543          139 EPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRP-LKIMEND  180 (192)
Q Consensus       139 ~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G-~v~~G~~  180 (192)
                      + ++.+.+++.+.+++    ||+|+..+...+.++..+| ...++..
T Consensus       212 ~-~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~  257 (347)
T KOG1198|consen  212 E-NVVELIKKYTGKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLV  257 (347)
T ss_pred             H-HHHHHHHhhcCCCccEEEECCCCCccccchhhhccCCceEEEEec
Confidence            8 99999999874366    9999988888899988887 3344443

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=1.9e-19  Score=140.78  Aligned_cols=121  Identities=21%  Similarity=0.198  Sum_probs=108.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc-cH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP-DL  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~  142 (192)
                      .|...|+|.|.-+.+++++|++|.|+| .|++|+.++|-||+.|| +||++|.+++|.+.++ ++|+++.||+.+-. .+
T Consensus       174 gCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak-~fGaTe~iNp~d~~~~i  251 (375)
T KOG0022|consen  174 GCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK-EFGATEFINPKDLKKPI  251 (375)
T ss_pred             eccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH-hcCcceecChhhccccH
Confidence            788899999988999999999999999 99999999999999999 9999999999999999 99999999987422 58


Q ss_pred             HHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-C-eEEEeeCCCCCccc
Q 029543          143 DVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-P-LKIMENDSGSTPIP  187 (192)
Q Consensus       143 ~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G-~v~~G~~~~~~~~~  187 (192)
                      .+.++++|++|+    ||+|+ +++++++.+.+.+ | .|++|......+++
T Consensus       252 ~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~  303 (375)
T KOG0022|consen  252 QEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEIS  303 (375)
T ss_pred             HHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccc
Confidence            889999998877    89995 6999999999999 8 58999876655443

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.83  E-value=1.9e-19  Score=147.76  Aligned_cols=164  Identities=14%  Similarity=0.073  Sum_probs=126.0

Q ss_pred             cccchhhhhhhhccc--------cc-----cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHH
Q 029543            5 IRNTSKRLCKIQNIL--------KQ-----NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTA   71 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~--------g~-----~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta   71 (192)
                      |++|+.++|......        |.     ..+|+++||+.++...+..-|...   +..   ....+     .++++|+
T Consensus        96 c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~---~~~---~aa~l-----~~~~~ta  164 (358)
T TIGR03451        96 CKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAA---DPA---AAGLL-----GCGVMAG  164 (358)
T ss_pred             HhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCC---Chh---Hhhhh-----cccchhh
Confidence            567788888753211        11     125899999999987666322211   000   01111     4577888


Q ss_pred             HHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhc
Q 029543           72 FAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        72 ~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      |+++.+..++++|++|+|+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+.++ ++.+.+++.+
T Consensus       165 ~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~-~~Ga~~~i~~~~~-~~~~~i~~~~  241 (358)
T TIGR03451       165 LGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR-EFGATHTVNSSGT-DPVEAIRALT  241 (358)
T ss_pred             HHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEEcCCCc-CHHHHHHHHh
Confidence            98876778899999999998 69999999999999999 6999999999999999 9999999998876 8888888877


Q ss_pred             cC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          151 LC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       151 ~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++ ++    |++|+ ..++.++++++++|+ +.+|...+
T Consensus       242 ~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~  280 (358)
T TIGR03451       242 GGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTP  280 (358)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCC
Confidence            64 55    99995 689999999999995 57887654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.83  E-value=1.5e-19  Score=147.55  Aligned_cols=165  Identities=16%  Similarity=0.210  Sum_probs=126.8

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      |+.|.+++|.+....|...+|++++|+.++...+.       .+|...     ++..+....+++++++++ +...+.+|
T Consensus        95 c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~-------~lP~~~-----s~~~aa~~~~~~~~~~~~-~~~~~~~g  161 (347)
T PRK10309         95 CLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLF-------ALPTDM-----PIEDGAFIEPITVGLHAF-HLAQGCEG  161 (347)
T ss_pred             hhCcCcccCCCcceeccCCCCccceeEEeehHHeE-------ECcCCC-----CHHHhhhhhHHHHHHHHH-HhcCCCCC
Confidence            67888999998877888889999999999986655       223221     111111123567788887 66788899


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc-----ccc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV-----DFV  157 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~-----d~~  157 (192)
                      ++|+|+| +|++|++++|+|+++|++ |+++++++++++.++ ++|+++++|+++. + .+.+.+.+.+ ++     |++
T Consensus       162 ~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~~-~-~~~~~~~~~~~~~d~~v~d~~  237 (347)
T PRK10309        162 KNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK-SLGAMQTFNSREM-S-APQIQSVLRELRFDQLILETA  237 (347)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCceEecCccc-C-HHHHHHHhcCCCCCeEEEECC
Confidence            9999998 799999999999999995 889999999999998 9999999998765 5 4455555543 33     899


Q ss_pred             cH-HHHHHHHHhhcCCCe-EEEeeCCCCCcc
Q 029543          158 GI-EYCRSLLLVLLFRPL-KIMENDSGSTPI  186 (192)
Q Consensus       158 g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~  186 (192)
                      |+ ..+..++++++++|+ +++|...++.++
T Consensus       238 G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~  268 (347)
T PRK10309        238 GVPQTVELAIEIAGPRAQLALVGTLHHDLHL  268 (347)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEEccCCCCccc
Confidence            95 588999999999995 578876554333

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.82  E-value=2.5e-19  Score=148.80  Aligned_cols=165  Identities=19%  Similarity=0.189  Sum_probs=121.0

Q ss_pred             ccccchhhhhhhhc------cccc----cCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHHH
Q 029543            4 SIRNTSKRLCKIQN------ILKQ----NAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTA   71 (192)
Q Consensus         4 ~~~~g~~~~C~~~~------~~g~----~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta   71 (192)
                      .|++|++|+|.+..      .+|+    ..+|+++||++++..  .+.       .+|+...............++++|+
T Consensus       102 ~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~-------~vP~~~~~~~~~~~~a~l~~~~~ta  174 (393)
T TIGR02819       102 NCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLL-------KFPDRDQALEKIRDLTMLSDIFPTG  174 (393)
T ss_pred             HHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceE-------ECCCcccccccccceeeeccHHHHH
Confidence            37899999999753      2343    247999999999963  233       2222111100001112226689999


Q ss_pred             HHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecC-CcccHHHHHHhh
Q 029543           72 FAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYK-EEPDLDVALKRM  149 (192)
Q Consensus        72 ~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~-~~~~~~~~i~~~  149 (192)
                      |+++ +..++.+|++|+|.| +|++|++++|+|+++|++ |++++++++|++.++ ++|++. +++. +. ++.+.+.+.
T Consensus       175 ~~a~-~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~-~~Ga~~-v~~~~~~-~~~~~v~~~  249 (393)
T TIGR02819       175 YHGA-VTAGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR-SFGCET-VDLSKDA-TLPEQIEQI  249 (393)
T ss_pred             HHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH-HcCCeE-EecCCcc-cHHHHHHHH
Confidence            9999 567899999999977 899999999999999995 566678889999999 999975 5543 34 677778777


Q ss_pred             ccC-Cc----ccccHH---------------HHHHHHHhhcCCCe-EEEeeC
Q 029543          150 FLC-WV----DFVGIE---------------YCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       150 ~~~-g~----d~~g~~---------------~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      +.+ ++    |++|.+               .+++++++++++|+ +++|..
T Consensus       250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            654 55    899953               79999999999995 588886

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.82  E-value=1.4e-19  Score=148.70  Aligned_cols=167  Identities=14%  Similarity=0.152  Sum_probs=121.9

Q ss_pred             ccccchhhhhhhhccc-------cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHH
Q 029543            4 SIRNTSKRLCKIQNIL-------KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGL   75 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~-------g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l   75 (192)
                      .|++|.+|+|++....       |...+|+++||+.++...+..       +|+.... ...++     .+++.|+|+++
T Consensus       108 ~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~-------lP~~ls~~~aa~l-----~~~~~ta~~al  175 (360)
T PLN02586        108 SCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLR-------FPDNLPLDAGAPL-----LCAGITVYSPM  175 (360)
T ss_pred             cccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeee-------CCCCCCHHHhhhh-----hcchHHHHHHH
Confidence            3789999999986543       445689999999999876652       2322100 11112     56788999998


Q ss_pred             HHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHhcCCCeeeecCCcccHHHHHHhhccC-C
Q 029543           76 YEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD-LLKNKFGFDDAFNYKEEPDLDVALKRMFLC-W  153 (192)
Q Consensus        76 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g  153 (192)
                      .+...+++|++|+|.| +|++|++++|+||++|++|++++.+++++. .++ ++|+++++|+.+. +   .+++.+++ .
T Consensus       176 ~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~-~~Ga~~vi~~~~~-~---~~~~~~~~~D  249 (360)
T PLN02586        176 KYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN-RLGADSFLVSTDP-E---KMKAAIGTMD  249 (360)
T ss_pred             HHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH-hCCCcEEEcCCCH-H---HHHhhcCCCC
Confidence            6666678999999988 799999999999999999888887776654 556 8999999987643 2   34444432 2


Q ss_pred             c--ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          154 V--DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       154 ~--d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      +  |++|. ..++.++++++++|+ +.+|...++.++++
T Consensus       250 ~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~  288 (360)
T PLN02586        250 YIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPI  288 (360)
T ss_pred             EEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCH
Confidence            2  99996 588999999999995 57887655445554

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.82  E-value=1.6e-19  Score=146.63  Aligned_cols=156  Identities=13%  Similarity=0.047  Sum_probs=120.8

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|+.|+.++|.+....|...+|+++||+.++...+..       +|+.... ...++     ++++.|||+++ +..+++
T Consensus        98 ~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~-------lP~~~~~~~aa~l-----~~~~~ta~~~~-~~~~~~  164 (329)
T TIGR02822        98 YCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYR-------LPTGYDDVELAPL-----LCAGIIGYRAL-LRASLP  164 (329)
T ss_pred             HHhCcCcccCCCcccCCcccCCcceeEEEeccccEEE-------CCCCCCHHHhHHH-----hccchHHHHHH-HhcCCC
Confidence            3678899999998888887889999999999887663       2322100 11112     56889999999 567899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cccccc-HH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WVDFVG-IE  160 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~d~~g-~~  160 (192)
                      +|++|+|+| +|++|++++|+||.+|++|++++++++|++.++ ++|+++++|+.+. +.     + .-+ -+++.+ ++
T Consensus       165 ~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~-~~Ga~~vi~~~~~-~~-----~-~~d~~i~~~~~~~  235 (329)
T TIGR02822       165 PGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTRGAAARRLAL-ALGAASAGGAYDT-PP-----E-PLDAAILFAPAGG  235 (329)
T ss_pred             CCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HhCCceecccccc-Cc-----c-cceEEEECCCcHH
Confidence            999999999 599999999999999999999999999999999 9999999986432 10     0 001 125554 56


Q ss_pred             HHHHHHHhhcCCCe-EEEeeCC
Q 029543          161 YCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       161 ~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+..++++++++|+ +++|...
T Consensus       236 ~~~~~~~~l~~~G~~v~~G~~~  257 (329)
T TIGR02822       236 LVPPALEALDRGGVLAVAGIHL  257 (329)
T ss_pred             HHHHHHHhhCCCcEEEEEeccC
Confidence            89999999999995 5778753

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.81  E-value=6e-19  Score=145.30  Aligned_cols=164  Identities=20%  Similarity=0.188  Sum_probs=125.9

Q ss_pred             ccccchhhhhhhhccc---cc------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCC
Q 029543            4 SIRNTSKRLCKIQNIL---KQ------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCP   61 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~---g~------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~   61 (192)
                      .|++++.|+|.+....   |.                  ..+|+++||+.++..++..       +|+.... ....+  
T Consensus        97 ~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~-------iP~~l~~~~aa~l--  167 (368)
T cd08300          97 FCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAK-------INPEAPLDKVCLL--  167 (368)
T ss_pred             hhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEe-------CCCCCChhhhhhh--
Confidence            3778899999875321   11                  1246899999999877663       2221100 01111  


Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP  140 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~  140 (192)
                         .+++.|+|+++.+..++++|++|+|+| +|++|++++|+||++|+ +|++++++++|++.++ ++|+++++|+++.+
T Consensus       168 ---~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~-~lGa~~~i~~~~~~  242 (368)
T cd08300         168 ---GCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK-KFGATDCVNPKDHD  242 (368)
T ss_pred             ---ccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCCEEEcccccc
Confidence               457899999987778899999999998 69999999999999999 7999999999999998 99999999987531


Q ss_pred             -cHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCC
Q 029543          141 -DLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDS  181 (192)
Q Consensus       141 -~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~  181 (192)
                       ++.+.+++.+++++    |++|+ ..+..++++++++ |+ +.+|...
T Consensus       243 ~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~  291 (368)
T cd08300         243 KPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAA  291 (368)
T ss_pred             hHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCC
Confidence             47778887776555    89995 5899999999987 85 5788764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02827 Alcohol dehydrogenase-like

Probab=99.81  E-value=8.7e-19  Score=144.91  Aligned_cols=169  Identities=18%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             ccccchhhhhhhhccc----------------c-----ccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCC
Q 029543            4 SIRNTSKRLCKIQNIL----------------K-----QNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCP   61 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~----------------g-----~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~   61 (192)
                      .|++++++.|++....                |     +..+|+++||+.++...+.       .+|+.... ....+  
T Consensus       104 ~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~-------~iP~~l~~~~aa~l--  174 (378)
T PLN02827        104 HCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV-------KVDPLAPLHKICLL--  174 (378)
T ss_pred             hhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheE-------ECCCCCCHHHhhhh--
Confidence            3788999999875321                1     0124899999999987665       22322110 01111  


Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc-
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE-  139 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~-  139 (192)
                         .++++++|+++.+..++.+|++|+|+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++++++. 
T Consensus       175 ---~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~-~lGa~~~i~~~~~~  249 (378)
T PLN02827        175 ---SCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK-TFGVTDFINPNDLS  249 (378)
T ss_pred             ---cchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCcEEEcccccc
Confidence               457788888776667899999999999 69999999999999999 6888898999999999 9999999988751 


Q ss_pred             ccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCCCcc
Q 029543          140 PDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGSTPI  186 (192)
Q Consensus       140 ~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~~~~  186 (192)
                      +++.+.+++.+.+++    |++|. ..+..+++.++++ |+ +.+|...++.++
T Consensus       250 ~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~  303 (378)
T PLN02827        250 EPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEV  303 (378)
T ss_pred             hHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccc
Confidence            167777877765444    89996 4789999999998 85 578876544333

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.80  E-value=6.9e-19  Score=145.37  Aligned_cols=167  Identities=15%  Similarity=0.167  Sum_probs=121.1

Q ss_pred             ccccchhhhhhhhccc-------cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHH
Q 029543            4 SIRNTSKRLCKIQNIL-------KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGL   75 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~-------g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l   75 (192)
                      .|++|++|+|++....       |...+|+++||++++...+..       +|+.... ...++     .+++.|+|+++
T Consensus       102 ~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~-------lP~~ls~~~aa~l-----~~~~~ta~~al  169 (375)
T PLN02178        102 SCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLS-------IPDGLPSDSGAPL-----LCAGITVYSPM  169 (375)
T ss_pred             hHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEE-------CCCCCCHHHcchh-----hccchHHHHHH
Confidence            3789999999986532       444579999999999876653       3322110 01112     56788999998


Q ss_pred             HHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHhcCCCeeeecCCcccHHHHHHhhccC-
Q 029543           76 YEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK-VDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-  152 (192)
Q Consensus        76 ~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-  152 (192)
                      .+... .++|++|+|.| +|++|++++|+||++|++|+++++++++ .+.++ ++|+++++++.+.    +.+++.+++ 
T Consensus       170 ~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~-~lGa~~~i~~~~~----~~v~~~~~~~  243 (375)
T PLN02178        170 KYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID-RLGADSFLVTTDS----QKMKEAVGTM  243 (375)
T ss_pred             HHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH-hCCCcEEEcCcCH----HHHHHhhCCC
Confidence            54332 35899999999 6999999999999999999999877554 67777 9999999987542    234444432 


Q ss_pred             Cc--ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          153 WV--DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       153 g~--d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      .+  |++|.. .+..++++++++|+ +.+|...++.++++
T Consensus       244 D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~  283 (375)
T PLN02178        244 DFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPI  283 (375)
T ss_pred             cEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCH
Confidence            22  999965 78999999999995 57887655444544

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.80  E-value=2.7e-18  Score=141.40  Aligned_cols=166  Identities=16%  Similarity=0.160  Sum_probs=126.1

Q ss_pred             ccccchhhhhhhhccc---cc-------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccC
Q 029543            4 SIRNTSKRLCKIQNIL---KQ-------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFC   60 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~---g~-------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~   60 (192)
                      .|+.++.|.|.+....   |.                   ..+|+++||++++...+..-|       +.... ....+ 
T Consensus        97 ~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP-------~~~~~~~aa~~-  168 (369)
T cd08301          97 HCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKIN-------PEAPLDKVCLL-  168 (369)
T ss_pred             hhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECC-------CCCCHHHhhhh-
Confidence            4778889999886432   10                   134789999999987766322       21100 01111 


Q ss_pred             CCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc
Q 029543           61 PGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE  139 (192)
Q Consensus        61 ~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~  139 (192)
                          .+++.|+|+++.+..++++|++|+|+| +|++|++++|+||++|+ +|++++++++|++.++ ++|++.++++.+.
T Consensus       169 ----~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~~~  242 (369)
T cd08301         169 ----SCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK-KFGVTEFVNPKDH  242 (369)
T ss_pred             ----cchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEEccccc
Confidence                557889999887778899999999998 69999999999999999 8999999999999999 9999999987652


Q ss_pred             -ccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCC
Q 029543          140 -PDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGS  183 (192)
Q Consensus       140 -~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~  183 (192)
                       +++.+.+++.+++++    |++|+ ..+..++++++++ |+ +.+|....+
T Consensus       243 ~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~  294 (369)
T cd08301         243 DKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKD  294 (369)
T ss_pred             chhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCC
Confidence             157777777665444    89985 5788999999996 85 578876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.79  E-value=1.7e-18  Score=141.57  Aligned_cols=168  Identities=15%  Similarity=0.152  Sum_probs=130.7

Q ss_pred             cccchhhhhhhhcccccc-CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQN-AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~-~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |+.++.++|.+....|+. .+|++++|+.++...+..       +|+..     ++..+....++.|||+++ ...++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-------lP~~~-----~~~~aa~~~~~~ta~~~l-~~~~~~~  172 (351)
T cd08233         106 CKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHK-------LPDNV-----PLEEAALVEPLAVAWHAV-RRSGFKP  172 (351)
T ss_pred             HhCcCcccCCCCceeccCCCCCceeeEEEechHHeEE-------CcCCC-----CHHHhhhccHHHHHHHHH-HhcCCCC
Confidence            456777888876655543 368999999998876552       22221     111111134778999999 7788999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFV  157 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~  157 (192)
                      |++|+|+| +|++|++++|+|+.+|+ +|+++++++++.++++ ++|++.++|+++. ++.+.+++.+++ ++    |++
T Consensus       173 g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~-~~ga~~~i~~~~~-~~~~~l~~~~~~~~~d~vid~~  249 (351)
T cd08233         173 GDTALVLG-AGPIGLLTILALKAAGASKIIVSEPSEARRELAE-ELGATIVLDPTEV-DVVAEVRKLTGGGGVDVSFDCA  249 (351)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEECCCcc-CHHHHHHHHhCCCCCCEEEECC
Confidence            99999998 69999999999999999 8999999999999998 8999999998877 888888887765 45    898


Q ss_pred             c-HHHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          158 G-IEYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       158 g-~~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      | ...++.++++++++|+ +.+|..+.+.++++
T Consensus       250 g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  282 (351)
T cd08233         250 GVQATLDTAIDALRPRGTAVNVAIWEKPISFNP  282 (351)
T ss_pred             CCHHHHHHHHHhccCCCEEEEEccCCCCCccCH
Confidence            8 5688999999999995 67887664444443

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.79  E-value=3.3e-18  Score=132.41  Aligned_cols=173  Identities=21%  Similarity=0.224  Sum_probs=130.4

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC--------
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV--------   64 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~--------   64 (192)
                      +..+...+.+|.....+|+|+..++++||.+.+.+.+.+                     ++....|.+|+.        
T Consensus        33 kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~l  112 (354)
T KOG0025|consen   33 KVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANL  112 (354)
T ss_pred             hhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCC
Confidence            345555666666666679999999999998887776543                     222223444443        


Q ss_pred             -----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           65 -----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        65 -----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                                                   ..+.+|||.+|.+.-++.+||+|+-.||++++|+..+|+||++|++-|.++
T Consensus       113 GtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvV  192 (354)
T KOG0025|consen  113 GTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVV  192 (354)
T ss_pred             ccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEe
Confidence                                         667899999998888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHH---hcCCCeeeecCCcccHHH-HHHhhccC--Cc----ccccHHHHHHHHHhhcCCC-eEEEeeCCCC-
Q 029543          116 GSKEKVDLLKN---KFGFDDAFNYKEEPDLDV-ALKRMFLC--WV----DFVGIEYCRSLLLVLLFRP-LKIMENDSGS-  183 (192)
Q Consensus       116 ~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~-~i~~~~~~--g~----d~~g~~~~~~~~~~l~~~G-~v~~G~~~~~-  183 (192)
                      |+....+.+++   .+||++||...+   +.+ ..+.....  .+    +|+|+.......+.|..|| .+.+|.++.. 
T Consensus       193 RdR~~ieel~~~Lk~lGA~~ViTeee---l~~~~~~k~~~~~~~prLalNcVGGksa~~iar~L~~GgtmvTYGGMSkqP  269 (354)
T KOG0025|consen  193 RDRPNIEELKKQLKSLGATEVITEEE---LRDRKMKKFKGDNPRPRLALNCVGGKSATEIARYLERGGTMVTYGGMSKQP  269 (354)
T ss_pred             ecCccHHHHHHHHHHcCCceEecHHH---hcchhhhhhhccCCCceEEEeccCchhHHHHHHHHhcCceEEEecCccCCC
Confidence            99877776653   689999996542   221 12222111  22    9999999999999999999 5789988754 


Q ss_pred             Cccccc
Q 029543          184 TPIPFA  189 (192)
Q Consensus       184 ~~~~~~  189 (192)
                      .++|..
T Consensus       270 v~~~ts  275 (354)
T KOG0025|consen  270 VTVPTS  275 (354)
T ss_pred             cccccc
Confidence            556554

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.79  E-value=3.3e-18  Score=140.80  Aligned_cols=164  Identities=18%  Similarity=0.203  Sum_probs=124.1

Q ss_pred             cccchhhhhhhhccc--cc------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCC
Q 029543            5 IRNTSKRLCKIQNIL--KQ------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGG   63 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~--g~------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~   63 (192)
                      |+.|..++|++....  |.                  ...|++++|+.++...+.       .+|+.... ....+    
T Consensus        97 c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~-------~lP~~l~~~~aa~l----  165 (365)
T cd08277          97 CRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVA-------KIDPAAPLEHVCLL----  165 (365)
T ss_pred             hcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheE-------ECCCCCCHHHhhHh----
Confidence            678889999886432  11                  125789999999887665       22322100 00111    


Q ss_pred             CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc-cc
Q 029543           64 VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE-PD  141 (192)
Q Consensus        64 ~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~-~~  141 (192)
                       .++++|||+++.+..++++|++|+|+| +|++|++++|+||++|+ +|++++++++|++.++ ++|+++++++.+. .+
T Consensus       166 -~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~-~~ga~~~i~~~~~~~~  242 (365)
T cd08277         166 -GCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK-EFGATDFINPKDSDKP  242 (365)
T ss_pred             -cchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCCcEeccccccch
Confidence             558899999987778899999999998 79999999999999999 8999999999999998 9999999987652 14


Q ss_pred             HHHHHHhhccCCc----cccc-HHHHHHHHHhhcCC-Ce-EEEeeCCC
Q 029543          142 LDVALKRMFLCWV----DFVG-IEYCRSLLLVLLFR-PL-KIMENDSG  182 (192)
Q Consensus       142 ~~~~i~~~~~~g~----d~~g-~~~~~~~~~~l~~~-G~-v~~G~~~~  182 (192)
                      +.+.+++.+++++    |++| ...+..++++++++ |+ +.+|...+
T Consensus       243 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  290 (365)
T cd08277         243 VSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPG  290 (365)
T ss_pred             HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCc
Confidence            5677776665444    8999 46889999999885 84 68887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.77  E-value=1.1e-17  Score=135.81  Aligned_cols=169  Identities=20%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|+.|.++.|.+....+...+|.+++|+.++...+..       +|+.... ....+     ++++.|+|+++. ..++.
T Consensus        96 ~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~-------lp~~~~~~~aa~l-----~~~~~ta~~~~~-~~~~~  162 (333)
T cd08296          96 ACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALAR-------IPDDLDAAEAAPL-----LCAGVTTFNALR-NSGAK  162 (333)
T ss_pred             hhhCcCcccCCCCCccCcccCCcceeEEEEchhheEe-------CCCCCCHHHhhhh-----hhhhHHHHHHHH-hcCCC
Confidence            4678899999988877776678999999998765552       2221100 11112     568889999995 45899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc--cccc-H
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV--DFVG-I  159 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~--d~~g-~  159 (192)
                      ++++|+|+| +|++|++++|+||++|++|+++++++++++.++ ++|+++++++.++ ++.+.+++..+-.+  |++| .
T Consensus       163 ~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~-~~~~~~~~~~~~d~vi~~~g~~  239 (333)
T cd08296         163 PGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR-KLGAHHYIDTSKE-DVAEALQELGGAKLILATAPNA  239 (333)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcCCcEEecCCCc-cHHHHHHhcCCCCEEEECCCch
Confidence            999999999 899999999999999999999999999999998 9999999998876 77777766521122  8886 6


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          160 EYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      ..+..++++++++|+ +.+|......+++.
T Consensus       240 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  269 (333)
T cd08296         240 KAISALVGGLAPRGKLLILGAAGEPVAVSP  269 (333)
T ss_pred             HHHHHHHHHcccCCEEEEEecCCCCCCcCH
Confidence            788999999999995 67887665445543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.76  E-value=3.3e-18  Score=139.61  Aligned_cols=159  Identities=13%  Similarity=0.044  Sum_probs=113.2

Q ss_pred             chhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH--hCCCCCC
Q 029543            8 TSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI--CSPKKGE   85 (192)
Q Consensus         8 g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~--~~~~~g~   85 (192)
                      +..|+|.+.+..|...+|+++||++|+..++.       .+|+..     ++..+...++++++|+++.+.  ..+++|+
T Consensus        98 ~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~-------~vP~~l-----~~~~aa~~~~~~~a~~a~~~~~~~~~~~g~  165 (341)
T cd08237          98 IPENYLPSSRFRSSGYDGFMQDYVFLPPDRLV-------KLPDNV-----DPEVAAFTELVSVGVHAISRFEQIAHKDRN  165 (341)
T ss_pred             chhccCCCcceeEecCCCceEEEEEEchHHeE-------ECCCCC-----ChHHhhhhchHHHHHHHHHHHhhcCCCCCC
Confidence            45678888777777778999999999987665       333321     112222356889999998542  3568899


Q ss_pred             EEEEeCCCchHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-ccccH---
Q 029543           86 YVYVSAASGAVGQLVGQFAKL-AGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-DFVGI---  159 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~-~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-d~~g~---  159 (192)
                      +|+|+| +|++|++++|+++. .|+ +|++++++++|+++++ +.+++..++     ++.+.   ..-+-+ |++|+   
T Consensus       166 ~VlV~G-~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~-~~~~~~~~~-----~~~~~---~g~d~viD~~G~~~~  235 (341)
T cd08237         166 VIGVWG-DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS-FADETYLID-----DIPED---LAVDHAFECVGGRGS  235 (341)
T ss_pred             EEEEEC-CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh-hcCceeehh-----hhhhc---cCCcEEEECCCCCcc
Confidence            999999 69999999999986 665 8999999999999998 777654332     22111   101112 99994   


Q ss_pred             -HHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          160 -EYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       160 -~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                       .+++.++++++++|+ +++|...++.++++
T Consensus       236 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  266 (341)
T cd08237         236 QSAINQIIDYIRPQGTIGLMGVSEYPVPINT  266 (341)
T ss_pred             HHHHHHHHHhCcCCcEEEEEeecCCCcccCH
Confidence             478999999999995 57887654444443

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.76  E-value=1.7e-16  Score=127.87  Aligned_cols=162  Identities=18%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhccc-------------C--------CCcccccCCCCC----------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL-------------D--------TSLFYSFCPGGV----------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~-------------~--------~~~~~~~~~g~~----------   64 (192)
                      .+...++.|...+++|+|++.++++++.+.....+.             .        ++....+..|+.          
T Consensus        16 ~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~g~~   95 (324)
T cd08292          16 LEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVHGTW   95 (324)
T ss_pred             EEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccCCCcc
Confidence            455666777778899999999999988543222110             0        111112223321          


Q ss_pred             --------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           65 --------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        65 --------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                                                ++.++|+|+++ +..++.+|++|+|+|++|++|++++|+|+++|++++++++++
T Consensus        96 ~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~  174 (324)
T cd08292          96 AEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD  174 (324)
T ss_pred             eeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH
Confidence                                      34578889988 567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       119 ~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ++.+.++ ++|+++++++++. ++.+.+++.+.+ ++    |++|+.....++++++++|+ +.+|..
T Consensus       175 ~~~~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         175 AGVAELR-ALGIGPVVSTEQP-GWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             HHHHHHH-hcCCCEEEcCCCc-hHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecC
Confidence            9999998 7899999998876 888888888765 66    89998888999999999995 677865

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.75  E-value=3e-17  Score=134.63  Aligned_cols=163  Identities=18%  Similarity=0.157  Sum_probs=123.3

Q ss_pred             cccchhhhhhhhccccc-------cCCCCCCCeEEEEEE-EeeeChhhhhhhcccCCCcccccCCCCC-chhHHHHHHHH
Q 029543            5 IRNTSKRLCKIQNILKQ-------NAAEGSKDTVLLKNL-YLSCDPYMQKRMSKLDTSLFYSFCPGGV-IMPSVTAFAGL   75 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~-------~~~g~~~~~vlv~~~-~~~v~p~~~~~~~~~~~~~~~~~~~g~~-~~~~~ta~~~l   75 (192)
                      |+++..|+|.+....|.       ..+|++++|++|+.. ++..       +|+..     ++..+.. +++++|||+++
T Consensus       102 ~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~-------lP~~~-----~~~~aa~~~~~~~ta~~al  169 (361)
T cd08231         102 CLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR-------VPDNV-----PDEVAAPANCALATVLAAL  169 (361)
T ss_pred             HhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEE-------CCCCC-----CHHHHHHhcCHHHHHHHHH
Confidence            56778899988766654       246899999999874 4442       22210     1111111 46899999999


Q ss_pred             HHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc--cHHHHHHhhccC
Q 029543           76 YEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP--DLDVALKRMFLC  152 (192)
Q Consensus        76 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~--~~~~~i~~~~~~  152 (192)
                      .+.....+|++|||+| +|++|++++|+|+.+|+ +|+++++++++.+.++ ++|++.++++++..  ++.+.+++.+++
T Consensus       170 ~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~  247 (361)
T cd08231         170 DRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR-EFGADATIDIDELPDPQRRAIVRDITGG  247 (361)
T ss_pred             HhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCCeEEcCcccccHHHHHHHHHHhCC
Confidence            6666666999999998 79999999999999999 9999999999999998 99999999876541  233567777654


Q ss_pred             -Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          153 -WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       153 -g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                       ++    |++|+ ..+..++++++++|+ +.+|...
T Consensus       248 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~  283 (361)
T cd08231         248 RGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVA  283 (361)
T ss_pred             CCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCC
Confidence             55    88885 678999999999995 5777654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.75  E-value=3.5e-17  Score=134.15  Aligned_cols=158  Identities=14%  Similarity=0.128  Sum_probs=114.0

Q ss_pred             cccchhhhhhhhccc--cc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHH----
Q 029543            5 IRNTSKRLCKIQNIL--KQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYE----   77 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~--g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~----   77 (192)
                      |+.|++++|.+....  |. ..+|+++||++++...+..       +|+... .     .+...++++++++++..    
T Consensus        98 c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~-------~P~~~~-~-----~a~~~~p~~~~~~a~~~~~~~  164 (355)
T cd08230          98 CRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVK-------VPPSLA-D-----VGVLLEPLSVVEKAIEQAEAV  164 (355)
T ss_pred             hhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEE-------CCCCCC-c-----ceeecchHHHHHHHHHHHhhh
Confidence            567888899875443  33 2578999999999887663       333211 1     11114466666655532    


Q ss_pred             --HhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC
Q 029543           78 --ICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC  152 (192)
Q Consensus        78 --~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~  152 (192)
                        ...+.+|++|+|+| +|++|++++|+||++|++|+++++   +++|++.++ ++|++. +++.++ ++.+ .+ .. +
T Consensus       165 ~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~-~~Ga~~-v~~~~~-~~~~-~~-~~-~  237 (355)
T cd08230         165 QKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE-ELGATY-VNSSKT-PVAE-VK-LV-G  237 (355)
T ss_pred             hhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEE-ecCCcc-chhh-hh-hc-C
Confidence              12356899999999 699999999999999999999998   688999999 999987 566655 5544 22 22 2


Q ss_pred             Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          153 WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       153 g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++    |++|. ..+..+++.++++|+ +.+|..++
T Consensus       238 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~  273 (355)
T cd08230         238 EFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGG  273 (355)
T ss_pred             CCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCC
Confidence            33    99995 578999999999995 58888765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.75  E-value=2.4e-16  Score=127.54  Aligned_cols=114  Identities=29%  Similarity=0.378  Sum_probs=94.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEe-CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVS-AASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~-Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +++++|||..+ +..+. ++++++|+ |++|++|++++|+||++|++|++++++++|++.++ ++|++++++++++ ++.
T Consensus       126 ~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~-~~~  201 (324)
T cd08291         126 FVNPLTALGML-ETARE-EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK-KIGAEYVLNSSDP-DFL  201 (324)
T ss_pred             cccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEECCCc-cHH
Confidence            45567787555 55555 56666665 77999999999999999999999999999999999 8999999998877 888


Q ss_pred             HHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          144 VALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +.+++.+.+ ++    |++|+......+++++++|+ +.+|..++
T Consensus       202 ~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~  246 (324)
T cd08291         202 EDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSG  246 (324)
T ss_pred             HHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCC
Confidence            888887765 55    89998888889999999995 67887544

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.75  E-value=3.9e-17  Score=135.56  Aligned_cols=165  Identities=18%  Similarity=0.151  Sum_probs=126.3

Q ss_pred             cccchhhhhhhhcccccc-CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH--hCC
Q 029543            5 IRNTSKRLCKIQNILKQN-AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI--CSP   81 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~-~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~--~~~   81 (192)
                      |..+..++|.+....|+. ..|++++|+.++...+..-|...   +..   ....     .+++++|||+++...  +++
T Consensus       123 c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l---~~~---~aa~-----l~~~~~tA~~al~~~~~~~~  191 (393)
T cd08246         123 RAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHL---SWE---EAAA-----YMLVGATAYRMLFGWNPNTV  191 (393)
T ss_pred             ccccccccccccccccccCCCCcceeEEEechHHeEECCCCC---CHH---HHhh-----hcccHHHHHHHHhhcccccC
Confidence            567788899887777764 46899999999976655222211   000   0011     156899999998544  678


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcc---------------------
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP---------------------  140 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~---------------------  140 (192)
                      .+|++|+|+|++|++|++++++|+++|++++++++++++++.++ ++|+++++|+++++                     
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCR-ALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEAR  270 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCCEEEcccccccccccccccchhhhhhhhccc
Confidence            89999999998899999999999999999999999999999999 89999999864320                     


Q ss_pred             cHHHHHHhhccC--Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          141 DLDVALKRMFLC--WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       141 ~~~~~i~~~~~~--g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+.+++++  ++    |++|+..+..++++++++|+ +.+|...
T Consensus       271 ~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  318 (393)
T cd08246         271 RFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTT  318 (393)
T ss_pred             hHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccC
Confidence            245666776654  44    89998889999999999995 5777644

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.74  E-value=5.3e-16  Score=125.41  Aligned_cols=167  Identities=25%  Similarity=0.242  Sum_probs=129.1

Q ss_pred             hhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcc------------cC--------CCcccccCCCCC--------
Q 029543           13 CKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSK------------LD--------TSLFYSFCPGGV--------   64 (192)
Q Consensus        13 C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~------------~~--------~~~~~~~~~g~~--------   64 (192)
                      -.++.....+.|...+++|+|++.++++++.+.....+            ..        ++....+..|+.        
T Consensus        13 ~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~   92 (327)
T PRK10754         13 PEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSAL   92 (327)
T ss_pred             hhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCCC
Confidence            34666667778888899999999999998844322110            00        111111111111        


Q ss_pred             -----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           65 -----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        65 -----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                                                   +++++++|+++.+..++.+|++|+|+|++|++|++++|+||.+|++|++++
T Consensus        93 g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~  172 (327)
T PRK10754         93 GAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV  172 (327)
T ss_pred             cceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEe
Confidence                                         456788888887777899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          116 GSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       116 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +++++.++++ ++|++.+++.++. ++.+.+++.+.+ ++    |++|+.....++++++++|+ +.+|..+
T Consensus       173 ~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~  242 (327)
T PRK10754        173 GSAQKAQRAK-KAGAWQVINYREE-NIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNAS  242 (327)
T ss_pred             CCHHHHHHHH-HCCCCEEEcCCCC-cHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCEEEEEccCC
Confidence            9999999998 9999999988776 788888887765 55    89998888999999999995 5787654

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.74  E-value=4.6e-17  Score=134.84  Aligned_cols=172  Identities=20%  Similarity=0.201  Sum_probs=128.9

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH-hCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI-CSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~-~~~~~   83 (192)
                      |+.+..++|.+....|+..+|++++|+.++...+..-|.....++..     ..+.....+.+++|||+++... .++++
T Consensus       129 c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~-----~~~~~a~~~~~~~ta~~al~~~~~~~~~  203 (384)
T cd08265         129 CRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSED-----KAFEAGALVEPTSVAYNGLFIRGGGFRP  203 (384)
T ss_pred             hhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccC-----CCHHHhhhhhHHHHHHHHHHhhcCCCCC
Confidence            56778899999888887778999999999876554222211000000     0111112256889999998655 68999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc--ccHHHHHHhhccC-Cc----c
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE--PDLDVALKRMFLC-WV----D  155 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~--~~~~~~i~~~~~~-g~----d  155 (192)
                      |++|+|+| +|++|++++|+|+.+|+ +|++++++++|.+.++ ++|+++++++++.  +++.+.+++.+.+ ++    |
T Consensus       204 g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld  281 (384)
T cd08265         204 GAYVVVYG-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAK-EMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVE  281 (384)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEE
Confidence            99999997 79999999999999999 8999999999998888 9999999887631  1567778777765 55    8


Q ss_pred             cccH--HHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          156 FVGI--EYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       156 ~~g~--~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      ++|+  ..+..++++++++|+ +.+|.....
T Consensus       282 ~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~  312 (384)
T cd08265         282 AAGAPPATIPQMEKSIAINGKIVYIGRAATT  312 (384)
T ss_pred             CCCCcHHHHHHHHHHHHcCCEEEEECCCCCC
Confidence            8885  378899999999995 577765443

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.73  E-value=5.4e-17  Score=133.23  Aligned_cols=166  Identities=14%  Similarity=0.129  Sum_probs=119.1

Q ss_pred             cccchhhhhhhhcc-------ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHH
Q 029543            5 IRNTSKRLCKIQNI-------LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLY   76 (192)
Q Consensus         5 ~~~g~~~~C~~~~~-------~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~   76 (192)
                      |+.|..++|.+...       .|...+|+++||++++...+..       +|+.... ...++     ++++.|||+++.
T Consensus       106 c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~-------iP~~~~~~~aa~l-----~~~~~ta~~al~  173 (357)
T PLN02514        106 CKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVK-------IPEGMAPEQAAPL-----LCAGVTVYSPLS  173 (357)
T ss_pred             HhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEE-------CCCCCCHHHhhhh-----hhhHHHHHHHHH
Confidence            67888899987421       2334579999999999765552       2222100 11112     568899999996


Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc-
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV-  154 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~-  154 (192)
                      +....++|++|+|+| +|++|++++|+||++|++|+++++++++++.+.+++|++.++++.++    +.+.+.+.+ .+ 
T Consensus       174 ~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~----~~~~~~~~~~D~v  248 (357)
T PLN02514        174 HFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDA----AEMQEAADSLDYI  248 (357)
T ss_pred             HcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCCh----HHHHHhcCCCcEE
Confidence            555567899999997 79999999999999999999999888877666547999988876532    233444332 22 


Q ss_pred             -ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCccc
Q 029543          155 -DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIP  187 (192)
Q Consensus       155 -d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~  187 (192)
                       |++|. ..++.++++++++|+ +.+|...+..+++
T Consensus       249 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  284 (357)
T PLN02514        249 IDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFV  284 (357)
T ss_pred             EECCCchHHHHHHHHHhccCCEEEEECCCCCCCccc
Confidence             99994 688999999999995 6788765544443

>PRK10083 putative oxidoreductase; Provisional

Probab=99.73  E-value=8.1e-17  Score=130.85  Aligned_cols=161  Identities=16%  Similarity=0.087  Sum_probs=122.7

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      |+.+++++|.+....+...+|++++|+.++...+.       .+|....     +..+...+++.++++++ +..++++|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~ip~~~~-----~~~a~~~~~~~~a~~~~-~~~~~~~g  161 (339)
T PRK10083         95 CSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAH-------RIPDAIA-----DQYAVMVEPFTIAANVT-GRTGPTEQ  161 (339)
T ss_pred             ccCcCcccCCCCceEEEccCCcceeeEEechHHeE-------ECcCCCC-----HHHHhhhchHHHHHHHH-HhcCCCCC
Confidence            56788899988776666668999999999986655       2222211     00011145778888655 77889999


Q ss_pred             CEEEEeCCCchHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCC--c--cccc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKL-AGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCW--V--DFVG  158 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~-~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g--~--d~~g  158 (192)
                      ++|+|+| +|++|++++|+|+. +|+ .+++++++++|.+.++ ++|++.+++++++ ++.+.+... +.+  +  |++|
T Consensus       162 ~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~~-~~~~~~~~~-g~~~d~vid~~g  237 (339)
T PRK10083        162 DVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK-ESGADWVINNAQE-PLGEALEEK-GIKPTLIIDAAC  237 (339)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HhCCcEEecCccc-cHHHHHhcC-CCCCCEEEECCC
Confidence            9999999 89999999999996 699 5888899999999999 9999999998765 677666432 113  2  8998


Q ss_pred             -HHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          159 -IEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       159 -~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                       ...+..++++++++|+ +.+|....
T Consensus       238 ~~~~~~~~~~~l~~~G~~v~~g~~~~  263 (339)
T PRK10083        238 HPSILEEAVTLASPAARIVLMGFSSE  263 (339)
T ss_pred             CHHHHHHHHHHhhcCCEEEEEccCCC
Confidence             5689999999999995 67887543

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.72  E-value=2.5e-16  Score=130.03  Aligned_cols=165  Identities=15%  Similarity=0.122  Sum_probs=123.0

Q ss_pred             ccccchhhhhhhhcccc---------------------ccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCC
Q 029543            4 SIRNTSKRLCKIQNILK---------------------QNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCP   61 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g---------------------~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~   61 (192)
                      .|++++.|.|++....+                     +..+|++++|+.++...+.       .+|+.... ....+  
T Consensus       101 ~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~-------~lP~~l~~~~aa~~--  171 (373)
T cd08299         101 ACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVA-------KIDAAAPLEKVCLI--  171 (373)
T ss_pred             hhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEeccccee-------eCCCCCChHHhhee--
Confidence            47788899998764321                     0135889999999987766       33322100 01111  


Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP  140 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~  140 (192)
                         .+++.|+|+++.+..++++|++|+|+| +|++|++++++|+++|+ +|+++++++++++.++ ++|+++++++.+..
T Consensus       172 ---~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~-~lGa~~~i~~~~~~  246 (373)
T cd08299         172 ---GCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAK-ELGATECINPQDYK  246 (373)
T ss_pred             ---ccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEecccccc
Confidence               558899999987778899999999997 79999999999999999 8999999999999998 99999999876431


Q ss_pred             -cHHHHHHhhccCCc----ccccH-HHHHHHHHhhc-CCCe-EEEeeCCC
Q 029543          141 -DLDVALKRMFLCWV----DFVGI-EYCRSLLLVLL-FRPL-KIMENDSG  182 (192)
Q Consensus       141 -~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~-~~G~-v~~G~~~~  182 (192)
                       ++.+.+++.+.+++    |++|+ ..+..++..++ ++|+ +.+|....
T Consensus       247 ~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~  296 (373)
T cd08299         247 KPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPS  296 (373)
T ss_pred             hhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCC
Confidence             36666666654444    89984 67788787664 6784 67887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.72  E-value=1.7e-16  Score=128.83  Aligned_cols=164  Identities=15%  Similarity=0.173  Sum_probs=125.7

Q ss_pred             ccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCC
Q 029543            6 RNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGE   85 (192)
Q Consensus         6 ~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~   85 (192)
                      +.+..++|.+....|...+|.+++|+.++..++.       .+|+... +   ......+.+++|||+++ +..++++|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-------~~p~~~~-~---~~aa~l~~~~~ta~~~~-~~~~~~~g~  164 (338)
T PRK09422         97 TTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAV-------KVPEGLD-P---AQASSITCAGVTTYKAI-KVSGIKPGQ  164 (338)
T ss_pred             cCCCcccCCCccccCccccCcceeEEEEchHHeE-------eCCCCCC-H---HHeehhhcchhHHHHHH-HhcCCCCCC
Confidence            4567788888777777778999999999986554       2222100 0   00111256889999999 778899999


Q ss_pred             EEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-C-c--ccccHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-W-V--DFVGIE  160 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g-~--d~~g~~  160 (192)
                      +|+|+| +|++|++++|+|+. .|++|+++++++++.+.++ ++|++.++++++.+++.+.+++.+++ . +  ++.+++
T Consensus       165 ~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~  242 (338)
T PRK09422        165 WIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK-EVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKA  242 (338)
T ss_pred             EEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH-HcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCHH
Confidence            999999 79999999999998 4999999999999999998 99999999986522667777766553 2 2  555677


Q ss_pred             HHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          161 YCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       161 ~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      .+..++++++++|+ +.+|.....
T Consensus       243 ~~~~~~~~l~~~G~~v~~g~~~~~  266 (338)
T PRK09422        243 AFNQAVDAVRAGGRVVAVGLPPES  266 (338)
T ss_pred             HHHHHHHhccCCCEEEEEeeCCCC
Confidence            89999999999995 577865443

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.71  E-value=2.3e-15  Score=121.66  Aligned_cols=115  Identities=39%  Similarity=0.530  Sum_probs=98.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.|||+++.+..++.+|++|+|+|++|++|++++|+++..|++|+++++++++.+.++ ++|++.+++.... ++.+
T Consensus       121 ~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~  198 (329)
T cd08250         121 LVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLK-SLGCDRPINYKTE-DLGE  198 (329)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH-HcCCceEEeCCCc-cHHH
Confidence            6788899999977778999999999999999999999999999999999999999999998 8999999887765 6766


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+....+.++    |++|+..+..++++++++|+ +.+|...
T Consensus       199 ~~~~~~~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~  240 (329)
T cd08250         199 VLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFIS  240 (329)
T ss_pred             HHHHhcCCCCeEEEECCcHHHHHHHHHHhccCCeEEEEeccc
Confidence            6665543344    89998899999999999994 6777654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.71  E-value=2.7e-16  Score=130.82  Aligned_cols=166  Identities=17%  Similarity=0.157  Sum_probs=123.1

Q ss_pred             cccchhhhhhhhccccc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHH--HhCC
Q 029543            5 IRNTSKRLCKIQNILKQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYE--ICSP   81 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~--~~~~   81 (192)
                      |+.+..++|......|. ...|++++|++++..++..-|...   +..        ......+++.|||+++..  ..++
T Consensus       119 ~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l---~~~--------~aa~~~~~~~ta~~al~~~~~~~~  187 (398)
T TIGR01751       119 GRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHL---TWE--------EAACPGLTGATAYRQLVGWNPATV  187 (398)
T ss_pred             hccCccccccccccccccCCCccceEEEEechHHeEECCCCC---CHH--------HHhhccchHHHHHHHHhhhhccCC
Confidence            55667778876555553 246888999999976655222110   000        001115688999999854  4678


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcc---------------------
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP---------------------  140 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~---------------------  140 (192)
                      .+|++|+|+|++|++|++++|+|+++|++++++++++++.+.++ ++|++.++|+++++                     
T Consensus       188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (398)
T TIGR01751       188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCR-ELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFK  266 (398)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCCEEecCCCcchhhccccccccccchhhhcch
Confidence            89999999998899999999999999999999999999999999 89999999875420                     


Q ss_pred             cHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          141 DLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       141 ~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .+.+.+.+.+.+ ++    |++|...+..++++++++|+ +.+|..++
T Consensus       267 ~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~  314 (398)
T TIGR01751       267 RFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTG  314 (398)
T ss_pred             hHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccC
Confidence            134456666654 55    89998889999999999994 67887543

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.70  E-value=4.5e-16  Score=127.26  Aligned_cols=163  Identities=18%  Similarity=0.099  Sum_probs=121.8

Q ss_pred             cccchhhhhhhhc---cccccCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHh
Q 029543            5 IRNTSKRLCKIQN---ILKQNAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEIC   79 (192)
Q Consensus         5 ~~~g~~~~C~~~~---~~g~~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~   79 (192)
                      |+.|..++|.+..   ..+...+|++++|+.++..  .+.       .+|.....    ......++++.|+|+++ +..
T Consensus        95 c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~-------~lP~~~~~----~~aa~~~~~~~ta~~~~-~~~  162 (351)
T cd08285          95 AQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLA-------PLPDGLTD----EQAVMLPDMMSTGFHGA-ELA  162 (351)
T ss_pred             HHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceE-------ECCCCCCH----HHhhhhccchhhHHHHH-Hcc
Confidence            4566777777642   1123357889999999863  333       22221000    00011145889999997 677


Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc---
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV---  154 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~---  154 (192)
                      ++++|++|+|+| +|++|++++|+||++|+ .|+++++++++.+.++ ++|++.++++.+. ++.+.+.+.+.+ ++   
T Consensus       163 ~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~~-~~~~~i~~~~~~~~~d~v  239 (351)
T cd08285         163 NIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK-EYGATDIVDYKNG-DVVEQILKLTGGKGVDAV  239 (351)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCceEecCCCC-CHHHHHHHHhCCCCCcEE
Confidence            899999999997 79999999999999999 6999999999999999 9999999998876 788888776654 55   


Q ss_pred             -ccccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          155 -DFVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       155 -d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                       |++|+ ..+..++++++++|+ +.+|....
T Consensus       240 ld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  270 (351)
T cd08285         240 IIAGGGQDTFEQALKVLKPGGTISNVNYYGE  270 (351)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEecccCC
Confidence             89985 588999999999995 57787654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.70  E-value=4.9e-15  Score=118.80  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=97.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.|||+++.+..++.+|++|+|+|++|++|++++|+|+..|++|+++++++++.+.++ ++|++++++. .+ ++.+
T Consensus       124 ~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~-~~-~~~~  200 (320)
T cd08243         124 PETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELGADEVVID-DG-AIAE  200 (320)
T ss_pred             chHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEec-Cc-cHHH
Confidence            6788999999977778899999999999999999999999999999999999999999998 9999888764 44 6777


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+++. +.++    |++|+..+..++++++++|+ +.+|...
T Consensus       201 ~i~~~-~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~  241 (320)
T cd08243         201 QLRAA-PGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLG  241 (320)
T ss_pred             HHHHh-CCCceEEEECCChHHHHHHHHHhccCCEEEEEccCC
Confidence            77766 3355    89998899999999999995 5777643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.70  E-value=4.1e-15  Score=120.14  Aligned_cols=115  Identities=26%  Similarity=0.240  Sum_probs=99.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc-HH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD-LD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~  143 (192)
                      ++++.|||+++.+..++.+|++|+|+|++|++|++++++|++.|++++.+++++++.++++ ++|++.++++... + +.
T Consensus       122 ~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  199 (334)
T PTZ00354        122 PEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK-KLAAIILIRYPDE-EGFA  199 (334)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCCh-hHHH
Confidence            5677899999877788999999999999999999999999999998888999999999998 8999999988765 4 77


Q ss_pred             HHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          144 VALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +.+++.+++ ++    |++|+..+..++++++++|+ +.+|...
T Consensus       200 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~  243 (334)
T PTZ00354        200 PKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMG  243 (334)
T ss_pred             HHHHHHhCCCCceEEEECCchHHHHHHHHHhccCCeEEEEecCC
Confidence            777777654 55    88898899999999999994 6777543

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.70  E-value=5.2e-16  Score=126.08  Aligned_cols=161  Identities=17%  Similarity=0.179  Sum_probs=125.5

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHH-hCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEI-CSPK   82 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~-~~~~   82 (192)
                      |+.|..++|++.+..|...+|.+++|+.++..++..       +|..... ....+     ++.+.|||+++.+. ..+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~-------~P~~ls~~~aa~l-----~~~~~ta~~~l~~~~~~~~  166 (340)
T cd05284          99 CRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVK-------LPRGLDPVEAAPL-----ADAGLTAYHAVKKALPYLD  166 (340)
T ss_pred             HhCcCcccCCCCcccCccCCCcceeeEEecHHHeEE-------CCCCCCHHHhhhh-----cchHHHHHHHHHHhcccCC
Confidence            445667889998888887889999999998876552       2221100 11112     56889999999665 4678


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DF  156 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~  156 (192)
                      ++++|+|+| +|++|++++|+|+..| ++|+++++++++.+.++ ++|+++++++++  ++.+.+++.+.+ ++    |+
T Consensus       167 ~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~i~~~~~~~~~dvvld~  242 (340)
T cd05284         167 PGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDRSEEALKLAE-RLGADHVLNASD--DVVEEVRELTGGRGADAVIDF  242 (340)
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH-HhCCcEEEcCCc--cHHHHHHHHhCCCCCCEEEEc
Confidence            899999999 6779999999999999 69999999999999998 999999998775  366777776654 55    89


Q ss_pred             ccH-HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          157 VGI-EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       157 ~g~-~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +|+ ...+.++++++++|+ +.+|..+
T Consensus       243 ~g~~~~~~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         243 VGSDETLALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             CCCHHHHHHHHHHhhcCCEEEEEcCCC
Confidence            994 788999999999995 5777554

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.69  E-value=7.5e-16  Score=125.89  Aligned_cols=163  Identities=15%  Similarity=0.086  Sum_probs=122.8

Q ss_pred             cccchhhhhhhhccccc--cCCCCCCCeEEEEEEE-eeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCC
Q 029543            5 IRNTSKRLCKIQNILKQ--NAAEGSKDTVLLKNLY-LSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSP   81 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~--~~~g~~~~~vlv~~~~-~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~   81 (192)
                      |+.+..+.|......|.  ..+|.+++|+.++... +..       +|....     +..+....+++|+|+++ +..++
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~-------lP~~~~-----~~~aa~~~~~~ta~~a~-~~~~~  172 (350)
T cd08256         106 CNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHK-------VPDDIP-----PEDAILIEPLACALHAV-DRANI  172 (350)
T ss_pred             HhCcCcccCcCccceeeccCCCCcceeeEEcccccceEE-------CCCCCC-----HHHHhhhhHHHHHHHHH-HhcCC
Confidence            56777788876655454  2578999999998763 332       221100     00011124888999998 77899


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----c
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----D  155 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d  155 (192)
                      .+|++|+|.| +|++|++++|+|+++|+ .++++++++++.+.++ ++|++.+++++.. ++.+.+.+.+++ ++    |
T Consensus       173 ~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~~~~~~~~~~~vdvvld  249 (350)
T cd08256         173 KFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR-KFGADVVLNPPEV-DVVEKIKELTGGYGCDIYIE  249 (350)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH-HcCCcEEecCCCc-CHHHHHHHHhCCCCCCEEEE
Confidence            9999999966 79999999999999998 6888898999999888 9999999988766 788888877664 55    8


Q ss_pred             ccc-HHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          156 FVG-IEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       156 ~~g-~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      ++| ...+..++++++++|+ +.+|.....
T Consensus       250 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  279 (350)
T cd08256         250 ATGHPSAVEQGLNMIRKLGRFVEFSVFGDP  279 (350)
T ss_pred             CCCChHHHHHHHHHhhcCCEEEEEccCCCC
Confidence            888 4688899999999995 577765443

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.68  E-value=1.2e-15  Score=125.61  Aligned_cols=143  Identities=20%  Similarity=0.198  Sum_probs=113.8

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHH
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQF  103 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~  103 (192)
                      +|++++|++++..++..-|...   +..   ...++     ++++.||+.++.+...+++|++|+|+| +|++|++++|+
T Consensus       138 ~g~~~~y~~v~~~~~~~iP~~~---s~~---~a~~l-----~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~l  205 (365)
T cd08278         138 QSSFATYAVVHERNVVKVDKDV---PLE---LLAPL-----GCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMA  205 (365)
T ss_pred             ccceeeEEEecchhEEECCCCC---CHH---Hhhhh-----cchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHH
Confidence            5788999999987766322211   000   11112     668899999987778899999999997 79999999999


Q ss_pred             HHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc-HHHHHHHHHhhcCCCe-EE
Q 029543          104 AKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG-IEYCRSLLLVLLFRPL-KI  176 (192)
Q Consensus       104 a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g-~~~~~~~~~~l~~~G~-v~  176 (192)
                      |++.|+ +|++++++++|.+.++ ++|++.+++++++ ++.+.+.+.++.++    |++| ...+..++++++++|+ +.
T Consensus       206 a~~~G~~~v~~~~~~~~k~~~~~-~~g~~~~i~~~~~-~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~  283 (365)
T cd08278         206 AKIAGCTTIIAVDIVDSRLELAK-ELGATHVINPKEE-DLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLAL  283 (365)
T ss_pred             HHHcCCCeEEEEeCCHHHHHHHH-HcCCcEEecCCCc-CHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEE
Confidence            999999 6999999999999998 9999999998876 78887877763355    8998 4688999999999995 57


Q ss_pred             EeeC
Q 029543          177 MEND  180 (192)
Q Consensus       177 ~G~~  180 (192)
                      +|..
T Consensus       284 ~g~~  287 (365)
T cd08278         284 VGAP  287 (365)
T ss_pred             eCcC
Confidence            7765

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.68  E-value=7.3e-15  Score=119.11  Aligned_cols=111  Identities=17%  Similarity=0.272  Sum_probs=93.5

Q ss_pred             chhHHHHHHHHHHHhCCCC-----CCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 029543           65 IMPSVTAFAGLYEICSPKK-----GEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKE  138 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~-----g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~  138 (192)
                      ++++.|||+++.+..++.+     |++|+|+|++|++|++++|+||.+ |++|+++++++++.+.++ ++|+++++++..
T Consensus       125 ~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~-~~g~~~~~~~~~  203 (336)
T TIGR02817       125 PLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVL-ELGAHHVIDHSK  203 (336)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH-HcCCCEEEECCC
Confidence            6778899999877778877     999999999999999999999998 999999999999999998 999999998653


Q ss_pred             cccHHHHHHhhccCCc----cccc-HHHHHHHHHhhcCCCe-EEEe
Q 029543          139 EPDLDVALKRMFLCWV----DFVG-IEYCRSLLLVLLFRPL-KIME  178 (192)
Q Consensus       139 ~~~~~~~i~~~~~~g~----d~~g-~~~~~~~~~~l~~~G~-v~~G  178 (192)
                        ++.+.+++....++    |+++ +.....++++++++|+ +.++
T Consensus       204 --~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~  247 (336)
T TIGR02817       204 --PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALID  247 (336)
T ss_pred             --CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEc
Confidence              67777776543345    7765 5788999999999995 4554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.68  E-value=1.6e-15  Score=123.65  Aligned_cols=164  Identities=23%  Similarity=0.229  Sum_probs=125.8

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      +..|..|+|.+....+...+|++++|++++..  ++..       +|......    .....+++++|||+++.+..++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~-------iP~~~~~~----~aa~l~~~~~ta~~~l~~~~~~~  164 (345)
T cd08260          96 CRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVR-------LPDDVDFV----TAAGLGCRFATAFRALVHQARVK  164 (345)
T ss_pred             ccCcCcccCCCCcccccCCCCcceeEEEcccccCceEE-------CCCCCCHH----HhhhhccchHHHHHHHHHccCCC
Confidence            45677788888655555557899999999863  4432       22210000    00111558899999987778899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-cccHHHHHHhhccCCc----ccc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKE-EPDLDVALKRMFLCWV----DFV  157 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~i~~~~~~g~----d~~  157 (192)
                      ++++|+|+| +|++|++++|+|+..|++|+++++++++.+.++ ++|++.+++++. . ++.+.+.+...+++    |++
T Consensus       165 ~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~~-~~~~~~~~~~~~~~d~vi~~~  241 (345)
T cd08260         165 PGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELAR-ELGAVATVNASEVE-DVAAAVRDLTGGGAHVSVDAL  241 (345)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HhCCCEEEccccch-hHHHHHHHHhCCCCCEEEEcC
Confidence            999999999 799999999999999999999999999999998 899999999886 5 77777776654444    888


Q ss_pred             c-HHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          158 G-IEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       158 g-~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      | ......++++++++|+ +.+|....
T Consensus       242 g~~~~~~~~~~~l~~~g~~i~~g~~~~  268 (345)
T cd08260         242 GIPETCRNSVASLRKRGRHVQVGLTLG  268 (345)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEeCCcCC
Confidence            8 5688899999999995 57776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.68  E-value=6.8e-15  Score=118.41  Aligned_cols=116  Identities=29%  Similarity=0.277  Sum_probs=100.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++++|+++.+...+.+|++|+|+|++|++|++++|+|+++|++++++++++++.+.++ ++|++.++++.+. ++.+
T Consensus       120 ~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  197 (323)
T cd05282         120 YINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK-ALGADEVIDSSPE-DLAQ  197 (323)
T ss_pred             hccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHH-hcCCCEEecccch-hHHH
Confidence            4578889999877778899999999998899999999999999999999999999999998 9999999998765 7777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .+.+.+.+ ++    |++|+......+++++++|+ +.+|....
T Consensus       198 ~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~  241 (323)
T cd05282         198 RVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSG  241 (323)
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCC
Confidence            78777665 55    89998878889999999995 56776543

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.68  E-value=1e-15  Score=124.56  Aligned_cols=165  Identities=18%  Similarity=0.209  Sum_probs=124.2

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .|+.++.|+|++.+..+...+|.+++++.++...+..-|       ....     +..+....++.++++++..  ...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP-------~~l~-----~~~~~~~~~~~~~~~~~~~--~~~~  163 (341)
T PRK05396         98 NCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIP-------DDIP-----DDLAAIFDPFGNAVHTALS--FDLV  163 (341)
T ss_pred             hhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECc-------CCCC-----HHHhHhhhHHHHHHHHHHc--CCCC
Confidence            467788899998777777778999999999987655222       2100     0011113466667666532  3458


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFV  157 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~  157 (192)
                      |++|+|.| +|++|++++|+|+++|+ +|+++++++++.++++ ++|++.++++++. ++.+.+++.+.+ ++    |++
T Consensus       164 g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~lg~~~~~~~~~~-~~~~~~~~~~~~~~~d~v~d~~  240 (341)
T PRK05396        164 GEDVLITG-AGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR-KMGATRAVNVAKE-DLRDVMAELGMTEGFDVGLEMS  240 (341)
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhCCcEEecCccc-cHHHHHHHhcCCCCCCEEEECC
Confidence            99999987 79999999999999999 7888888999999998 9999999998876 788888877654 55    888


Q ss_pred             c-HHHHHHHHHhhcCCCe-EEEeeCCCCCc
Q 029543          158 G-IEYCRSLLLVLLFRPL-KIMENDSGSTP  185 (192)
Q Consensus       158 g-~~~~~~~~~~l~~~G~-v~~G~~~~~~~  185 (192)
                      | ...++.++++++++|+ +.+|..+...+
T Consensus       241 g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~  270 (341)
T PRK05396        241 GAPSAFRQMLDNMNHGGRIAMLGIPPGDMA  270 (341)
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEecCCCCCc
Confidence            7 4688999999999995 67776554333

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.67  E-value=1.7e-15  Score=123.41  Aligned_cols=171  Identities=15%  Similarity=0.091  Sum_probs=125.2

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCccccc-CCCCCchhHHHHHHHHHHHhCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSF-CPGGVIMPSVTAFAGLYEICSP   81 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~-~~g~~~~~~~ta~~~l~~~~~~   81 (192)
                      ++.+..+.|.+....+...+|++++|+.++..  .+.       .+|+........+ ......++++|||+++ +..++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-------~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~  166 (345)
T cd08287          95 CRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLV-------KVPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGV  166 (345)
T ss_pred             hhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceE-------ECCCCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCC
Confidence            34566677777666777788999999999873  333       2222100000000 0000125788999998 57789


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----c
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----D  155 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d  155 (192)
                      .+|++|+|.| +|++|++++|+|+++|+ .++++++++++.+.++ ++|++.++++.+. ++.+.+.+.+++ ++    |
T Consensus       167 ~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~ga~~v~~~~~~-~~~~~i~~~~~~~~~d~il~  243 (345)
T cd08287         167 RPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR-EFGATDIVAERGE-EAVARVRELTGGVGADAVLE  243 (345)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCceEecCCcc-cHHHHHHHhcCCCCCCEEEE
Confidence            9999999987 89999999999999999 5889988888999888 9999999999876 788888877654 55    8


Q ss_pred             ccc-HHHHHHHHHhhcCCCe-EEEeeCCCCCcc
Q 029543          156 FVG-IEYCRSLLLVLLFRPL-KIMENDSGSTPI  186 (192)
Q Consensus       156 ~~g-~~~~~~~~~~l~~~G~-v~~G~~~~~~~~  186 (192)
                      ++| ...++.++++++++|+ +.+|...+..++
T Consensus       244 ~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~  276 (345)
T cd08287         244 CVGTQESMEQAIAIARPGGRVGYVGVPHGGVEL  276 (345)
T ss_pred             CCCCHHHHHHHHHhhccCCEEEEecccCCCCcc
Confidence            887 4688999999999995 566765433333

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.67  E-value=1.7e-15  Score=124.69  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=120.8

Q ss_pred             cccchhhhhhhhccccc---------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCC
Q 029543            5 IRNTSKRLCKIQNILKQ---------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPG   62 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~---------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g   62 (192)
                      |+.+.++.|.....++.                     ...|++++|++++...+..       +|..... ....+   
T Consensus        95 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~-------lP~~~~~~~a~~~---  164 (365)
T cd05279          95 CLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAK-------IDPDAPLEKVCLI---  164 (365)
T ss_pred             hcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEE-------CCCCCCHHHhhHh---
Confidence            45677778876554421                     1246889999999876652       2222100 01111   


Q ss_pred             CCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc-
Q 029543           63 GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP-  140 (192)
Q Consensus        63 ~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~-  140 (192)
                        .++++++|+++.+.+++.+|++|+|+| +|++|++++|+|+.+|+ .|+++++++++.+.++ ++|+++++++++.+ 
T Consensus       165 --~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~~~~  240 (365)
T cd05279         165 --GCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK-QLGATECINPRDQDK  240 (365)
T ss_pred             --ccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCCeecccccccc
Confidence              458899999987788899999999997 79999999999999999 5888888999999998 99999999876531 


Q ss_pred             cHHHHHHhhccCCc----cccc-HHHHHHHHHhhc-CCCe-EEEeeCC
Q 029543          141 DLDVALKRMFLCWV----DFVG-IEYCRSLLLVLL-FRPL-KIMENDS  181 (192)
Q Consensus       141 ~~~~~i~~~~~~g~----d~~g-~~~~~~~~~~l~-~~G~-v~~G~~~  181 (192)
                      ++.+.+++.+++++    |++| ...+..++++++ ++|+ +.+|...
T Consensus       241 ~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  288 (365)
T cd05279         241 PIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPP  288 (365)
T ss_pred             hHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCC
Confidence            45666776664455    8888 478899999999 9995 5677653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.67  E-value=2.3e-15  Score=122.49  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=123.4

Q ss_pred             cchhhhhhhhccccccCCCCCCCeEEEEEEE-----eeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCC
Q 029543            7 NTSKRLCKIQNILKQNAAEGSKDTVLLKNLY-----LSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSP   81 (192)
Q Consensus         7 ~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~-----~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~   81 (192)
                      .+..++|......|...+|.+++|+.++..+     +.       .+|...     ++..+...+++.+||+++. ..++
T Consensus        97 ~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~-------~lP~~~-----~~~~aa~~~~~~~a~~~l~-~~~~  163 (343)
T cd08235          97 RGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVL-------KLPDNV-----SFEEAALVEPLACCINAQR-KAGI  163 (343)
T ss_pred             CcCcccCCCcceeccCCCCcceeeEEecccccccccEE-------ECCCCC-----CHHHHHhhhHHHHHHHHHH-hcCC
Confidence            3446677777777777789999999999875     33       222210     0111111347889999994 4589


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----c
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----D  155 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d  155 (192)
                      .+|++|+|+| +|++|++++|+|+..|++ |+++++++++.+.++ ++|.++++++++. ++.+.+++.+.+ ++    |
T Consensus       164 ~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~~~~vd~vld  240 (343)
T cd08235         164 KPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK-KLGADYTIDAAEE-DLVEKVRELTDGRGADVVIV  240 (343)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEecCCcc-CHHHHHHHHhCCcCCCEEEE
Confidence            9999999997 799999999999999998 999999999999998 9999999998877 888888777655 55    8


Q ss_pred             cccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          156 FVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       156 ~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++|+ ..+..++++++++|+ +.+|....
T Consensus       241 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~  269 (343)
T cd08235         241 ATGSPEAQAQALELVRKGGRILFFGGLPK  269 (343)
T ss_pred             CCCChHHHHHHHHHhhcCCEEEEEeccCC
Confidence            8884 588899999999995 57776543

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.67  E-value=1.2e-15  Score=124.33  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=120.1

Q ss_pred             cccchhhhhhhhcccc-ccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILK-QNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g-~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |+.|.+++|.+....+ ...+|.+++|+.++..++.       .+|...     ++..+....++.+|++++ +..++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-------~lP~~~-----~~~~aa~~~~~~~a~~~~-~~~~~~~  162 (343)
T cd05285          96 CKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCH-------KLPDNV-----SLEEGALVEPLSVGVHAC-RRAGVRP  162 (343)
T ss_pred             HhCcCcccCcCccccccccCCCceeeeEEecHHHcE-------ECcCCC-----CHHHhhhhhHHHHHHHHH-HhcCCCC
Confidence            4456677777654322 1246888999999876554       222211     010111134778999998 7889999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccH---HHHHHhhccC-Cc----
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL---DVALKRMFLC-WV----  154 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~---~~~i~~~~~~-g~----  154 (192)
                      |++|+|.| +|++|.+++|+||.+|++ |+++++++++.+.++ ++|++.+++++++ ++   .+.+.+.+.+ ++    
T Consensus       163 g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~-~~~~~~~~~~~~~~~~~~d~vl  239 (343)
T cd05285         163 GDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK-ELGATHTVNVRTE-DTPESAEKIAELLGGKGPDVVI  239 (343)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEeccccc-cchhHHHHHHHHhCCCCCCEEE
Confidence            99999987 799999999999999996 999999999999998 8999999998765 53   6677766654 45    


Q ss_pred             ccccHH-HHHHHHHhhcCCCe-EEEeeCCC
Q 029543          155 DFVGIE-YCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       155 d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      |++|+. .++.++++++++|+ +.+|....
T Consensus       240 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  269 (343)
T cd05285         240 ECTGAESCIQTAIYATRPGGTVVLVGMGKP  269 (343)
T ss_pred             ECCCCHHHHHHHHHHhhcCCEEEEEccCCC
Confidence            888865 88999999999995 56775443

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.66  E-value=1.5e-14  Score=117.57  Aligned_cols=115  Identities=24%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHhcCCCeeeecCCc-
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK----EKVDLLKNKFGFDDAFNYKEE-  139 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~----~~~~~~~~~~g~~~vi~~~~~-  139 (192)
                      +++++|+|+++.....+.+|++|+|+|++|++|++++|+|++.|++++++++++    ++.+.++ ++|+++++++++. 
T Consensus       128 ~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~  206 (341)
T cd08290         128 SVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLK-ALGADHVLTEEELR  206 (341)
T ss_pred             hccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHH-hcCCCEEEeCcccc
Confidence            467889999997667889999999999899999999999999999998888776    6788888 8999999987641 


Q ss_pred             -ccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          140 -PDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       140 -~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                       .++.+.++...++++    |++|+..+...+++++++|+ +.+|..
T Consensus       207 ~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~  253 (341)
T cd08290         207 SLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGM  253 (341)
T ss_pred             cccHHHHHHHHcCCCceEEEECcCcHhHHHHHHHhCCCCEEEEEecc
Confidence             045666666554333    99998888889999999995 577754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=3e-15  Score=121.59  Aligned_cols=159  Identities=17%  Similarity=0.211  Sum_probs=121.9

Q ss_pred             ccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCC
Q 029543            6 RNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGE   85 (192)
Q Consensus         6 ~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~   85 (192)
                      +.++.|.|.+...++...+|.+++|+.++.. +..-|       +...     +.......+++++++++ ...++.+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p-------~~~~-----~~~aa~~~~~~~a~~~~-~~~~l~~g~  161 (337)
T cd08261          96 RKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVP-------EGLS-----LDQAALVEPLAIGAHAV-RRAGVTAGD  161 (337)
T ss_pred             hCcCcccCCCCCeeeecCCCcceeEEEechh-eEECC-------CCCC-----HHHhhhhchHHHHHHHH-HhcCCCCCC
Confidence            4456677765555555557899999999988 65322       2110     00000123677888888 778899999


Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccH-
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGI-  159 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~-  159 (192)
                      +|||+| +|++|.+++|+|+.+|++|+++++++++.++++ ++|+++++++++. ++.+.+.+.+++ ++    |++|+ 
T Consensus       162 ~vLI~g-~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~-~~g~~~v~~~~~~-~~~~~l~~~~~~~~vd~vld~~g~~  238 (337)
T cd08261         162 TVLVVG-AGPIGLGVIQVAKARGARVIVVDIDDERLEFAR-ELGADDTINVGDE-DVAARLRELTDGEGADVVIDATGNP  238 (337)
T ss_pred             EEEEEC-CCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH-HhCCCEEecCccc-CHHHHHHHHhCCCCCCEEEECCCCH
Confidence            999997 799999999999999999999999999999998 9999999998877 788888777654 45    88874 


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          160 EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ..+..++++++++|+ +.+|...
T Consensus       239 ~~~~~~~~~l~~~G~~i~~g~~~  261 (337)
T cd08261         239 ASMEEAVELVAHGGRVVLVGLSK  261 (337)
T ss_pred             HHHHHHHHHHhcCCEEEEEcCCC
Confidence            688899999999995 5666554

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.66  E-value=7e-15  Score=119.79  Aligned_cols=177  Identities=23%  Similarity=0.228  Sum_probs=130.1

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhh--------c---ccC--------CCcccccCC
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRM--------S---KLD--------TSLFYSFCP   61 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~--------~---~~~--------~~~~~~~~~   61 (192)
                      |++.+.++..  +..++....+.|....++|+|++.++++|+.+....        +   +..        ++....+..
T Consensus         1 m~a~~~~~~~--~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (339)
T cd08249           1 QKAAVLTGPG--GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCDFAGTVVEVGSGVTRFKV   78 (339)
T ss_pred             CceEEeccCC--CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccccCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence            5555554432  555666677778888999999999999988543211        0   000        111111111


Q ss_pred             C------------------C--------------------------CchhHHHHHHHHHHHhCC----------CCCCEE
Q 029543           62 G------------------G--------------------------VIMPSVTAFAGLYEICSP----------KKGEYV   87 (192)
Q Consensus        62 g------------------~--------------------------~~~~~~ta~~~l~~~~~~----------~~g~~V   87 (192)
                      |                  .                          .++++.|||+++.+..++          .++++|
T Consensus        79 Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~v  158 (339)
T cd08249          79 GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPV  158 (339)
T ss_pred             CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEE
Confidence            1                  1                          055789999998665544          789999


Q ss_pred             EEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccH-HHH
Q 029543           88 YVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGI-EYC  162 (192)
Q Consensus        88 lV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~-~~~  162 (192)
                      +|+|++|++|++++|+|+++|++|+.++ ++++.+.++ ++|+++++++++. ++.+.+++.+++++    |++|+ ..+
T Consensus       159 lI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~-~~g~~~v~~~~~~-~~~~~l~~~~~~~~d~vl~~~g~~~~~  235 (339)
T cd08249         159 LIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVK-SLGADAVFDYHDP-DVVEDIRAATGGKLRYALDCISTPESA  235 (339)
T ss_pred             EEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHH-hcCCCEEEECCCc-hHHHHHHHhcCCCeeEEEEeeccchHH
Confidence            9999989999999999999999999888 568899998 8999999998876 78888877665455    88887 899


Q ss_pred             HHHHHhhcC--CCe-EEEeeCCC
Q 029543          163 RSLLLVLLF--RPL-KIMENDSG  182 (192)
Q Consensus       163 ~~~~~~l~~--~G~-v~~G~~~~  182 (192)
                      ..+++++++  +|+ +.+|....
T Consensus       236 ~~~~~~l~~~~~g~~v~~g~~~~  258 (339)
T cd08249         236 QLCAEALGRSGGGKLVSLLPVPE  258 (339)
T ss_pred             HHHHHHHhccCCCEEEEecCCCc
Confidence            999999999  884 67776543

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.66  E-value=2.4e-15  Score=122.90  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=121.8

Q ss_pred             cchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCE
Q 029543            7 NTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEY   86 (192)
Q Consensus         7 ~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~   86 (192)
                      .++.+.|.+....|....|.+++++.++...+..-|......      ....+     .++++|||+++.+...+.++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~------~aa~l-----~~~~~tA~~~~~~~~~~~~~~~  178 (350)
T cd08240         110 AGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPA------LAATL-----ACSGLTAYSAVKKLMPLVADEP  178 (350)
T ss_pred             CcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHH------Heehh-----hchhhhHHHHHHhcccCCCCCE
Confidence            455666666554554467888999999886554322211000      01111     5688999999976666668999


Q ss_pred             EEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc-HH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG-IE  160 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g-~~  160 (192)
                      |+|+| +|++|++++|+||..|+ +|+++++++++.+.++ ++|++.++++++. ++.+.+.+..++++    |++| ..
T Consensus       179 vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~vid~~g~~~  255 (350)
T cd08240         179 VVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAK-AAGADVVVNGSDP-DAAKRIIKAAGGGVDAVIDFVNNSA  255 (350)
T ss_pred             EEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCcEEecCCCc-cHHHHHHHHhCCCCcEEEECCCCHH
Confidence            99997 79999999999999999 7999999999999998 9999999988766 67777776654344    8998 57


Q ss_pred             HHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          161 YCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       161 ~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      .+..++++|+++|+ +.+|..+..
T Consensus       256 ~~~~~~~~l~~~g~~v~~g~~~~~  279 (350)
T cd08240         256 TASLAFDILAKGGKLVLVGLFGGE  279 (350)
T ss_pred             HHHHHHHHhhcCCeEEEECCCCCC
Confidence            89999999999995 567765543

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.66  E-value=4.2e-15  Score=120.87  Aligned_cols=161  Identities=21%  Similarity=0.187  Sum_probs=124.7

Q ss_pred             cchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCE
Q 029543            7 NTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEY   86 (192)
Q Consensus         7 ~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~   86 (192)
                      .++.+.|.+....|...+|.+++++.++...+..-|..   ++..   ....+     +.++.|||+++.. .++.++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~---~~~~---~~a~l-----~~~~~ta~~~~~~-~~~~~~~~  168 (341)
T cd08297         101 TGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDG---LSFE---QAAPL-----LCAGVTVYKALKK-AGLKPGDW  168 (341)
T ss_pred             CCCcccCCCccccccccCCcceeEEEeccccEEECCCC---CCHH---HHHHH-----HcchHHHHHHHHh-cCCCCCCE
Confidence            34566777766667767889999999998776632211   0000   01112     5588999999854 58999999


Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc-HH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG-IE  160 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g-~~  160 (192)
                      |+|+|+++++|++++++|+++|++|+++++++++.+.++ ++|++.++++++. ++.+.+.+.+++ ++    |+.+ +.
T Consensus       169 vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~~~~~~~~~~~vd~vl~~~~~~~  246 (341)
T cd08297         169 VVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK-ELGADAFVDFKKS-DDVEAVKELTGGGGAHAVVVTAVSAA  246 (341)
T ss_pred             EEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCcEEEcCCCc-cHHHHHHHHhcCCCCCEEEEcCCchH
Confidence            999998888999999999999999999999999999998 9999999998876 788888877654 55    5555 67


Q ss_pred             HHHHHHHhhcCCCe-EEEeeCC
Q 029543          161 YCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       161 ~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ....++++++++|+ +.+|..+
T Consensus       247 ~~~~~~~~l~~~g~~v~~g~~~  268 (341)
T cd08297         247 AYEQALDYLRPGGTLVCVGLPP  268 (341)
T ss_pred             HHHHHHHHhhcCCEEEEecCCC
Confidence            88999999999995 5777654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.65  E-value=2.6e-15  Score=121.72  Aligned_cols=160  Identities=21%  Similarity=0.134  Sum_probs=122.9

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      |+.+.++.|.+...+|...+|.+++|+.++...+..-|.....   .   ....+     .++++++|+++.+. ++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~---~---~~a~l-----~~~~~~a~~~~~~~-~~~~~  163 (334)
T PRK13771         96 CRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSD---E---GAVIV-----PCVTGMVYRGLRRA-GVKKG  163 (334)
T ss_pred             hcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCH---H---Hhhcc-----cchHHHHHHHHHhc-CCCCC
Confidence            5677888999888888777899999999998765522211100   0   01111     56889999999555 88999


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc--ccccHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV--DFVGIEY  161 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~--d~~g~~~  161 (192)
                      ++|+|+|++|++|++++|+++..|++|+++++++++.+.++ ++ ++.+++++   ++.+.+++. ++ .+  |++|+..
T Consensus       164 ~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~v~~~-~~~d~~ld~~g~~~  237 (334)
T PRK13771        164 ETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS-KY-ADYVIVGS---KFSEEVKKI-GGADIVIETVGTPT  237 (334)
T ss_pred             CEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HH-HHHhcCch---hHHHHHHhc-CCCcEEEEcCChHH
Confidence            99999998899999999999999999999999999999998 88 77777664   345555554 22 22  9999888


Q ss_pred             HHHHHHhhcCCCe-EEEeeCCC
Q 029543          162 CRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       162 ~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ...++++++++|+ +.+|....
T Consensus       238 ~~~~~~~l~~~G~~v~~g~~~~  259 (334)
T PRK13771        238 LEESLRSLNMGGKIIQIGNVDP  259 (334)
T ss_pred             HHHHHHHHhcCCEEEEEeccCC
Confidence            9999999999995 67887543

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.65  E-value=3.5e-15  Score=124.69  Aligned_cols=102  Identities=17%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhc--------CCC-eeeecCCcccHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC---HVVGSAGSKEKVDLLKNKF--------GFD-DAFNYKEEPDLDV  144 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~~~~--------g~~-~vi~~~~~~~~~~  144 (192)
                      +..++++|++|+|+|++|++|++++|+||++|+   +|++++++++|++.++ ++        |++ .++|+++.+++.+
T Consensus       169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~-~~~~~~~~~~Ga~~~~i~~~~~~~~~~  247 (410)
T cd08238         169 HRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ-RLFPPEAASRGIELLYVNPATIDDLHA  247 (410)
T ss_pred             hhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH-HhccccccccCceEEEECCCccccHHH
Confidence            456788999999999899999999999999754   8999999999999999 76        776 5787764227888


Q ss_pred             HHHhhccC-Cc----cccc-HHHHHHHHHhhcCCC-eEEEee
Q 029543          145 ALKRMFLC-WV----DFVG-IEYCRSLLLVLLFRP-LKIMEN  179 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g-~~~~~~~~~~l~~~G-~v~~G~  179 (192)
                      .+++.+++ ++    |++| ...++.++++++++| +++++.
T Consensus       248 ~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g  289 (410)
T cd08238         248 TLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG  289 (410)
T ss_pred             HHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence            88887765 55    7887 578999999999998 455543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.64  E-value=7.2e-16  Score=108.79  Aligned_cols=92  Identities=23%  Similarity=0.315  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc-HHHHHHHHHh
Q 029543           95 AVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG-IEYCRSLLLV  168 (192)
Q Consensus        95 ~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g-~~~~~~~~~~  168 (192)
                      |+|++++|+||+.|++|++++++++|++.++ ++|+++++|+++. ++.+++++++++ ++    ||+| .+.++.++++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-~~Ga~~~~~~~~~-~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~   78 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-ELGADHVIDYSDD-DFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL   78 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTESEEEETTTS-SHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-hhccccccccccc-ccccccccccccccceEEEEecCcHHHHHHHHHH
Confidence            6899999999999999999999999999999 9999999999988 899999999987 66    9999 7899999999


Q ss_pred             hcCCCe-EEEeeCC-CCCcccc
Q 029543          169 LLFRPL-KIMENDS-GSTPIPF  188 (192)
Q Consensus       169 l~~~G~-v~~G~~~-~~~~~~~  188 (192)
                      ++++|+ +++|..+ ...+++.
T Consensus        79 l~~~G~~v~vg~~~~~~~~~~~  100 (130)
T PF00107_consen   79 LRPGGRIVVVGVYGGDPISFNL  100 (130)
T ss_dssp             EEEEEEEEEESSTSTSEEEEEH
T ss_pred             hccCCEEEEEEccCCCCCCCCH
Confidence            999995 6888876 3344443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.64  E-value=7.3e-14  Score=112.47  Aligned_cols=114  Identities=32%  Similarity=0.379  Sum_probs=97.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||. +.+..+++++++|+|+|++|++|++++|+|+..|++|+++++++++.+.++ ++|++.++++++. ++.+
T Consensus       125 ~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  201 (324)
T cd08244         125 VHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR-ALGADVAVDYTRP-DWPD  201 (324)
T ss_pred             cchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEecCCc-cHHH
Confidence            556777854 446788999999999999999999999999999999999999999999998 9999999988776 7777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+++ ++    |++|+.....++++++++|+ +.+|...
T Consensus       202 ~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~  244 (324)
T cd08244         202 QVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWAS  244 (324)
T ss_pred             HHHHHcCCCCceEEEECCChHhHHHHHHHhccCcEEEEEecCC
Confidence            77776654 55    89998888999999999995 6777654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.63  E-value=1.1e-14  Score=118.50  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=120.5

Q ss_pred             ccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCC
Q 029543            6 RNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGE   85 (192)
Q Consensus         6 ~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~   85 (192)
                      ..+..+.|.+.+..+...+|++++|+.++...+..-|       ....     +..+..+.++.++++++  .....+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp-------~~~~-----~~~a~~~~~~~~a~~~~--~~~~~~g~  163 (340)
T TIGR00692        98 RRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNP-------KSIP-----PEYATIQEPLGNAVHTV--LAGPISGK  163 (340)
T ss_pred             hCcChhhCcCcceEeecCCCcceeEEEeehHHcEECc-------CCCC-----hHhhhhcchHHHHHHHH--HccCCCCC
Confidence            3455667777666666567899999999886655222       2100     11111256788888886  23567899


Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc-
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG-  158 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g-  158 (192)
                      +|+|.| +|++|.+++|+|+.+|++ |+++++++++.+.++ ++|++.++++... ++.+.+.+.+++ ++    |++| 
T Consensus       164 ~vlI~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~~-~~~~~l~~~~~~~~~d~vld~~g~  240 (340)
T TIGR00692       164 SVLVTG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK-KMGATYVVNPFKE-DVVKEVADLTDGEGVDVFLEMSGA  240 (340)
T ss_pred             EEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEEccccc-CHHHHHHHhcCCCCCCEEEECCCC
Confidence            999987 799999999999999995 888988889999888 9999999988776 888888777654 55    8888 


Q ss_pred             HHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          159 IEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       159 ~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ...+...+++++++|+ +.+|....
T Consensus       241 ~~~~~~~~~~l~~~g~~v~~g~~~~  265 (340)
T TIGR00692       241 PKALEQGLQAVTPGGRVSLLGLPPG  265 (340)
T ss_pred             HHHHHHHHHhhcCCCEEEEEccCCC
Confidence            4688899999999995 57776543

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.62  E-value=1.3e-14  Score=117.15  Aligned_cols=165  Identities=24%  Similarity=0.261  Sum_probs=127.9

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      |..+.+|+|......|...+|++.++++++...+.       .+|.... ..   .....+++++++|+++.+..++.++
T Consensus        99 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~-------~~p~~~~-~~---~a~~~~~~~~~a~~~l~~~~~~~~~  167 (342)
T cd08266          99 CLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLL-------PIPDNLS-FE---EAAAAPLTFLTAWHMLVTRARLRPG  167 (342)
T ss_pred             hccccccccccccccccccCcceeEEEEechHHce-------eCCCCCC-HH---HHHhhhhHHHHHHHHHHHhcCCCCC
Confidence            56778899998888887778889999998865444       2222100 00   0011145788999998777889999


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGI  159 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~  159 (192)
                      ++++|+|+++++|++++++++..|++|+.+++++++.+.++ .++.+.+++..+. ++.+.+.+.+.+ ++    |++|.
T Consensus       168 ~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~g~  245 (342)
T cd08266         168 ETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-ELGADYVIDYRKE-DFVREVRELTGKRGVDVVVEHVGA  245 (342)
T ss_pred             CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCeEEecCCh-HHHHHHHHHhCCCCCcEEEECCcH
Confidence            99999999899999999999999999999999999999998 8898888887765 666666665543 44    88888


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          160 EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ..+..++++++++|. +.+|....
T Consensus       246 ~~~~~~~~~l~~~G~~v~~~~~~~  269 (342)
T cd08266         246 ATWEKSLKSLARGGRLVTCGATTG  269 (342)
T ss_pred             HHHHHHHHHhhcCCEEEEEecCCC
Confidence            889999999999994 57776543

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.62  E-value=5.8e-15  Score=119.25  Aligned_cols=154  Identities=23%  Similarity=0.297  Sum_probs=116.2

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |+.|+.++|.+....+...+|++++++.++...+.       .+|..... ....+     ++++.|||+++. ..++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-------~~p~~~~~~~~~~~-----~~~~~~a~~~l~-~~~~~~  162 (325)
T cd08264          96 CLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLF-------KIPDSISDELAASL-----PVAALTAYHALK-TAGLGP  162 (325)
T ss_pred             hcCCCccccCccceeeccCCCceeeEEEcCHHHce-------eCCCCCCHHHhhhh-----hhhhHHHHHHHH-hcCCCC
Confidence            56788899998777777677888999998876544       22221000 01111     557789999994 488999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGI  159 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~  159 (192)
                      |++|+|+|++|++|++++++|+++|++|+++++    .+.++ ++|++++++++   +..+.+++.+ +++    |++|+
T Consensus       163 g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~-~~g~~~~~~~~---~~~~~l~~~~-~~~d~vl~~~g~  233 (325)
T cd08264         163 GETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLK-EFGADEVVDYD---EVEEKVKEIT-KMADVVINSLGS  233 (325)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHH-HhCCCeeecch---HHHHHHHHHh-CCCCEEEECCCH
Confidence            999999998899999999999999999988873    36777 89999988764   3344555554 333    89998


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeC
Q 029543          160 EYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ..+..++++++++|+ +.+|..
T Consensus       234 ~~~~~~~~~l~~~g~~v~~g~~  255 (325)
T cd08264         234 SFWDLSLSVLGRGGRLVTFGTL  255 (325)
T ss_pred             HHHHHHHHhhccCCEEEEEecC
Confidence            899999999999995 577764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.62  E-value=1e-14  Score=118.95  Aligned_cols=147  Identities=22%  Similarity=0.143  Sum_probs=107.5

Q ss_pred             ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHH
Q 029543           19 LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQ   98 (192)
Q Consensus        19 ~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~   98 (192)
                      +|...+|++++|+.++...+.       .+|+... ..   .....++++.|+|+++ ...++.+|++|+|+|++|++|+
T Consensus       125 ~~~~~~g~~~~~~~v~~~~~~-------~ip~~~~-~~---~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~  192 (350)
T cd08274         125 IGSERDGGFAEYTVVPAENAY-------PVNSPLS-DV---ELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGS  192 (350)
T ss_pred             cCCCCCccceEEEEecHHHce-------eCCCCCC-HH---HHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHH
Confidence            443345788888888775444       2222110 00   0011266899999998 7788999999999998899999


Q ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCC
Q 029543           99 LVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRP  173 (192)
Q Consensus        99 ~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G  173 (192)
                      +++|+|+++|++|+++++++ +++.++ ++|++.+++..+. .+.+  .+.+.+ ++    |++|+..++.++++++++|
T Consensus       193 ~~~~~a~~~g~~vi~~~~~~-~~~~~~-~~g~~~~~~~~~~-~~~~--~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G  267 (350)
T cd08274         193 ALVQLAKRRGAIVIAVAGAA-KEEAVR-ALGADTVILRDAP-LLAD--AKALGGEPVDVVADVVGGPLFPDLLRLLRPGG  267 (350)
T ss_pred             HHHHHHHhcCCEEEEEeCch-hhHHHH-hcCCeEEEeCCCc-cHHH--HHhhCCCCCcEEEecCCHHHHHHHHHHhccCC
Confidence            99999999999999998765 888888 9999876665544 4444  334443 55    8999889999999999999


Q ss_pred             e-EEEeeCCC
Q 029543          174 L-KIMENDSG  182 (192)
Q Consensus       174 ~-v~~G~~~~  182 (192)
                      + +.+|...+
T Consensus       268 ~~v~~g~~~~  277 (350)
T cd08274         268 RYVTAGAIAG  277 (350)
T ss_pred             EEEEecccCC
Confidence            4 57776533

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.62  E-value=1.3e-14  Score=119.32  Aligned_cols=143  Identities=20%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHH
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQ  102 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q  102 (192)
                      .|.+++|+.++..++..       +|+.... ....+     +++++|||+++.+...+.++++|+|+| +|++|++++|
T Consensus       139 ~g~~~~~~~~~~~~~~~-------~P~~is~~~aa~l-----~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~  205 (367)
T cd08263         139 MGGLAEYAVVPATALAP-------LPESLDYTESAVL-----GCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQ  205 (367)
T ss_pred             CCcceeEEEechhhEEE-------CCCCCCHHHHhHh-----cchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHH
Confidence            57889999998876663       3322100 11112     568999999997777788999999996 8999999999


Q ss_pred             HHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHH-HHHHHHHhhcCCCe-
Q 029543          103 FAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIE-YCRSLLLVLLFRPL-  174 (192)
Q Consensus       103 ~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~-~~~~~~~~l~~~G~-  174 (192)
                      +|+..|++ |++++.++++.+.++ ++|++.++++++. ++.+.+++..++ ++    |++|+. ....++++++++|+ 
T Consensus       206 lak~~G~~~vi~~~~s~~~~~~~~-~~g~~~v~~~~~~-~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~  283 (367)
T cd08263         206 LAKAFGASPIIAVDVRDEKLAKAK-ELGATHTVNAAKE-DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRA  283 (367)
T ss_pred             HHHHcCCCeEEEEeCCHHHHHHHH-HhCCceEecCCcc-cHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEE
Confidence            99999996 999999999999998 8999999998876 788888777654 54    888876 88999999999995 


Q ss_pred             EEEeeCC
Q 029543          175 KIMENDS  181 (192)
Q Consensus       175 v~~G~~~  181 (192)
                      +.+|..+
T Consensus       284 v~~g~~~  290 (367)
T cd08263         284 VVVGLAP  290 (367)
T ss_pred             EEEccCC
Confidence            5677543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.62  E-value=1.3e-14  Score=119.26  Aligned_cols=162  Identities=14%  Similarity=0.136  Sum_probs=117.4

Q ss_pred             cccchhhhhhhhccccc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |+.|..++|++...++. ..+|++++|+.++...+.       .+|...     ++.......++.++++++ +..++.+
T Consensus       115 c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~-------~~P~~l-----~~~~aa~~~~~~~a~~~~-~~~~~~~  181 (364)
T PLN02702        115 CKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCF-------KLPENV-----SLEEGAMCEPLSVGVHAC-RRANIGP  181 (364)
T ss_pred             hhCcCcccCCCccccCCCCCCCcccceEEcchHHeE-------ECCCCC-----CHHHHhhhhHHHHHHHHH-HhcCCCC
Confidence            45677888887544432 247899999999876554       222210     010101023566788888 7788999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC--CcccHHHHHHhh---ccCCc---
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK--EEPDLDVALKRM---FLCWV---  154 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~--~~~~~~~~i~~~---~~~g~---  154 (192)
                      |++|+|+| +|++|++++|+|+.+|+ .|+++++++++.+.++ ++|++.++++.  ++ ++.+.+.+.   +++++   
T Consensus       182 g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~v  258 (364)
T PLN02702        182 ETNVLVMG-AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK-QLGADEIVLVSTNIE-DVESEVEEIQKAMGGGIDVS  258 (364)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEecCcccc-cHHHHHHHHhhhcCCCCCEE
Confidence            99999997 79999999999999999 5888888899999888 99999887653  34 676666544   22234   


Q ss_pred             -cccc-HHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          155 -DFVG-IEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       155 -d~~g-~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                       |++| ...+..++++++++|+ +.+|...+
T Consensus       259 id~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  289 (364)
T PLN02702        259 FDCVGFNKTMSTALEATRAGGKVCLVGMGHN  289 (364)
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence             8998 5789999999999995 57776543

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.62  E-value=1.6e-14  Score=116.77  Aligned_cols=116  Identities=47%  Similarity=0.541  Sum_probs=101.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh-cCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK-FGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~  143 (192)
                      ++++.|+|+++.+...+.++++|+|+|++|++|++++|+|+..|++|+++++++++.+.++ + +|++.++++++. ++.
T Consensus       127 ~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~  204 (329)
T cd05288         127 GMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLV-EELGFDAAINYKTP-DLA  204 (329)
T ss_pred             ccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hhcCCceEEecCCh-hHH
Confidence            6789999999977778899999999999999999999999999999999999999999998 6 999999998876 777


Q ss_pred             HHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          144 VALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +.+.+.+++++    |++|+..++.++++++++|+ +.+|..+.
T Consensus       205 ~~v~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~  248 (329)
T cd05288         205 EALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQ  248 (329)
T ss_pred             HHHHHhccCCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccC
Confidence            77776654344    89999899999999999995 57886543

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05281 TDH Threonine dehydrogenase

Probab=99.62  E-value=1.4e-14  Score=118.05  Aligned_cols=160  Identities=22%  Similarity=0.201  Sum_probs=121.2

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      ++.++.|+|...++.|...+|+++++++++..++.-       +|....     ...+..++++.++++++.  ....+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~-------lP~~~~-----~~~a~~~~~~~~a~~~~~--~~~~~g  164 (341)
T cd05281          99 CRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWK-------NDKDIP-----PEIASIQEPLGNAVHTVL--AGDVSG  164 (341)
T ss_pred             HHCcCcccCcccceEeccCCCcceEEEEechHHcEE-------CcCCCC-----HHHhhhhhHHHHHHHHHH--hcCCCC
Confidence            456677888777666666678899999998766552       222100     011122557888888873  355789


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG  158 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g  158 (192)
                      ++|+|.| +|++|++++|+|++.|+ +|++++++++|.+.++ ++|++++++++.. ++. .+++.+.+ ++    |++|
T Consensus       165 ~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~-~~~~~~~~~~vd~vld~~g  240 (341)
T cd05281         165 KSVLITG-CGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK-KMGADVVINPREE-DVV-EVKSVTDGTGVDVVLEMSG  240 (341)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCcceeeCcccc-cHH-HHHHHcCCCCCCEEEECCC
Confidence            9999987 69999999999999999 7999988899999998 9999999988766 777 77777664 55    8887


Q ss_pred             H-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          159 I-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       159 ~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      + .....++++++++|+ +.+|....
T Consensus       241 ~~~~~~~~~~~l~~~G~~v~~g~~~~  266 (341)
T cd05281         241 NPKAIEQGLKALTPGGRVSILGLPPG  266 (341)
T ss_pred             CHHHHHHHHHHhccCCEEEEEccCCC
Confidence            4 578899999999995 56775443

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.61  E-value=1.1e-14  Score=117.09  Aligned_cols=159  Identities=23%  Similarity=0.200  Sum_probs=118.0

Q ss_pred             cchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCE
Q 029543            7 NTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEY   86 (192)
Q Consensus         7 ~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~   86 (192)
                      .+..+.|+..+.+|...+|++++|+.++...+..-|       .........     .+.+.+++|+++....++.++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp-------~~~~~~~aa-----~~~~~~~a~~~l~~~~~~~~g~~  167 (306)
T cd08258         100 RGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELP-------ENLSLEAAA-----LTEPLAVAVHAVAERSGIRPGDT  167 (306)
T ss_pred             CcCcccCCCCceeeecCCCceEEEEEcchHHeEECc-------CCCCHHHHH-----hhchHHHHHHHHHHhcCCCCCCE
Confidence            344455655445555567899999999887655222       211000011     14578899999878888999999


Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc-
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSA--GSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG-  158 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g-  158 (192)
                      |+|.| +|++|.+++|+|++.|++|+.+.  +++++.+.++ ++|++.+ ++... ++.+.+.+...+ ++    |++| 
T Consensus       168 vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~-~~~~~l~~~~~~~~vd~vld~~g~  243 (306)
T cd08258         168 VVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAK-ELGADAV-NGGEE-DLAELVNEITDGDGADVVIECSGA  243 (306)
T ss_pred             EEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHH-HhCCccc-CCCcC-CHHHHHHHHcCCCCCCEEEECCCC
Confidence            99987 89999999999999999987763  3456778888 8999888 87766 888888776654 55    8887 


Q ss_pred             HHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          159 IEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       159 ~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +..+...++.++++|+ +.+|..+
T Consensus       244 ~~~~~~~~~~l~~~G~~v~~g~~~  267 (306)
T cd08258         244 VPALEQALELLRKGGRIVQVGIFG  267 (306)
T ss_pred             hHHHHHHHHHhhcCCEEEEEcccC
Confidence            5688899999999995 5788865

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.61  E-value=1.7e-14  Score=116.43  Aligned_cols=144  Identities=20%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHh--C-CCCCCEEEEeCCCchHHHHH
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEIC--S-PKKGEYVYVSAASGAVGQLV  100 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~--~-~~~g~~VlV~Ga~G~iG~~~  100 (192)
                      +|++++|+.++...+..-|...   +..   ....+     ++++.||++++....  . ...+++|+|+|++|++|+++
T Consensus        95 ~g~~~~~~~v~~~~~~~~p~~~---~~~---~a~~~-----~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~  163 (326)
T cd08289          95 HGGYSEYARVPAEWVVPLPKGL---TLK---EAMIL-----GTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLA  163 (326)
T ss_pred             CCcceeEEEEcHHHeEECCCCC---CHH---HHhhh-----hhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHH
Confidence            5777777777765444222110   000   01111     457788888875332  2 33478999999889999999


Q ss_pred             HHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-E
Q 029543          101 GQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-K  175 (192)
Q Consensus       101 ~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v  175 (192)
                      +|+|+++|++|+++++++++.+.++ ++|++.++++++.  ..+.+++..+.++    |++|+..+..++++++++|+ +
T Consensus       164 ~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~--~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~i  240 (326)
T cd08289         164 VSILAKLGYEVVASTGKADAADYLK-KLGAKEVIPREEL--QEESIKPLEKQRWAGAVDPVGGKTLAYLLSTLQYGGSVA  240 (326)
T ss_pred             HHHHHHCCCeEEEEecCHHHHHHHH-HcCCCEEEcchhH--HHHHHHhhccCCcCEEEECCcHHHHHHHHHHhhcCCEEE
Confidence            9999999999999999999999998 9999999887643  2444555543344    89998899999999999995 6


Q ss_pred             EEeeCC
Q 029543          176 IMENDS  181 (192)
Q Consensus       176 ~~G~~~  181 (192)
                      .+|...
T Consensus       241 ~~g~~~  246 (326)
T cd08289         241 VSGLTG  246 (326)
T ss_pred             EEeecC
Confidence            888753

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.61  E-value=1.6e-14  Score=116.92  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=119.9

Q ss_pred             ccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCC
Q 029543            6 RNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGE   85 (192)
Q Consensus         6 ~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~   85 (192)
                      ..++.++|......|....|.+++|+.++...+..       +|......    .....+.+++|||+++.+..++.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------lp~~~~~~----~a~~~~~~~~ta~~~l~~~~~~~~~~  167 (338)
T cd08254          99 RRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVP-------VPDGVPFA----QAAVATDAVLTPYHAVVRAGEVKPGE  167 (338)
T ss_pred             hCcCcccCCCCCccccccCCcceeeEEechHHeEE-------CCCCCCHH----HhhhhcchHHHHHHHHHhccCCCCCC
Confidence            34445566555555666678889999998765542       22210000    00111568999999997777899999


Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc-H
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG-I  159 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g-~  159 (192)
                      +|+|.| +|++|++++++|+..|++|+++++++++.+.++ ++|++.+++..+. .+.+.+ +...+ ++    |++| .
T Consensus       168 ~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~-~~g~~~~~~~~~~-~~~~~~-~~~~~~~~D~vid~~g~~  243 (338)
T cd08254         168 TVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK-ELGADEVLNSLDD-SPKDKK-AAGLGGGFDVIFDFVGTQ  243 (338)
T ss_pred             EEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCCCc-CHHHHH-HHhcCCCceEEEECCCCH
Confidence            999987 799999999999999999999999999999998 8999999887765 666666 34433 44    8887 5


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          160 EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ..++.++++++++|+ +.+|....
T Consensus       244 ~~~~~~~~~l~~~G~~v~~g~~~~  267 (338)
T cd08254         244 PTFEDAQKAVKPGGRIVVVGLGRD  267 (338)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCCC
Confidence            688999999999995 56776543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.61  E-value=1.3e-13  Score=110.99  Aligned_cols=114  Identities=22%  Similarity=0.245  Sum_probs=88.3

Q ss_pred             chhHHHHHHHHHHHhCC--C-CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLYEICSP--K-KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~--~-~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      ++.+.|+|++++...+.  . .+++|+|+|++|++|++++|+|+.+|++|+++++++++++.++ ++|++.++++++. .
T Consensus       125 ~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~  202 (325)
T cd05280         125 GTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLK-SLGASEVLDREDL-L  202 (325)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEcchhH-H
Confidence            45667888887544333  4 3579999998899999999999999999999999999999998 9999999886532 1


Q ss_pred             HHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          142 LDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       142 ~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                       .+..+....+++    |++|+..+..++++++++|+ +.+|...
T Consensus       203 -~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~  246 (325)
T cd05280         203 -DESKKPLLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAA  246 (325)
T ss_pred             -HHHHHHhcCCCccEEEECCchHHHHHHHHhhcCCCEEEEEecCC
Confidence             122222222233    89998999999999999995 5778654

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.61  E-value=2.1e-14  Score=112.39  Aligned_cols=156  Identities=31%  Similarity=0.335  Sum_probs=116.4

Q ss_pred             hhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           12 LCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        12 ~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      .|.+....+...+|.+++|+.++...+..       +|.... ..   .....++++.|||+++.+...+.++++|+|+|
T Consensus        74 ~~~~~~~~~~~~~g~~~~~~~v~~~~~~~-------ip~~~~-~~---~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g  142 (271)
T cd05188          74 LCPGGGILGEGLDGGFAEYVVVPADNLVP-------LPDGLS-LE---EAALLPEPLATAYHALRRAGVLKPGDTVLVLG  142 (271)
T ss_pred             hCCCCCEeccccCCcceEEEEechHHeEE-------CCCCCC-HH---HhhHhcCHHHHHHHHHHhccCCCCCCEEEEEC
Confidence            35555555666688889999988765552       222100 00   00111468999999997766678999999999


Q ss_pred             CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccH-HHHHHH
Q 029543           92 ASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGI-EYCRSL  165 (192)
Q Consensus        92 a~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~-~~~~~~  165 (192)
                      +++ +|++++++++..|.+|+++++++++.+.++ ++|++.++++.+. +..+.+. ...+ ++    |+++. .....+
T Consensus       143 ~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~  218 (271)
T cd05188         143 AGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAK-ELGADHVIDYKEE-DLEEELR-LTGGGGADVVIDAVGGPETLAQA  218 (271)
T ss_pred             CCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCceeccCCcC-CHHHHHH-HhcCCCCCEEEECCCCHHHHHHH
Confidence            655 999999999999999999999999999998 8999998887766 6666655 3332 44    88887 788999


Q ss_pred             HHhhcCCCe-EEEeeCCC
Q 029543          166 LLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       166 ~~~l~~~G~-v~~G~~~~  182 (192)
                      +++++++|+ +.+|....
T Consensus       219 ~~~l~~~G~~v~~~~~~~  236 (271)
T cd05188         219 LRLLRPGGRIVVVGGTSG  236 (271)
T ss_pred             HHhcccCCEEEEEccCCC
Confidence            999999995 57776544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.61  E-value=2.8e-14  Score=115.24  Aligned_cols=163  Identities=21%  Similarity=0.197  Sum_probs=123.2

Q ss_pred             ccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCC
Q 029543            6 RNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGE   85 (192)
Q Consensus         6 ~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~   85 (192)
                      +.+..+.|......|...+|++++++.++...+..       ++... +..   .....++++++||+++.+...+.+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------lp~~~-~~~---~a~~~~~~~~~a~~~l~~~~~~~~g~  162 (336)
T cd08276          94 LDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVR-------APDHL-SFE---EAATLPCAGLTAWNALFGLGPLKPGD  162 (336)
T ss_pred             ccccccccccccccccccCceeeeEEEecHHHeEE-------CCCCC-CHH---HhhhhhHHHHHHHHHHHhhcCCCCCC
Confidence            44455566555455555577888888887655442       22210 000   00111568899999987777899999


Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-cccHHHHHHhhccC-Cc----ccccH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKE-EPDLDVALKRMFLC-WV----DFVGI  159 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~i~~~~~~-g~----d~~g~  159 (192)
                      +|+|+| +|++|+++++++++.|++|+++++++++.+.++ ++|.+.+++... . ++.+.+++.+.+ ++    |++++
T Consensus       163 ~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~  239 (336)
T cd08276         163 TVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAK-ALGADHVINYRTTP-DWGEEVLKLTGGRGVDHVVEVGGP  239 (336)
T ss_pred             EEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEcCCccc-CHHHHHHHHcCCCCCcEEEECCCh
Confidence            999996 899999999999999999999999999999999 799999998776 4 788888877764 55    88888


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          160 EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .....++++++++|+ +.+|..+.
T Consensus       240 ~~~~~~~~~l~~~G~~v~~g~~~~  263 (336)
T cd08276         240 GTLAQSIKAVAPGGVISLIGFLSG  263 (336)
T ss_pred             HHHHHHHHhhcCCCEEEEEccCCC
Confidence            889999999999995 67886544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.60  E-value=2.6e-14  Score=116.30  Aligned_cols=158  Identities=20%  Similarity=0.235  Sum_probs=117.9

Q ss_pred             hhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEE
Q 029543            9 SKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVY   88 (192)
Q Consensus         9 ~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~Vl   88 (192)
                      ....|.....+|...+|.+++|+.++...+..-|       ...     ++..+....+++|||+++ ...++.++++|+
T Consensus        98 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP-------~~~-----~~~~aa~~~~~~ta~~~l-~~~~~~~~~~vl  164 (343)
T cd08236          98 EYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIP-------DHV-----DYEEAAMIEPAAVALHAV-RLAGITLGDTVV  164 (343)
T ss_pred             ChhhCCCcceEecccCCcccceEEechHHeEECc-------CCC-----CHHHHHhcchHHHHHHHH-HhcCCCCCCEEE
Confidence            3444444444555567899999999987665322       211     011111123678999999 477899999999


Q ss_pred             EeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccH-HH
Q 029543           89 VSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGI-EY  161 (192)
Q Consensus        89 V~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~-~~  161 (192)
                      |+| +|.+|.+++|+|+.+|++ |+++++++++.+.++ ++|++.++++++. . .+.+++..++ ++    |++|+ ..
T Consensus       165 I~g-~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~-~~g~~~~~~~~~~-~-~~~~~~~~~~~~~d~vld~~g~~~~  240 (343)
T cd08236         165 VIG-AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR-ELGADDTINPKEE-D-VEKVRELTEGRGADLVIEAAGSPAT  240 (343)
T ss_pred             EEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEecCccc-c-HHHHHHHhCCCCCCEEEECCCCHHH
Confidence            997 799999999999999996 999999999999998 8999999998776 6 6666666554 45    88874 68


Q ss_pred             HHHHHHhhcCCCe-EEEeeCCCC
Q 029543          162 CRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       162 ~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      +..++++++++|+ +.+|...+.
T Consensus       241 ~~~~~~~l~~~G~~v~~g~~~~~  263 (343)
T cd08236         241 IEQALALARPGGKVVLVGIPYGD  263 (343)
T ss_pred             HHHHHHHhhcCCEEEEEcccCCC
Confidence            8899999999995 577755443

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.60  E-value=1.9e-14  Score=117.06  Aligned_cols=162  Identities=17%  Similarity=0.193  Sum_probs=119.8

Q ss_pred             cccchhhhhhhhccc-------cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHH
Q 029543            5 IRNTSKRLCKIQNIL-------KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLY   76 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~-------g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~   76 (192)
                      |+.+..|+|++....       +...+|.+++|+.++...+.       .+|..... ....+     .+++.|||+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-------~lp~~~~~~~aa~l-----~~~~~ta~~~~~  163 (337)
T cd05283          96 CKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVF-------KIPEGLDSAAAAPL-----LCAGITVYSPLK  163 (337)
T ss_pred             ccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheE-------ECCCCCCHHHhhhh-----hhHHHHHHHHHH
Confidence            567788889876543       33457899999999987655       22221100 11112     568899999984


Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc--
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV--  154 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~--  154 (192)
                       ...+.+|++++|.| .|++|++++|+++..|++|+++++++++.+.++ ++|++.+++.+.. ++.+..    ..++  
T Consensus       164 -~~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~-~~~~~~----~~~~d~  235 (337)
T cd05283         164 -RNGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL-KLGADEFIATKDP-EAMKKA----AGSLDL  235 (337)
T ss_pred             -hcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEecCcch-hhhhhc----cCCceE
Confidence             45689999999987 899999999999999999999999999999998 9999999887654 433221    2233  


Q ss_pred             --ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcc
Q 029543          155 --DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPI  186 (192)
Q Consensus       155 --d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~  186 (192)
                        |++|.. ....++++++++|+ +.+|......++
T Consensus       236 v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  271 (337)
T cd05283         236 IIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPV  271 (337)
T ss_pred             EEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCcc
Confidence              888876 58999999999995 578876544333

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.60  E-value=2.6e-13  Score=109.99  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=94.0

Q ss_pred             chhHHHHHHHHHHHhCCCC-----CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 029543           65 IMPSVTAFAGLYEICSPKK-----GEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFDDAFNYKE  138 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~-----g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~  138 (192)
                      ++++.|+|+++.+...+.+     |++|+|+|++|++|++++|+|+.+| ++|+++++++++.+.++ ++|++.++++.+
T Consensus       126 ~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  204 (336)
T cd08252         126 PLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVK-ELGADHVINHHQ  204 (336)
T ss_pred             hhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHH-hcCCcEEEeCCc
Confidence            5567889998877778877     9999999989999999999999999 89999999999999998 999999998763


Q ss_pred             cccHHHHHHhhccCCc----cccc-HHHHHHHHHhhcCCCe-EEEeeC
Q 029543          139 EPDLDVALKRMFLCWV----DFVG-IEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       139 ~~~~~~~i~~~~~~g~----d~~g-~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                        ++.+.++.....++    |++| ...+..++++++++|+ +.+|..
T Consensus       205 --~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~  250 (336)
T cd08252         205 --DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDP  250 (336)
T ss_pred             --cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCC
Confidence              56666664432344    8888 4789999999999995 567754

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.60  E-value=2.4e-14  Score=116.52  Aligned_cols=161  Identities=20%  Similarity=0.145  Sum_probs=119.6

Q ss_pred             ccchhhhhhhhccc---cccCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHh
Q 029543            6 RNTSKRLCKIQNIL---KQNAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEIC   79 (192)
Q Consensus         6 ~~g~~~~C~~~~~~---g~~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~   79 (192)
                      +++..++|++....   +...+|.+++|+.++..  ++..       +|..... ....+     +++++|||+++ ...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~-------lP~~~~~~~aa~l-----~~~~~ta~~~~-~~~  163 (347)
T cd05278          97 RRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAK-------IPDGLPDEDALML-----SDILPTGFHGA-ELA  163 (347)
T ss_pred             hCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEE-------CCCCCCHHHHhhh-----cchhhheeehh-hhc
Confidence            34555566553311   22346888999999875  4442       2221000 11112     56889999998 678


Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc---
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV---  154 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~---  154 (192)
                      ++.+|++|+|.| +|++|.+++|+||.+|+ +|+++++++++.+.++ ++|++.+++++++ ++.+.+++.+++ ++   
T Consensus       164 ~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~-~~~~~i~~~~~~~~~d~v  240 (347)
T cd05278         164 GIKPGSTVAVIG-AGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK-EAGATDIINPKNG-DIVEQILELTGGRGVDCV  240 (347)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HhCCcEEEcCCcc-hHHHHHHHHcCCCCCcEE
Confidence            899999999987 79999999999999997 8999998999999998 9999999998876 788888776654 55   


Q ss_pred             -ccccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          155 -DFVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       155 -d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                       |++|+ ..+..++++++++|+ +.+|...+
T Consensus       241 ld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  271 (347)
T cd05278         241 IEAVGFEETFEQAVKVVRPGGTIANVGVYGK  271 (347)
T ss_pred             EEccCCHHHHHHHHHHhhcCCEEEEEcCCCC
Confidence             88886 688999999999995 56775543

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08251 polyketide_synthase polyketide synthase

Probab=99.59  E-value=4e-13  Score=106.71  Aligned_cols=113  Identities=24%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +.+++|+|+++ +..++.+|++|+|+|++|++|++++|+++++|++|+++++++++.+.++ ++|++.+++.... ++.+
T Consensus       103 ~~~~~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  179 (303)
T cd08251         103 PVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-QLGVPHVINYVEE-DFEE  179 (303)
T ss_pred             HHHHHHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCCc-cHHH
Confidence            56788999998 5788999999999999999999999999999999999999999999998 8999999998776 7888


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .+++.+++ ++    |++++.....++++++++|+ +.+|..
T Consensus       180 ~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~  221 (303)
T cd08251         180 EIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMT  221 (303)
T ss_pred             HHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEecc
Confidence            88877765 55    88888889999999999995 566654

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.59  E-value=4.2e-14  Score=116.80  Aligned_cols=146  Identities=21%  Similarity=0.136  Sum_probs=108.3

Q ss_pred             CCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHH
Q 029543           23 AAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLV  100 (192)
Q Consensus        23 ~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~  100 (192)
                      .+|++++|+.++..  .+.       .+|+..... ..-......++++|+|+++ ...++.+|++|+|.| .|++|+++
T Consensus       123 ~~g~~a~y~~v~~~~~~~~-------~lP~~~~~~-~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vg~~~  192 (375)
T cd08282         123 YGGGQAEYLRVPYADFNLL-------KLPDRDGAK-EKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFG-AGPVGLMA  192 (375)
T ss_pred             CCCeeeeEEEeecccCcEE-------ECCCCCChh-hhhheeeecchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHH
Confidence            46889999999864  343       222210000 0000111156889999999 788999999999987 79999999


Q ss_pred             HHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHH------------HHH
Q 029543          101 GQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIE------------YCR  163 (192)
Q Consensus       101 ~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~------------~~~  163 (192)
                      +|+|+++|+ +|++++++++|.+.++ ++|+ ..++++++ ++.+.+.+.+++++    |++|+.            .+.
T Consensus       193 ~~~a~~~G~~~vi~~~~~~~~~~~~~-~~g~-~~v~~~~~-~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~  269 (375)
T cd08282         193 AYSAILRGASRVYVVDHVPERLDLAE-SIGA-IPIDFSDG-DPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLN  269 (375)
T ss_pred             HHHHHHcCCCEEEEECCCHHHHHHHH-HcCC-eEeccCcc-cHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHH
Confidence            999999998 8999999999999999 9998 45777766 77777777654333    888865            488


Q ss_pred             HHHHhhcCCCe-EEEeeCC
Q 029543          164 SLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       164 ~~~~~l~~~G~-v~~G~~~  181 (192)
                      .++++++++|+ +.+|..+
T Consensus       270 ~~~~~l~~~g~~~~~g~~~  288 (375)
T cd08282         270 QLIRVTRPGGGIGIVGVYV  288 (375)
T ss_pred             HHHHHhhcCcEEEEEeccC
Confidence            99999999995 4667643

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.59  E-value=3.2e-13  Score=107.72  Aligned_cols=115  Identities=34%  Similarity=0.400  Sum_probs=99.6

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +.++.++++++.+..++.+|++|+|+|++|++|++++++++.+|++|+++++++++.+.++ ++|++.+++.... ++.+
T Consensus       118 ~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  195 (320)
T cd05286         118 LLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR-AAGADHVINYRDE-DFVE  195 (320)
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HCCCCEEEeCCch-hHHH
Confidence            5677888988877788999999999999999999999999999999999999999999998 8999999887765 7777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+++.+.+ ++    |++|+.....++++++++|+ +.+|...
T Consensus       196 ~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~  238 (320)
T cd05286         196 RVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNAS  238 (320)
T ss_pred             HHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEecCC
Confidence            78777654 55    88888888999999999995 5777644

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.59  E-value=6.9e-14  Score=112.67  Aligned_cols=107  Identities=15%  Similarity=0.045  Sum_probs=78.8

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .+++.|||+++.+ . ..++++|+|+| +|++|++++|+||++|++ |++++++++|++.++ +   +.++|+.+  +  
T Consensus       128 ~~~~~~a~~~~~~-~-~~~~~~vlV~G-~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~-~---~~~i~~~~--~--  196 (308)
T TIGR01202       128 LALAATARHAVAG-A-EVKVLPDLIVG-HGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT-G---YEVLDPEK--D--  196 (308)
T ss_pred             hhHHHHHHHHHHh-c-ccCCCcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh-h---ccccChhh--c--
Confidence            3467899999944 3 34689999998 899999999999999995 667787888877766 4   34565432  1  


Q ss_pred             HHHHhhccCCc----ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          144 VALKRMFLCWV----DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                            .+.++    |++|+. .++.++++++++|+ +++|...++.++++
T Consensus       197 ------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  241 (308)
T TIGR01202       197 ------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDF  241 (308)
T ss_pred             ------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCccccc
Confidence                  11122    999974 78999999999995 57887655444443

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.59  E-value=4.7e-13  Score=107.12  Aligned_cols=115  Identities=30%  Similarity=0.387  Sum_probs=99.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.+||+++.+..++.+|++|+|+|++|++|++++++++..|++|+++++++++.+.++ ++|++.+++.... ++.+
T Consensus       126 ~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  203 (325)
T cd08253         126 GIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QAGADAVFNYRAE-DLAD  203 (325)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCc-CHHH
Confidence            5678899999877788999999999999999999999999999999999999999999998 8999999988766 7777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+++.+.+ ++    |++|+...+..+++++++|. +.+|...
T Consensus       204 ~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~  246 (325)
T cd08253         204 RILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGG  246 (325)
T ss_pred             HHHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeecC
Confidence            77776654 55    88888888889999999994 5777643

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.59  E-value=3.5e-14  Score=117.79  Aligned_cols=144  Identities=20%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CCCCCCeEEEEEE--EeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHH
Q 029543           24 AEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLV  100 (192)
Q Consensus        24 ~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~  100 (192)
                      +|.+++|++++..  .+.       .+|+.... ....+     +++++|||+++ +..++.+|++|+|+| +|++|+++
T Consensus       135 ~g~~~~~~~v~~~~~~~~-------~lp~~~~~~~aa~l-----~~~~~ta~~~l-~~~~~~~g~~VlV~g-~G~vG~~~  200 (386)
T cd08283         135 AGGQAEYVRVPFADVGPF-------KIPDDLSDEKALFL-----SDILPTGYHAA-ELAEVKPGDTVAVWG-CGPVGLFA  200 (386)
T ss_pred             CCeeEEEEEcccccCeEE-------ECCCCCCHHHHhhh-----ccchhhhHHHH-hhccCCCCCEEEEEC-CCHHHHHH
Confidence            6888999999876  443       22221100 11111     55889999999 788999999999997 79999999


Q ss_pred             HHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccH---------------
Q 029543          101 GQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGI---------------  159 (192)
Q Consensus       101 ~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~---------------  159 (192)
                      +|+|++.|+ +|+++++++++.+.++ +++...++++..++++.+.+++.+.+ ++    |++|+               
T Consensus       201 ~~la~~~g~~~vi~~~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~  279 (386)
T cd08283         201 ARSAKLLGAERVIAIDRVPERLEMAR-SHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALL  279 (386)
T ss_pred             HHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCccccccccccccccc
Confidence            999999998 6999999999999999 77444677776541377778777654 45    88874               


Q ss_pred             -------HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          160 -------EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       160 -------~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                             ..++.++++++++|+ +.+|....
T Consensus       280 ~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~  310 (386)
T cd08283         280 KLETDRPDALREAIQAVRKGGTVSIIGVYGG  310 (386)
T ss_pred             ccccCchHHHHHHHHHhccCCEEEEEcCCCC
Confidence                   367889999999995 57776544

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.59  E-value=2.5e-13  Score=109.49  Aligned_cols=113  Identities=22%  Similarity=0.198  Sum_probs=88.7

Q ss_pred             chhHHHHHHHHHHH--hCCCCCC-EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLYEI--CSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~~~--~~~~~g~-~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      +.++.++++++...  ..+.+|+ +|+|+|++|++|.+++|+|+++|++++++++++++.+.++ ++|++.+++.++. +
T Consensus       124 ~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~-~  201 (323)
T TIGR02823       124 GTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLK-ELGASEVIDREDL-S  201 (323)
T ss_pred             hhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-hcCCcEEEccccH-H
Confidence            34566777666433  3478898 9999998899999999999999999999988999999998 9999998887543 3


Q ss_pred             HHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          142 LDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       142 ~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .  .++....+++    |++|++.+..++++++++|+ +.+|...
T Consensus       202 ~--~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  244 (323)
T TIGR02823       202 P--PGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAG  244 (323)
T ss_pred             H--HHHHhcCCCceEEEECccHHHHHHHHHHhCCCCEEEEEcccC
Confidence            2  3444433223    99998889999999999994 6888654

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.59  E-value=6.4e-14  Score=115.19  Aligned_cols=143  Identities=17%  Similarity=0.128  Sum_probs=113.6

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHH
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQ  102 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q  102 (192)
                      .|.+++|++++..++..       +|+.... ....+     +++++|||+++.+..++.+|++|+|+| +|++|+++++
T Consensus       134 ~g~~~~~~~~~~~~~~~-------lp~~~~~~~aa~~-----~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~  200 (363)
T cd08279         134 LGTFAEYTVVPEASVVK-------IDDDIPLDRAALL-----GCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQ  200 (363)
T ss_pred             CccceeeEEeccccEEE-------CCCCCChHHeehh-----cchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHH
Confidence            57889999999877663       2322100 11111     557899999987788899999999996 7999999999


Q ss_pred             HHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cccc-HHHHHHHHHhhcCCCe-
Q 029543          103 FAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVG-IEYCRSLLLVLLFRPL-  174 (192)
Q Consensus       103 ~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g-~~~~~~~~~~l~~~G~-  174 (192)
                      +|+..|++ |+++++++++.+.++ ++|++++++.+.. ++.+.+++.+.+ ++    |++| ...+..++++++++|+ 
T Consensus       201 lak~~G~~~Vi~~~~~~~~~~~~~-~~g~~~vv~~~~~-~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~  278 (363)
T cd08279         201 GARIAGASRIIAVDPVPEKLELAR-RFGATHTVNASED-DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTA  278 (363)
T ss_pred             HHHHcCCCcEEEEcCCHHHHHHHH-HhCCeEEeCCCCc-cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeE
Confidence            99999995 999999999999998 9999999988876 788888777643 45    8888 5688999999999995 


Q ss_pred             EEEeeCC
Q 029543          175 KIMENDS  181 (192)
Q Consensus       175 v~~G~~~  181 (192)
                      +.+|...
T Consensus       279 v~~g~~~  285 (363)
T cd08279         279 VVVGMGP  285 (363)
T ss_pred             EEEecCC
Confidence            5777654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.58  E-value=3.2e-13  Score=108.22  Aligned_cols=112  Identities=18%  Similarity=0.116  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           66 MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        66 ~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      .+++++++++. ..+++++++|+|+| +|++|.+++|+|+..|++ |+++++++++.+.++ ++|++.+++++.. ++.+
T Consensus       113 ~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  188 (312)
T cd08269         113 EPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDRRPARLALAR-ELGATEVVTDDSE-AIVE  188 (312)
T ss_pred             hhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCceEecCCCc-CHHH
Confidence            67788888884 78899999999997 799999999999999997 999999999999888 9999999987665 7888


Q ss_pred             HHHhhccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+.+ ++    |++|+ .....++++++++|+ +.+|..+
T Consensus       189 ~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~  232 (312)
T cd08269         189 RVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQ  232 (312)
T ss_pred             HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCC
Confidence            88877664 55    88874 578899999999995 5777653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.58  E-value=5.4e-13  Score=106.57  Aligned_cols=115  Identities=30%  Similarity=0.351  Sum_probs=98.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.++|+++.+...+.++++|+|+|++|++|++++++++..|++|+++++++++.+.++ ++|++.+++.... ++.+
T Consensus       121 ~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  198 (323)
T cd05276         121 PEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-ALGADVAINYRTE-DFAE  198 (323)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCch-hHHH
Confidence            5678899999877778899999999999999999999999999999999999999999998 8999888888766 7777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+.+ ++    |++|+..+..++++++++|+ +.+|..+
T Consensus       199 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~  241 (323)
T cd05276         199 EVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLG  241 (323)
T ss_pred             HHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEEEEEecCC
Confidence            77766544 44    89998888899999999995 5677643

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.58  E-value=6.8e-14  Score=114.02  Aligned_cols=146  Identities=14%  Similarity=0.024  Sum_probs=110.8

Q ss_pred             cCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHH
Q 029543           22 NAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQ   98 (192)
Q Consensus        22 ~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~   98 (192)
                      ...|.+++|+.++..  .+.       .+|..... ....+     +++++|||+++....++.+|++|+|.| +|++|.
T Consensus       114 ~~~g~~~~~~~v~~~~~~~~-------~lp~~~~~~~aa~l-----~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~~g~  180 (345)
T cd08286         114 LIDGTQAEYVRIPHADNSLY-------KLPEGVDEEAAVML-----SDILPTGYECGVLNGKVKPGDTVAIVG-AGPVGL  180 (345)
T ss_pred             ccCCeeeeEEEcccccCceE-------ECCCCCCHHHhhhc-----cchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHH
Confidence            345788899999865  333       22221000 11111     557899998776777899999999998 699999


Q ss_pred             HHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccH-HHHHHHHHhhcC
Q 029543           99 LVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGI-EYCRSLLLVLLF  171 (192)
Q Consensus        99 ~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~  171 (192)
                      +++|+||.+| .+|++++++++|.+.++ ++|++.++++.+. ++.+.+.+.+.+ ++    |++|. ..++.+++.+++
T Consensus       181 ~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~  258 (345)
T cd08286         181 AALLTAQLYSPSKIIMVDLDDNRLEVAK-KLGATHTVNSAKG-DAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAP  258 (345)
T ss_pred             HHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCceeccccc-cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccC
Confidence            9999999999 59999999999999998 9999999998876 777777776654 45    88884 588889999999


Q ss_pred             CCe-EEEeeCCC
Q 029543          172 RPL-KIMENDSG  182 (192)
Q Consensus       172 ~G~-v~~G~~~~  182 (192)
                      +|+ +.+|....
T Consensus       259 ~g~~v~~g~~~~  270 (345)
T cd08286         259 GGHIANVGVHGK  270 (345)
T ss_pred             CcEEEEecccCC
Confidence            995 57776543

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.57  E-value=3.5e-13  Score=109.86  Aligned_cols=111  Identities=25%  Similarity=0.345  Sum_probs=90.2

Q ss_pred             chhHHHHHHHHHHHhCCCC----CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcc
Q 029543           65 IMPSVTAFAGLYEICSPKK----GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP  140 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~----g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~  140 (192)
                      ++++.|+|+++.+...+.+    |++|+|+|++|++|++++++|+++|++|++++++ ++.+.++ ++|++.+++..+. 
T Consensus       140 ~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~~-  216 (350)
T cd08248         140 PYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVK-SLGADDVIDYNNE-  216 (350)
T ss_pred             hhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHH-HhCCceEEECCCh-
Confidence            5678899999866666654    9999999999999999999999999999988865 6777888 9999999988765 


Q ss_pred             cHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          141 DLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       141 ~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ++.+.+...  .++    |++|+.....++++++++|+ +.+|..
T Consensus       217 ~~~~~l~~~--~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  259 (350)
T cd08248         217 DFEEELTER--GKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSP  259 (350)
T ss_pred             hHHHHHHhc--CCCCEEEECCChHHHHHHHHHhccCCEEEEecCC
Confidence            666555432  233    89998899999999999995 567643

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.57  E-value=6.1e-14  Score=113.21  Aligned_cols=160  Identities=23%  Similarity=0.206  Sum_probs=121.3

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      ++.+..++|++....|...+|.+++|+.++...+..       +|+.... ....+     ++++.|||+++.. .++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~-------ip~~~~~~~~~~~-----~~~~~ta~~~l~~-~~~~~  162 (332)
T cd08259          96 CLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVK-------LPDNVSDESAALA-----ACVVGTAVHALKR-AGVKK  162 (332)
T ss_pred             hhCCCcccCCCccccccccCCeeeeEEEechhheEE-------CCCCCCHHHHhhh-----ccHHHHHHHHHHH-hCCCC
Confidence            456677889887677777788999999998765552       2221000 01111     5688999999965 88999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc-ccccHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV-DFVGIEY  161 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~-d~~g~~~  161 (192)
                      +++++|+|++|++|++++++++..|++|+++++++++.+.++ ++|.+.+++..   ++.+.+.+..+- .+ |++|...
T Consensus       163 ~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~d~v~~~~g~~~  238 (332)
T cd08259         163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILK-ELGADYVIDGS---KFSEDVKKLGGADVVIELVGSPT  238 (332)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCcEEEecH---HHHHHHHhccCCCEEEECCChHH
Confidence            999999999999999999999999999999999999999998 89988887654   355555544311 22 8999888


Q ss_pred             HHHHHHhhcCCCe-EEEeeCC
Q 029543          162 CRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       162 ~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ...++++++++|+ +.+|...
T Consensus       239 ~~~~~~~~~~~g~~v~~g~~~  259 (332)
T cd08259         239 IEESLRSLNKGGRLVLIGNVT  259 (332)
T ss_pred             HHHHHHHhhcCCEEEEEcCCC
Confidence            8999999999994 5676543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.56  E-value=1e-13  Score=112.24  Aligned_cols=156  Identities=21%  Similarity=0.231  Sum_probs=114.6

Q ss_pred             hhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEE
Q 029543            9 SKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVY   88 (192)
Q Consensus         9 ~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~Vl   88 (192)
                      ..++|......|...+|.+++|+.++...+..-|       ...     ++..+...+++.++++++ +..++.+|++|+
T Consensus        98 ~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP-------~~~-----~~~~aa~~~~~~~a~~~l-~~~~~~~g~~vl  164 (334)
T cd08234          98 RPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIP-------DNL-----SFEEAALAEPLSCAVHGL-DLLGIKPGDSVL  164 (334)
T ss_pred             ChhhCCCcceeccCCCCcceeEEEecHHHcEECc-------CCC-----CHHHHhhhhHHHHHHHHH-HhcCCCCCCEEE
Confidence            3455555554555567889999999887655222       210     010111134778999998 778999999999


Q ss_pred             EeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc-HHHH
Q 029543           89 VSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG-IEYC  162 (192)
Q Consensus        89 V~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g-~~~~  162 (192)
                      |+| +|.+|.+++++|++.|++ |+++++++++.+.++ ++|++.++++.+. ++.+. +...+.++    |++| ....
T Consensus       165 I~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~-~~~~~~~vd~v~~~~~~~~~~  240 (334)
T cd08234         165 VFG-AGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK-KLGATETVDPSRE-DPEAQ-KEDNPYGFDVVIEATGVPKTL  240 (334)
T ss_pred             EEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCeEEecCCCC-CHHHH-HHhcCCCCcEEEECCCChHHH
Confidence            998 799999999999999996 899999999999998 9999988888765 55544 32222244    8887 5688


Q ss_pred             HHHHHhhcCCCe-EEEeeCC
Q 029543          163 RSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       163 ~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ..++++++++|+ +.+|...
T Consensus       241 ~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         241 EQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             HHHHHHHhcCCEEEEEecCC
Confidence            899999999995 5777654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.56  E-value=5.4e-14  Score=113.39  Aligned_cols=155  Identities=19%  Similarity=0.146  Sum_probs=108.9

Q ss_pred             chhhhhhhhccccc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCE
Q 029543            8 TSKRLCKIQNILKQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEY   86 (192)
Q Consensus         8 g~~~~C~~~~~~g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~   86 (192)
                      +..+.|...+..+. ..+|++++|+.++...+.       .+|+..     ++..+....+..++++.+ +..++.+|++
T Consensus        92 ~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~-------~lP~~~-----~~~~aa~~~~~~~~~~~~-~~~~~~~g~~  158 (319)
T cd08242          92 GLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLH-------VVPDLV-----PDEQAVFAEPLAAALEIL-EQVPITPGDK  158 (319)
T ss_pred             cCcccCCCCcccCccCCCCceEEEEEechHHeE-------ECcCCC-----CHHHhhhhhHHHHHHHHH-HhcCCCCCCE
Confidence            33455665555554 357888999999876554       233221     011111013556677666 7788999999


Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccH-HH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGI-EY  161 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~-~~  161 (192)
                      |+|+| +|++|++++|+|+.+|++|+++++++++.+.++ ++|++.+++++++         ..+.++    |++|+ ..
T Consensus       159 vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~---------~~~~~~d~vid~~g~~~~  227 (319)
T cd08242         159 VAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAE---------SEGGGFDVVVEATGSPSG  227 (319)
T ss_pred             EEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCcccc---------ccCCCCCEEEECCCChHH
Confidence            99998 899999999999999999999999999999999 8999988776431         111133    89985 58


Q ss_pred             HHHHHHhhcCCCeE-EEeeCCCCCcc
Q 029543          162 CRSLLLVLLFRPLK-IMENDSGSTPI  186 (192)
Q Consensus       162 ~~~~~~~l~~~G~v-~~G~~~~~~~~  186 (192)
                      +..++++++++|++ .++.......+
T Consensus       228 ~~~~~~~l~~~g~~v~~~~~~~~~~~  253 (319)
T cd08242         228 LELALRLVRPRGTVVLKSTYAGPASF  253 (319)
T ss_pred             HHHHHHHhhcCCEEEEEcccCCCCcc
Confidence            88999999999954 55544333333

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>smart00829 PKS_ER Enoylreductase

Probab=99.56  E-value=1.5e-13  Score=108.04  Aligned_cols=114  Identities=27%  Similarity=0.324  Sum_probs=99.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--CeeeecCCcccH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF--DDAFNYKEEPDL  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~  142 (192)
                      .+++.|+|+++.+...+.+|++|+|+|++|++|++++|+++..|++|+++++++++.+.++ ++|+  +.++++.+. ++
T Consensus        86 ~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~  163 (288)
T smart00829       86 PVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLR-ELGIPDDHIFSSRDL-SF  163 (288)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCChhheeeCCCc-cH
Confidence            5688899999877788999999999999999999999999999999999999999999998 9998  788888776 78


Q ss_pred             HHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          143 DVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       143 ~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .+.+++...+ ++    |++|+.....++++++++|. +.+|..
T Consensus       164 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~  207 (288)
T smart00829      164 ADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKR  207 (288)
T ss_pred             HHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCc
Confidence            7778776654 44    88888888999999999994 567754

Enoylreductase in Polyketide synthases.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.55  E-value=1.7e-13  Score=107.79  Aligned_cols=115  Identities=26%  Similarity=0.310  Sum_probs=99.6

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC--CCeeeecCCcccH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG--FDDAFNYKEEPDL  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~  142 (192)
                      +++..|+|+++.+..++++|++|+|+|++|++|++++|+++..|++|+.+++++++.+.++ +++  ++.++++... ++
T Consensus        90 ~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~  167 (293)
T cd05195          90 PVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLR-ELGGPVDHIFSSRDL-SF  167 (293)
T ss_pred             hHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HhCCCcceEeecCch-hH
Confidence            5788999999877788999999999998999999999999999999999999999999998 887  7888887766 78


Q ss_pred             HHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          143 DVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       143 ~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+++.+.+ ++    |++|+..++.++++++++|+ +.+|...
T Consensus       168 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~  212 (293)
T cd05195         168 ADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRD  212 (293)
T ss_pred             HHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeeccc
Confidence            8888877654 55    89998899999999999995 5677644

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.55  E-value=1.2e-12  Score=105.14  Aligned_cols=113  Identities=27%  Similarity=0.392  Sum_probs=94.6

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      .+++.++++++.+..++.+|++|+|+|++|++|++++++++..|++|+.+. ++++.+.++ ++|++.+++.... ++.+
T Consensus       123 ~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~~-~~g~~~~~~~~~~-~~~~  199 (325)
T cd08271         123 PCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVK-SLGADHVIDYNDE-DVCE  199 (325)
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHHH-HcCCcEEecCCCc-cHHH
Confidence            567889999987778889999999999889999999999999999988887 778888887 8999999987766 6777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .+++...+ ++    |++++.....++++++++|+ +.+|..
T Consensus       200 ~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~  241 (325)
T cd08271         200 RIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGR  241 (325)
T ss_pred             HHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCC
Confidence            77776654 55    78887777789999999995 456543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.55  E-value=1.7e-13  Score=111.56  Aligned_cols=159  Identities=13%  Similarity=0.088  Sum_probs=116.4

Q ss_pred             ccchhhhhhhhccccc----cCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHH
Q 029543            6 RNTSKRLCKIQNILKQ----NAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEI   78 (192)
Q Consensus         6 ~~g~~~~C~~~~~~g~----~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~   78 (192)
                      +++..+.|++....|.    ...|.+++|+.++..  .+.       .+|..... ....+     +++++|||+++. .
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~-------~~p~~l~~~~a~~l-----~~~~~ta~~~~~-~  162 (344)
T cd08284          96 RRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLL-------KLPDGLSDEAALLL-----GDILPTGYFGAK-R  162 (344)
T ss_pred             hCcCcccCCCCccccccccCCCCCceeEEEEcccccCceE-------ECCCCCCHHHhhhh-----cCchHHHHhhhH-h
Confidence            3455566665444422    125788899999863  333       22221000 11112     568999999994 5


Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc--
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV--  154 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~--  154 (192)
                      .++.+|++|+|+| +|++|++++|+|+.+|+ +|+++++++++.+.++ ++|++ +++.+.. ++.+.+.+.+++ ++  
T Consensus       163 ~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~~~~~~~-~~~~~l~~~~~~~~~dv  238 (344)
T cd08284         163 AQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA-ALGAE-PINFEDA-EPVERVREATEGRGADV  238 (344)
T ss_pred             cCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HhCCe-EEecCCc-CHHHHHHHHhCCCCCCE
Confidence            7888999999997 89999999999999997 8999998899999988 89985 5677665 787888877654 55  


Q ss_pred             --ccccH-HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          155 --DFVGI-EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       155 --d~~g~-~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                        |++|+ .....++++++++|+ +.+|...
T Consensus       239 vid~~~~~~~~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         239 VLEAVGGAAALDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             EEECCCCHHHHHHHHHhcccCCEEEEECcCC
Confidence              88884 688999999999995 5777654

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.55  E-value=1.1e-12  Score=105.68  Aligned_cols=113  Identities=21%  Similarity=0.181  Sum_probs=86.8

Q ss_pred             chhHHHHHHHHH--HHhCCC-CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLY--EICSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~--~~~~~~-~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      +.+++++++++.  +..... ++++|+|+|++|++|++++|+|+++|++|++++.+++|.+.++ ++|+++++++++.  
T Consensus       125 ~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~--  201 (324)
T cd08288         125 GTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLR-SLGASEIIDRAEL--  201 (324)
T ss_pred             hhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCEEEEcchh--
Confidence            345666665553  123444 5789999998899999999999999999999999999999998 9999999987642  


Q ss_pred             HHHHHHhhccCC----cccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          142 LDVALKRMFLCW----VDFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       142 ~~~~i~~~~~~g----~d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                       ...++..+..+    +|++|+..+..++..++.+|. +.+|...
T Consensus       202 -~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~  245 (324)
T cd08288         202 -SEPGRPLQKERWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAG  245 (324)
T ss_pred             -hHhhhhhccCcccEEEECCcHHHHHHHHHHhcCCCEEEEEEecC
Confidence             22444444333    399998778888899999884 5777653

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.54  E-value=9.5e-13  Score=105.19  Aligned_cols=155  Identities=24%  Similarity=0.174  Sum_probs=112.9

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhc--------ccC--------CCcccccCCCCC---------------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMS--------KLD--------TSLFYSFCPGGV---------------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~--------~~~--------~~~~~~~~~g~~---------------   64 (192)
                      .+....+.|...+++++|++.++++|+.+.....        +..        ++....|..|+.               
T Consensus        14 ~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~   93 (305)
T cd08270          14 LRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAERPDGAVPGWDAAGVVERAAADGSGPAVGARVVGLGAMGAWAELVA   93 (305)
T ss_pred             eEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCcceeeEEE
Confidence            4444566777778999999999999985432210        000        111112222221               


Q ss_pred             ---------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 029543           65 ---------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL  123 (192)
Q Consensus        65 ---------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~  123 (192)
                                           ++++.|||+++.+.... +|++|+|+|++|++|.+++++++..|++|+.+++++++.+.
T Consensus        94 v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  172 (305)
T cd08270          94 VPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEG  172 (305)
T ss_pred             EchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence                                 56778999998655444 69999999988999999999999999999999999999999


Q ss_pred             HHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          124 LKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       124 ~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++ ++|++.+++...  ++       ..+++    |++|+..+..++++++++|+ +.+|...
T Consensus       173 ~~-~~g~~~~~~~~~--~~-------~~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~  225 (305)
T cd08270         173 LR-ELGAAEVVVGGS--EL-------SGAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSSS  225 (305)
T ss_pred             HH-HcCCcEEEeccc--cc-------cCCCceEEEECCCcHHHHHHHHHhcCCCEEEEEeccC
Confidence            99 899987664332  11       11123    99998889999999999995 6788654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.54  E-value=2e-12  Score=103.58  Aligned_cols=115  Identities=28%  Similarity=0.303  Sum_probs=98.5

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.|+|+++.+...+.+|++++|+|++|++|.+++++++..|++|+++++++++.+.++ ++|++.+++.... ++.+
T Consensus       121 ~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  198 (325)
T TIGR02824       121 PETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACE-ALGADIAINYREE-DFVE  198 (325)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCch-hHHH
Confidence            5677899998777888999999999999999999999999999999999999999999997 8999888887765 6777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .++....+ ++    |++|+..+..++++++++|+ +.+|...
T Consensus       199 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~  241 (325)
T TIGR02824       199 VVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQG  241 (325)
T ss_pred             HHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEEEEEecCC
Confidence            77766654 45    88888888899999999995 5677643

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.53  E-value=1.6e-13  Score=111.45  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             cchhhhhhhhccccc-----cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCC
Q 029543            7 NTSKRLCKIQNILKQ-----NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSP   81 (192)
Q Consensus         7 ~g~~~~C~~~~~~g~-----~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~   81 (192)
                      .|..+.|++....+.     ..+|++++|+.++...+..       +|...     ++.......+++++|+++.+....
T Consensus        97 ~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~-------iP~~~-----~~~~aa~~~~~~~a~~~l~~~~~~  164 (339)
T cd08232          97 AGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVP-------LPDGL-----SLRRAALAEPLAVALHAVNRAGDL  164 (339)
T ss_pred             CcCcccCccccceeeccccCCCCCceeeEEEechHHeEE-------CcCCC-----CHHHhhhcchHHHHHHHHHhcCCC
Confidence            355566776544442     2468899999999876552       23221     011111145888999998655555


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DF  156 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~  156 (192)
                       ++++|+|.| +|++|++++|+|+.+|+ +|+++++++++.+.++ ++|++++++++++ ++.+ ... ..+++    |+
T Consensus       165 -~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~-~~g~~~vi~~~~~-~~~~-~~~-~~~~vd~vld~  238 (339)
T cd08232         165 -AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDLADAPLAVAR-AMGADETVNLARD-PLAA-YAA-DKGDFDVVFEA  238 (339)
T ss_pred             -CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCCEEEcCCch-hhhh-hhc-cCCCccEEEEC
Confidence             899999987 79999999999999999 8999999999999888 8999999988765 4322 111 11234    88


Q ss_pred             ccH-HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          157 VGI-EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       157 ~g~-~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +|+ ..++..+++|+++|+ +.+|...
T Consensus       239 ~g~~~~~~~~~~~L~~~G~~v~~g~~~  265 (339)
T cd08232         239 SGAPAALASALRVVRPGGTVVQVGMLG  265 (339)
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEecCC
Confidence            884 688999999999995 5677544

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.53  E-value=2.1e-13  Score=110.28  Aligned_cols=152  Identities=15%  Similarity=0.110  Sum_probs=116.4

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      ++.++.++|...+..++..+|.+.+|+.++...+..-|...   +..   ....+     ++++.|||+++ +.++++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~---~~~---~~~~~-----~~~~~ta~~~~-~~~~~~~~  168 (329)
T cd08298         101 CRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDY---DDE---EAAPL-----LCAGIIGYRAL-KLAGLKPG  168 (329)
T ss_pred             HhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCC---CHH---HhhHh-----hhhhHHHHHHH-HhhCCCCC
Confidence            34567788988888888778999999999987665222111   000   01112     66899999999 88899999


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc-H
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG-I  159 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g-~  159 (192)
                      ++|+|+| +|++|+++++++++.|++|+++++++++.+.++ ++|++.+++....          ...++    ++.+ +
T Consensus       169 ~~vlV~g-~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~----------~~~~vD~vi~~~~~~  236 (329)
T cd08298         169 QRLGLYG-FGASAHLALQIARYQGAEVFAFTRSGEHQELAR-ELGADWAGDSDDL----------PPEPLDAAIIFAPVG  236 (329)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHH-HhCCcEEeccCcc----------CCCcccEEEEcCCcH
Confidence            9999998 899999999999999999999999999999998 9999888876532          11123    5544 5


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeC
Q 029543          160 EYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ..++.++++++++|+ +.+|..
T Consensus       237 ~~~~~~~~~l~~~G~~v~~g~~  258 (329)
T cd08298         237 ALVPAALRAVKKGGRVVLAGIH  258 (329)
T ss_pred             HHHHHHHHHhhcCCEEEEEcCC
Confidence            688999999999995 566643

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.52  E-value=2.8e-12  Score=102.90  Aligned_cols=115  Identities=30%  Similarity=0.275  Sum_probs=98.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.++|+++.+...+.++++++|+|++|++|+.++++++..|++++.+++++++.+.++ ++|.+.+++.... ++.+
T Consensus       126 ~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  203 (328)
T cd08268         126 WMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL-ALGAAHVIVTDEE-DLVA  203 (328)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEecCCc-cHHH
Confidence            5678899999877788889999999999999999999999999999999999999999998 8999888888766 7777


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+.+ ++    +++|+.....++++++++|+ +.+|...
T Consensus       204 ~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~  246 (328)
T cd08268         204 EVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALS  246 (328)
T ss_pred             HHHHHhCCCCceEEEECCchHhHHHHHHhhccCCEEEEEEeCC
Confidence            77766654 45    88888888999999999995 5677643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.52  E-value=3e-12  Score=102.73  Aligned_cols=112  Identities=24%  Similarity=0.291  Sum_probs=94.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +.++.+||+++.+..++.+|++++|+|++|++|++++++++..|++|+.++++ ++.+.++ ++|++.+++...  .+.+
T Consensus       126 ~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~--~~~~  201 (326)
T cd08272         126 PLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFAR-SLGADPIIYYRE--TVVE  201 (326)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHH-HcCCCEEEecch--hHHH
Confidence            45678889888778899999999999999999999999999999999999988 8999998 899988888654  3666


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .+.+.+.+ ++    |++|+.....++++++++|+ +.+|..
T Consensus       202 ~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~  243 (326)
T cd08272         202 YVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGG  243 (326)
T ss_pred             HHHHhcCCCCCcEEEECCChHHHHHHHHHhccCCEEEEEecC
Confidence            67776654 55    88888888889999999994 566654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.51  E-value=3.9e-13  Score=109.31  Aligned_cols=143  Identities=18%  Similarity=0.087  Sum_probs=104.2

Q ss_pred             CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHH
Q 029543           23 AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQ  102 (192)
Q Consensus        23 ~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q  102 (192)
                      .+|.+++|+.++...+.       .+|+..     ++..+..+.++++||+++ ..+++++|++|+|+| +|++|.+++|
T Consensus       114 ~~g~~~~~~~v~~~~~~-------~lP~~~-----s~~~a~~~~~~~~a~~~~-~~~~~~~g~~VlI~g-~g~vg~~~~~  179 (341)
T cd08262         114 APGGYAEYMLLSEALLL-------RVPDGL-----SMEDAALTEPLAVGLHAV-RRARLTPGEVALVIG-CGPIGLAVIA  179 (341)
T ss_pred             CCCceeeeEEechHHeE-------ECCCCC-----CHHHhhhhhhHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHH
Confidence            35677888888776544       222211     011111255888999996 778999999999998 6999999999


Q ss_pred             HHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH---HHHhhccC-Cc----ccccH-HHHHHHHHhhcCC
Q 029543          103 FAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV---ALKRMFLC-WV----DFVGI-EYCRSLLLVLLFR  172 (192)
Q Consensus       103 ~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~---~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~  172 (192)
                      +|+.+|++ ++++++++++.+.++ ++|++++++++++ +..+   .+.+...+ ++    |++|+ ..+..++++++++
T Consensus       180 la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~  257 (341)
T cd08262         180 ALKARGVGPIVASDFSPERRALAL-AMGADIVVDPAAD-SPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG  257 (341)
T ss_pred             HHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEEcCCCc-CHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC
Confidence            99999995 778888899999998 9999999987654 3322   23333333 44    88886 4788999999999


Q ss_pred             Ce-EEEeeCC
Q 029543          173 PL-KIMENDS  181 (192)
Q Consensus       173 G~-v~~G~~~  181 (192)
                      |+ +.+|...
T Consensus       258 g~~v~~g~~~  267 (341)
T cd08262         258 GRIVVVGVCM  267 (341)
T ss_pred             CEEEEECCCC
Confidence            95 5777653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.51  E-value=4.4e-12  Score=101.41  Aligned_cols=115  Identities=30%  Similarity=0.339  Sum_probs=99.1

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ..++.+||+++.+...+.++++|+|+|++|++|++++++++..|++|+.+++++++.+.++ ++|++.+++.... ++.+
T Consensus       121 ~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~  198 (323)
T cd08241         121 PVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALGADHVIDYRDP-DLRE  198 (323)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-HcCCceeeecCCc-cHHH
Confidence            4677888888866788899999999998899999999999999999999999999999998 8999888887776 7888


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+.+ ++    |++|+.....++++++++|+ +.+|...
T Consensus       199 ~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~  241 (323)
T cd08241         199 RVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFAS  241 (323)
T ss_pred             HHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCEEEEEccCC
Confidence            88877665 55    88888888899999999995 5777644

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.50  E-value=2.6e-13  Score=120.96  Aligned_cols=115  Identities=24%  Similarity=0.242  Sum_probs=102.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF---GFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~~~vi~~~~~~~  141 (192)
                      ++.+.|+|++|..++.+++|+++||++++||+|++++.+|.+.|++|+.++.|.+|++++++.|   ...++-|.++. +
T Consensus      1534 P~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdt-s 1612 (2376)
T KOG1202|consen 1534 PVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDT-S 1612 (2376)
T ss_pred             ceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccc-c
Confidence            8899999999999999999999999999999999999999999999999999999999998544   34567788888 9


Q ss_pred             HHHHHHhhccC-Cccc----ccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          142 LDVALKRMFLC-WVDF----VGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       142 ~~~~i~~~~~~-g~d~----~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      |+..+..+|++ |+|.    ...+.++.+++||..+|+ +-+|-.
T Consensus      1613 FEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKf 1657 (2376)
T KOG1202|consen 1613 FEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKF 1657 (2376)
T ss_pred             HHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecce
Confidence            99999999998 8854    456799999999999995 577753

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.49  E-value=6.8e-13  Score=107.37  Aligned_cols=157  Identities=20%  Similarity=0.157  Sum_probs=115.9

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      ++.+..++|++....+....|++++++.++...+..-|...   +..   ....+     .+++.|||+++. ..++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~---~~~---~~~~l-----~~~~~ta~~~l~-~~~~~~~  163 (330)
T cd08245          96 CRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGL---PLA---QAAPL-----LCAGITVYSALR-DAGPRPG  163 (330)
T ss_pred             hhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCC---CHH---Hhhhh-----hhhHHHHHHHHH-hhCCCCC
Confidence            45667778888766666557889999999876554222111   000   00111     568899999994 4789999


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc-H
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG-I  159 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g-~  159 (192)
                      ++|+|+| +|++|++++++|+..|++|+++++++++.+.++ ++|++.+++..+. +....    ..+++    |+++ .
T Consensus       164 ~~vlI~g-~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~----~~~~~d~vi~~~~~~  236 (330)
T cd08245         164 ERVAVLG-IGGLGHLAVQYARAMGFETVAITRSPDKRELAR-KLGADEVVDSGAE-LDEQA----AAGGADVILVTVVSG  236 (330)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCcEEeccCCc-chHHh----ccCCCCEEEECCCcH
Confidence            9999997 788999999999999999999999999999998 8999988887654 33332    11223    8877 5


Q ss_pred             HHHHHHHHhhcCCCe-EEEeeC
Q 029543          160 EYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       160 ~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .....++++++++|+ +.+|..
T Consensus       237 ~~~~~~~~~l~~~G~~i~~~~~  258 (330)
T cd08245         237 AAAEAALGGLRRGGRIVLVGLP  258 (330)
T ss_pred             HHHHHHHHhcccCCEEEEECCC
Confidence            688999999999995 567654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.48  E-value=7.2e-12  Score=101.22  Aligned_cols=112  Identities=28%  Similarity=0.293  Sum_probs=89.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.++|+++.+..++.+|++|+|+|++|++|++++++++..|++|+.+++ +++.+.++ ++|++. ++.... ++.+
T Consensus       121 ~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~-~~g~~~-~~~~~~-~~~~  196 (331)
T cd08273         121 VLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALR-ELGATP-IDYRTK-DWLP  196 (331)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHH-HcCCeE-EcCCCc-chhh
Confidence            5677899999877778999999999998899999999999999999999997 88889998 899754 455444 4443


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      .  ....+++    |++|+.....++++++++|+ +.+|....
T Consensus       197 ~--~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~  237 (331)
T cd08273         197 A--MLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSS  237 (331)
T ss_pred             h--hccCCCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCC
Confidence            3  2222344    89998889999999999995 57776543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.44  E-value=2.4e-11  Score=96.64  Aligned_cols=110  Identities=26%  Similarity=0.384  Sum_probs=89.6

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      .+++.++|+++.+..++.+|++|+|+|++|++|++++++++..|++|+.+++++ +.+.++ ++|++.+++.... ++.+
T Consensus       126 ~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~-~~g~~~~~~~~~~-~~~~  202 (309)
T cd05289         126 PLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR-SLGADEVIDYTKG-DFER  202 (309)
T ss_pred             hHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH-HcCCCEEEeCCCC-chhh
Confidence            456778888886666789999999999889999999999999999999998877 888887 8999888887765 4443


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                          .+.+ ++    |++|+.....++++++++|. +.+|...
T Consensus       203 ----~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~  241 (309)
T cd05289         203 ----AAAPGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPP  241 (309)
T ss_pred             ----ccCCCCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCC
Confidence                2222 34    89998888999999999995 5677543

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.42  E-value=5.1e-11  Score=96.17  Aligned_cols=114  Identities=28%  Similarity=0.346  Sum_probs=92.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .++++++|+++.+..++.+|++|+|+|++|++|++++++|+.. +..++... .+++.++++ ++|++.+++.... ++.
T Consensus       120 ~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~~~~~~-~~~  196 (337)
T cd08275         120 PVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTA-SASKHEALK-ENGVTHVIDYRTQ-DYV  196 (337)
T ss_pred             hHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCcEEEEeC-CHHHHHHHH-HcCCcEEeeCCCC-cHH
Confidence            4688899999877888999999999998899999999999998 43443332 466888887 8999999988776 788


Q ss_pred             HHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          144 VALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +.+++.+.+++    |++|+.....++++++++|+ +.+|...
T Consensus       197 ~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~  239 (337)
T cd08275         197 EEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAAN  239 (337)
T ss_pred             HHHHHHhCCCceEEEECCcHHHHHHHHHhhccCcEEEEEeecC
Confidence            88877664444    89998888999999999995 6777653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.41  E-value=3.5e-11  Score=96.38  Aligned_cols=111  Identities=26%  Similarity=0.311  Sum_probs=85.8

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      ++++.+||+++.+..++.+|++|+|+|++|++|++++++|+..|++|++++++ ++.+.++ ++|++.+++.... ++. 
T Consensus       125 ~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~~-~~~-  200 (319)
T cd08267         125 PVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR-SLGADEVIDYTTE-DFV-  200 (319)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH-HcCCCEeecCCCC-Ccc-
Confidence            46788999999777778999999999988999999999999999999999865 8888888 9999888887654 443 


Q ss_pred             HHHhhccC-Cc----ccccHH--HHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIE--YCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~--~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                        +..+.+ ++    |++|+.  .....+..++++|+ +.+|...
T Consensus       201 --~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~  243 (319)
T cd08267         201 --ALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGP  243 (319)
T ss_pred             --hhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEecccc
Confidence              223333 44    788743  33444445999995 6777654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.34  E-value=3.3e-11  Score=98.54  Aligned_cols=111  Identities=23%  Similarity=0.192  Sum_probs=86.4

Q ss_pred             chhHHHHHHHHHHHh-CCCCCCEEEEeCCCchHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLYEIC-SPKKGEYVYVSAASGAVGQLVGQFAKLA-GC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~-~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      ++++.|+|+++.+.. ++.+|++|+|+|++|++|++++|+|+++ +. +|+.++ ++++.+.++ ++|++.++++++. +
T Consensus       132 ~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~-~~g~~~~i~~~~~-~  208 (352)
T cd08247         132 PLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNK-KLGADHFIDYDAH-S  208 (352)
T ss_pred             HHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHH-HhCCCEEEecCCC-c
Confidence            557889999996666 7999999999999999999999999987 55 677776 566667777 9999999987765 4


Q ss_pred             ---HHHHHHhhcc-C-Cc----ccccH-HHHHHHHHhhc---CCCe-EEEe
Q 029543          142 ---LDVALKRMFL-C-WV----DFVGI-EYCRSLLLVLL---FRPL-KIME  178 (192)
Q Consensus       142 ---~~~~i~~~~~-~-g~----d~~g~-~~~~~~~~~l~---~~G~-v~~G  178 (192)
                         +...+.+.+. + ++    |++|+ .....++++++   ++|+ +.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         209 GVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             ccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEe
Confidence               4444444332 3 55    89987 68888999999   9994 5454

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.29  E-value=3.7e-11  Score=94.95  Aligned_cols=106  Identities=25%  Similarity=0.222  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcC-CCeeeecCCcccHH
Q 029543           66 MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFG-FDDAFNYKEEPDLD  143 (192)
Q Consensus        66 ~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~  143 (192)
                      +++.|||+++ ...++.+|++++|+| +|++|++++++|+.+|++ |+++++++++.+.++ ++| ++.+++....  . 
T Consensus        81 ~~~~ta~~~~-~~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~-  154 (277)
T cd08255          81 ALAATALNGV-RDAEPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE-ALGPADPVAADTAD--E-  154 (277)
T ss_pred             HHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH-HcCCCccccccchh--h-
Confidence            5789999998 578899999999998 799999999999999997 999999999999888 899 5555543321  1 


Q ss_pred             HHHHhhccCCc----cccc-HHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          144 VALKRMFLCWV----DFVG-IEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g-~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                           ....++    |+++ ......++++++++|+ +.+|..+.
T Consensus       155 -----~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~  194 (277)
T cd08255         155 -----IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGL  194 (277)
T ss_pred             -----hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCC
Confidence                 111133    7877 5688899999999995 57776543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.09  E-value=1.2e-09  Score=93.03  Aligned_cols=98  Identities=14%  Similarity=0.053  Sum_probs=74.4

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCcc------------cHHHHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEEP------------DLDVALK  147 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~~------------~~~~~i~  147 (192)
                      ..++++|+|+| +|++|+++++.|+.+|++|+++|+++++++.++ ++|++.+ +|..+++            ++.+..+
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            35799999999 899999999999999999999999999999999 9999854 6653320            2222222


Q ss_pred             hh-cc--CCc----ccccHH------H-HHHHHHhhcCCCe-EEEeeC
Q 029543          148 RM-FL--CWV----DFVGIE------Y-CRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       148 ~~-~~--~g~----d~~g~~------~-~~~~~~~l~~~G~-v~~G~~  180 (192)
                      +. .+  .++    +++|.+      . .+++++.+|++|+ +.+|..
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence            22 21  123    788742      4 5999999999995 577875

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.90  E-value=2e-08  Score=83.68  Aligned_cols=107  Identities=13%  Similarity=0.053  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHH
Q 029543           69 VTAFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALK  147 (192)
Q Consensus        69 ~ta~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~  147 (192)
                      -..+.++.+..++ .+|++|+|.| .|++|+.+++.+|.+|++|+++++++.|++.++ ++|++.+ +      ..+.++
T Consensus       186 ~s~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-~~G~~~~-~------~~e~v~  256 (413)
T cd00401         186 ESLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-MEGYEVM-T------MEEAVK  256 (413)
T ss_pred             hhhHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-hcCCEEc-c------HHHHHc
Confidence            3445566454443 5899999999 899999999999999999999999999999999 9998533 1      222222


Q ss_pred             hhccCCc-ccccHH-HHHHH-HHhhcCCCe-EEEeeCCCCCcccc
Q 029543          148 RMFLCWV-DFVGIE-YCRSL-LLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       148 ~~~~~g~-d~~g~~-~~~~~-~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      .  .+-+ +++|.. .+... ++.++++|+ +.+|..  +.++++
T Consensus       257 ~--aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~  297 (413)
T cd00401         257 E--GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDV  297 (413)
T ss_pred             C--CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCH
Confidence            1  1212 899854 67765 999999995 577854  334544

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.39  E-value=5.3e-06  Score=69.51  Aligned_cols=107  Identities=13%  Similarity=0.055  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhCCC-CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHH
Q 029543           68 SVTAFAGLYEICSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVAL  146 (192)
Q Consensus        68 ~~ta~~~l~~~~~~~-~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i  146 (192)
                      .-.+|.++.+...+. .|++|+|.| .|.+|+.+++.++.+|++|+++++++.+...+. ..|++ +.      ++.+.+
T Consensus       195 ~~s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-~~G~~-v~------~l~eal  265 (425)
T PRK05476        195 GESLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-MDGFR-VM------TMEEAA  265 (425)
T ss_pred             HhhhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-hcCCE-ec------CHHHHH
Confidence            344566664443444 899999999 899999999999999999999999988877776 66764 22      222222


Q ss_pred             HhhccCCc-ccccHH-HHH-HHHHhhcCCCe-EEEeeCCCCCc
Q 029543          147 KRMFLCWV-DFVGIE-YCR-SLLLVLLFRPL-KIMENDSGSTP  185 (192)
Q Consensus       147 ~~~~~~g~-d~~g~~-~~~-~~~~~l~~~G~-v~~G~~~~~~~  185 (192)
                      ..  .+-+ +++|.. .+. ..++.++++++ +.+|....+..
T Consensus       266 ~~--aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid  306 (425)
T PRK05476        266 EL--GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEID  306 (425)
T ss_pred             hC--CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence            21  1112 788854 555 67889999995 56776654433

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.28  E-value=4.5e-06  Score=64.31  Aligned_cols=65  Identities=23%  Similarity=0.408  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----CeeeecCCcccHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF----DDAFNYKEEPDLDVALK  147 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~~i~  147 (192)
                      .++.++|+||++|||..+++.....|++|+.+.|+.++++.+.++++.    ...+|..+...+.+.+.
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~   73 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIE   73 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHH
Confidence            468899999999999999999999999999999999999999988883    23466665424333333

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.27  E-value=9e-06  Score=69.50  Aligned_cols=96  Identities=16%  Similarity=0.128  Sum_probs=68.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCC-------------cccHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKE-------------EPDLDVALK  147 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~-------------~~~~~~~i~  147 (192)
                      .++++|+|.| +|.+|++++++++.+|++|+++++++++++.++ ++|++.+ ++..+             + ++.+...
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~-~lGa~~v~v~~~e~g~~~~gYa~~~s~-~~~~~~~  238 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEGGSGDGYAKVMSE-EFIAAEM  238 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccccceeecCH-HHHHHHH
Confidence            3578999999 899999999999999999999999999999999 8998763 34321             1 2332222


Q ss_pred             hhcc----C-Cc--ccc---cH-H---HHHHHHHhhcCCCe-EEEeeC
Q 029543          148 RMFL----C-WV--DFV---GI-E---YCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       148 ~~~~----~-g~--d~~---g~-~---~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      +...    + .+  +++   |. .   ..+..++.+|+|+. |-++..
T Consensus       239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence            2222    2 22  555   53 2   67788999999995 445443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.23  E-value=1.9e-05  Score=65.86  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           70 TAFAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        70 ta~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      .++.++.+..+ ...|++|+|.| .|.+|+.+++.++.+|++|+++++++.+...++ ..|+. +.      +..+.++.
T Consensus       180 s~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~~-v~------~leeal~~  250 (406)
T TIGR00936       180 STIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGFR-VM------TMEEAAKI  250 (406)
T ss_pred             hHHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCCE-eC------CHHHHHhc
Confidence            34455534433 36899999999 999999999999999999999999988877777 67763 32      12222221


Q ss_pred             hccCC-cccccHH-HHH-HHHHhhcCCCe-EEEeeCC
Q 029543          149 MFLCW-VDFVGIE-YCR-SLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       149 ~~~~g-~d~~g~~-~~~-~~~~~l~~~G~-v~~G~~~  181 (192)
                        .+- ++++|.. .+. ..+..++++++ +.+|...
T Consensus       251 --aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       251 --GDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             --CCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence              121 2778854 455 48889999995 4666553

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.22  E-value=1.8e-05  Score=66.84  Aligned_cols=99  Identities=13%  Similarity=0.044  Sum_probs=71.9

Q ss_pred             HHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhc
Q 029543           72 FAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        72 ~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      +.++.+..++ ..|++|+|.| .|.||+.+++.++.+|++|+++++++.+...+. ..|+..+       ++.+.++.. 
T Consensus       241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-~~G~~vv-------~leEal~~A-  310 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-MEGYQVL-------TLEDVVSEA-  310 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-hcCCeec-------cHHHHHhhC-
Confidence            5556454444 5799999999 999999999999999999999999988777777 7777532       232333221 


Q ss_pred             cCCc-ccccHH--HHHHHHHhhcCCCe-EEEeeCC
Q 029543          151 LCWV-DFVGIE--YCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       151 ~~g~-d~~g~~--~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                       +-+ ++.|..  .....++.|+++++ +.+|...
T Consensus       311 -DVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        311 -DIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             -CEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence             212 777754  35889999999995 5777643

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.20  E-value=1.8e-05  Score=62.24  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=42.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      ..+.+++|+||++|||...+......|.+++.+.|+++|++.+.+++.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~   51 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELE   51 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH
Confidence            467899999999999999998888899999999999999999876553

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=98.05  E-value=3.4e-05  Score=58.03  Aligned_cols=69  Identities=13%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--CeeeecCCcc---cHHHHHHhhcc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF--DDAFNYKEEP---DLDVALKRMFL  151 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~--~~vi~~~~~~---~~~~~i~~~~~  151 (192)
                      -|.+|||+|+++|||+.+++-....|-+||++.|++++++.+++....  ..+.|..+.+   .+.+.+++..+
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P   77 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP   77 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC
Confidence            478999999999999999988888999999999999999999843321  2455655441   25555555433

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.00  E-value=6.2e-05  Score=59.70  Aligned_cols=107  Identities=18%  Similarity=0.309  Sum_probs=69.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe-e----eecCCcccHHHHHHh---hcc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDD-A----FNYKEEPDLDVALKR---MFL  151 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~-v----i~~~~~~~~~~~i~~---~~~  151 (192)
                      .|+.|+|+||++|||..++.-....|++++.++|+.++++.+.+   +.+... +    .|..++++..+.+.+   ..+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            58999999999999998876666689999999888888777732   333322 2    344444233333321   111


Q ss_pred             C--------Cc--------------------ccccH-HHHHHHHHhhcCC--C-eEEEeeCCCCCccccc
Q 029543          152 C--------WV--------------------DFVGI-EYCRSLLLVLLFR--P-LKIMENDSGSTPIPFA  189 (192)
Q Consensus       152 ~--------g~--------------------d~~g~-~~~~~~~~~l~~~--G-~v~~G~~~~~~~~~~~  189 (192)
                      +        |+                    +..|. .....++..|++.  | +|+++...|..++|+.
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~  160 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR  160 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc
Confidence            1        11                    13342 3567788888876  7 4688888888777764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.94  E-value=0.00041  Score=55.78  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=65.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-ccccHH-
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-DFVGIE-  160 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-d~~g~~-  160 (192)
                      .+++|+|.| .|.+|+.+++.++.+|++|++.++++++.+.++ ++|++.+ ..  + ++.+.+.+.  +-+ +++... 
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-~~G~~~~-~~--~-~l~~~l~~a--DiVI~t~p~~~  222 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHLARIT-EMGLSPF-HL--S-ELAEEVGKI--DIIFNTIPALV  222 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCeee-cH--H-HHHHHhCCC--CEEEECCChhh
Confidence            589999999 899999999999999999999999998888888 8887532 21  1 333333211  111 666544 


Q ss_pred             HHHHHHHhhcCCCe-EEEeeCCCCC
Q 029543          161 YCRSLLLVLLFRPL-KIMENDSGST  184 (192)
Q Consensus       161 ~~~~~~~~l~~~G~-v~~G~~~~~~  184 (192)
                      ..+..++.++++++ +-++...+..
T Consensus       223 i~~~~l~~~~~g~vIIDla~~pggt  247 (296)
T PRK08306        223 LTKEVLSKMPPEALIIDLASKPGGT  247 (296)
T ss_pred             hhHHHHHcCCCCcEEEEEccCCCCc
Confidence            44566778888774 4455554443

>PRK08324 short chain dehydrogenase; Validated

Probab=97.94  E-value=0.00012  Score=65.33  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=41.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|++++|+||+|+||+.+++.+...|++|+++++++++.+.+.++++.
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~  468 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG  468 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999887776645543

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.83  E-value=0.00017  Score=59.84  Aligned_cols=93  Identities=20%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc--ccc---c
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV--DFV---G  158 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~--d~~---g  158 (192)
                      +.+|+|.| +|.+|+.+++.++.+|++|+++++++++++.+.+.++.....+..+..++.+.+.+.   .+  +++   |
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~a---DvVI~a~~~~g  242 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRA---DLLIGAVLIPG  242 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccC---CEEEEccccCC
Confidence            45699999 799999999999999999999999999988886456654322322221343333321   22  554   3


Q ss_pred             H--H--HHHHHHHhhcCCCe-EEEeeC
Q 029543          159 I--E--YCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       159 ~--~--~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .  .  .....++.++++++ +-++..
T Consensus       243 ~~~p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       243 AKAPKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             CCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence            2  2  34778888999984 456644

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.82  E-value=0.00014  Score=57.63  Aligned_cols=56  Identities=18%  Similarity=0.345  Sum_probs=45.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~  139 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++++.+. +.+.+.+ +|..+.
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~   59 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEP   59 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCH
Confidence            4678999999999999999888888999999999999888887 6565433 465554

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=97.81  E-value=9.7e-05  Score=58.82  Aligned_cols=68  Identities=19%  Similarity=0.371  Sum_probs=50.6

Q ss_pred             CCCEEEEeCCCchHHH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHh----cCCC---eeeecCCcccHHHHHHhhcc
Q 029543           83 KGEYVYVSAASGAVGQ-LVGQFAKLAGCHVVGSAGSKEKVDLLKNK----FGFD---DAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~-~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~i~~~~~  151 (192)
                      .|+|.+|+||+.+||. ++-++|| +|.+|+.+.|+++|++.++++    .++.   .++|..+++...+.+++...
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~  123 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLA  123 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhc
Confidence            4799999999999997 5557887 899999999999999988744    3432   35787766233555555443

>PRK08017 oxidoreductase; Provisional

Probab=97.78  E-value=0.00016  Score=56.29  Aligned_cols=53  Identities=17%  Similarity=0.339  Sum_probs=44.6

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKE  138 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~  138 (192)
                      ++++|+||+|++|..+++.....|++|++++|++++.+.++ +.+++.+ .|..+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~   56 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN-SLGFTGILLDLDD   56 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH-hCCCeEEEeecCC
Confidence            57999999999999999988888999999999999988887 7776543 45544

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.00027  Score=55.79  Aligned_cols=61  Identities=23%  Similarity=0.342  Sum_probs=46.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCcccHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEEPDLDVAL  146 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~i  146 (192)
                      ++++|+||+|++|..+++.+...|++|++++|++++.+.+. ..+...+ .|..+.+++.+.+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~   63 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA-AAGFTAVQLDVNDGAALARLA   63 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEEEeeCCCHHHHHHHH
Confidence            47999999999999999988888999999999988888776 5565433 5665542444333

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.00033  Score=54.58  Aligned_cols=57  Identities=14%  Similarity=0.117  Sum_probs=44.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~  139 (192)
                      .|++|+|+||+|++|..+++.....|++|+++++++.+.+.+.++++... ..|..++
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~   63 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDE   63 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCH
Confidence            57899999999999999998888889999999999887776653555432 3455544

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.68  E-value=9.8e-05  Score=64.48  Aligned_cols=69  Identities=13%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHh--------------CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC---------------
Q 029543           67 PSVTAFAGLYEIC--------------SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS---------------  117 (192)
Q Consensus        67 ~~~ta~~~l~~~~--------------~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~---------------  117 (192)
                      +..++++++.+..              ....|++|+|+| +|++|+++++.++..|++|+++++.               
T Consensus       106 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~  184 (564)
T PRK12771        106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYR  184 (564)
T ss_pred             CCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCcc
Confidence            4567788885431              367899999999 8999999999999999999999842               


Q ss_pred             ------HHHHHHHHHhcCCCeeeecC
Q 029543          118 ------KEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus       118 ------~~~~~~~~~~~g~~~vi~~~  137 (192)
                            +.+++.++ ++|++..++..
T Consensus       185 ~~~~~~~~~l~~~~-~~Gv~~~~~~~  209 (564)
T PRK12771        185 LPREVLDAEIQRIL-DLGVEVRLGVR  209 (564)
T ss_pred             CCHHHHHHHHHHHH-HCCCEEEeCCE
Confidence                  45677788 89988776643

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00037  Score=55.79  Aligned_cols=47  Identities=17%  Similarity=0.267  Sum_probs=41.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|++++|+||+|++|..+++.....|++|+++++++++++.+.++++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            57899999999999999999888899999999999988877764665

>PRK06182 short chain dehydrogenase; Validated

Probab=97.63  E-value=0.00042  Score=54.63  Aligned_cols=64  Identities=20%  Similarity=0.368  Sum_probs=48.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCcccHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEEPDLDVALK  147 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~i~  147 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|++++++.+. ..+... ..|..+.+++.+.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~   66 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVD   66 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHH
Confidence            4678999999999999999888888999999999998887776 555543 356555424444343

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.62  E-value=0.00021  Score=56.81  Aligned_cols=99  Identities=25%  Similarity=0.311  Sum_probs=58.3

Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCee--eecCCcccHHHHHHhh
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDA--FNYKEEPDLDVALKRM  149 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~v--i~~~~~~~~~~~i~~~  149 (192)
                      +.+++++++|++||-+| +| -|.++..+|+..|++|++++.|++..+.+++   +.|...-  +...+-.++......+
T Consensus        54 ~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I  131 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI  131 (273)
T ss_dssp             HHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE
T ss_pred             HHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE
Confidence            44677899999999999 55 7888999999999999999999998888863   3454321  2111110222211111


Q ss_pred             ccCCc-ccccH----HHHHHHHHhhcCCCeE
Q 029543          150 FLCWV-DFVGI----EYCRSLLLVLLFRPLK  175 (192)
Q Consensus       150 ~~~g~-d~~g~----~~~~~~~~~l~~~G~v  175 (192)
                      ..=+. +.+|.    ..++.+-+.|+|+|++
T Consensus       132 vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~  162 (273)
T PF02353_consen  132 VSIEMFEHVGRKNYPAFFRKISRLLKPGGRL  162 (273)
T ss_dssp             EEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred             EEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence            00011 77773    3688888999999953

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.00045  Score=54.40  Aligned_cols=57  Identities=11%  Similarity=0.177  Sum_probs=43.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC-CCe-eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG-FDD-AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g-~~~-vi~~~~~  139 (192)
                      .+.+++|+||+|++|..+++.....|++|++++|++++++.+.++++ ... ..|..+.
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~   62 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDP   62 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCH
Confidence            36799999999999999998777889999999999988776653555 222 2455544

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.57  E-value=0.00049  Score=53.92  Aligned_cols=47  Identities=21%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|+||..+++.+...|++|++++|++++.+.+.++++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG   51 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            57899999999999999998888889999999999988887764554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.56  E-value=0.00015  Score=61.43  Aligned_cols=94  Identities=13%  Similarity=0.092  Sum_probs=66.0

Q ss_pred             HhCCCCCCEEE----EeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCCcccHHHHHHhhccC
Q 029543           78 ICSPKKGEYVY----VSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD-DAFNYKEEPDLDVALKRMFLC  152 (192)
Q Consensus        78 ~~~~~~g~~Vl----V~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~i~~~~~~  152 (192)
                      ..++++|++++    |+||+|++|..++|+++..|++|+++.+.+++....+ ..+.+ .++|.+.. ...+.+...   
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~l~~~---  102 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGW-GDRFGALVFDATGI-TDPADLKAL---  102 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCc-CCcccEEEEECCCC-CCHHHHHHH---
Confidence            34667889888    8888999999999999999999999887766555544 45555 46666543 333333332   


Q ss_pred             CcccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          153 WVDFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       153 g~d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                            ...++..++.|.++|+ +.++....
T Consensus       103 ------~~~~~~~l~~l~~~griv~i~s~~~  127 (450)
T PRK08261        103 ------YEFFHPVLRSLAPCGRVVVLGRPPE  127 (450)
T ss_pred             ------HHHHHHHHHhccCCCEEEEEccccc
Confidence                  1356677888888885 56665443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.55  E-value=0.0015  Score=51.74  Aligned_cols=95  Identities=21%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCC
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      +.+.+|++||.+| +|+ |..+.++++..|.  +|++++.+++.++.+++.   .+.+.+ +.... ++.+ + ....+.
T Consensus        73 ~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~-d~~~-l-~~~~~~  146 (272)
T PRK11873         73 AELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLG-EIEA-L-PVADNS  146 (272)
T ss_pred             ccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEc-chhh-C-CCCCCc
Confidence            5678999999999 777 9888888888765  699999999999998832   344332 11112 2221 1 111123


Q ss_pred             cc-----cc-----c-HHHHHHHHHhhcCCCeE-EEee
Q 029543          154 VD-----FV-----G-IEYCRSLLLVLLFRPLK-IMEN  179 (192)
Q Consensus       154 ~d-----~~-----g-~~~~~~~~~~l~~~G~v-~~G~  179 (192)
                      +|     ++     . ...++.+++.|+|+|++ +.+.
T Consensus       147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            32     22     2 34889999999999965 4443

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00064  Score=52.41  Aligned_cols=57  Identities=23%  Similarity=0.368  Sum_probs=45.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~  139 (192)
                      .+++++|+|++|++|..+++.+...|++|++++|++++.+.+.+..+... ..|..+.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~   65 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDD   65 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCH
Confidence            57899999999999999999998899999999999888777663555443 2455443

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.54  E-value=0.00065  Score=53.19  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=40.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++++.+++..+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~   50 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHG   50 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC
Confidence            47899999999999999998888889999999999888877763333

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.53  E-value=0.00034  Score=56.63  Aligned_cols=108  Identities=18%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             chhHHHHHHHHHHHhCC----CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCc
Q 029543           65 IMPSVTAFAGLYEICSP----KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEE  139 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~----~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~  139 (192)
                      ..+..++++++. .+..    .++++|+|.| +|.+|..+++.++..|+ +|++++|++++.+.+.+++|.+ +++.  +
T Consensus       156 ~~~~sv~~~Av~-~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~-~~~~--~  230 (311)
T cd05213         156 RGAVSISSAAVE-LAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGN-AVPL--D  230 (311)
T ss_pred             CCCcCHHHHHHH-HHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCe-EEeH--H
Confidence            456777777774 3332    3689999999 79999999999988887 8999999988865554488873 3332  1


Q ss_pred             ccHHHHHHhhccCCc-ccccHHH----HHHHHHhhcCCCeEEEeeC
Q 029543          140 PDLDVALKRMFLCWV-DFVGIEY----CRSLLLVLLFRPLKIMEND  180 (192)
Q Consensus       140 ~~~~~~i~~~~~~g~-d~~g~~~----~~~~~~~l~~~G~v~~G~~  180 (192)
                       ++.+.+.+.  +-+ .+++.+.    ....++..+.++.+++-..
T Consensus       231 -~~~~~l~~a--DvVi~at~~~~~~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         231 -ELLELLNEA--DVVISATGAPHYAKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             -HHHHHHhcC--CEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence             344333321  212 6777442    3333333322456665543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12742 oxidoreductase; Provisional

Probab=97.53  E-value=0.00059  Score=52.39  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=44.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhcCCCee-eecCCcccHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLKNKFGFDDA-FNYKEEPDLDVALK  147 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~i~  147 (192)
                      .+++++|+||+|+||..+++.....|++|+.+.+ ++++.+.+.++++...+ .|..+...+.+.+.
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~   71 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVR   71 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHH
Confidence            4789999999999999999988889999887765 55666655435665433 34443313444343

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.53  E-value=0.0025  Score=51.01  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|++++|.| .|.+|..+++.++.+|++|++.+|++++.+.+. ++|.
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~g~  195 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLARIT-EMGL  195 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCC
Confidence            488999999 899999999999999999999999998877776 6664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.00042  Score=54.45  Aligned_cols=42  Identities=29%  Similarity=0.311  Sum_probs=37.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      ++++++|+||+|+||..+++.+...|++|++++|++++.+.+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   49 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA   49 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            588999999999999999988888999999999988776544

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.52  E-value=0.00033  Score=53.83  Aligned_cols=43  Identities=28%  Similarity=0.368  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++|+|+||+|++|..+++.+...|++|+.++|++++.+.+.
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   46 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK   46 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999999999999999999998877764

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.00084  Score=52.36  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..++.+++|+||+|++|..+++.+...|++|+.++|++++.+.+.
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~   52 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA   52 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            347899999999999999999888889999999999888777665

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.00076  Score=52.87  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.++++.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   52 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGE   52 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            478999999999999999988888899999999998877766545553

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.49  E-value=0.00062  Score=48.30  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=42.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+.+++|.| +|++|..++..+...|+ +|+++.|+.+|.+.+.++++.
T Consensus        11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~   58 (135)
T PF01488_consen   11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG   58 (135)
T ss_dssp             TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc
Confidence            589999999 79999999999999999 699999999999888767744

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.48  E-value=0.0023  Score=48.32  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=63.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcC-CCeeeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFG-FDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g-~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++|+-.| +|+ |.+++++++..+  .+|++++.+++.++.+++   .+| .+.+.... . +..+.+.+..
T Consensus        34 ~~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~-~-d~~~~l~~~~  109 (198)
T PRK00377         34 SKLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK-G-EAPEILFTIN  109 (198)
T ss_pred             HHcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE-e-chhhhHhhcC
Confidence            445788999999999 777 999999998764  489999999998887763   356 33322111 1 3333332221


Q ss_pred             cCCcccc----c----HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWVDFV----G----IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~d~~----g----~~~~~~~~~~l~~~G~v~~  177 (192)
                       +.+|.+    +    ...++.+.+.|+|+|++++
T Consensus       110 -~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        110 -EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             -CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence             123321    1    2377888899999996554

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.47  E-value=0.0025  Score=46.99  Aligned_cols=90  Identities=17%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCcccHHHHHHhhccCCc-cccc-----H
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEEPDLDVALKRMFLCWV-DFVG-----I  159 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~i~~~~~~g~-d~~g-----~  159 (192)
                      |+|.||+|.+|..+++.+...|.+|++++|++++.+.   ..+++.+ .|..+.+.+.+.++..  +.+ .++|     .
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~--d~vi~~~~~~~~~~   75 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGA--DAVIHAAGPPPKDV   75 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTS--SEEEECCHSTTTHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhc--chhhhhhhhhcccc
Confidence            7899999999999999999999999999999998776   2233322 2333321223222211  122 5555     3


Q ss_pred             HHHHHHHHhhcCCC--e-EEEeeCC
Q 029543          160 EYCRSLLLVLLFRP--L-KIMENDS  181 (192)
Q Consensus       160 ~~~~~~~~~l~~~G--~-v~~G~~~  181 (192)
                      ......++.++..|  + +.++..+
T Consensus        76 ~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   76 DAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             cccccccccccccccccceeeeccc
Confidence            46677778887777  4 4555543

...

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.00069  Score=52.91  Aligned_cols=45  Identities=13%  Similarity=0.144  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|+.++|++++.+.+.++
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~   50 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAA   50 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            478999999999999999988888899999999998877665534

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.45  E-value=0.0023  Score=50.87  Aligned_cols=104  Identities=19%  Similarity=0.238  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe---e--eecCC
Q 029543           67 PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDD---A--FNYKE  138 (192)
Q Consensus        67 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~---v--i~~~~  138 (192)
                      +=...+..+.+..++++|++||=+| + |-|.+++..|+..|++|++++.|++..+.+++   +.|...   +  -|++ 
T Consensus        56 AQ~~k~~~~~~kl~L~~G~~lLDiG-C-GWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r-  132 (283)
T COG2230          56 AQRAKLDLILEKLGLKPGMTLLDIG-C-GWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR-  132 (283)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeC-C-ChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc-
Confidence            4445555566788999999999999 4 45889999999999999999999998888774   345441   2  1232 


Q ss_pred             cccHHHHHHhhccCCc-ccccH----HHHHHHHHhhcCCCeE
Q 029543          139 EPDLDVALKRMFLCWV-DFVGI----EYCRSLLLVLLFRPLK  175 (192)
Q Consensus       139 ~~~~~~~i~~~~~~g~-d~~g~----~~~~~~~~~l~~~G~v  175 (192)
                        ++.+....+..=|+ +.+|.    ..+..+-+.|+|+|++
T Consensus       133 --d~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~  172 (283)
T COG2230         133 --DFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM  172 (283)
T ss_pred             --ccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence              34433333322233 77884    3788889999999953

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.00081  Score=54.89  Aligned_cols=43  Identities=23%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.+...|++|++++|++++++.+.
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~   48 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA   48 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999988889999999999998877654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.43  E-value=0.002  Score=53.71  Aligned_cols=105  Identities=19%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHH
Q 029543           67 PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVAL  146 (192)
Q Consensus        67 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i  146 (192)
                      +....+..+.+...+++|++||-+| + |.|.++..+++..|++|++++.+++.++.+++.. ...-++.... ++.+ +
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~-~~l~v~~~~~-D~~~-l  225 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC-AGLPVEIRLQ-DYRD-L  225 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-ccCeEEEEEC-chhh-c
Confidence            3344445555667889999999999 4 5788888999888999999999999999998433 2211221112 2221 1


Q ss_pred             HhhccCCc------ccccH----HHHHHHHHhhcCCCeEEE
Q 029543          147 KRMFLCWV------DFVGI----EYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       147 ~~~~~~g~------d~~g~----~~~~~~~~~l~~~G~v~~  177 (192)
                      .. .-+.+      +.+|.    ..++.+.+.|+|+|++++
T Consensus       226 ~~-~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl  265 (383)
T PRK11705        226 NG-QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL  265 (383)
T ss_pred             CC-CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            00 00111      44452    367888899999996543

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.43  E-value=0.00041  Score=56.37  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|++++|+||+++||...++.....|++|+.++|++++++.+.++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~   96 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS   96 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence            589999999999999988877767899999999999988776533

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.42  E-value=0.00071  Score=57.45  Aligned_cols=89  Identities=15%  Similarity=0.036  Sum_probs=63.0

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-ccccHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-DFVGIE  160 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-d~~g~~  160 (192)
                      -.|++|+|.| .|.||..+++.++.+|++|+++++++.+...+. ..|+..+       ++.+.++.  .+-+ .++|..
T Consensus       252 LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~~~-------~leell~~--ADIVI~atGt~  320 (476)
T PTZ00075        252 IAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQVV-------TLEDVVET--ADIFVTATGNK  320 (476)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCceec-------cHHHHHhc--CCEEEECCCcc
Confidence            4799999999 899999999999999999999998887765665 5565421       23332321  1111 556643


Q ss_pred             -HH-HHHHHhhcCCCe-EEEeeCC
Q 029543          161 -YC-RSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       161 -~~-~~~~~~l~~~G~-v~~G~~~  181 (192)
                       .+ ...++.|+++++ +.+|...
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCCc
Confidence             44 478899999995 5776653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.40  E-value=0.00067  Score=57.28  Aligned_cols=66  Identities=21%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             chhHHHHHHHHHHHhC---CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 029543           65 IMPSVTAFAGLYEICS---PKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~---~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      ..+..++++++.....   ..++++|+|+| +|.+|.++++.++..|+ +|+++++++++.+.+.+++|.+
T Consensus       160 ~~~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~  229 (423)
T PRK00045        160 AGAVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE  229 (423)
T ss_pred             CCCcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc
Confidence            3466777888743322   25789999999 89999999999999998 8999999998876554378864

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.00058  Score=53.71  Aligned_cols=45  Identities=22%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|++++|+||+++||..+++.+...|++|++++|++++++.+.++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   51 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREK   51 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            478999999999999999988888999999999998877665533

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.00061  Score=53.00  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=39.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+++++|+||+|++|..+++.+...|++|++++|++++++.+.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~   50 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELR   50 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35799999999999999999888888999999999998877665

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0011  Score=51.20  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=45.3

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC--CC-eeeecCCcccHHHHHHh
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG--FD-DAFNYKEEPDLDVALKR  148 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g--~~-~vi~~~~~~~~~~~i~~  148 (192)
                      .+++|+||+|++|..+++.....|++|++++|++++++.+. +.+  .. ...|..+.+++.+.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~   67 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH-TQSANIFTLAFDVTDHPGTKAALSQ   67 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HhcCCCeEEEeeCCCHHHHHHHHHh
Confidence            57999999999999888777778999999999998888776 432  11 12455544244444443

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.39  E-value=0.0037  Score=53.01  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHhcCCCe-eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS--KEKVDLLKNKFGFDD-AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~--~~~~~~~~~~~g~~~-vi~~~~~  139 (192)
                      ++++++|+|++|++|..+++.....|++|++++++  .++++.+.++++... .+|..+.
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~  268 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAP  268 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCH
Confidence            57899999999999999999888899999999874  344444443566543 3565554

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.00085  Score=52.18  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|+.++|++++.+.+.
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   46 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA   46 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888889999999999988766654

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0013  Score=50.82  Aligned_cols=49  Identities=10%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      ++++++|+||+|++|..+++.....|++|++++|++++.+.+.++++..
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~   53 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGES   53 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCc
Confidence            4789999999999999999988889999999999988777665466653

>PRK09186 flagellin modification protein A; Provisional

Probab=97.36  E-value=0.0014  Score=50.98  Aligned_cols=46  Identities=24%  Similarity=0.344  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..++......|++|+.++|++++.+.+.+++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   48 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL   48 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence            5789999999999999999888888999999999988776654343

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0015  Score=51.58  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=38.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|++++++.+.
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~   45 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFE   45 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHH
Confidence            3678999999999999999888888999999999998887776

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.00076  Score=52.89  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+.+++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~   51 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVA   51 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999988889999999999988766554

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.00079  Score=53.90  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|++++++.+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~   81 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA   81 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4688999999999999999888888999999999988876665

>PRK05717 oxidoreductase; Validated

Probab=97.32  E-value=0.0017  Score=50.56  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=38.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|++++|+||+|+||..+++.....|++|+.+++++++.+.+.++++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~   55 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG   55 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC
Confidence            47899999999999999998887889999999988776665543554

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0015  Score=50.16  Aligned_cols=54  Identities=11%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCc
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEE  139 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~  139 (192)
                      +++|+||+|++|..+++.....|++|+.++|++++++.+.++++...+ .|..++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~   56 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDP   56 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCH
Confidence            589999999999999988888899999999998887776545554332 454443

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.30  E-value=0.00034  Score=58.93  Aligned_cols=101  Identities=12%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             hhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHH---HHhCCCCCCE
Q 029543           10 KRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLY---EICSPKKGEY   86 (192)
Q Consensus        10 ~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~---~~~~~~~g~~   86 (192)
                      ++.|......|..+.+.|.+++.+.... .          ..     ..+..    .+...++.++.   +.....++++
T Consensus       123 ~~~a~~~~~~g~~l~~lf~~a~~~~k~v-r----------~~-----t~i~~----~~vSv~~~Av~la~~~~~~l~~~~  182 (417)
T TIGR01035       123 YKVAQEEKTVGKVLERLFQKAFSVGKRV-R----------TE-----TDISA----GAVSISSAAVELAERIFGSLKGKK  182 (417)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHhhhh-h----------hh-----cCCCC----CCcCHHHHHHHHHHHHhCCccCCE
Confidence            5667777777777777776666543311 0          00     00101    12333334431   2333457899


Q ss_pred             EEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      |+|+| +|.+|..+++.++..|+ +|++++|+.++.+.+.+++|..
T Consensus       183 VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~  227 (417)
T TIGR01035       183 ALLIG-AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE  227 (417)
T ss_pred             EEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe
Confidence            99999 79999999999999995 8999999988866444377764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.30  E-value=0.0018  Score=50.42  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|++|..+++.....|++|+.++++.++.+.+.++++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~   51 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG   51 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC
Confidence            46789999999999999998888889999999999988777664444

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0017  Score=50.45  Aligned_cols=43  Identities=14%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+.++|+++..+...
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~   56 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAA   56 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999877655554

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0009  Score=52.06  Aligned_cols=43  Identities=23%  Similarity=0.384  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+.++|++++.+.+.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   47 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV   47 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988877664

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.29  E-value=0.00091  Score=51.71  Aligned_cols=46  Identities=20%  Similarity=0.319  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+.+++|+||+|++|..+++.....|++|++++|++++.+.+.+.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEI   49 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4679999999999999999888888999999999988777665343

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.00092  Score=52.02  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|++++|+||+|++|..+++.....|++|++++|++++.+.+.++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE   52 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            478999999999999999988888899999999998877666533

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.00092  Score=52.36  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||++++|..+++.....|++|++++|++++++.+.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   49 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAE   49 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            4789999999999999999888889999999999988776554

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.00092  Score=54.03  Aligned_cols=43  Identities=21%  Similarity=0.230  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+++||..+++.....|++|+.++|++++.+.+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~   55 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAV   55 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999877778999999999988766554

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.28  E-value=0.0022  Score=48.19  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+.+++|.|++|++|..+++.+...|++|+.+.|+.++.+.+.+++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l   72 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL   72 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            5789999998999999888887778899999999998877766344

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0022  Score=50.09  Aligned_cols=45  Identities=16%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +.+++|+||+|++|..+++.....|++|+++++++++++.+.+++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   46 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARL   46 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            468999999999999999887778999999999988877665343

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.27  E-value=0.0025  Score=46.49  Aligned_cols=103  Identities=15%  Similarity=0.086  Sum_probs=61.2

Q ss_pred             HHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhc
Q 029543           72 FAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        72 ~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      +.++.+..+ .-.|++++|.| =|-+|.-+++.+|.+|++|++++..|-+.-.+. .-|.+..       .+.+.+.+  
T Consensus        10 ~d~i~r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~v~-------~~~~a~~~--   78 (162)
T PF00670_consen   10 VDGIMRATNLMLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFEVM-------TLEEALRD--   78 (162)
T ss_dssp             HHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-EEE--------HHHHTTT--
T ss_pred             HHHHHhcCceeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcEec-------CHHHHHhh--
Confidence            344434333 44799999999 999999999999999999999999998777766 5566422       23222221  


Q ss_pred             cCCc--ccccHH--HHHHHHHhhcCCCeE-EEeeCCCCCcc
Q 029543          151 LCWV--DFVGIE--YCRSLLLVLLFRPLK-IMENDSGSTPI  186 (192)
Q Consensus       151 ~~g~--d~~g~~--~~~~~~~~l~~~G~v-~~G~~~~~~~~  186 (192)
                       ..+  .++|..  ...+-++.|+.+-++ .+|....+..+
T Consensus        79 -adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~  118 (162)
T PF00670_consen   79 -ADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDV  118 (162)
T ss_dssp             --SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred             -CCEEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEee
Confidence             122  566753  345677888777754 56665555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.27  E-value=0.001  Score=51.40  Aligned_cols=43  Identities=12%  Similarity=0.252  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+|++|++|+.+++.+...|++|+.+++++++.+.+.
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~   46 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV   46 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999988889999999999987766554

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.001  Score=52.10  Aligned_cols=45  Identities=27%  Similarity=0.276  Sum_probs=38.3

Q ss_pred             CCCCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           81 PKKGEYVYVSAASG-AVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G-~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +..+++++|+||+| ++|..+++.+...|++|+++++++++++...
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~   59 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETA   59 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            34578999999886 8999999999899999999999887766554

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0014  Score=50.05  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=37.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ++++|+|++|++|..+++.....|++|++++|++++.+.++ ++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~   44 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-AL   44 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH-hc
Confidence            57999999999999988877788999999999988776666 44

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0017  Score=50.66  Aligned_cols=44  Identities=11%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ++++|+||+|++|..+++.....|++|++++|++++.+.+.+.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   45 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL   45 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Confidence            57999999999999999877788999999999998887776344

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.001  Score=51.74  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.+...|++|++++|++++.+.++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   43 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALR   43 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            468999999999999999998889999999999887766654

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0011  Score=51.45  Aligned_cols=43  Identities=21%  Similarity=0.389  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+.+++++++.+.+.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~   49 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVA   49 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4689999999999999999988888999999999987766655

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0011  Score=51.14  Aligned_cols=43  Identities=23%  Similarity=0.307  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+|++|++|..+++.....|++|++++|++++.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVY   47 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHH
Confidence            4689999999999999999888888999999999998776654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.23  E-value=0.0012  Score=51.41  Aligned_cols=43  Identities=19%  Similarity=0.236  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.+...|++|+.++|++++.+.+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   51 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA   51 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888888999999999987765544

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0011  Score=50.78  Aligned_cols=40  Identities=15%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      +++++||+||+|++|..+++.....|++|++++|++++.+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~   45 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS   45 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH
Confidence            4789999999999999999888888999999999876543

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0013  Score=53.80  Aligned_cols=43  Identities=26%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|++++++.+.
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~   49 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA   49 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999888888999999999988776654

>PRK06484 short chain dehydrogenase; Validated

Probab=97.21  E-value=0.0022  Score=55.34  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i  146 (192)
                      .+++++|+||+++||..+++.....|++|+.++|+.++++.+.++++...   .+|..+++++.+.+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   70 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGF   70 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHH
Confidence            57899999999999999998888899999999999988877764666432   34555442343333

>PRK06194 hypothetical protein; Provisional

Probab=97.20  E-value=0.0013  Score=52.17  Aligned_cols=43  Identities=14%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+.++||+||+|+||..+++.....|++|++++++.++++.+.
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   47 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV   47 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            4688999999999999999888888999999999877665554

>PRK06196 oxidoreductase; Provisional

Probab=97.20  E-value=0.0013  Score=53.11  Aligned_cols=46  Identities=17%  Similarity=0.170  Sum_probs=38.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++|+|+||+|++|..+++.....|++|++++|++++.+.+.+++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l   70 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI   70 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            4789999999999999999877788999999999988776654343

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0027  Score=48.38  Aligned_cols=54  Identities=19%  Similarity=0.286  Sum_probs=42.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCCc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD-DAFNYKEE  139 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-~vi~~~~~  139 (192)
                      ++++|+|++|++|..+++.....|++|+.+++++++.+.++ ..+.. ...|..+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~   56 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ-ALGAEALALDVADP   56 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH-hccceEEEecCCCH
Confidence            47999999999999999877778999999999988888777 55543 23454444

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0013  Score=51.44  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      ++.+++|+||+|++|..+++.....|++|++++|++++.+.+.++
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   48 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAAR   48 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            478899999999999999988888899999999998887776534

>PRK06484 short chain dehydrogenase; Validated

Probab=97.19  E-value=0.0024  Score=55.02  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~  139 (192)
                      .|++++|+||+++||..+++.....|++|++++|++++++.+.++++...   ..|..++
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~  327 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDE  327 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCH
Confidence            57899999999999999998888889999999999988888775565432   2455544

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0014  Score=51.95  Aligned_cols=43  Identities=16%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+++++++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~   47 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAV   47 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888888999999999987766554

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0014  Score=50.26  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+.+++|+||+|++|..+++.+...|++|++++|++++.+.+.+++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL   50 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHH
Confidence            4689999999999999999877778999999999988776665344

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.17  E-value=0.0014  Score=50.69  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..++++++|+|++|++|..+++.....|++|++++|+.++.+.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~   53 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVY   53 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Confidence            447899999999999999999877778999999999987655443

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.17  E-value=0.0014  Score=52.97  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l   50 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL   50 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            4789999999999999999888778999999999988877665454

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0015  Score=50.72  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+.++|++++.+.+.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   48 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETV   48 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999877778999999999987755443

>PLN02253 xanthoxin dehydrogenase

Probab=97.16  E-value=0.0032  Score=49.76  Aligned_cols=46  Identities=11%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|+||..+++.....|++|+++++++++.+.+.+++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~   62 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL   62 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh
Confidence            4789999999999999999877778999999999877666555344

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.16  E-value=0.0027  Score=48.77  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=36.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV-DLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~-~~~~~~~g~  130 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++. +.++ +.+.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~   48 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR-QAGA   48 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH-HcCC
Confidence            46899999999999999988888899999999886543 3333 4554

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0014  Score=50.90  Aligned_cols=42  Identities=24%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      |++++|+|++|++|..+++.....|++|++++|++++.+.+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~   42 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAK   42 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            578999999999999999988889999999999987766654

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.14  E-value=0.0036  Score=48.00  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=37.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~   46 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA   46 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence            4578999999999999999888888999999999988765543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.14  E-value=0.0016  Score=50.83  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+.++++.++.+.+.
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   53 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAA   53 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776655

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.13  E-value=0.0032  Score=48.87  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=38.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +++|+||+|++|..+++.+...|++|++++|++++++.+.+.++.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   46 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGD   46 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcc
Confidence            689999999999999988888899999999999888777644554

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.13  E-value=0.0014  Score=56.90  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+.+.|++|+|+||+|++|..+++.+...|++|++++|+.++.+.+.
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~  121 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV  121 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            445668999999999999999999888888999999999988876554

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0017  Score=50.66  Aligned_cols=43  Identities=23%  Similarity=0.402  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+|+++++|..+++.....|++|++++|++++.+.+.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   48 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALA   48 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0015  Score=51.02  Aligned_cols=44  Identities=11%  Similarity=0.047  Sum_probs=35.4

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEK-VDLL  124 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~-~~~~  124 (192)
                      +..+++|+|+||+|++|..+++-+... |++|++++|++++ ++.+
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~   50 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAA   50 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHH
Confidence            456789999999999999998766556 4899999998775 4443

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0016  Score=52.27  Aligned_cols=42  Identities=21%  Similarity=0.216  Sum_probs=36.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+++|+|+||+|+||..+++.....|++|++++|+.++.+.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~   56 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAA   56 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999987777899999999998776544

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.12  E-value=0.0017  Score=50.44  Aligned_cols=43  Identities=14%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .++++||+||+|++|..+++.....|++|+.++|++++.+.+.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~   50 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAV   50 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            4789999999999999999888788999999999987766554

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.12  E-value=0.0018  Score=50.45  Aligned_cols=43  Identities=16%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .++++||+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVA   48 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            4789999999999999999888889999999999987665544

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.002  Score=49.77  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..++......|++|+++++++++.+.+.
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA   48 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988766554

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.08  E-value=0.0021  Score=50.01  Aligned_cols=43  Identities=16%  Similarity=0.254  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|+.++|++++++.+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~   52 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAV   52 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence            5889999999999999999877778999999999987665544

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0043  Score=48.89  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=38.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +++||+||+|++|..+++.....|++|++++|++++.+.+++..+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~   47 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG   47 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc
Confidence            579999999999999998777889999999999988887763433

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0031  Score=49.14  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~  122 (192)
                      .+++++|+||+|++|..+++.+...|++ |++++|++++.+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE   45 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence            5789999999999999999988889997 999999877655

>PRK09242 tropinone reductase; Provisional

Probab=97.07  E-value=0.0022  Score=49.99  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~   50 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQAR   50 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0021  Score=50.24  Aligned_cols=42  Identities=24%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +.+++|+||+|++|..+++.+...|++|++++|++++.+.+.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~   42 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLA   42 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            357999999999999999888888999999999987655443

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.06  E-value=0.0047  Score=48.14  Aligned_cols=37  Identities=30%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~   43 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL   43 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH
Confidence            4789999999999999999888888999999998854

>PRK08643 acetoin reductase; Validated

Probab=97.05  E-value=0.0021  Score=50.02  Aligned_cols=42  Identities=14%  Similarity=0.115  Sum_probs=36.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.....|++|+.++|++++.+.+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~   43 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA   43 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            578999999999999999888888999999999987766554

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.05  E-value=0.0055  Score=46.69  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=70.1

Q ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCCcccHHH---HHHhhccCCc---
Q 029543           83 KGEYVYVSA-ASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD-DAFNYKEEPDLDV---ALKRMFLCWV---  154 (192)
Q Consensus        83 ~g~~VlV~G-a~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~---~i~~~~~~g~---  154 (192)
                      ..+.|||+| +.||||..++.=....|+.|+++.|+-++.+.+..++|.. .-+|..+++++.+   ++++.+.+.+   
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            346788886 4689999888777778999999999999888887577764 2356555434433   3444332221   


Q ss_pred             ------ccccH--------------------HHHHHHH--HhhcCCC-eEEEeeCCCCCcccccc
Q 029543          155 ------DFVGI--------------------EYCRSLL--LVLLFRP-LKIMENDSGSTPIPFAF  190 (192)
Q Consensus       155 ------d~~g~--------------------~~~~~~~--~~l~~~G-~v~~G~~~~~~~~~~~~  190 (192)
                            .|++.                    --+.+++  ...+..| +|.+|...+-.|+||.-
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~  150 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGS  150 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhh
Confidence                  23221                    1122333  3466778 67899988888888753

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.04  E-value=0.0012  Score=44.65  Aligned_cols=44  Identities=30%  Similarity=0.425  Sum_probs=36.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ||++||-.| +| .|.++..+++. .+++|++++.+++-++.+++..
T Consensus         1 p~~~vLDlG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~   45 (112)
T PF12847_consen    1 PGGRVLDLG-CG-TGRLSIALARLFPGARVVGVDISPEMLEIARERA   45 (112)
T ss_dssp             TTCEEEEET-TT-TSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEEc-Cc-CCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            588999998 44 48889999984 6789999999999999988554

...

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.04  E-value=0.0095  Score=44.48  Aligned_cols=92  Identities=15%  Similarity=-0.012  Sum_probs=55.1

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCee-eecCCcccHHHHHHhhccC-Ccc
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEEPDLDVALKRMFLC-WVD  155 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~i~~~~~~-g~d  155 (192)
                      ..+++|++||..| +|+-+.......+..+ .+|++++.++.+    + ..+++.+ .|..+. +..+.+.+..++ ++|
T Consensus        28 ~~i~~g~~VLDiG-~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-~~~i~~~~~d~~~~-~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        28 KLIKPGDTVLDLG-AAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-IENVDFIRGDFTDE-EVLNKIRERVGDDKVD  100 (188)
T ss_pred             cccCCCCEEEEec-CCCCHHHHHHHHHhCCCceEEEEeccccc----c-CCCceEEEeeCCCh-hHHHHHHHHhCCCCcc
Confidence            4568999999999 6776654444444434 389999998754    2 2344322 244333 444445444333 342


Q ss_pred             -----c----cc-------------HHHHHHHHHhhcCCCeEEE
Q 029543          156 -----F----VG-------------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       156 -----~----~g-------------~~~~~~~~~~l~~~G~v~~  177 (192)
                           .    .|             ...+..+.+.|+|+|++++
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi  144 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV  144 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence                 2    12             2367788999999996544

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.03  E-value=0.0072  Score=45.80  Aligned_cols=48  Identities=23%  Similarity=0.270  Sum_probs=41.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      -.|.+|+|+| .|.+|..+++.+...|++|+++++++++.+.+++.+|+
T Consensus        26 l~gk~v~I~G-~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          26 LEGKTVAVQG-LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            3578999999 89999999999999999999999999988887745564

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.03  E-value=0.0046  Score=47.78  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||+|+||..+++.+...|++|+.++|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            478999999999999999988888899999999875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.02  E-value=0.014  Score=44.76  Aligned_cols=99  Identities=16%  Similarity=0.095  Sum_probs=69.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCC-cccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDDAFNYKE-EPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~-~~~~~~~i~~~~  150 (192)
                      ...+....++||=+|  ..+|..++.+|..+.  .+++.+++++++.+.+++   +.|.+..|..-. . +..+.+.+..
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g-dal~~l~~~~  129 (219)
T COG4122          53 LLARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG-DALDVLSRLL  129 (219)
T ss_pred             HHHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC-cHHHHHHhcc
Confidence            345566788999998  677889999999876  489999999999999874   457665332221 2 5555565522


Q ss_pred             cCCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          151 LCWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 ~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      .+.+     |+--   .+.++.+++.|++||++++-
T Consensus       130 ~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         130 DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            2233     4443   34899999999999976654

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0024  Score=50.25  Aligned_cols=43  Identities=16%  Similarity=0.157  Sum_probs=37.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|++++.+.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA   48 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            4789999999999999999988889999999999887665544

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.01  E-value=0.0024  Score=49.51  Aligned_cols=43  Identities=21%  Similarity=0.227  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+|++|++|..+++.....|++|++++|++++.+.+.
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   45 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA   45 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            4679999999999999999887788999999999988766554

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.003  Score=48.66  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+++++|+|++|++|..+++.+...|++|++++|++++.+.+.
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   47 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA   47 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            34678999999999999999888888999999999987766654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.01  E-value=0.0026  Score=50.22  Aligned_cols=43  Identities=21%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|+.+++.....|++|++++|++++.+.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   51 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVV   51 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999887665554

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0027  Score=49.07  Aligned_cols=42  Identities=17%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~   43 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK   43 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            568999999999999888777778999999999988776654

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.99  E-value=0.0026  Score=49.12  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=35.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+.+++|+||+|++|..+++.....|++|++++|++++.+.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~   46 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT   46 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467999999999999999988778899999999997655443

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.98  E-value=0.0032  Score=45.57  Aligned_cols=40  Identities=23%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC--HHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGS--KEKVDLL  124 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~--~~~~~~~  124 (192)
                      ++++|+||++++|..+++.....|+ +|+.+.|+  .++.+.+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l   43 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQEL   43 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccc
Confidence            4799999999999998877776777 88999988  5555544

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.98  E-value=0.0024  Score=49.42  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=36.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++++||+||+|++|..++......|++|++++|++++.+.+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~   42 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAA   42 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            357999999999999999888788999999999988776665

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.003  Score=48.87  Aligned_cols=43  Identities=21%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+.+++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~   47 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA   47 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4788999999999999999888788999999999877655543

>PRK08589 short chain dehydrogenase; Validated

Probab=96.97  E-value=0.0028  Score=49.99  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=34.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+++++|+||++++|..+++.....|++|++++++ ++.+.+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~   45 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSET   45 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHH
Confidence            47899999999999999998777889999999998 544443

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0028  Score=49.07  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+...
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   46 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVA   46 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHH
Confidence            4679999999999999999877778999999999987766554

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.96  E-value=0.0032  Score=48.42  Aligned_cols=42  Identities=19%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+.+++|+|++|++|..++..+...|++|++++|++++.+.+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~   47 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV   47 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367899999999999999988778899999999998766554

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.96  E-value=0.012  Score=43.81  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=61.3

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccCC
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ...+++|+.++=+|+  +.|...+++++..-. +|+++++++++++..++   +||.+.+.-...  +-.+.+.+..  .
T Consensus        29 ~L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g--~Ap~~L~~~~--~  102 (187)
T COG2242          29 KLRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG--DAPEALPDLP--S  102 (187)
T ss_pred             hhCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec--cchHhhcCCC--C
Confidence            346789998888883  347788899965544 99999999998888763   678775422221  2222233221  1


Q ss_pred             cc--cccH-----HHHHHHHHhhcCCCeEEE
Q 029543          154 VD--FVGI-----EYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~d--~~g~-----~~~~~~~~~l~~~G~v~~  177 (192)
                      +|  ++|+     ..++.+++.|+++|++++
T Consensus       103 ~daiFIGGg~~i~~ile~~~~~l~~ggrlV~  133 (187)
T COG2242         103 PDAIFIGGGGNIEEILEAAWERLKPGGRLVA  133 (187)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHcCcCCeEEE
Confidence            23  2332     388899999999996543

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.003  Score=49.87  Aligned_cols=43  Identities=23%  Similarity=0.212  Sum_probs=37.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   44 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLL   44 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            3678999999999999999888888999999999987766554

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.94  E-value=0.0031  Score=49.11  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=36.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.....|++|+.++++.++.+.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~   43 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVA   43 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            578999999999999999888888999999999887665543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0044  Score=47.03  Aligned_cols=94  Identities=18%  Similarity=0.094  Sum_probs=61.2

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccC-
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLC-  152 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~-  152 (192)
                      +...+++|++||-+|  .|.|..++-+|+..+ +|+.+.+.++=.+.+++   .+|.+.|.-...+  -   .+.+... 
T Consensus        66 ~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD--G---~~G~~~~a  137 (209)
T COG2518          66 QLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD--G---SKGWPEEA  137 (209)
T ss_pred             HHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC--c---ccCCCCCC
Confidence            667899999999999  456999999999888 99999998875555542   5777553222111  0   0111111 


Q ss_pred             Ccc-----cccHHHHHHHHHhhcCCCeE--EEe
Q 029543          153 WVD-----FVGIEYCRSLLLVLLFRPLK--IME  178 (192)
Q Consensus       153 g~d-----~~g~~~~~~~~~~l~~~G~v--~~G  178 (192)
                      .+|     +...+.-+..++.|++||++  -+|
T Consensus       138 PyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         138 PYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            124     22233556778999999953  456

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0031  Score=48.59  Aligned_cols=43  Identities=9%  Similarity=0.169  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||++++|..+++-....|++|+.++|++++++.+.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~   46 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTY   46 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4789999999999999988877778999999999998876654

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0025  Score=49.67  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=36.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|.+++|+||+|++|..+++.....|++|+++++++++.+..+
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAE   48 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHH
Confidence            4789999999999999999887788999999999887764433

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0032  Score=48.63  Aligned_cols=41  Identities=15%  Similarity=0.220  Sum_probs=35.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~   42 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA   42 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            57999999999999999888888999999999988766543

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0032  Score=49.56  Aligned_cols=40  Identities=10%  Similarity=0.165  Sum_probs=34.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++|+||+|++|..+++.+...|++|+++++++++.+.+.
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~   41 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV   41 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6999999999999999888888999999999887765543

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.89  E-value=0.0072  Score=47.07  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||+++||..+++.....|++|+++++++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            578999999999999999988888999999988764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.89  E-value=0.0033  Score=49.11  Aligned_cols=40  Identities=28%  Similarity=0.250  Sum_probs=35.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++|+||++++|..+++.....|++|+.++|++++++.+.
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   41 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL   41 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999888888999999999988776654

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0079  Score=47.44  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +++|+|+||+|++|..+++.+...|++|++++|++++++.+.+.+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   47 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY   47 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence            568999999999999999888778999999999988877766343

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.88  E-value=0.0041  Score=50.28  Aligned_cols=46  Identities=24%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD  132 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  132 (192)
                      +|+|+||+|-+|..+++.+...|.+|++++|+.++...+. ..+.+.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~~~v~~   47 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-EWGAEL   47 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-hcCCEE
Confidence            6999999999999999888888999999999987766655 556543

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0065  Score=47.03  Aligned_cols=41  Identities=20%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK-EKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~-~~~~~~~  125 (192)
                      ++++|+||+|++|..+++.....|++|++++|++ ++++.+.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~   43 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLA   43 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH
Confidence            4799999999999999988777899999999886 5555544

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.88  E-value=0.0075  Score=47.30  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||++  +||..+++.....|++|+.+++++
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~   44 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE   44 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence            578999999887  899999887777899999988874

>PRK08264 short chain dehydrogenase; Validated

Probab=96.88  E-value=0.0025  Score=48.94  Aligned_cols=40  Identities=28%  Similarity=0.354  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~  122 (192)
                      .+.+++|+||+|++|..+++.+...|+ +|++++|++++.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT   45 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence            468999999999999999998888999 9999999877654

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.86  E-value=0.004  Score=48.07  Aligned_cols=43  Identities=16%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++.++||+||+|++|..+++.....|++|+.++++.++.+.+.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   44 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVA   44 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence            4788999999999999999888888999999999987766554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.86  E-value=0.021  Score=38.97  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH---hcCCCe--eeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKN---KFGFDD--AFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~---~~g~~~--vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++|+-.| +|. |..+..+++..+ .+|++++.++...+.+++   +++...  ++..+    ..+......
T Consensus        13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~   86 (124)
T TIGR02469        13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD----APEALEDSL   86 (124)
T ss_pred             HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc----ccccChhhc
Confidence            344667788999999 666 999999999875 499999999998888763   344432  22221    111011110


Q ss_pred             cCCcccc-----c---HHHHHHHHHhhcCCCeEEEe
Q 029543          151 LCWVDFV-----G---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 ~~g~d~~-----g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                       +.+|.+     .   ...++.+.+.|+++|++++.
T Consensus        87 -~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        87 -PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             -CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence             122211     1   24788899999999976543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0038  Score=48.74  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+.+++|+||+|++|..+++.+...|++|+.++|+++..+.+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~   46 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLA   46 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence            478999999999999999988888899999999887544333

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.84  E-value=0.0093  Score=45.82  Aligned_cols=47  Identities=26%  Similarity=0.405  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      ++.+++|+||+|++|..+++.....|++|+..+++.++++.+.+.++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~   51 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG   51 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC
Confidence            47899999999999999998888889999999988887776653444

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.0076  Score=46.90  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+|++++||..+++.....|++|++++++++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~   43 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD   43 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4789999999999999999888889999999998753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.84  E-value=0.0072  Score=47.90  Aligned_cols=57  Identities=11%  Similarity=0.170  Sum_probs=40.7

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCCCe--eeecCCc
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSK---EKVDLLKNKFGFDD--AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~---~~~~~~~~~~g~~~--vi~~~~~  139 (192)
                      .|++++|+||+  ++||+.+++.....|++|+.++|++   ++++.+.++++...  .+|..+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   67 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKP   67 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCH
Confidence            47899999986  7999999988778899999999885   34444433555432  2455543

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.83  E-value=0.0037  Score=48.73  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .++++||+||+|++|..+++.....|++|++++++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999998888889999999887

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0046  Score=48.12  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +++++|+||+|++|..++......|++|++++|++++.+.+.+++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~   46 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL   46 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            568999999999999999877778999999999988776655343

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.81  E-value=0.0072  Score=47.12  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=34.8

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+  ++||..+++.....|++|+.++|+++..+.++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~   50 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ   50 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHH
Confidence            57899999988  79999999877778999999998754344444

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.79  E-value=0.0047  Score=49.04  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=39.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+.++|+|++.+||..++......|++|+.++|++++.+..+++
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~   51 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQE   51 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            588999999999999998888888999999999999987766533

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.78  E-value=0.0055  Score=45.04  Aligned_cols=48  Identities=29%  Similarity=0.293  Sum_probs=40.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      .-+|+|+| +|.+|+.++++++.+|++|+..+.++++++.+. ..+...+
T Consensus        20 p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~-~~~~~~i   67 (168)
T PF01262_consen   20 PAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERPERLRQLE-SLGAYFI   67 (168)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH-HTTTEES
T ss_pred             CeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhh-cccCceE
Confidence            36799999 999999999999999999999999999988887 7776543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06720 hypothetical protein; Provisional

Probab=96.77  E-value=0.0065  Score=44.77  Aligned_cols=42  Identities=14%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+..++|+||++++|..++......|++|+++++++++.+.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~   56 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQAT   56 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578999999999999999887777899999999987766544

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.76  E-value=0.0054  Score=47.72  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=37.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++|+|+||+|++|..+++.....|++|+.+++++++.+.+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~   52 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV   52 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            4789999999999999999888788999999999887765543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.75  E-value=0.026  Score=46.02  Aligned_cols=95  Identities=20%  Similarity=0.171  Sum_probs=62.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      +...++++++||..| +| .|..++.+++..+.  +|++++.+++.++.+++   +.|.+.+.... . |..+...+.  
T Consensus        74 ~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~-g-D~~~~~~~~--  147 (322)
T PRK13943         74 EWVGLDKGMRVLEIG-GG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC-G-DGYYGVPEF--  147 (322)
T ss_pred             HhcCCCCCCEEEEEe-CC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-C-Chhhccccc--
Confidence            455788999999999 66 59999999998764  69999999987777663   35665443222 2 332222111  


Q ss_pred             CCcc----ccc-HHHHHHHHHhhcCCCeEEE
Q 029543          152 CWVD----FVG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~g~d----~~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      +.+|    +.+ .......++.|+++|++++
T Consensus       148 ~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        148 APYDVIFVTVGVDEVPETWFTQLKEGGRVIV  178 (322)
T ss_pred             CCccEEEECCchHHhHHHHHHhcCCCCEEEE
Confidence            1222    334 2455677899999996433

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.74  E-value=0.0058  Score=48.65  Aligned_cols=61  Identities=16%  Similarity=0.249  Sum_probs=41.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHhcC-C-CeeeecCCcccHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL----LKNKFG-F-DDAFNYKEEPDLD  143 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~----~~~~~g-~-~~vi~~~~~~~~~  143 (192)
                      ..|+.|||+||++|+|...++=...+|++++..|.+.+-.+.    ++ +.| + ..+.|..+.+++.
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~-~~g~~~~y~cdis~~eei~  102 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIR-KIGEAKAYTCDISDREEIY  102 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHH-hcCceeEEEecCCCHHHHH
Confidence            369999999999999987776555578999999988654333    33 334 1 2456655432443

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.74  E-value=0.0056  Score=49.51  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +++++|+||+++||..+++.....| ++|+.++|++++.+.+.++++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~   49 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG   49 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            6789999999999999888777789 899999999887766654543

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.73  E-value=0.0068  Score=45.01  Aligned_cols=40  Identities=25%  Similarity=0.349  Sum_probs=35.7

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      -.|.+|.|+| .|.||+.+++.++.+|++|++.+++.+..+
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhh
Confidence            3689999999 999999999999999999999999987655

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.73  E-value=0.0052  Score=49.85  Aligned_cols=47  Identities=23%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|.+++|+||++|||...++-....|++|+.+.|+.++.+.+++++.
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~   80 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQ   80 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence            57899999999999999998888889999999999987777764443

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.72  E-value=0.011  Score=45.93  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHHhcCCCe-eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLKNKFGFDD-AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~~~~g~~~-vi~~~~~  139 (192)
                      .+++++|+||+|++|..+++.....|++|+++.++ ++..+.++ +.+... ..|..++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~-~~~~~~~~~Dl~~~   63 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR-EKGVFTIKCDVGNR   63 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-hCCCeEEEecCCCH
Confidence            47899999999999999998888889998887654 44445554 334322 2354443

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.72  E-value=0.006  Score=47.81  Aligned_cols=43  Identities=26%  Similarity=0.239  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+|+++++|..++......|++|+.+++++++.+.+.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~   51 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGL   51 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            5789999999999999888877788999999999987766544

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.004  Score=48.38  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            47899999999999999998888889999999988764

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.0055  Score=47.37  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|+.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999999999988888899999998875

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.0051  Score=49.62  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+++||..+++.....|++|++++|+
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            47899999999999999998888889999999987

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.69  E-value=0.01  Score=46.92  Aligned_cols=49  Identities=12%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             CCCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCC
Q 029543           82 KKGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSK---EKVDLLKNKFGF  130 (192)
Q Consensus        82 ~~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~---~~~~~~~~~~g~  130 (192)
                      ..+++++|+||+  ++||..+++.....|++|+.+.|++   ++++.+.++++.
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~   61 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA   61 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC
Confidence            357899999986  7999999988888999999888764   444444435553

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.69  E-value=0.0054  Score=51.52  Aligned_cols=41  Identities=34%  Similarity=0.472  Sum_probs=35.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~  123 (192)
                      .+++++|+||+|++|..+++.....|++|+++++++++++.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~  217 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITL  217 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999999999998777789999999998776543

>PRK04148 hypothetical protein; Provisional

Probab=96.69  E-value=0.0097  Score=42.09  Aligned_cols=51  Identities=20%  Similarity=0.173  Sum_probs=40.6

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~  135 (192)
                      ..+.++++.| .| .|...++..+..|.+|+++|.+++..+.++ +.+.+.+.+
T Consensus        15 ~~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-~~~~~~v~d   65 (134)
T PRK04148         15 GKNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAK-KLGLNAFVD   65 (134)
T ss_pred             ccCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHH-HhCCeEEEC
Confidence            3568899999 88 887555555577999999999999999998 777755543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.0064  Score=52.34  Aligned_cols=49  Identities=16%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+.+|++|+|.| .|..|++++++++..|++|+++|+++.+.+.++ ++|+
T Consensus         8 ~~~~~~~v~V~G-~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~-~~g~   56 (488)
T PRK03369          8 PLLPGAPVLVAG-AGVTGRAVLAALTRFGARPTVCDDDPDALRPHA-ERGV   56 (488)
T ss_pred             cccCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-hCCC
Confidence            355789999999 899999999999999999999998877776666 5554

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.0039  Score=48.58  Aligned_cols=37  Identities=24%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++++|+||+|++|..+++.....|++|++++|+++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4789999999999999999888888999999998764

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.67  E-value=0.013  Score=46.68  Aligned_cols=48  Identities=17%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ....+++++|.| +||.+++++..++..|+ +|+++.|+++|.+.+.+.+
T Consensus       118 ~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~  166 (272)
T PRK12550        118 QVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY  166 (272)
T ss_pred             CCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence            445567999999 89999999988888898 7999999999888776343

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.007  Score=47.76  Aligned_cols=43  Identities=26%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ...+++|+||+|++|..+++.+...|++|++++++.++.+.+.
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~   51 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELV   51 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4568999999999999999888888999999998877655443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.65  E-value=0.011  Score=47.49  Aligned_cols=89  Identities=18%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-eeeecCCcccHHHHHHhhccCCc----ccccH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD-DAFNYKEEPDLDVALKRMFLCWV----DFVGI  159 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~i~~~~~~g~----d~~g~  159 (192)
                      .+|.|+| .|-+|.-++.+|.-+|++|...++|.+|+..+...++-+ ++.-.+.. ++.+.+++.  +.+    -.-|.
T Consensus       169 ~kv~iiG-GGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~-~iee~v~~a--DlvIgaVLIpga  244 (371)
T COG0686         169 AKVVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPS-NIEEAVKKA--DLVIGAVLIPGA  244 (371)
T ss_pred             ccEEEEC-CccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHH-HHHHHhhhc--cEEEEEEEecCC
Confidence            4578888 799999999999999999999999999999998566665 33333333 676666653  111    22232


Q ss_pred             H----HHHHHHHhhcCCCe-EEE
Q 029543          160 E----YCRSLLLVLLFRPL-KIM  177 (192)
Q Consensus       160 ~----~~~~~~~~l~~~G~-v~~  177 (192)
                      .    .+++.++.|+||+. |=+
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEE
Confidence            1    67788999999994 434

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.0054  Score=47.87  Aligned_cols=36  Identities=31%  Similarity=0.519  Sum_probs=32.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            378999999999999999988888899999999876

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.0045  Score=48.57  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~   42 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA   42 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc
Confidence            3578999999999999999887788999999999876543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.62  E-value=0.012  Score=47.09  Aligned_cols=45  Identities=16%  Similarity=0.117  Sum_probs=39.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+.+|+|.| +|++|..++..+...|+ +|++++|+.+|.+.+.+++
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l  171 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL  171 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence            568999999 89999999999989999 8999999999888776444

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.62  E-value=0.0063  Score=47.62  Aligned_cols=38  Identities=8%  Similarity=0.029  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .|++++|+||+  ++||..+++.....|++|++++++++.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~   48 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA   48 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence            47899999987  499999998887889999999988543

>PRK06398 aldose dehydrogenase; Validated

Probab=96.62  E-value=0.0041  Score=48.66  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++++|+||+|++|..+++.....|++|+.++|+++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4789999999999999999888889999999988754

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.0079  Score=47.90  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..+++++|+||+++||..+++.....|++|++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence            3588999999999999999987777899999988764

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.0071  Score=47.52  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=34.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++|+||+|++|..+++.....|++|+++++++++.+.+.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~   41 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETL   41 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6999999999999998877778999999999988766543

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.57  E-value=0.0069  Score=47.89  Aligned_cols=37  Identities=5%  Similarity=0.085  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .++++||+||++  +||..+++.....|++|+.++|+++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~   44 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA   44 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence            578999999886  9999999888889999999988753

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.57  E-value=0.018  Score=45.83  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      ..+.+++|+| +|++|..++..++..|+ +|+++.|+.++.+.+.++++
T Consensus       121 ~~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~  168 (278)
T PRK00258        121 LKGKRILILG-AGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG  168 (278)
T ss_pred             CCCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            3578899999 79999999999999995 99999999998877764443

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.56  E-value=0.0081  Score=46.18  Aligned_cols=42  Identities=26%  Similarity=0.386  Sum_probs=35.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..++......|++|+.+ ++++++.+.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~   47 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELL   47 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            5789999999999999998777789999988 88877765554

>PRK07069 short chain dehydrogenase; Validated

Probab=96.56  E-value=0.012  Score=45.35  Aligned_cols=39  Identities=15%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      ++|+||+|++|..+++.....|++|++++++ .++++.+.
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   41 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFA   41 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHH
Confidence            8999999999999998888889999999987 66555554

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.55  E-value=0.0087  Score=46.78  Aligned_cols=41  Identities=15%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~  123 (192)
                      .+++++|+||+++||..+++.....|++|+.+.+ ++++.+.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~   48 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANK   48 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            5789999999999999999888888999888764 4454443

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.55  E-value=0.0062  Score=49.34  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV---DLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~---~~~~~~~g  129 (192)
                      .+..|+|+||+|-||..++.....+|++|.+++|++++.   +.++ ++.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~-~l~   53 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLR-KLE   53 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHH-hcc
Confidence            578999999999999999999999999999999998763   3466 553

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.55  E-value=0.0082  Score=46.38  Aligned_cols=42  Identities=17%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVG-SAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~-~~~~~~~~~~~  124 (192)
                      .+.+++|+||+|++|+.+++.....|++|++ ..|+.++.+.+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~   45 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEET   45 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            4689999999999999999888888998766 46776665444

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=96.54  E-value=0.016  Score=44.57  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      |++++++|++||||+.........|+++.+++.+.|+.+... +|.+
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~a-kL~a   50 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIA-KLQA   50 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHH-HHhc
Confidence            899999999999999888777788998888888888777666 5543

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.53  E-value=0.0079  Score=46.87  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=35.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+.+|+|+||+|.+|..+++.+...|++|+++.|++++.+..
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~   57 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS   57 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence            367899999999999999988777899999999988775544

>TIGR02415 23BDH acetoin reductases

Probab=96.51  E-value=0.0095  Score=46.13  Aligned_cols=41  Identities=12%  Similarity=0.125  Sum_probs=34.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++++|+|++|++|..+++.....|++|+.+.+++++.+.+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   41 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETA   41 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            47999999999999999888888999999999877655443

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.50  E-value=0.017  Score=45.10  Aligned_cols=47  Identities=15%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcC
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGSK--EKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~~--~~~~~~~~~~g  129 (192)
                      .+++++|+||  +++||..+++.....|++|++++++.  +..+.+.++++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~   56 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP   56 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC
Confidence            4789999998  79999999987777899999998763  44455543444

>PRK05599 hypothetical protein; Provisional

Probab=96.50  E-value=0.0086  Score=46.51  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=33.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++|+||++++|..+++... .|++|+.++|++++++.+.
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~   40 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLA   40 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHH
Confidence            68999999999998887655 4999999999998887664

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.50  E-value=0.01  Score=43.81  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|..|+++|+.-+||...++-....|++||++.|+++.+..+-
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV   48 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLV   48 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHH
Confidence            5888999999999999999888888999999999999988876

>PLN02583 cinnamoyl-CoA reductase

Probab=96.48  E-value=0.0087  Score=47.93  Aligned_cols=36  Identities=25%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++++|+|+||+|.+|..+++.+...|++|++++|+.
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~   40 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKN   40 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCc
Confidence            567899999999999999998888999999999853

>PLN02686 cinnamoyl-CoA reductase

Probab=96.47  E-value=0.0099  Score=49.19  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=37.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+++|||+||+|.+|..+++.+...|++|++++++.++.+.++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45789999999999999999988888999999888876655554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.47  E-value=0.018  Score=46.04  Aligned_cols=46  Identities=22%  Similarity=0.364  Sum_probs=40.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|++++|.| +||.+..++.-++..|+ +|+++.|+.+|.+.+.+.++
T Consensus       125 ~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~  171 (283)
T COG0169         125 TGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFG  171 (283)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            589999999 89999999999999997 89999999999888874454

>PRK09135 pteridine reductase; Provisional

Probab=96.47  E-value=0.011  Score=45.55  Aligned_cols=41  Identities=12%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~  123 (192)
                      .+++++|+||+|++|..+++.....|++|++++|+ +++.+.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   46 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADA   46 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            46789999999999999998777789999999986 343433

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.46  E-value=0.01  Score=45.60  Aligned_cols=82  Identities=18%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHhcCCCee-eecCCcccHHHHHHhhccC--Cc-cccc--
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE--KVDLLKNKFGFDDA-FNYKEEPDLDVALKRMFLC--WV-DFVG--  158 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~--~~~~~~~~~g~~~v-i~~~~~~~~~~~i~~~~~~--g~-d~~g--  158 (192)
                      |+|+||+|.+|...++.+...+.+|.+.+|++.  ..+.++ ..|+..+ .|+.+.    +.+.+...+  .+ -+++  
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~-~~g~~vv~~d~~~~----~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQ-ALGAEVVEADYDDP----ESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHH-HTTTEEEES-TT-H----HHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhh-cccceEeecccCCH----HHHHHHHcCCceEEeecCcc
Confidence            789999999999999988888889999999864  355666 7888543 233332    223322222  12 2222  


Q ss_pred             ----HHHHHHHHHhhcCCC
Q 029543          159 ----IEYCRSLLLVLLFRP  173 (192)
Q Consensus       159 ----~~~~~~~~~~l~~~G  173 (192)
                          .+.....+++.+..|
T Consensus        76 ~~~~~~~~~~li~Aa~~ag   94 (233)
T PF05368_consen   76 HPSELEQQKNLIDAAKAAG   94 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhHHHhhhccc
Confidence                235556777777777

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.46  E-value=0.0074  Score=48.71  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      .|++|+|+||+|.+|..+++.....|.+|+++.|+.++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   43 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRK   43 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchH
Confidence            5789999999999999999887778999999888765443

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.016  Score=46.52  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=44.7

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .++..+++|+|++.++|++++.-++..|++|..+.|+.+|++.++++++.
T Consensus        30 ~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l   79 (331)
T KOG1210|consen   30 PKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELEL   79 (331)
T ss_pred             cCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhh
Confidence            34557999999999999999999999999999999999999999866654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.43  E-value=0.011  Score=47.21  Aligned_cols=46  Identities=13%  Similarity=0.003  Sum_probs=39.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|.| +|+.+.+++..+...|+ +|+++.|+++|.+.+.++++
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~  170 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV  170 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh
Confidence            578999999 89999999988888998 89999999998888764544

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.43  E-value=0.011  Score=48.50  Aligned_cols=44  Identities=18%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+.+|||+||+|.||..+++.....|++|++++++.++.+.+.
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~   51 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLL   51 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            45779999999999999999988888999999998876655443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.43  E-value=0.015  Score=44.45  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCe--eeecCCcccHHHHHHhh
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNK---FGFDD--AFNYKEEPDLDVALKRM  149 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g~~~--vi~~~~~~~~~~~i~~~  149 (192)
                      ....++++++||-.|  .|.|..+..+++..+  .+|++++.+++-.+.+++.   .|.+.  ++..    |..+.... 
T Consensus        70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g----d~~~~~~~-  142 (212)
T PRK13942         70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG----DGTLGYEE-  142 (212)
T ss_pred             HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC----CcccCCCc-
Confidence            556788999999998  345777788888765  5999999999888877743   34432  2221    11100000 


Q ss_pred             ccCCcc-----cccHHHHHHHHHhhcCCCeEEE
Q 029543          150 FLCWVD-----FVGIEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       150 ~~~g~d-----~~g~~~~~~~~~~l~~~G~v~~  177 (192)
                       .+.+|     +.-....+..++.|+++|++++
T Consensus       143 -~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi  174 (212)
T PRK13942        143 -NAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVI  174 (212)
T ss_pred             -CCCcCEEEECCCcccchHHHHHhhCCCcEEEE
Confidence             01233     2223455677889999996433

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.012  Score=45.63  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~  123 (192)
                      .+++++|+||+|++|..+++.....|++|++.. +++++.+.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~   44 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEE   44 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Confidence            478999999999999999988888899988865 45555443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.40  E-value=0.046  Score=40.27  Aligned_cols=66  Identities=14%  Similarity=0.026  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHhcCCCeeeecC
Q 029543           68 SVTAFAGLYEICSPKKGEYVYVSAASGA-VGQLVGQFAKLAGCHVVGSAGSKEKVDL-LKNKFGFDDAFNYK  137 (192)
Q Consensus        68 ~~ta~~~l~~~~~~~~g~~VlV~Ga~G~-iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~-~~~~~g~~~vi~~~  137 (192)
                      ...+...+.+...--.|.+|+|.| +|. +|..++..++..|++|+++.|+.+++.. ++   .+|.+|...
T Consensus        28 ~~a~v~l~~~~~~~l~gk~vlViG-~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~---~aDiVIsat   95 (168)
T cd01080          28 PAGILELLKRYGIDLAGKKVVVVG-RSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK---QADIVIVAV   95 (168)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh---hCCEEEEcC
Confidence            333334343332234789999999 576 5998999999899999999988654443 33   367776643

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.40  E-value=0.0074  Score=48.73  Aligned_cols=41  Identities=10%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .|+++||+||  ++|||..+++.....|++|++ .++.++++.+
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~   50 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIF   50 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHH
Confidence            5899999998  799999999999899999988 5565555444

>PLN02476 O-methyltransferase

Probab=96.40  E-value=0.055  Score=43.11  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhc-
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMF-  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~-  150 (192)
                      ...+....++||=+|  .++|..++.+|+.++  .+|+.++.++++.+.+++   +.|..+-|+.... +..+.+.++. 
T Consensus       112 ~L~~~~~ak~VLEIG--T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~~  188 (278)
T PLN02476        112 MLVQILGAERCIEVG--VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG-LAAESLKSMIQ  188 (278)
T ss_pred             HHHHhcCCCeEEEec--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHh
Confidence            344566788999998  467888888888763  489999999998888864   3476543443333 4445444431 


Q ss_pred             ---cCCc-----cccc---HHHHHHHHHhhcCCCeEEE
Q 029543          151 ---LCWV-----DFVG---IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ---~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~  177 (192)
                         .+.+     |+--   .+.++.+++.|++||++++
T Consensus       189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence               1223     4432   2478899999999997655

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.39  E-value=0.028  Score=43.42  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|++|..+++.....|++|+.+.+ ++++.+.+.++++
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~   51 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG   51 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence            3678999999999999999888888999887654 5555555553454

>PRK12743 oxidoreductase; Provisional

Probab=96.37  E-value=0.013  Score=45.72  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDL  123 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~  123 (192)
                      +++++|+||+|++|..+++.+...|++|+.+.+ +.++.+.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~   42 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKE   42 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHH
Confidence            578999999999999999988889999988764 4444433

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.37  E-value=0.011  Score=52.89  Aligned_cols=43  Identities=19%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++++.++.+.+.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~  455 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVA  455 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988766554

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.36  E-value=0.015  Score=44.81  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                      .+++++|+|++|++|..+++.....|++|++..
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~   34 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGC   34 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence            367899999999999999988888899887754

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.011  Score=52.34  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++++.+.
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~  412 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELV  412 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            678999999999999999877778999999999988876654

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=96.35  E-value=0.051  Score=44.08  Aligned_cols=58  Identities=24%  Similarity=0.269  Sum_probs=49.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~  135 (192)
                      +...+.||.++||-.-+|..|..++.+|+.+|+++|++..   +.+|...++ .+|+..+..
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~-a~Gaeii~t  156 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLR-ALGAEIILT  156 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHH-HcCCEEEec
Confidence            4567899999999999999999999999999999888764   357888888 999976654

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.34  E-value=0.015  Score=45.39  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|+||+|++|..+++.....|++|+.+.++.
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~   41 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD   41 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578999999999999999998888999988887753

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.0076  Score=46.10  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            36789999999999999998888889999999987543

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.31  E-value=0.024  Score=45.38  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=38.7

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ..+++++|.| +||.+++++..+...|+ +++++.|+.+|.+.+.+++
T Consensus       125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~  171 (283)
T PRK14027        125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_pred             cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence            3478999999 89999999887777898 8999999999888876444

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.29  E-value=0.0078  Score=47.09  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++++|+||+|++|..+++.....|++|+.+++++++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD   45 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            47899999999999999999888889999998877543

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.015  Score=45.11  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=33.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~  124 (192)
                      .+.+++|+||+|++|..+++.....|++|++. .|+.++.+.+
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~   47 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADET   47 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            36799999999999999998887789988764 6776665444

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.29  E-value=0.012  Score=45.06  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=31.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+.+++|+|++|++|..+++.+...|++|+++.+++.
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4578999999999999999988888999877777654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.28  E-value=0.012  Score=47.15  Aligned_cols=92  Identities=18%  Similarity=0.077  Sum_probs=55.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCCeeeecCCcccHHHHHHhhccCCcc-
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF---GFDDAFNYKEEPDLDVALKRMFLCWVD-  155 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~~~vi~~~~~~~~~~~i~~~~~~g~d-  155 (192)
                      ..++++||-.| +|+ |.+++.+++ .|+ +|++++.++..++.+++..   +....+..... +..    ....+.+| 
T Consensus       157 ~~~g~~VLDvG-cGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~~~----~~~~~~fDl  228 (288)
T TIGR00406       157 DLKDKNVIDVG-CGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-YLE----QPIEGKADV  228 (288)
T ss_pred             cCCCCEEEEeC-CCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-ccc----cccCCCceE
Confidence            45789999999 777 888877766 576 9999999999888877322   22211111111 111    11111233 


Q ss_pred             ----cccH---HHHHHHHHhhcCCCeEEE-eeC
Q 029543          156 ----FVGI---EYCRSLLLVLLFRPLKIM-END  180 (192)
Q Consensus       156 ----~~g~---~~~~~~~~~l~~~G~v~~-G~~  180 (192)
                          ....   ..+..+.+.|+|+|++++ |..
T Consensus       229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       229 IVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             EEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence                2222   366778899999996544 543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=96.27  E-value=0.013  Score=45.62  Aligned_cols=43  Identities=33%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             EEEEeCCCchHHHHHHH-HHHH---cCCEEEEEeCCHHHHHHHHHhc
Q 029543           86 YVYVSAASGAVGQLVGQ-FAKL---AGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q-~a~~---~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .++|+||+++||..+++ +++.   .|++|+.+.|++++++.+.+++
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l   48 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEI   48 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHH
Confidence            58999999999997775 5542   6999999999988877765343

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.078  Score=41.44  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      ...++.+|++|+=.| + |.|.+++-+|++.|-  +|+.....+++.+.+++.   +|....+..... |+.+.+.+..-
T Consensus        88 ~~~gi~pg~rVlEAG-t-GSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~-Dv~~~~~~~~v  164 (256)
T COG2519          88 ARLGISPGSRVLEAG-T-GSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG-DVREGIDEEDV  164 (256)
T ss_pred             HHcCCCCCCEEEEcc-c-CchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEec-ccccccccccc
Confidence            457899999999887 3 458899999998765  899999999999988754   344432322222 44333322211


Q ss_pred             CCc--cccc-HHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWV--DFVG-IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~--d~~g-~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +.+  |.-- .+.++.+.+.|+|+|.+.+-
T Consensus       165 Dav~LDmp~PW~~le~~~~~Lkpgg~~~~y  194 (256)
T COG2519         165 DAVFLDLPDPWNVLEHVSDALKPGGVVVVY  194 (256)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEE
Confidence            111  5544 56889999999999965443

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.26  E-value=0.016  Score=44.42  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDL  123 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~  123 (192)
                      ++++|+||+|++|..+++.....|++|+++.+ ++++.+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   40 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEA   40 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            47899999999999999888888999998887 5554443

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK04457 spermidine synthase; Provisional

Probab=96.26  E-value=0.1  Score=41.23  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=59.3

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCC---eeeecCCcccHHHHHHhhccC-Cc--
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFD---DAFNYKEEPDLDVALKRMFLC-WV--  154 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~~i~~~~~~-g~--  154 (192)
                      ...++||++| +| .|.++..+++... .+|++++.+++-.+.+++.++..   .-+..... |..+.+.+.... .+  
T Consensus        65 ~~~~~vL~IG-~G-~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIG-LG-GGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-DGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEEC-CC-HhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-CHHHHHHhCCCCCCEEE
Confidence            3567899999 44 3778888888764 59999999999999988545431   11111222 444444432211 11  


Q ss_pred             -ccc---c-------HHHHHHHHHhhcCCCeEEE
Q 029543          155 -DFV---G-------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       155 -d~~---g-------~~~~~~~~~~l~~~G~v~~  177 (192)
                       |.-   +       .+.++.+.+.|+|+|++++
T Consensus       142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence             321   1       3578889999999996554

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.26  E-value=0.025  Score=44.31  Aligned_cols=64  Identities=13%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhcCCCe--eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGS---KEKVDLLKNKFGFDD--AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~---~~~~~~~~~~~g~~~--vi~~~~~~~~~~~i  146 (192)
                      .+++++|+||  +++||..+++.....|++|+.+.+.   +++++.+.++++...  ..|..+++++.+.+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~   75 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALF   75 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHH
Confidence            5789999996  5799999888777789999887643   344444443445322  24544432343333

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.25  E-value=0.011  Score=47.84  Aligned_cols=40  Identities=18%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      .+++|||+||+|.||..+++.+...|++|++++++.++.+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~   43 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRK   43 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchh
Confidence            4789999999999999999888888999998887765443

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.24  E-value=0.027  Score=45.19  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH---HHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK---EKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~---~~~~~~~~~~  128 (192)
                      .+++++|+| +||+|..++..+...|+ +|+++.|++   ++.+.+.+++
T Consensus       125 ~~k~vlI~G-AGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l  173 (289)
T PRK12548        125 KGKKLTVIG-AGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKI  173 (289)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHH
Confidence            578999999 59999998888888899 599999986   5555544344

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.033  Score=41.63  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +++|+||+|++|..++...... ++|+.++|++
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~   33 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSS   33 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCC
Confidence            6899999999999888766555 8899888754

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.0098  Score=46.96  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence            4689999999999999999888888999999998754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.20  E-value=0.045  Score=41.55  Aligned_cols=96  Identities=15%  Similarity=0.086  Sum_probs=57.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      +...+.++++||=.| + |.|..+..+++..+  .+|++++.+++-.+.+++.   .+....+..... +..+.....  
T Consensus        66 ~~l~~~~~~~VLDiG-~-GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~-d~~~~~~~~--  140 (205)
T PRK13944         66 ELIEPRPGMKILEVG-T-GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG-DGKRGLEKH--  140 (205)
T ss_pred             HhcCCCCCCEEEEEC-c-CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC-CcccCCccC--
Confidence            556778899999998 4 45778888888764  5999999999877776632   343211111111 211111110  


Q ss_pred             CCcc-----cccHHHHHHHHHhhcCCCeEEE
Q 029543          152 CWVD-----FVGIEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~g~d-----~~g~~~~~~~~~~l~~~G~v~~  177 (192)
                      +.+|     .+.....+..++.|+++|++++
T Consensus       141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi  171 (205)
T PRK13944        141 APFDAIIVTAAASTIPSALVRQLKDGGVLVI  171 (205)
T ss_pred             CCccEEEEccCcchhhHHHHHhcCcCcEEEE
Confidence            1223     3333455677899999996543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.19  E-value=0.0096  Score=48.80  Aligned_cols=49  Identities=14%  Similarity=0.097  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           70 TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        70 ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      |||.-+.....+ .+++|+|+||+|-+|..++......|.+|+++++...
T Consensus         2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~   50 (348)
T PRK15181          2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST   50 (348)
T ss_pred             chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            677766443333 4579999999999999999988888999999997543

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.19  E-value=0.011  Score=48.42  Aligned_cols=39  Identities=21%  Similarity=0.275  Sum_probs=34.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV  121 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~  121 (192)
                      .|.+|||+||+|.+|..+++.+...|.+|++++|++...
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~   41 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTS   41 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccc
Confidence            468999999999999999998888899999999876543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK05855 short chain dehydrogenase; Validated

Probab=96.16  E-value=0.017  Score=50.18  Aligned_cols=43  Identities=21%  Similarity=0.248  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+.+++|+||+|++|..+++.....|++|+.++|++++.+.+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~  356 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTA  356 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4678999999999999988888788999999999988776654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.15  E-value=0.04  Score=46.50  Aligned_cols=47  Identities=15%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      -.+.+|+|.| +|++|.+++..+...|+ +++++.|+.+|.+.+.++++
T Consensus       179 l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        179 ISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            3678999999 89999999998888998 89999999998887775675

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.15  E-value=0.015  Score=46.61  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=34.1

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      |||+||+|.||.-+++-....+. +++.+++++.++-.+++++
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l   43 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELEREL   43 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHC
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHH
Confidence            79999999999988866666666 8999999999888887666

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.14  E-value=0.017  Score=45.31  Aligned_cols=36  Identities=6%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|+||  +++||..+++.....|++|+.+.+++
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~   42 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD   42 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH
Confidence            5789999996  67999999988878899999887654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.14  E-value=0.033  Score=46.36  Aligned_cols=42  Identities=26%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+|||+| +|+||+.+++.+.+.+ .+|++++|+.++.+.+. ..
T Consensus         2 ~~ilviG-aG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~-~~   44 (389)
T COG1748           2 MKILVIG-AGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA-EL   44 (389)
T ss_pred             CcEEEEC-CchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hh
Confidence            5799999 6999999999988888 59999999999988887 44

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.13  E-value=0.019  Score=47.05  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=38.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAK-LAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~-~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+.+|+|+||+|.+|..+++... ..|. +++.+.|++++++.+.++++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~  202 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG  202 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc
Confidence            57899999999999998887775 4576 89999999888888764554

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.0099  Score=45.86  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +++|+||+|++|..+++.....|++|++++|+.++
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~   37 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP   37 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch
Confidence            69999999999999998877789999999988654

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.09  E-value=0.046  Score=43.33  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=37.7

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ..+++++|+| +|++|..++......|++|++++|++++.+.+.+++
T Consensus       115 ~~~k~vliiG-aGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~  160 (270)
T TIGR00507       115 RPNQRVLIIG-AGGAARAVALPLLKADCNVIIANRTVSKAEELAERF  160 (270)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999 699999998877778999999999988876665343

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.08  E-value=0.014  Score=45.69  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=35.3

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhc
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGS---KEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~---~~~~~~~~~~~  128 (192)
                      .|++++|+||+  ++||..+++.....|++|+.++|+   +++++.+.+++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~   56 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL   56 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc
Confidence            47899999987  799999988777789999998765   34455554344

>PRK07985 oxidoreductase; Provisional

Probab=96.07  E-value=0.019  Score=45.98  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+++++|+||+|+||..+++.....|++|+++.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            57899999999999999998888889999988754

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.07  E-value=0.053  Score=40.45  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=35.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      +|.|+||+|-+|..+++=|+.+|-.|++++|++.|+...
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~   40 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR   40 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc
Confidence            588999999999999999999999999999999987654

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.045  Score=41.43  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=34.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+++|+||+|.+|..++..+... .+|++++|++++.+.+.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~   43 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA   43 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence            368999999999999888766666 89999999988776665

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.05  E-value=0.12  Score=41.63  Aligned_cols=61  Identities=23%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCCeeeecCCc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA---GSKEKVDLLKNKFGFDDAFNYKEE  139 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~---~~~~~~~~~~~~~g~~~vi~~~~~  139 (192)
                      +...+++|++ +|-+-+|..|..++.+|+++|++++.+.   .|++|.+.++ .+|+..++....+
T Consensus        55 ~~G~l~pG~t-IVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~-a~GAevi~t~~~~  118 (300)
T COG0031          55 KRGLLKPGGT-IVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLR-ALGAEVILTPGAP  118 (300)
T ss_pred             HcCCCCCCCE-EEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEcCCCC
Confidence            4567999995 4555599999999999999999877765   4678999999 9999877665533

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.02  E-value=0.044  Score=41.34  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=38.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+.++|+|++++||.+..|.....|++|++.+++....+.....++.
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g   60 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG   60 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC
Confidence            46689999999999999999999999999999876655444336665

>PLN02650 dihydroflavonol-4-reductase

Probab=96.02  E-value=0.017  Score=47.20  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=35.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      ..++|||+||+|.||..++..+...|.+|++++++.++.+.+
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~   45 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKV   45 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHH
Confidence            356899999999999999988888899999999886655443

>PLN00015 protochlorophyllide reductase

Probab=96.02  E-value=0.031  Score=44.95  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             EEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcC
Q 029543           88 YVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        88 lV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +|+||+++||..+++.....| ++|+.++|++++.+.+.++++
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~   43 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAG   43 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhc
Confidence            589999999999888777789 899999999887776654543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.02  E-value=0.015  Score=46.82  Aligned_cols=38  Identities=21%  Similarity=0.306  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+.+|||+||+|.+|..++..+...|.+|++++++.++
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence            36789999999999999998888889999999887654

>PRK06128 oxidoreductase; Provisional

Probab=96.01  E-value=0.017  Score=46.21  Aligned_cols=36  Identities=11%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .++++||+||+|+||..+++.....|++|+++.++.
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~   89 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPE   89 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence            478999999999999999988888899998887653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.99  E-value=0.012  Score=47.26  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=36.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|+|+||+|.+|..+++.....|.+|++++|++++...+. ..+..
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~   46 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLE-GLDVE   46 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccc-cCCce
Confidence            6999999999999999988888999999999876654443 34443

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN03075 nicotianamine synthase; Provisional

Probab=95.98  E-value=0.12  Score=41.57  Aligned_cols=97  Identities=10%  Similarity=-0.015  Sum_probs=63.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCC----CeeeecCCcccHHHHHHhhccCCc--
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKFGF----DDAFNYKEEPDLDVALKRMFLCWV--  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~~i~~~~~~g~--  154 (192)
                      +.++|+-.| +|+.|+.++-+++..  +.+++.+|.+++..+.+++.+..    ..-+..... |..+.....  +.+  
T Consensus       123 ~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~-Da~~~~~~l--~~FDl  198 (296)
T PLN03075        123 VPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA-DVMDVTESL--KEYDV  198 (296)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC-chhhccccc--CCcCE
Confidence            679999999 999999888877654  44899999999999988843322    222222222 332211111  122  


Q ss_pred             ---cc------cc-HHHHHHHHHhhcCCCeEEEeeCCCC
Q 029543          155 ---DF------VG-IEYCRSLLLVLLFRPLKIMENDSGS  183 (192)
Q Consensus       155 ---d~------~g-~~~~~~~~~~l~~~G~v~~G~~~~~  183 (192)
                         ++      .. ...++...+.|+|||++++|...|.
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~  237 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA  237 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence               21      12 3488999999999999888875553

>PRK08309 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.16  Score=37.65  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC-e--e--eecCCcccHHHHHHhhcc--CCc----
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD-D--A--FNYKEEPDLDVALKRMFL--CWV----  154 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-~--v--i~~~~~~~~~~~i~~~~~--~g~----  154 (192)
                      +++|+||+|-+|. +++.....|++|++.+|++++.+.++..++.. .  .  .|..+++++.+.+.+...  +.+    
T Consensus         2 ~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv   80 (177)
T PRK08309          2 HALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAV   80 (177)
T ss_pred             EEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            5899998754444 55555557999999999988877665334321 1  1  366654345544443321  122    


Q ss_pred             c---cccHHHHHHHHHhhcCC----CeE-EEeeCCC
Q 029543          155 D---FVGIEYCRSLLLVLLFR----PLK-IMENDSG  182 (192)
Q Consensus       155 d---~~g~~~~~~~~~~l~~~----G~v-~~G~~~~  182 (192)
                      +   ..+...+..+.+...-.    .++ ++|....
T Consensus        81 ~~vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~~  116 (177)
T PRK08309         81 AWIHSSAKDALSVVCRELDGSSETYRLFHVLGSAAS  116 (177)
T ss_pred             EeccccchhhHHHHHHHHccCCCCceEEEEeCCcCC
Confidence            2   22344555555544433    245 5676654

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.022  Score=43.81  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+.+++|+|++|++|..+++.....|++++.+.++.
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~   39 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS   39 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC
Confidence            478999999999999999998888899888777653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=95.95  E-value=0.089  Score=39.46  Aligned_cols=88  Identities=16%  Similarity=0.057  Sum_probs=54.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccCCc--
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLCWV--  154 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~g~--  154 (192)
                      ++++.+|+-.| +| .|..+..+++.. +++|++++.+++..+.+++   +.+.+. +..... +..+ +..  .+.+  
T Consensus        43 l~~g~~VLDiG-cG-tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~-d~~~-~~~--~~~fDl  115 (187)
T PRK00107         43 LPGGERVLDVG-SG-AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHG-RAEE-FGQ--EEKFDV  115 (187)
T ss_pred             cCCCCeEEEEc-CC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEec-cHhh-CCC--CCCccE
Confidence            45689999998 33 456666666654 5699999999988777763   345543 222222 3322 111  1123  


Q ss_pred             ---cccc--HHHHHHHHHhhcCCCeE
Q 029543          155 ---DFVG--IEYCRSLLLVLLFRPLK  175 (192)
Q Consensus       155 ---d~~g--~~~~~~~~~~l~~~G~v  175 (192)
                         ++.+  ...++.+.+.|+|+|++
T Consensus       116 V~~~~~~~~~~~l~~~~~~LkpGG~l  141 (187)
T PRK00107        116 VTSRAVASLSDLVELCLPLLKPGGRF  141 (187)
T ss_pred             EEEccccCHHHHHHHHHHhcCCCeEE
Confidence               3333  24778889999999954

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.94  E-value=0.022  Score=43.63  Aligned_cols=37  Identities=27%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +..+|+|+||+|++|..+++.+...|++|+++.++.+
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~   41 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE   41 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence            3568999999999999999988889998877666543

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.94  E-value=0.025  Score=43.97  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+|++|+||..+++.....|++|+.+++++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~   44 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE   44 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999999999999998888899999887654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.93  E-value=0.063  Score=38.44  Aligned_cols=48  Identities=25%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      ..+.+++|+| +|.+|...++..+..| .+|++.++++++.+.+.++++.
T Consensus        17 ~~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~   65 (155)
T cd01065          17 LKGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE   65 (155)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            4578999999 6999999998888786 5899999998887765535554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.93  E-value=0.19  Score=37.63  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc-
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL-  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~-  151 (192)
                      ....+.++++|+=.|  .|.|..+..+++.. +.+|++++.+++..+.+++   +++.+.+ ..... +..+.+..... 
T Consensus        34 ~~l~~~~~~~VLDiG--~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v-~~~~~-d~~~~~~~~~~~  109 (196)
T PRK07402         34 SQLRLEPDSVLWDIG--AGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNV-EVIEG-SAPECLAQLAPA  109 (196)
T ss_pred             HhcCCCCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCe-EEEEC-chHHHHhhCCCC
Confidence            455777889888777  34455666677654 4699999999998888763   3455432 11111 33222222211 


Q ss_pred             -CCc--cccc--HHHHHHHHHhhcCCCeEEEe
Q 029543          152 -CWV--DFVG--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 -~g~--d~~g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                       +.+  +...  ...++.+.+.|+|+|++++.
T Consensus       110 ~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~  141 (196)
T PRK07402        110 PDRVCIEGGRPIKEILQAVWQYLKPGGRLVAT  141 (196)
T ss_pred             CCEEEEECCcCHHHHHHHHHHhcCCCeEEEEE
Confidence             111  3222  35788888999999965443

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.90  E-value=0.029  Score=45.13  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+++||..+++.....|++|++.+++
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            47899999999999999988777789999998875

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.028  Score=44.44  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+|| |+||..+++... .|++|+.++|++++++.+.
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~   41 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAA   41 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHH
Confidence            467899995 899999887774 7999999999987766554

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.034  Score=43.25  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=33.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~  124 (192)
                      .+.+++|+||+|++|..+++.+...|++|++++++ .++.+.+
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~   50 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEAL   50 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            46789999999999999998888889988877654 4444433

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.88  E-value=0.027  Score=44.28  Aligned_cols=36  Identities=11%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||++  +||..+++.....|++|+.+++++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~   42 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   42 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch
Confidence            578999999875  899988887777899999888773

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.86  E-value=0.019  Score=48.02  Aligned_cols=41  Identities=29%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +...+.+|+|+||+|.+|..+++.+...|.+|++++|+.++
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~   96 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG   96 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence            44567899999999999999998888889999999998754

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.027  Score=44.98  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=32.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..+.+++|+||+|++|..+++.....|++|+.+++++
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3578999999999999999987777899999998874

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.85  E-value=0.019  Score=44.50  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=30.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++++|+||+|++|..+++.....|++|++++++.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            5799999999999999988888899999998764

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.83  E-value=0.018  Score=44.13  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|+|++|++|..+++.....|++|+++++++
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~   39 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQD   39 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999999999988778899999988764

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=95.82  E-value=0.037  Score=42.67  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~  124 (192)
                      .+++++|+||+|++|..+++.....|++|+++.+ ++++.+.+
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~   47 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENL   47 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHH
Confidence            4789999999999999999877788998877654 44444433

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.81  E-value=0.022  Score=43.98  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|+||+|++|..+++.....|++|++++++.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence            478999999999999999988888899999999876

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=95.81  E-value=0.015  Score=47.26  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++.+|||+||+|.+|..+++.+...|++|++++++++
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~   41 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSS   41 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccc
Confidence            4688999999999999999988888999999987643

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.79  E-value=0.029  Score=43.08  Aligned_cols=40  Identities=13%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLL  124 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~  124 (192)
                      ++++|+||+|++|..+++.....|++|+++ .+++++.+.+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~   42 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEV   42 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHH
Confidence            479999999999999998888889988764 5666655433

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=95.79  E-value=0.016  Score=47.30  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++|||+||+|.||..+++.+...|.+|++++|+++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCc
Confidence            47999999999999999988888999999998753

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.79  E-value=0.048  Score=42.66  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=29.2

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+  ++||..+++.....|++|+.+.++
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            47899999975  799999998877889999887543

>PRK08317 hypothetical protein; Provisional

Probab=95.79  E-value=0.12  Score=39.48  Aligned_cols=47  Identities=28%  Similarity=0.382  Sum_probs=39.8

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~  125 (192)
                      +...+.++++||-.| +|. |..+..+++..+  .++++++.+++.++.++
T Consensus        13 ~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~   61 (241)
T PRK08317         13 ELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAK   61 (241)
T ss_pred             HHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence            556788899999999 665 888999998763  58999999999888887

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.78  E-value=0.06  Score=41.10  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      +...++++++||-.|  .|.|..++.+++..+.  +|++++.+++-.+.+++   ++|.+.+- .... +..+.....  
T Consensus        71 ~~l~~~~~~~VLDiG--~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~-~~~~-d~~~~~~~~--  144 (215)
T TIGR00080        71 ELLELKPGMKVLEIG--TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVI-VIVG-DGTQGWEPL--  144 (215)
T ss_pred             HHhCCCCcCEEEEEC--CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeE-EEEC-CcccCCccc--
Confidence            556788999999998  3457777888887653  79999999988887763   34544321 1111 221111110  


Q ss_pred             CCc-----ccccHHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWV-----DFVGIEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~-----d~~g~~~~~~~~~~l~~~G~v~~G  178 (192)
                      ..+     +..-.......++.|+++|++++.
T Consensus       145 ~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       145 APYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            123     332334556778999999965443

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.033  Score=42.81  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      .+.+++|+||+|++|..+++.....|++|+.+++
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            3678999999999999999888888999888654

>PLN02214 cinnamoyl-CoA reductase

Probab=95.77  E-value=0.026  Score=46.23  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+.+|+|+||+|.+|..+++.+...|.+|++++|+.++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD   46 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            57789999999999999998888889999999987654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.77  E-value=0.029  Score=42.69  Aligned_cols=96  Identities=18%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccC--
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLC--  152 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~--  152 (192)
                      +...-++||-+|  ..+|..++.+|+.+  +.+|+.++.++++.+.+++   +.|.+.-|+.... +..+.+.++...  
T Consensus        42 ~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~~~l~~l~~~~~  118 (205)
T PF01596_consen   42 RLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DALEVLPELANDGE  118 (205)
T ss_dssp             HHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHHHHHHHHHTTT
T ss_pred             HhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccHhhHHHHHhccC
Confidence            334567899999  56788999999876  5699999999999888863   3465443433333 444555443221  


Q ss_pred             --Cc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          153 --WV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       153 --g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                        .+     |+--   ...++.+++.|++||.+++-
T Consensus       119 ~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  119 EGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             TTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence              23     4432   24788899999999977653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.75  E-value=0.08  Score=44.20  Aligned_cols=37  Identities=32%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      -.|.+|.|.| .|.+|+.+++.+...|++|++++.+..
T Consensus       205 l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         205 LEGARVAVQG-FGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             cCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3799999999 999999999999888999999988776

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.74  E-value=0.034  Score=47.59  Aligned_cols=52  Identities=21%  Similarity=0.315  Sum_probs=42.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH---------------------HHHHHHHHhcCCCeeeec
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK---------------------EKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~---------------------~~~~~~~~~~g~~~vi~~  136 (192)
                      .+++|+|+| +|+.|+.++..++..|.+|++.++.+                     ...+.++ ++|++..++.
T Consensus       140 ~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~-~~Gv~~~~~~  212 (467)
T TIGR01318       140 TGKRVAVIG-AGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFT-AMGIEFHLNC  212 (467)
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHH-HCCCEEECCC
Confidence            578999999 89999999999999999998888654                     2456677 8888655543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=95.74  E-value=0.035  Score=42.79  Aligned_cols=40  Identities=18%  Similarity=0.177  Sum_probs=31.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDLL  124 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~~  124 (192)
                      ++++|+||+|++|..+++.....|++|+++. +++++.+.+
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~   43 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEET   43 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            5799999999999999988888899887664 555554443

>PRK06123 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.041  Score=42.39  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDL  123 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~  123 (192)
                      +.+++|+|++|++|..+++.....|++|+... +++++.+.
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~   42 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEA   42 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHH
Confidence            46899999999999998887777899877765 44444433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.73  E-value=0.19  Score=39.33  Aligned_cols=43  Identities=23%  Similarity=0.246  Sum_probs=35.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  126 (192)
                      +.++++|+-.| +|. |.+++.+++ .|+ +|++++.++..++.+++
T Consensus       117 ~~~~~~VLDiG-cGs-G~l~i~~~~-~g~~~v~giDis~~~l~~A~~  160 (250)
T PRK00517        117 VLPGKTVLDVG-CGS-GILAIAAAK-LGAKKVLAVDIDPQAVEAARE  160 (250)
T ss_pred             cCCCCEEEEeC-CcH-HHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            56899999999 777 887776555 577 69999999998888873

>PRK14967 putative methyltransferase; Provisional

Probab=95.72  E-value=0.24  Score=38.03  Aligned_cols=46  Identities=22%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLK  125 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  125 (192)
                      ....+.++++||-.| +|. |.++..+++. ++ +|++++.+++.++.++
T Consensus        30 ~~~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~   76 (223)
T PRK14967         30 AAEGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSVTAVDISRRAVRSAR   76 (223)
T ss_pred             HhcccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence            334577899999999 776 8888888875 66 9999999998888766

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=95.72  E-value=0.033  Score=43.69  Aligned_cols=40  Identities=18%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLL  124 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~  124 (192)
                      .+++|+||+++||+.+++.....|++|+++.++ +++++.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~   42 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTL   42 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHH
Confidence            478999999999999998888899999987654 4555444

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.72  E-value=0.034  Score=45.12  Aligned_cols=43  Identities=7%  Similarity=0.020  Sum_probs=33.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~  125 (192)
                      .|.+|||+||+|.+|..+++.+...|  .+|++.+++..+.+.+.
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~   47 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQ   47 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHH
Confidence            47889999999999999987766665  58999998776554443

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.70  E-value=0.013  Score=46.36  Aligned_cols=36  Identities=8%  Similarity=0.196  Sum_probs=32.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV  121 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~  121 (192)
                      +|+|+||+|.+|..+++.+...|.+|.+.+|++++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~   36 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS   36 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            489999999999999988888899999999998753

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.69  E-value=0.14  Score=39.80  Aligned_cols=92  Identities=16%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCCcccHHHHHHhhccCCc-----
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD--AFNYKEEPDLDVALKRMFLCWV-----  154 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~i~~~~~~g~-----  154 (192)
                      -+|.+||=.|+.|  |+++.-+|+ .|++|+++|.+++.++.++ ......  -+||... ...+ +.... +.+     
T Consensus        58 l~g~~vLDvGCGg--G~Lse~mAr-~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~-~~ed-l~~~~-~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCGG--GILSEPLAR-LGASVTGIDASEKPIEVAK-LHALESGVNIDYRQA-TVED-LASAG-GQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCCc--cHhhHHHHH-CCCeeEEecCChHHHHHHH-Hhhhhccccccchhh-hHHH-HHhcC-CCccEEEE
Confidence            3788999999544  466666665 5899999999999999987 332221  2567654 3332 32221 122     


Q ss_pred             ----cccc--HHHHHHHHHhhcCCCeEEEeeC
Q 029543          155 ----DFVG--IEYCRSLLLVLLFRPLKIMEND  180 (192)
Q Consensus       155 ----d~~g--~~~~~~~~~~l~~~G~v~~G~~  180 (192)
                          +.+-  ...+..+.+++||+|.+++...
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence                3444  2377889999999997766543

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.68  E-value=0.049  Score=43.00  Aligned_cols=52  Identities=23%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHhcCCCeeeecC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK------EKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~------~~~~~~~~~~g~~~vi~~~  137 (192)
                      +|||+||+|.+|..+++.+...|.+|++++|+.      +.++.+.+....|.+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a   58 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTA   58 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECC
Confidence            489999999999999998888899999998752      2222222134457777643

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.63  E-value=0.079  Score=34.74  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=37.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcC---CEEEEE-eCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAG---CHVVGS-AGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~G---a~Vi~~-~~~~~~~~~~~~~~g~~  131 (192)
                      +|.++| +|.+|..+++-....|   .+|+.+ +|++++.+.++++++..
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~   49 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQ   49 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTE
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccc
Confidence            477888 9999999998888888   788855 99999999987577753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=95.60  E-value=0.088  Score=39.02  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------HHHHHHHHhcCCCee---eecCCcccHHHHHHh
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK-------EKVDLLKNKFGFDDA---FNYKEEPDLDVALKR  148 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~-------~~~~~~~~~~g~~~v---i~~~~~~~~~~~i~~  148 (192)
                      +++|+|+.|++|+.+++.....++ +++.+.|+.       +..+.++ +.|....   +|..+..++.+.+.+
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~-~~g~~v~~~~~Dv~d~~~v~~~~~~   74 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELE-SAGARVEYVQCDVTDPEAVAAALAQ   74 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHH-HTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHH-hCCCceeeeccCccCHHHHHHHHHH
Confidence            689999999999999988888877 999999982       2344445 5566422   344443244444433

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.60  E-value=0.051  Score=40.47  Aligned_cols=39  Identities=23%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +|.|.| +|.+|...++++...|.+|+..+++++.++..+
T Consensus         1 ~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIG-AGTMGRGIAALFARAGYEVTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred             CEEEEc-CCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence            589999 799999999888888999999999998766654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.03  Score=42.64  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=33.0

Q ss_pred             EEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           88 YVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        88 lV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~   38 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAA   38 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            58999999999999887788999999999987766654

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.57  E-value=0.25  Score=38.78  Aligned_cols=97  Identities=13%  Similarity=0.053  Sum_probs=65.5

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc--
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL--  151 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~--  151 (192)
                      .+...-++||-+|  ..+|..++.+|+..  +.+|+.++.++++.+.+++   +.|...-|+.... +..+.+.++..  
T Consensus        75 ~~~~~ak~iLEiG--T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l~~~~  151 (247)
T PLN02589         75 LKLINAKNTMEIG--VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDQMIEDG  151 (247)
T ss_pred             HHHhCCCEEEEEe--ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec-cHHHHHHHHHhcc
Confidence            3444567899998  47888888899876  4699999999988887763   3465444444433 55555554321  


Q ss_pred             ---CCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          152 ---CWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ---~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                         +.+     |+--   ...++.+++.+++||++++-
T Consensus       152 ~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        152 KYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence               223     4332   24788899999999976653

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.57  E-value=0.088  Score=42.24  Aligned_cols=46  Identities=13%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH---HHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK---EKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~---~~~~~~~~~~g  129 (192)
                      .+++++|.| +||.+++++..+...|+ +|+++.|++   +|.+.+.++++
T Consensus       123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~  172 (288)
T PRK12749        123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN  172 (288)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence            578999999 78889877766667798 899999984   46665553443

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=95.53  E-value=0.037  Score=42.45  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLL  124 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~  124 (192)
                      ++|+||+|++|..+++.....|++|++++++ +++.+.+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~   39 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESV   39 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            5899999999999998888889999888765 3444333

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.52  E-value=0.031  Score=45.43  Aligned_cols=38  Identities=16%  Similarity=0.155  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+.+|||+||+|.+|..+++.....|++|++++++.++
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~   45 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN   45 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            37899999999999999998888889999888877544

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.51  E-value=0.027  Score=43.98  Aligned_cols=40  Identities=25%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +|||+||+|.+|...++-+...|.+|.+.+|++++.....
T Consensus         2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~   41 (275)
T COG0702           2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA   41 (275)
T ss_pred             eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc
Confidence            6899999999999999988888999999999998877765

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.49  E-value=0.14  Score=39.87  Aligned_cols=97  Identities=21%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC---CCeeeecCCcccHHHHHHhhccC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG---FDDAFNYKEEPDLDVALKRMFLC  152 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g---~~~vi~~~~~~~~~~~i~~~~~~  152 (192)
                      ......+|++||=.+  +|.|-++..+++..|- +|+++|.|+.-++.++++..   ... +..-.. |.. .+-  .++
T Consensus        45 ~~~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~-dAe-~LP--f~D  117 (238)
T COG2226          45 SLLGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG-DAE-NLP--FPD  117 (238)
T ss_pred             HhhCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe-chh-hCC--CCC
Confidence            344556899998775  6789999999999876 99999999998888875432   221 111111 111 000  111


Q ss_pred             -Ccc----------ccc-HHHHHHHHHhhcCCCeE-EEeeC
Q 029543          153 -WVD----------FVG-IEYCRSLLLVLLFRPLK-IMEND  180 (192)
Q Consensus       153 -g~d----------~~g-~~~~~~~~~~l~~~G~v-~~G~~  180 (192)
                       .+|          ..- ...+.+..+.|+|+|++ ++-..
T Consensus       118 ~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         118 NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence             222          222 24889999999999964 44444

>PLN02427 UDP-apiose/xylose synthase

Probab=95.47  E-value=0.041  Score=45.72  Aligned_cols=43  Identities=16%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ...+|||+||+|-+|..+++.+... |.+|++++++.++.+.+.
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~   56 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL   56 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh
Confidence            3457999999999999999877777 579999998877665554

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=95.45  E-value=0.072  Score=40.61  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++|+|++|++|..+++.....|++|++++++.
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~   32 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSS   32 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999988888899999998875

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.44  E-value=0.052  Score=47.27  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+| +|++|..++..+...|++|+++.|+.++.+.+.++++
T Consensus       378 ~~k~vlIlG-aGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~  423 (529)
T PLN02520        378 AGKLFVVIG-AGGAGKALAYGAKEKGARVVIANRTYERAKELADAVG  423 (529)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC
Confidence            467899999 6999999999888899999999999888877764554

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.43  E-value=0.045  Score=41.97  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++++|+|++|++|..+++.....|++|+.+++++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4799999999999999988777899999999874

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.40  E-value=0.17  Score=40.50  Aligned_cols=54  Identities=15%  Similarity=0.033  Sum_probs=39.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      -.|++|+|.|++|-+|..+++++...|++|++..+..+.+....  -++|.+|+..
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~--~~aDIvI~At  210 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELV--KQADIIVGAV  210 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHh--ccCCEEEEcc
Confidence            46999999994444999999999999998888887544433322  2578888754

>PRK12744 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.037  Score=43.07  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      .+++++|+||+|++|..+++.....|++|+.+++
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~   40 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY   40 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence            4689999999999999999888888998766654

>PLN00203 glutamyl-tRNA reductase

Probab=95.31  E-value=0.11  Score=45.04  Aligned_cols=45  Identities=29%  Similarity=0.471  Sum_probs=39.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +.+|+|+| +|.+|.++++.+...|+ +|+++.|+.++.+.+.++++
T Consensus       266 ~kkVlVIG-AG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~  311 (519)
T PLN00203        266 SARVLVIG-AGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP  311 (519)
T ss_pred             CCEEEEEe-CHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC
Confidence            68999999 79999999998888998 89999999999888775664

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=95.29  E-value=0.29  Score=37.95  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=63.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhc-
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMF-  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~-  150 (192)
                      ...+....++||-.|  .+.|..++.+++..+  .+|+.++.+++..+.+++   +.|.+.-+..... +..+.+.++. 
T Consensus        62 ~l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l~~  138 (234)
T PLN02781         62 MLVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS-DALSALDQLLN  138 (234)
T ss_pred             HHHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHHh
Confidence            345566788999998  356776777777653  499999999998888874   3455433333333 4544444432 


Q ss_pred             ---cCCc-----cccc---HHHHHHHHHhhcCCCeEEE
Q 029543          151 ---LCWV-----DFVG---IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ---~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~  177 (192)
                         .+.+     |+--   ...++.+++.+++||++++
T Consensus       139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence               1123     3321   3478889999999997654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.27  E-value=0.052  Score=48.38  Aligned_cols=52  Identities=23%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH---------------------HHHHHHHhcCCCeeeec
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE---------------------KVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~---------------------~~~~~~~~~g~~~vi~~  136 (192)
                      .+++|+|+| +|+.|+.++..++..|.+|++.++.+.                     +.++++ ++|++..++.
T Consensus       309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~-~~Gv~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIG-AGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFT-AMGIDFHLNC  381 (639)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHH-HCCeEEEcCC
Confidence            489999999 899999999999999999999987752                     456667 8888765554

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.26  E-value=0.021  Score=45.08  Aligned_cols=36  Identities=17%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      |||+||+|.+|..+++.+...|.+|++++|++++.+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   36 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGA   36 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCC
Confidence            689999999999999888888999999999876543

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=95.25  E-value=0.76  Score=37.16  Aligned_cols=107  Identities=12%  Similarity=0.135  Sum_probs=68.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----CeeeecCCcccHHH---HHHhhccC-C
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF----DDAFNYKEEPDLDV---ALKRMFLC-W  153 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~---~i~~~~~~-g  153 (192)
                      ..++.|+|+|.-+|.|..++.-+-..|.+|++....++..+.++.+..-    +..+|..+++.+.+   .+++..++ |
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~g  106 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDG  106 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccc
Confidence            3567799999999999988888888999999999888887777633311    12456555423433   33333333 3


Q ss_pred             c----ccc--------------------------cH-HHHHHHHHhhcCC-Ce-EEEeeCCCCCcccc
Q 029543          154 V----DFV--------------------------GI-EYCRSLLLVLLFR-PL-KIMENDSGSTPIPF  188 (192)
Q Consensus       154 ~----d~~--------------------------g~-~~~~~~~~~l~~~-G~-v~~G~~~~~~~~~~  188 (192)
                      .    ++.                          |. ......+..+|+. |+ |.++...|..+.|.
T Consensus       107 LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p~  174 (322)
T KOG1610|consen  107 LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALPA  174 (322)
T ss_pred             ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCcc
Confidence            2    222                          21 2334445566654 75 68888888776654

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.23  E-value=0.062  Score=41.50  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .++.++|+||++++|..++.-....|++|+++.++.++
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~   41 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEE   41 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence            57899999999999998887777889998877777553

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.23  E-value=0.063  Score=38.35  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      |+|.| +|++|.+.+...+..|.+|..+++++ +.+.++ +.|.
T Consensus         1 I~I~G-~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-~~g~   41 (151)
T PF02558_consen    1 ILIIG-AGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-EQGL   41 (151)
T ss_dssp             EEEES-TSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-HHCE
T ss_pred             CEEEC-cCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-heeE
Confidence            68999 89999988877766899999999888 778777 6554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=95.21  E-value=0.076  Score=40.40  Aligned_cols=39  Identities=15%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      |||+||+|-+|..++..+...|..|+...+++.......
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~   39 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEE   39 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHH
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccc
Confidence            799999999999999999999999998888877655544

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.19  E-value=0.054  Score=48.37  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++|+|+| +|+.|+.++..++..|++|+++++.+
T Consensus       326 ~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIG-AGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            588999999 89999999999999999999998753

>PLN03013 cysteine synthase

Probab=95.19  E-value=0.27  Score=41.66  Aligned_cols=58  Identities=26%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~  135 (192)
                      +...+.+|.+.+|...+|..|..++..|+.+|.+++++..   +++|.+.++ .+|++.++.
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ir-a~GAeVi~v  227 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLK-AFGAELVLT  227 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HcCCEEEEE
Confidence            4456678866667777999999999999999997766643   467889998 999987654

>PLN02565 cysteine synthase

Probab=95.17  E-value=0.32  Score=39.63  Aligned_cols=57  Identities=26%  Similarity=0.277  Sum_probs=44.9

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAF  134 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi  134 (192)
                      +...+.+|.+.+|...+|..|+.++..|+.+|.+++++..   ++.|++.++ .+|++.++
T Consensus        59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~-~~GA~V~~  118 (322)
T PLN02565         59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILL-AFGAELVL  118 (322)
T ss_pred             HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-HcCCEEEE
Confidence            4445578877677777999999999999999997666554   468889998 99997654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.15  E-value=0.24  Score=39.12  Aligned_cols=50  Identities=20%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ...++.++.+||=.| +| .|..+..+++..+++|++++.+++-.+.+++..
T Consensus        46 ~~l~l~~~~~VLDiG-cG-~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~   95 (263)
T PTZ00098         46 SDIELNENSKVLDIG-SG-LGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN   95 (263)
T ss_pred             HhCCCCCCCEEEEEc-CC-CChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence            556788999999998 44 466667777777889999999999888888433

>PLN02778 3,5-epimerase/4-reductase

Probab=95.13  E-value=0.097  Score=42.04  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHhcCCCeeeecC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD----LLKNKFGFDDAFNYK  137 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~----~~~~~~g~~~vi~~~  137 (192)
                      ...+|||+||+|-+|..+++.+...|.+|+...+.....+    .++ ..+.|.||+..
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~-~~~~D~ViH~A   65 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADID-AVKPTHVFNAA   65 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHH-hcCCCEEEECC
Confidence            3468999999999999999998888998876543322222    233 55788888644

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.067  Score=46.38  Aligned_cols=46  Identities=20%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             CCCCEEEEeCCCchHHHHHH-HHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVG-QFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~-q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      -.|++|||+||+|++|.-.+ |+++. +. +++..++++.++.....++
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~E~~~~~i~~el  295 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRDEYKLYLIDMEL  295 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCchHHHHHHHHHH
Confidence            36899999999999998555 67766 55 8999999988776655333

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.11  E-value=0.065  Score=41.30  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+.+++|+||+|++|..+++-....|++|+.+.++
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~   39 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK   39 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999999998777889988776643

>PLN02572 UDP-sulfoquinovose synthase

Probab=95.08  E-value=0.043  Score=46.69  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=30.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      .+++|||+||+|.||..+++.+...|++|+++++
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            5688999999999999999888888999999864

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.07  E-value=0.14  Score=34.79  Aligned_cols=46  Identities=24%  Similarity=0.349  Sum_probs=38.3

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~  135 (192)
                      |+|.| .|.+|..+++..+..+.+|++++.++++.+.++ +.|.. ++.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-~~~~~-~i~   46 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELR-EEGVE-VIY   46 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTSE-EEE
T ss_pred             eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-hcccc-ccc
Confidence            68899 899999999999886669999999999999998 77754 443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK00811 spermidine synthase; Provisional

Probab=95.04  E-value=0.23  Score=39.72  Aligned_cols=92  Identities=11%  Similarity=0.005  Sum_probs=55.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC-----C--CeeeecCCcccHHHHHHhhccCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG-----F--DDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g-----~--~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ...++||+.| + |.|..+..+++..+. +|++++.+++-.+.+++.+.     .  +.-+..... |..+.+.. ..+.
T Consensus        75 ~~p~~VL~iG-~-G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~-Da~~~l~~-~~~~  150 (283)
T PRK00811         75 PNPKRVLIIG-G-GDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG-DGIKFVAE-TENS  150 (283)
T ss_pred             CCCCEEEEEe-c-CchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC-chHHHHhh-CCCc
Confidence            3467899999 3 447777778887666 89999999998888884332     1  111111122 34444433 2222


Q ss_pred             c-----ccc---c-------HHHHHHHHHhhcCCCeEEE
Q 029543          154 V-----DFV---G-------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~-----d~~---g-------~~~~~~~~~~l~~~G~v~~  177 (192)
                      +     |..   +       .+.++.+.+.|+++|++++
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~  189 (283)
T PRK00811        151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA  189 (283)
T ss_pred             ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            2     432   2       2246778899999996543

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.01  E-value=0.17  Score=43.03  Aligned_cols=34  Identities=32%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVV-GSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi-~~~~~  117 (192)
                      .|.+|+|.| .|.+|..+++.+...|++|+ +.|.+
T Consensus       236 ~Gk~VaVqG-~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        236 EGKTVVVSG-SGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            689999999 99999999999999999998 44444

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.98  E-value=0.34  Score=40.10  Aligned_cols=56  Identities=25%  Similarity=0.408  Sum_probs=38.1

Q ss_pred             HHhCCCCCCEEE-EeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe
Q 029543           77 EICSPKKGEYVY-VSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDD  132 (192)
Q Consensus        77 ~~~~~~~g~~Vl-V~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~  132 (192)
                      .....++|++|+ ...|.||==..++|+....|..|++.+.+++|+..+++   ++|...
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n  209 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN  209 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence            345788998887 44444444444444444446678999999999988863   578874

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.94  E-value=0.1  Score=40.88  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHH-HHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLD-VALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~-~~i~~~~  150 (192)
                      ...++.||++|+=.| + |.|.+...++++.|-  +|+..+.++++.+.++++   +|.+..+..... |+. +...+..
T Consensus        34 ~~l~i~pG~~VlEaG-t-GSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~-Dv~~~g~~~~~  110 (247)
T PF08704_consen   34 MRLDIRPGSRVLEAG-T-GSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR-DVCEEGFDEEL  110 (247)
T ss_dssp             HHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES--GGCG--STT-
T ss_pred             HHcCCCCCCEEEEec-C-CcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec-ceecccccccc
Confidence            457899999999988 4 458888889988763  999999999999888753   466532222111 222 1111111


Q ss_pred             cCCc-----cccc-HHHHHHHHHhh-cCCCeEE
Q 029543          151 LCWV-----DFVG-IEYCRSLLLVL-LFRPLKI  176 (192)
Q Consensus       151 ~~g~-----d~~g-~~~~~~~~~~l-~~~G~v~  176 (192)
                      ...+     |.-. ...+..+.+.| +++|++.
T Consensus       111 ~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~  143 (247)
T PF08704_consen  111 ESDFDAVFLDLPDPWEAIPHAKRALKKPGGRIC  143 (247)
T ss_dssp             TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEE
T ss_pred             cCcccEEEEeCCCHHHHHHHHHHHHhcCCceEE
Confidence            1122     4444 45888999999 7888653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.91  E-value=0.7  Score=35.93  Aligned_cols=91  Identities=16%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCcccc-
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV-  157 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~d~~-  157 (192)
                      ....++++||-.| +|+ |..+..+++ .|.+|+++|.+++.++.+++.......+..+-+ ++     ....+.+|.+ 
T Consensus        38 l~~~~~~~vLDiG-cG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~-----~~~~~~fD~V~  108 (251)
T PRK10258         38 LPQRKFTHVLDAG-CGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAGDIE-SL-----PLATATFDLAW  108 (251)
T ss_pred             cCccCCCeEEEee-CCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cC-----cCCCCcEEEEE
Confidence            3444678899999 565 766666654 578999999999999988833322222221111 10     0111112221 


Q ss_pred             ---------c-HHHHHHHHHhhcCCCeEEEe
Q 029543          158 ---------G-IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       158 ---------g-~~~~~~~~~~l~~~G~v~~G  178 (192)
                               . ...+..+.+.|+|+|.+++.
T Consensus       109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258        109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             ECchhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                     1 24788889999999966544

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.89  E-value=0.28  Score=34.47  Aligned_cols=51  Identities=14%  Similarity=0.136  Sum_probs=36.1

Q ss_pred             EEEeCCCchHHHHHHHHHHHcC--CEEEEEeC--CHHHHHHHHHhcCCCeeeecC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAG--CHVVGSAG--SKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~--~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      |.|.|++|.||..++.+.+...  ++|++.+-  +-+++....++|.+..++-.+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~   55 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIAD   55 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESS
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcC
Confidence            6799999999999999999886  57776663  334433333378888776544

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=94.88  E-value=0.16  Score=43.66  Aligned_cols=45  Identities=13%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+.+++|+| +|++|..++......|++|++.+|++++.+.+.+++
T Consensus       331 ~~k~vlIiG-aGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~  375 (477)
T PRK09310        331 NNQHVAIVG-AGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC  375 (477)
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            578999999 799999999888889999999999988877665343

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.88  E-value=0.18  Score=39.22  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEe
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                      .|++++|+||+  +++|..+++.+...|++|+++.
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~   39 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY   39 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence            58899999987  4899999988888999988875

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.87  E-value=0.12  Score=45.35  Aligned_cols=48  Identities=27%  Similarity=0.370  Sum_probs=43.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAF  134 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi  134 (192)
                      ++++|.| .|.+|+.+++..+..|.++++++.++++.+.++ +.|...+.
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~-~~g~~~i~  465 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELR-ERGIRAVL  465 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HCCCeEEE
Confidence            7899999 999999999999999999999999999999998 77765544

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=94.86  E-value=0.099  Score=41.90  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +|||+||+|-+|..+++.+...| +|+++++.
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~   32 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVH   32 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccc
Confidence            69999999999999998887778 78888764

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=94.83  E-value=0.54  Score=36.77  Aligned_cols=90  Identities=18%  Similarity=0.083  Sum_probs=58.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVD  155 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~d  155 (192)
                      ......++++||=.| +|. |.++..+++.. +.+|++++.++.-++.++ +.+.+.+. .    +..+ +.  ..+.+|
T Consensus        23 ~~l~~~~~~~vLDlG-cG~-G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-~~~~~~~~-~----d~~~-~~--~~~~fD   91 (255)
T PRK14103         23 ARVGAERARRVVDLG-CGP-GNLTRYLARRWPGAVIEALDSSPEMVAAAR-ERGVDART-G----DVRD-WK--PKPDTD   91 (255)
T ss_pred             HhCCCCCCCEEEEEc-CCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHH-hcCCcEEE-c----Chhh-CC--CCCCce
Confidence            444567889999998 444 77888888775 679999999999888888 65544321 1    2221 10  011222


Q ss_pred             ---------ccc--HHHHHHHHHhhcCCCeEEE
Q 029543          156 ---------FVG--IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       156 ---------~~g--~~~~~~~~~~l~~~G~v~~  177 (192)
                               .+.  ...+..+.+.|+|+|++++
T Consensus        92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~  124 (255)
T PRK14103         92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAV  124 (255)
T ss_pred             EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence                     122  2377888999999996543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.81  E-value=0.061  Score=44.58  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..+.+|+|+||+|-||..++..+...|.+|++++|..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            3578999999999999999999988999999999754

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.81  E-value=0.09  Score=40.83  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=30.0

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+++++|+||+  |++|..++......|++|++++|+
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            46889999988  489999887777789999999887

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.80  E-value=0.36  Score=37.76  Aligned_cols=90  Identities=21%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCCcc---
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCWVD---  155 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g~d---  155 (192)
                      ..+.+||=.|  +|.|..+..+++. |.+|++++.+++.++.+++.   .|...-+..... +..+ +.....+.+|   
T Consensus        43 ~~~~~vLDiG--cG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-d~~~-l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAG--GGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-AAQD-IAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeC--CCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-CHHH-HhhhcCCCCCEEE
Confidence            4567888887  4567788888875 88999999999988888733   232211111111 2222 1111111222   


Q ss_pred             ------ccc--HHHHHHHHHhhcCCCeEE
Q 029543          156 ------FVG--IEYCRSLLLVLLFRPLKI  176 (192)
Q Consensus       156 ------~~g--~~~~~~~~~~l~~~G~v~  176 (192)
                            .+.  ...+..+.+.|+|+|+++
T Consensus       118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~  146 (255)
T PRK11036        118 FHAVLEWVADPKSVLQTLWSVLRPGGALS  146 (255)
T ss_pred             ehhHHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence                  122  236888999999999653

>PLN02240 UDP-glucose 4-epimerase

Probab=94.80  E-value=0.066  Score=43.61  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+++|+|+||+|.+|..+++.+...|.+|+++++.
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            36789999999999999998888889999999864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=94.80  E-value=1.4  Score=34.81  Aligned_cols=52  Identities=23%  Similarity=0.230  Sum_probs=35.6

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCe
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDD  132 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~  132 (192)
                      ..+++|++||=.| +| .|..++.+++..+  ..|++++.++++++.+++   ++|.+.
T Consensus        67 l~~~~g~~VLDl~-ag-~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~  123 (264)
T TIGR00446        67 LEPDPPERVLDMA-AA-PGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN  123 (264)
T ss_pred             hCCCCcCEEEEEC-CC-chHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence            4678899888776 33 3444555555543  389999999999988864   346544

>PRK01581 speE spermidine synthase; Validated

Probab=94.77  E-value=0.59  Score=38.77  Aligned_cols=92  Identities=17%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC---------C-CeeeecCCcccHHHHHHhhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG---------F-DDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g---------~-~~vi~~~~~~~~~~~i~~~~  150 (192)
                      ...++|||.|  ||.|..+..+++..+. +|++++.+++-.+.++ ++.         . +.-+...-. |..+.+....
T Consensus       149 ~~PkrVLIIG--gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr-~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~~~  224 (374)
T PRK01581        149 IDPKRVLILG--GGDGLALREVLKYETVLHVDLVDLDGSMINMAR-NVPELVSLNKSAFFDNRVNVHVC-DAKEFLSSPS  224 (374)
T ss_pred             CCCCEEEEEC--CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hccccchhccccCCCCceEEEEC-cHHHHHHhcC
Confidence            3456999999  4466677777776655 9999999999899888 521         1 111111112 4444444322


Q ss_pred             cC-Cc---cc---cc--------HHHHHHHHHhhcCCCeEEE
Q 029543          151 LC-WV---DF---VG--------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~-g~---d~---~g--------~~~~~~~~~~l~~~G~v~~  177 (192)
                      .. .+   |.   .+        .+.++.+.+.|+|+|++++
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~  266 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC  266 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            11 22   42   22        2366788899999996544

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.76  E-value=0.33  Score=38.90  Aligned_cols=68  Identities=18%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHhcCCCeeeec
Q 029543           65 IMPSVTAFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL-LKNKFGFDDAFNY  136 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~-~~~~~g~~~vi~~  136 (192)
                      ||.....+..+ +..++ -.|++|+|.|.+.-+|.-+++++...|++|+.+.+....++. ++   .+|.+|..
T Consensus       139 PcTp~ai~~ll-~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~---~ADIVIsA  208 (286)
T PRK14175        139 PCTPLGIMEIL-KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLK---DADVIVSA  208 (286)
T ss_pred             CCcHHHHHHHH-HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHh---hCCEEEEC
Confidence            55555555555 33333 369999999966669999999999999999998876554433 33   47776653

>PLN02206 UDP-glucuronate decarboxylase

Probab=94.74  E-value=0.067  Score=45.52  Aligned_cols=35  Identities=26%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+.+|||+||+|-||..+++.+...|.+|+++++.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~  152 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF  152 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence            45889999999999999999888889999998754

>PLN02366 spermidine synthase

Probab=94.71  E-value=0.41  Score=38.81  Aligned_cols=92  Identities=20%  Similarity=0.088  Sum_probs=55.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------CeeeecCCcccHHHHHHhhccCCc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF------DDAFNYKEEPDLDVALKRMFLCWV  154 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~------~~vi~~~~~~~~~~~i~~~~~~g~  154 (192)
                      ...++||+.| +|. |.++..+++..+. +|.+++.+++-.+.+++.+..      +.-+..... |..+.+++...+.+
T Consensus        90 ~~pkrVLiIG-gG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~-Da~~~l~~~~~~~y  166 (308)
T PLN02366         90 PNPKKVLVVG-GGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG-DGVEFLKNAPEGTY  166 (308)
T ss_pred             CCCCeEEEEc-CCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC-hHHHHHhhccCCCC
Confidence            4578999999 444 6677788887766 899999998888888733321      111111112 33334443312212


Q ss_pred             -----ccc---c-------HHHHHHHHHhhcCCCeEE
Q 029543          155 -----DFV---G-------IEYCRSLLLVLLFRPLKI  176 (192)
Q Consensus       155 -----d~~---g-------~~~~~~~~~~l~~~G~v~  176 (192)
                           |+.   +       .+.++.+.++|+|+|+++
T Consensus       167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence                 432   1       135778889999999653

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=94.71  E-value=0.18  Score=42.13  Aligned_cols=34  Identities=24%  Similarity=0.150  Sum_probs=28.0

Q ss_pred             CCCCEEEEeCCCchHHHH--HHHHHHHcCCEEEEEeC
Q 029543           82 KKGEYVYVSAASGAVGQL--VGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~--~~q~a~~~Ga~Vi~~~~  116 (192)
                      .-++++||+|+++++|+.  +++.+ ..|++++++++
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~   74 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF   74 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence            346899999999999998  56666 78999888874

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=94.67  E-value=0.089  Score=42.03  Aligned_cols=51  Identities=29%  Similarity=0.422  Sum_probs=37.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH------HHH-HHHHHhcCCCeeeecC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK------EKV-DLLKNKFGFDDAFNYK  137 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~------~~~-~~~~~~~g~~~vi~~~  137 (192)
                      +|||+|++|.+|..+.+.++..|.+|+.+.+++      +.. +.++ +...|.||+..
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~-~~~pd~Vin~a   59 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLE-AFKPDVVINCA   59 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHH-HH--SEEEE--
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHH-HhCCCeEeccc
Confidence            699999999999999999998898999996553      232 3333 66788888864

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.66  E-value=0.2  Score=41.75  Aligned_cols=40  Identities=28%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             EEEeCCCchHHHHHHHHHHHcC-C-EEEEEeCCHHHHHHHHHh
Q 029543           87 VYVSAASGAVGQLVGQFAKLAG-C-HVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~G-a-~Vi~~~~~~~~~~~~~~~  127 (192)
                      |+|+|+ |.+|..+++.+...+ . +|++.+|+.++.+.+.++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~   42 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK   42 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh
Confidence            789997 999999998877665 5 899999999998887633

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=94.65  E-value=0.092  Score=42.87  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~  124 (192)
                      .+|||+||+|-+|..+++.+... |.+|++++++.++...+
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~   42 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL   42 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence            36999999999999999887765 68999999877654443

>TIGR01746 Thioester-redct thioester reductase domain

Probab=94.64  E-value=0.065  Score=43.52  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=29.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~  119 (192)
                      +|+|+||+|.+|..+++.....|  ++|++++|+.+
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~   36 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS   36 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence            48999999999999998777777  78999998765

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=94.63  E-value=0.72  Score=35.37  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=57.4

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCCcccHHHHHHhhccCCc
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF---GFDDAFNYKEEPDLDVALKRMFLCWV  154 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~~~vi~~~~~~~~~~~i~~~~~~g~  154 (192)
                      .....++.+||-.| +|. |.....+++ .+++++.++.+++..+.+++.+   +..  ++.... ++.+.... ..+.+
T Consensus        43 ~~~~~~~~~vLdiG-~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~-~~~~~~~~-~~~~f  115 (233)
T PRK05134         43 HAGGLFGKRVLDVG-CGG-GILSESMAR-LGADVTGIDASEENIEVARLHALESGLK--IDYRQT-TAEELAAE-HPGQF  115 (233)
T ss_pred             hccCCCCCeEEEeC-CCC-CHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEec-CHHHhhhh-cCCCc
Confidence            33455788999999 554 777777777 4789999999988887776322   221  222222 33322211 11222


Q ss_pred             c---------ccc--HHHHHHHHHhhcCCCeEEEee
Q 029543          155 D---------FVG--IEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       155 d---------~~g--~~~~~~~~~~l~~~G~v~~G~  179 (192)
                      |         ...  ...+..+.+.|+++|++++..
T Consensus       116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            3         222  236788889999999765544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.47  E-value=0.29  Score=37.11  Aligned_cols=95  Identities=19%  Similarity=0.124  Sum_probs=55.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ...+++++++||-.| +|. |..+..+++.. .+|+.++.+++..+.+++.   ++.+. ++.... +..+....  .+.
T Consensus        72 ~~l~~~~~~~VLeiG-~Gs-G~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~-d~~~~~~~--~~~  144 (212)
T PRK00312         72 ELLELKPGDRVLEIG-TGS-GYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHG-DGWKGWPA--YAP  144 (212)
T ss_pred             HhcCCCCCCEEEEEC-CCc-cHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEEC-CcccCCCc--CCC
Confidence            456788999999998 443 55556666653 4899999998887777643   34432 111111 11111110  012


Q ss_pred             c-----ccccHHHHHHHHHhhcCCCeEEEe
Q 029543          154 V-----DFVGIEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       154 ~-----d~~g~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +     +..-........+.|+++|++++.
T Consensus       145 fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        145 FDRILVTAAAPEIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCEEEEccCchhhhHHHHHhcCCCcEEEEE
Confidence            2     332234556778999999965443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.46  E-value=0.49  Score=34.62  Aligned_cols=84  Identities=20%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-----cc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE-KVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-----DF  156 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-----d~  156 (192)
                      .+++|.|+| -|.-|...++-.|-.|.+|++..+..+ ..+.++ +-|... .      ++.+.+++.  +-+     |.
T Consensus         3 ~~k~IAViG-yGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-~~Gf~v-~------~~~eAv~~a--DvV~~L~PD~   71 (165)
T PF07991_consen    3 KGKTIAVIG-YGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-ADGFEV-M------SVAEAVKKA--DVVMLLLPDE   71 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-HTT-EC-C------EHHHHHHC---SEEEE-S-HH
T ss_pred             CCCEEEEEC-CChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-HCCCee-c------cHHHHHhhC--CEEEEeCChH
Confidence            578999999 899999999999999999998888876 677777 777742 1      344444432  101     44


Q ss_pred             ccHHHH-HHHHHhhcCCCeEEE
Q 029543          157 VGIEYC-RSLLLVLLFRPLKIM  177 (192)
Q Consensus       157 ~g~~~~-~~~~~~l~~~G~v~~  177 (192)
                      +-.+.+ +.....|+++-.+.+
T Consensus        72 ~q~~vy~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   72 VQPEVYEEEIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHHHHHHHHHS-TT-EEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEe
Confidence            444444 444457777765544

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=94.44  E-value=0.084  Score=47.22  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=33.5

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKV  121 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~  121 (192)
                      .++.+|||+||+|-+|..+++.+... |.+|+++++.+.+.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~  353 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAI  353 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhh
Confidence            46788999999999999999877764 68999999876543

>TIGR01138 cysM cysteine synthase B

Probab=94.42  E-value=0.85  Score=36.57  Aligned_cols=57  Identities=19%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~  135 (192)
                      +...+.+|++|+... +|..|..++..|+.+|.+++++..   ++.|++.++ .+|++.++.
T Consensus        52 ~~g~~~~g~~vv~aS-sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v~~v  111 (290)
T TIGR01138        52 KRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMR-AYGAELILV  111 (290)
T ss_pred             HcCCCCCCCEEEEEC-CChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-HcCCEEEEe
Confidence            344556777776655 999999999999999997666554   357888888 999986543

Alternate name: O-acetylserine (thiol)-lyase

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.39  E-value=0.079  Score=44.37  Aligned_cols=44  Identities=27%  Similarity=0.279  Sum_probs=38.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..-++|+|.||+|.+|+..++.++.+|..|.+.+|+.++.+.+.
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~  120 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLL  120 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhh
Confidence            34578999999999999999999999999999999988766654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.38  E-value=0.18  Score=43.20  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++|+|+| .|++|+.++.+++..|.+|+++++++
T Consensus        15 ~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         15 QGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            478999999 89999999999999999999998664

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=94.38  E-value=0.066  Score=42.43  Aligned_cols=51  Identities=16%  Similarity=0.278  Sum_probs=40.4

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-----------H--hcCCCeeeecC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK-----------N--KFGFDDAFNYK  137 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-----------~--~~g~~~vi~~~  137 (192)
                      |+|+|++|-||..+++..+..|-.|++++|++.+.+...           +  .+++|.+||..
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA   64 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA   64 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence            689999999999999999999999999999986544332           0  23578888854

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=94.35  E-value=0.099  Score=44.43  Aligned_cols=35  Identities=20%  Similarity=0.093  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +..+|+|+||+|-||..+++.+...|.+|+++++.
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999888889999999864

>PRK11761 cysM cysteine synthase B; Provisional

Probab=94.34  E-value=0.84  Score=36.73  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeeec
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +...+.+|++|+... +|..|+.++..|+.+|.+++++..   ++.|.+.++ .+|++.++..
T Consensus        56 ~~g~~~~g~~vv~aS-sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v~~~~  116 (296)
T PRK11761         56 KRGEIKPGDTLIEAT-SGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMR-AYGAELILVP  116 (296)
T ss_pred             HcCCCCCCCEEEEeC-CChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HcCCEEEEeC
Confidence            344456778876655 999999999999999997655553   357888888 9999876544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.31  E-value=0.16  Score=38.65  Aligned_cols=35  Identities=23%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|.+|+|.| .|.+|..-++.....|++|++++...
T Consensus         8 ~gk~vlVvG-gG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVG-GGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            478999999 89999999999989999999888654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.28  E-value=0.028  Score=45.89  Aligned_cols=79  Identities=18%  Similarity=0.018  Sum_probs=53.3

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEE-eCCCc
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYV-SAASG   94 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV-~Ga~G   94 (192)
                      .++..++.|.+.+++|+|+++++++...|.....+.+.....|+.+|.+......+...-  ..+++.||+|.| += ..
T Consensus        16 l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~--V~~~k~GDrVgV~~~-~~   92 (339)
T COG1064          16 LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEG--VTGLKVGDRVGVGWL-VI   92 (339)
T ss_pred             ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCC--CccCCCCCEEEecCc-cC
Confidence            556778888999999999999999998877666665555557788887732222221111  125788999998 43 34


Q ss_pred             hHH
Q 029543           95 AVG   97 (192)
Q Consensus        95 ~iG   97 (192)
                      +.|
T Consensus        93 ~Cg   95 (339)
T COG1064          93 SCG   95 (339)
T ss_pred             CCC
Confidence            444

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.24  E-value=0.17  Score=40.43  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=36.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +|.|+| +|.+|.+.+......|.+|+.+++++++.+.++ +.|.
T Consensus         2 ~I~IiG-~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-~~g~   44 (304)
T PRK06522          2 KIAILG-AGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-ENGL   44 (304)
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-HcCC
Confidence            589999 899999888777777899999999888888887 5554

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=94.24  E-value=0.19  Score=38.71  Aligned_cols=41  Identities=20%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             CCC--chHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHhcCCC
Q 029543           91 AAS--GAVGQLVGQFAKLAGCHVVGSAGSKEK----VDLLKNKFGFD  131 (192)
Q Consensus        91 Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~~----~~~~~~~~g~~  131 (192)
                      |++  ++||..+++-....|++|++++++.++    ++.+.++.+.+
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~   47 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE   47 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc
Confidence            456  999999999999999999999999987    44444356654

...

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=94.23  E-value=1.8  Score=37.24  Aligned_cols=99  Identities=18%  Similarity=0.136  Sum_probs=58.4

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeec-CCcccHHHHHHhhccCC
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDDAFNY-KEEPDLDVALKRMFLCW  153 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~vi~~-~~~~~~~~~i~~~~~~g  153 (192)
                      .+++|++||=.. +++=|. .+++|..++  ..|++.+.+++|+..+++   ++|...+.-. .+...+.+...... +.
T Consensus       110 ~~~pg~~VLD~C-AAPGgK-Tt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~f-D~  186 (470)
T PRK11933        110 DDNAPQRVLDMA-AAPGSK-TTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETF-DA  186 (470)
T ss_pred             CCCCCCEEEEeC-CCccHH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhc-Ce
Confidence            678999888665 444443 455555553  289999999999888763   5787753222 22102221111111 11


Q ss_pred             c--c--ccc--------------------------HHHHHHHHHhhcCCCeEEEeeCC
Q 029543          154 V--D--FVG--------------------------IEYCRSLLLVLLFRPLKIMENDS  181 (192)
Q Consensus       154 ~--d--~~g--------------------------~~~~~~~~~~l~~~G~v~~G~~~  181 (192)
                      +  |  |+|                          .+.+..++++|+|||++++...+
T Consensus       187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            1  2  332                          23567889999999988777654

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=94.20  E-value=0.6  Score=38.83  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~  135 (192)
                      +...+.+|.+.+|...+|..|+.++..|+.+|.+++++..   +.+|.+.++ .+|++.++.
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr-~~GA~Vi~~  163 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMR-AFGAELVLT  163 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HcCCEEEEE
Confidence            4445778877777788999999999999999997666644   367888898 999987654

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=94.19  E-value=0.072  Score=38.19  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~  119 (192)
                      +++|+||+|++|..+++.....|+ .|+.+.|+++
T Consensus         2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~   36 (180)
T smart00822        2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGP   36 (180)
T ss_pred             EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence            689999999999999988877887 7888887754

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=94.19  E-value=0.79  Score=39.09  Aligned_cols=53  Identities=15%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCe
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDD  132 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~  132 (192)
                      ...+.+|++||=.| +|+ |..+..+++..  +.+|++++.++++++.+++   ++|.+.
T Consensus       245 ~l~~~~g~~VLDlg-aG~-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  302 (445)
T PRK14904        245 LLNPQPGSTVLDLC-AAP-GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI  302 (445)
T ss_pred             hcCCCCCCEEEEEC-CCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe
Confidence            44677899998777 333 33334444433  3499999999999888763   356543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.18  E-value=0.2  Score=44.50  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=43.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      .++|+|.| .|.+|+..++..+..|.++++++.++++.+.++ +.|...+
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~-~~g~~v~  447 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR-KFGMKVF  447 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH-hcCCeEE
Confidence            36899999 999999999999999999999999999999998 7886543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.16  E-value=0.18  Score=40.35  Aligned_cols=40  Identities=25%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+|.|+| +|.+|...++.+...|.+|+..++++++++.++
T Consensus         4 ~~I~ViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (291)
T PRK06035          4 KVIGVVG-SGVMGQGIAQVFARTGYDVTIVDVSEEILKNAM   43 (291)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            5799999 899999998888888999999999998877543

>TIGR00417 speE spermidine synthase

Probab=94.16  E-value=0.67  Score=36.73  Aligned_cols=92  Identities=17%  Similarity=0.077  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------CeeeecCCcccHHHHHHhhccC-Cc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF------DDAFNYKEEPDLDVALKRMFLC-WV  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~------~~vi~~~~~~~~~~~i~~~~~~-g~  154 (192)
                      ..++||+.| +|. |..+..+++.... ++++++.+++-.+.+++.+..      +.-++.... |..+.+++.... .+
T Consensus        72 ~p~~VL~iG-~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        72 NPKHVLVIG-GGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-DGFKFLADTENTFDV  148 (270)
T ss_pred             CCCEEEEEc-CCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-chHHHHHhCCCCccE
Confidence            456999999 444 5556666776645 899999998877877732211      111111112 333333322111 11


Q ss_pred             ---ccc---c-------HHHHHHHHHhhcCCCeEEE
Q 029543          155 ---DFV---G-------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       155 ---d~~---g-------~~~~~~~~~~l~~~G~v~~  177 (192)
                         |..   +       .+.++.+.+.|+++|++++
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~  184 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA  184 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence               322   2       2356788899999996544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02928 oxidoreductase family protein

Probab=94.13  E-value=0.1  Score=43.01  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++.|+| .|.||+.+++.++.+|++|++.+++
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence            578999999 9999999999999999999999986

>PLN02970 serine racemase

Probab=94.08  E-value=1.7  Score=35.53  Aligned_cols=51  Identities=22%  Similarity=0.115  Sum_probs=39.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeeecC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      +.|+... +|..|..++..|+.+|.+++++..   +++|.+.++ .+|++.+....
T Consensus        76 ~~vv~aS-sGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~-~~GA~Vi~~~~  129 (328)
T PLN02970         76 KGVVTHS-SGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVI-RYGGIITWCEP  129 (328)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-hcCCEEEEeCC
Confidence            4555554 999999999999999997666654   467788888 99998665443

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.07  E-value=0.18  Score=43.26  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++|+|.| .|+.|+.++++++..|+.|++.+++..+...+.+++|.
T Consensus        14 ~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi   60 (473)
T PRK00141         14 LSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGV   60 (473)
T ss_pred             cCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCc
Confidence            567899999 99999999999999999999999876554433224443

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.06  E-value=0.15  Score=41.09  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+  .|||...++.+...|++|++.++.
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~   43 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV   43 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc
Confidence            58999999975  899999999999999999987643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.06  E-value=0.15  Score=32.28  Aligned_cols=33  Identities=21%  Similarity=0.122  Sum_probs=29.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +|+|.| +|.+|.-++...+.+|.+|..+.+++.
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999 899999999999999999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		1e-40
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		3e-37
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		4e-23
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		9e-23
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		9e-23
4b7c_A	336	Crystal Structure Of Hypothetical Protein Pa1648 Fr		1e-15
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		1e-09
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		1e-09
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		1e-09
2zb3_A	353	Crystal Structure Of Mouse 15-Ketoprostaglandin Del		4e-09
2w4q_A	357	Crystal Structure Of Human Zinc-Binding Alcohol Deh		4e-09
2zb4_A	357	Crystal Structure Of Human 15-Ketoprostaglandin Del		5e-09
1vj1_A	363	Crystal Structure Of Putative Nadph-Dependent Oxido		5e-08
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		1e-05
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		3e-05
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		8e-05
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-04
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		1e-04

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 116/202 (57%), Gaps = 60/202 (29%)
Query: 14  KIQNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPG---------- 62
           +I+N+ +K    EGS D V++KNLYLSCDPYM+ RM K++ S   SF PG          
Sbjct: 26  EIKNVTIKLKVPEGSND-VVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAK 84
Query: 63  ------------------------GVIMPSVT------------------------AFAG 74
                                    +I P+ T                        A+AG
Sbjct: 85  VLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAG 144
Query: 75  LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAF 134
            +E+CSPKKGE V+VSAASGAVGQLVGQFAK+ GC+VVGSAGSKEKVDLLK+KFGFD+AF
Sbjct: 145 FHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAF 204
Query: 135 NYKEEPDLDVALKRMFLCWVDF 156
           NYKEE DL  ALKR F   +D 
Sbjct: 205 NYKEEQDLSAALKRYFPDGIDI 226

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 106/194 (54%), Gaps = 63/194 (32%)
Query: 25  EGSKDTVLLKNLYLSCDPYMQKRMSKLDTS---LFYSFCPG------------------- 62
           EG+ ++VL+KNLYLSCDPYM+ RM K D S   L  ++ PG                   
Sbjct: 36  EGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDY 94
Query: 63  ---------------GVIMPSVTA-------------------------FAGLYEICSPK 82
                           VI P   A                         +AG YE+CSPK
Sbjct: 95  KKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPK 154
Query: 83  KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL 142
           +GE VYVSAASGAVGQLVGQ AK+ GC+VVGSAGSKEKVDLLK KFGFDDAFNYKEE DL
Sbjct: 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL 214
Query: 143 DVALKRMFLCWVDF 156
             ALKR F   +D 
Sbjct: 215 TAALKRCFPNGIDI 228

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 1   MDTSIRNTSKRLCKIQNILKQ---------NAAEGSKDTVLLKN----LYLSCDPYMQKR 47
           +D  +R  SKRL +   ++ Q         N+A  +   VL ++     ++S    ++K 
Sbjct: 50  VDPYMRIASKRLKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKL 109
Query: 48  MSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA 107
           +++    L  S   G + MP +TA+ GL E+C  K GE V VSAA+GAVG +VGQ AKL 
Sbjct: 110 LTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK 169
Query: 108 GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGIEYCR 163
           GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+     + C+ D VG E+  
Sbjct: 170 GCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLN 228
Query: 164 S 164
           +
Sbjct: 229 T 229

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 98/181 (54%), Gaps = 18/181 (9%)
Query: 1   MDTSIRNTSKRLCKIQNILKQNAAE--GSKDTVLLKNLYLSCDPY-----------MQKR 47
           +D  +R  +KRL +   ++ Q  A+   SK+  L K   +   P            ++K 
Sbjct: 45  VDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKL 104
Query: 48  MSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA 107
           +++   ++  S   G V MP +TA+ GL EIC  K GE V V+AA+GAVG +VGQ AKL 
Sbjct: 105 LTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLK 164
Query: 108 GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGIEYCR 163
           GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+     + C+ D VG E+  
Sbjct: 165 GCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSN 223
Query: 164 S 164
           +
Sbjct: 224 T 224

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 98/181 (54%), Gaps = 18/181 (9%)
Query: 1   MDTSIRNTSKRLCKIQNILKQNAAE--GSKDTVLLKNLYLSCDPY-----------MQKR 47
           +D  +R  +KRL +   ++ Q  A+   SK+  L K   +   P            ++K 
Sbjct: 66  VDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKL 125
Query: 48  MSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLA 107
           +++   ++  S   G V MP +TA+ GL EIC  K GE V V+AA+GAVG +VGQ AKL 
Sbjct: 126 LTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLK 185
Query: 108 GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM----FLCWVDFVGIEYCR 163
           GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+     + C+ D VG E+  
Sbjct: 186 GCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSN 244
Query: 164 S 164
           +
Sbjct: 245 T 245

>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From Pseudomonas Aeruginosa. Length = 336

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           M  +TA+  L ++  PK GE V +S A+GAVG + GQ A+L GC VVG AG  EK   L 
Sbjct: 132 MTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV 191
Query: 126 NKFGFDDAFNYKEEPDLDVALKR 148
            + GFD A +YK E DL   LKR
Sbjct: 192 EELGFDGAIDYKNE-DLAAGLKR 213

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
           +++   TA+  L E+    +G+ V V+AA+G  GQ   Q +K A CHV+G+  S EK   
Sbjct: 144 LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF 203
Query: 124 LKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           LK+  G D   NYK EP +   LK+ +   VD V
Sbjct: 204 LKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDVV 235

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
           +++   TA+  L E+    +G+ V V+AA+G  GQ   Q +K A CHV+G+  S EK   
Sbjct: 152 LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF 211
Query: 124 LKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           LK+  G D   NYK EP +   LK+ +   VD V
Sbjct: 212 LKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDVV 243

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
           +++   TA+  L E+    +G+ V V+AA+G  GQ   Q +K A CHV+G+  S EK   
Sbjct: 123 LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF 182
Query: 124 LKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           LK+  G D   NYK EP +   LK+ +   VD V
Sbjct: 183 LKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDVV 214

>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadph Length = 353

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 48  MSKLDTSL---FYSFCPGGVIMPSVTAFAGLYE--ICSPKKGEYVYVSAASGAVGQLVGQ 102
           + K+D  L     S+  G + MP +T+  G+ E    S    + + VS A+GA G L GQ
Sbjct: 116 LEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQ 175
Query: 103 FAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK 137
              L GC  VVG  G++EK   L ++ GFD A NYK
Sbjct: 176 IGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYK 211

>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And 18beta-Glycyrrhetinic Acid Length = 357

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 25  EGSKDTVLLKNLYLSC--DPYMQK------RMSKLDTSL---FYSFCPGGVIMPSVTAFA 73
           E SK T L K  +++    P+  K       + K+D  L     S+  G + MP +T+  
Sbjct: 84  EESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLI 143
Query: 74  GLYEICSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF 130
           G+ E      G  + + VS A+GA G + GQ     GC  VVG  G+ EK  LL ++ GF
Sbjct: 144 GIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF 203
Query: 131 DDAFNYKEE 139
           D A NYK++
Sbjct: 204 DAAINYKKD 212

>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadp And 15-Keto-Pge2 Length = 357

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 25  EGSKDTVLLKNLYLSC--DPYMQK------RMSKLDTSL---FYSFCPGGVIMPSVTAFA 73
           E SK T L K  +++    P+  K       + K+D  L     S+  G + MP +T+  
Sbjct: 89  EESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLI 148
Query: 74  GLYEICSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF 130
           G+ E      G  + + VS A+GA G + GQ     GC  VVG  G+ EK  LL ++ GF
Sbjct: 149 GIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF 208
Query: 131 DDAFNYKEE 139
           D A NYK++
Sbjct: 209 DAAINYKKD 217

>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent Oxidoreductase From Mus Musculus At 2.10 A Resolution Length = 363

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 48  MSKLDTSL---FYSFCPGGVIMPSVTAFAGLYE--ICSPKKGEYVYVSAASGAVGQLVGQ 102
           + K+D  L     S+  G +  P +T+  G+ E    S    +   VS A+GA G L GQ
Sbjct: 126 LEKVDPQLVDGHLSYFLGAIGXPGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQ 185
Query: 103 FAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK 137
              L GC  VVG  G++EK   L ++ GFD A NYK
Sbjct: 186 IGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYK 221

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 38  LSCDPYMQKRMSKLDTSLFYSFCPGGVI-MPSVTAFAGLYEICSPKKGEYVYVSAASGAV 96
           L+ D  + K   KLD      F  G  I +P  TA+  L      K GE V V  ASG V
Sbjct: 130 LAADHTVYKLPEKLD------FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGV 183
Query: 97  GQLVGQFAKLAGCHVVGSAGSKEKVDL-LKNKFGFDDAFNYKEEPDLD 143
           G    Q A+  G  ++G+AG++E   + L+N  G  + FN++E   +D
Sbjct: 184 GLAACQIARAYGLKILGTAGTEEGQKIVLQN--GAHEVFNHREVNYID 229

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 65  IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL 124
           ++  +TA +   E    KKG+YV + AA+G VG ++ Q  K+ G H +  A + EK+ + 
Sbjct: 130 LLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA 189
Query: 125 KNKFGFDDAFNYKEEPDLDVALK 147
           K ++G +   N  +E  L   LK
Sbjct: 190 K-EYGAEYLINASKEDILRQVLK 211

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 57  YSFCPGGVIMP----------------SVTAFAGLYEICSPKKGEYVYVSAASGAVGQLV 100
           Y   P G++MP                 +TAF  L+ + + + G+YV + A    VG   
Sbjct: 120 YVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAA 179
Query: 101 GQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALK 147
            Q  ++AG   + +AGS++K+ + + K G    FNYK+E   +  LK
Sbjct: 180 IQLTRMAGAIPLVTAGSQKKLQMAE-KLGAAAGFNYKKEDFSEATLK 225

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 57  YSFCPGGVIMP----------------SVTAFAGLYEICSPKKGEYVYVSAASGAVGQLV 100
           Y   P G++MP                 +TAF  L+ + + + G+YV + A    VG   
Sbjct: 104 YVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAA 163
Query: 101 GQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALK 147
            Q  ++AG   + +AGS++K+ + + K G    FNYK+E   +  LK
Sbjct: 164 IQLTRMAGAIPLVTAGSQKKLQMAE-KLGAAAGFNYKKEDFSEATLK 209

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
           G+++  +TA   L++    K G+YV + AA+G +G ++  +A+  G  V+G+  ++EK +
Sbjct: 125 GLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAE 184
Query: 123 LLKNKFGFDDAFNYKEE 139
             + K G     NY  +
Sbjct: 185 TAR-KLGCHHTINYSTQ 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	1e-52
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	8e-51
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	5e-41
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-05
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	9e-31
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-15
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-15
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	6e-15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	9e-15
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-14
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	3e-14
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	8e-14
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-13
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	5e-13
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-12
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-12
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	4e-12
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	4e-12
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-11
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-11
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	3e-11
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	3e-11
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	4e-11
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	5e-11
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-10
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-10
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-10
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	2e-10
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	4e-10
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-09
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	5e-09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	5e-09
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-08
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-06
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-06
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-05
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-04
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	8e-04

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score =  170 bits (432), Expect = 1e-52
 Identities = 64/170 (37%), Positives = 80/170 (47%), Gaps = 53/170 (31%)

Query: 31  VLLKNLYLSCDPYMQKRMSKLD---------------------------TSLF----YSF 59
           VLL+ L+LS DPYM+    +L                             +      +  
Sbjct: 41  VLLEALFLSVDPYMRIASKRLKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFI 100

Query: 60  CPG--------------------GVI-MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQ 98
             G                    G I MP +TA+ GL E+C  K GE V VSAA+GAVG 
Sbjct: 101 SDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGS 160

Query: 99  LVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR 148
           +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+
Sbjct: 161 VVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKK 209

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score =  165 bits (421), Expect = 8e-51
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           MP +TA+AG YE+CSPK+GE VYVSAASGAVGQLVGQ AK+ GC+VVGSAGSKEKVDLLK
Sbjct: 138 MPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK 197

Query: 126 NKFGFDDAFNYKEEPDLDVALKR 148
            KFGFDDAFNYKEE DL  ALKR
Sbjct: 198 TKFGFDDAFNYKEESDLTAALKR 220

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score =  140 bits (356), Expect = 5e-41
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 63  GVI-MPSVTAFAGLYEICSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK 118
           G I MP +T+  G+ E      G  + + VS A+GA G + GQ     GC  VVG  G+ 
Sbjct: 137 GAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH 196

Query: 119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKR 148
           EK  LL ++ GFD A NYK++ ++   L+ 
Sbjct: 197 EKCILLTSELGFDAAINYKKD-NVAEQLRE 225

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 31 VLLKNLYLSCDPYMQKRMSKLD 52
          V ++ LYLS DPYM+ RM++  
Sbjct: 45 VQVRTLYLSVDPYMRCRMNEDT 66

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  113 bits (286), Expect = 9e-31
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
            +++   TA+  L E+    +G+ V V+AA+G  GQ   Q +K A CHV+G+  S EK  
Sbjct: 143 TLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA 202

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKR 148
            LK   G D   NYK E  +   LK+
Sbjct: 203 FLK-SLGCDRPINYKTE-PVGTVLKQ 226

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA   L++    K G+YV + AA+G +G ++  +A+  G  V+G+  ++EK +  + K G
Sbjct: 132 TAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLG 190

Query: 130 FDDAFNYKEE 139
                NY  +
Sbjct: 191 CHHTINYSTQ 200

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA +   E    KKG+YV + AA+G VG ++ Q  K+ G H +  A + EK+ + K ++G
Sbjct: 135 TALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYG 193

Query: 130 FDDAFNYKEE 139
            +   N  +E
Sbjct: 194 AEYLINASKE 203

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 70.7 bits (174), Expect = 6e-15
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           T    L +    K GE +   AA+G VG L  Q+AK  G  ++G+  S EK    K   G
Sbjct: 127 TVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALG 185

Query: 130 FDDAFNYKEE 139
             +  +Y  E
Sbjct: 186 AWETIDYSHE 195

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 70.0 bits (172), Expect = 9e-15
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           T +  L +    K  E     AA+G VG +  Q+AK  G  ++G+ G+ +K      K G
Sbjct: 127 TVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAG 185

Query: 130 FDDAFNYKEE 139
                NY+EE
Sbjct: 186 AWQVINYREE 195

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA+    E  + ++ + + V+A   A+G L  Q +++    ++    + +  + L  + G
Sbjct: 131 TAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RLG 189

Query: 130 FDDAFNYKEEPDLDVALKR 148
                +      L   +  
Sbjct: 190 AAYVIDTSTA-PLYETVME 207

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA A +++I   +  +   ++A +  + +L+   AK  G   + +    E++ LLK   G
Sbjct: 152 TAIA-MFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DIG 209

Query: 130 FDDAFNYKEEPDLDVALKR 148
                N K   D +  L+ 
Sbjct: 210 AAHVLNEKAP-DFEATLRE 227

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TAF  L+ + + + G+YV + A    VG    Q  ++AG   + +AGS++K+ + + K G
Sbjct: 149 TAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KLG 207

Query: 130 FDDAFNYKEE 139
               FNYK+E
Sbjct: 208 AAAGFNYKKE 217

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           T +A L+++    +GE V +   +  +G    Q A+  G  V  +AGS  K +  + + G
Sbjct: 154 TVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLG 212

Query: 130 FDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEY 161
                NY+ E D    +K      V    D +G  Y
Sbjct: 213 AKRGINYRSE-DFAAVIKAETGQGVDIILDMIGAAY 247

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 64.9 bits (159), Expect = 5e-13
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
            + +P  TA+  L      K GE V V  ASG VG    Q A+  G  ++G+AG++E   
Sbjct: 150 AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK 209

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKR 148
           ++  + G  + FN++E  +    +K+
Sbjct: 210 IVL-QNGAHEVFNHREV-NYIDKIKK 233

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           +TA+  L E    + G+ V V    G V     Q AK  G  V+ ++ S+EK+D      
Sbjct: 175 LTAWFALVEKGHLRAGDRVVVQGTGG-VALFGLQIAKATGAEVIVTSSSREKLDRAF-AL 232

Query: 129 GFDDAFNYKEEPDLDVALKRM 149
           G D   N   E D    +  +
Sbjct: 233 GADHGINRL-EEDWVERVYAL 252

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 8/115 (6%)

Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
              +  +TA  G+ E    +    +  +AA+  +GQ++ Q     G  +V     +E+ D
Sbjct: 152 SSFVNPLTAL-GMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQAD 210

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKRM-----FLCWVDFVGIEYCRSLLLVLLFR 172
           LLK   G     N          L             D  G       +L  +  
Sbjct: 211 LLK-AQGAVHVCNAASP-TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEA 263

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 62.9 bits (153), Expect = 4e-12
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 69  VTAFAGLYEICSP--KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN 126
            TA+  L        K+G+ V +  ASG +G    QF K  G   V    S +K   ++ 
Sbjct: 204 GTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR- 262

Query: 127 KFGFDDAFNYKEEPDLDVALK 147
             G D   N  E    D    
Sbjct: 263 ALGCDLVINRAELGITDDIAD 283

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN--- 126
           TA+  L +    + G+ V  +A++  VGQ V Q A   G   +     +  +  L +   
Sbjct: 154 TAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK 213

Query: 127 KFGFDDAFNYKEE 139
             G +     +E 
Sbjct: 214 SLGAEHVITEEEL 226

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           +TA+  + +    + G+ V V AA   V     Q AKL G  V+ +AGS++K+   K   
Sbjct: 152 LTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL 210

Query: 129 GFDDAFNYKEEPDLDVALKRM 149
           G D+  NY   PD    ++R+
Sbjct: 211 GADETVNYT-HPDWPKEVRRL 230

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           +TA   L      K+G+ V + A +G VG L  Q AK  G  V+ +A SK     LK   
Sbjct: 139 LTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLK-AL 195

Query: 129 GFDDAFNYKEEP-------DLDVALKRMFLCWVDFVGIEYCRSLLLVL 169
           G +   NY EE         +D  +        D VG +     +  L
Sbjct: 196 GAEQCINYHEEDFLLAISTPVDAVI--------DLVGGDVGIQSIDCL 235

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 69  VTAFAGLYEICS--PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN 126
            TA+  L        K+G+ V +  ASG +G    QFA   G + +    S +K ++ + 
Sbjct: 212 STAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR- 270

Query: 127 KFGFDDAFNYKEEP 140
             G +   +   E 
Sbjct: 271 AMGAEAIIDRNAEG 284

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 69  VTAFAGLYEI----CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL 124
           +TA++ + ++         G+ V +  ASG VG    Q  K    HV     S++  +L+
Sbjct: 165 LTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV 223

Query: 125 KNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           + K G DD  +YK      V  +   L   DF+
Sbjct: 224 R-KLGADDVIDYKSG---SVEEQLKSLKPFDFI 252

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           TA+ GL +    + G+ V +    G VG +  Q A   G  V  +A     ++ ++   G
Sbjct: 137 TAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATA-RGSDLEYVR-DLG 194

Query: 130 FDDAFNYKEEPD----------LDVALKRMFLCWVDFVGIEY-CRSL 165
                  +E  D           D+          D +G      S 
Sbjct: 195 ATPIDASREPEDYAAEHTAGQGFDLVY--------DTLGGPVLDASF 233

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 14/83 (16%)

Query: 69  VTAFAGLYEI------------CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG 116
            TA   +  +             +  K  YV V   S A   +  Q  +L+G   + +  
Sbjct: 138 STAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC- 196

Query: 117 SKEKVDLLKNKFGFDDAFNYKEE 139
           S    DL K   G ++ F+Y+  
Sbjct: 197 SPHNFDLAK-SRGAEEVFDYRAP 218

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG 129
           T +         + GE V V  A+G +G    Q AK  G  V+         + +K   G
Sbjct: 146 TMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SVG 204

Query: 130 FDDAFNYKEEPDLDVALKR 148
            D     +E      A++ 
Sbjct: 205 ADIVLPLEE--GWAKAVRE 221

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           VTA+  L+E+ + ++G  V V +A G VGQ V Q         V    S  K + +K+  
Sbjct: 128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKD-- 185

Query: 129 GFDDAFNYKEEPDLDVALKR 148
                F+     D    +KR
Sbjct: 186 SVTHLFDRNA--DYVQEVKR 203

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 73  AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD 132
            G+    +  +G+ + +   +G VG +  Q AK  G  V+ +A   E ++  K K G D 
Sbjct: 140 FGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KMGADI 198

Query: 133 AFNYKEEPDLDVALKRMFLCWVDFV 157
             N+KE   L    K   +  VD+V
Sbjct: 199 VLNHKE--SLLNQFKTQGIELVDYV 221

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 66  MPSV--TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
                 TA+  L E+     GE V + +A+G VG      AK+ G  +  +AGS  K ++
Sbjct: 19  FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM 78

Query: 124 LKNKFGFDDAFN 135
           L  + G +   +
Sbjct: 79  LS-RLGVEYVGD 89

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 69  VTAFAGLYEICSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK----EKVDL 123
           +TA+  L        G+ +   +  + AVG+   Q  KL   + +     +    E V  
Sbjct: 152 LTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVAS 211

Query: 124 LKNKFGFDDAFNYKEEPDLDVA 145
           LK + G        +    +  
Sbjct: 212 LK-ELGATQVITEDQNNSREFG 232

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 82  KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEE 139
           + GE V V AA+GA+G    Q A+  G  V+ +A   EK+ L     G ++A  Y E 
Sbjct: 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAEV 180

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 68  SVTAFAGLYEI-----CSPKKGEYVYVSAASGAVGQLVGQFAK-LAGCHVVGSAGSKEKV 121
           S+TA+   ++        P     + +   +G VG +  Q A+      V+ +A   E  
Sbjct: 151 SITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ 210

Query: 122 DLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           + +K   G     ++ +   L   +  + L    FV
Sbjct: 211 EWVK-SLGAHHVIDHSK--PLAAEVAALGLGAPAFV 243

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 70   TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF- 128
            TA+  L      + GE V + + SG VGQ     A   GC V  + GS EK   L+ +F 
Sbjct: 1654 TAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFP 1713

Query: 129  GFDDA 133
              D+ 
Sbjct: 1714 QLDET 1718

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 66  MPSV--TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL 123
           +P V  TA+  L ++   + GE + V +A+G VG    Q A+  G  V  +A   +   +
Sbjct: 326 VPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQAV 385

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 14/106 (13%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
            P +TA+    E     K   V +    GAV  L+ Q    AG  V     +     L  
Sbjct: 126 CPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDL-VSASLSQALAA 182

Query: 126 NKFGFDDAFNYKEE--PDLDVALKRMFLCWVDFVGIEYCRSLLLVL 169
            K G    +    +                 D V  +   +L+  L
Sbjct: 183 -KRGVRHLYREPSQVTQKYFAIF--------DAVNSQNAAALVPSL 219

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAK-LAGCHVVGSAGSKEKVDLLKNK 127
           +T +  + +  S    + + V  A G +G +  Q AK ++G  ++G    +E V+  K +
Sbjct: 157 ITTYRAVRKA-SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-R 214

Query: 128 FGFDDAFNYKEE 139
            G D   N   +
Sbjct: 215 AGADYVINASMQ 226

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 82  KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD 141
             G +V +S A+G +G L  Q+AK  G  V+G  G + K +L +   G +   ++ +E D
Sbjct: 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDFTKEKD 226

Query: 142 LDVALKRMFLCWVDFV 157
           +  A+ +        V
Sbjct: 227 IVGAVLKATDGGAHGV 242

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 70  TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF 128
           TA+    E      G+ V +  A G +G      A+  G  +V+  AGS  ++ L + + 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI 239

Query: 129 GFDDAFNYKEEPDLDVA 145
           G D   N +E    +  
Sbjct: 240 GADLTLNRRETSVEERR 256

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
           VT + GL      + G++V +S   G +G +  Q+A+  G  V        K++L + + 
Sbjct: 153 VTVYKGLKV-TDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RL 209

Query: 129 GFDDAFNYKEEPD 141
           G + A N ++   
Sbjct: 210 GAEVAVNARDTDP 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.93
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.93
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.93
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.92
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.92
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.92
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.92
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.92
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.92
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.92
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.92
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.92
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.92
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.91
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.91
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.91
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.91
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.91
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.91
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.91
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.91
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.91
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.91
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.91
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.9
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.9
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.9
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.9
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.9
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.9
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.9
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.9
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.9
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.9
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.9
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.9
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.9
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.89
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.89
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.89
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.89
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.89
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.89
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.89
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.88
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.88
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.88
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.88
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.88
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.88
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.88
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.88
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.87
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.87
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.86
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.86
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.86
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.86
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.85
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.85
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.85
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.85
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.84
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.84
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.84
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.84
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.78
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.73
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.67
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.61
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.49
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.45
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.3
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.21
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.08
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.07
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.96
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.93
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.92
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.89
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.88
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.87
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.87
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.87
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.86
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.85
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.84
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.82
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.81
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.81
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.8
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.79
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.78
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.78
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.77
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.77
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.77
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.76
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.75
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.75
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.73
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.72
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.71
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.71
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.7
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.7
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.7
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.7
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.7
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.69
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.68
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.67
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.67
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.67
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.66
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.65
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.65
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.64
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.64
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.64
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.63
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.63
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.63
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.63
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.63
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.63
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.62
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.62
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.62
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.62
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.6
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.6
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.6
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.6
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.59
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.59
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.59
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.59
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.58
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.58
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.57
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.56
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.56
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.55
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.55
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.55
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.55
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.54
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.54
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.53
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.53
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.53
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.53
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.53
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.53
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.52
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.52
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.52
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.52
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.52
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.52
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.52
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.51
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.51
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.5
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.5
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.5
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.5
1spx_A	278	Short-chain reductase family member (5L265); paral	97.49
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.49
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.49
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.49
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.49
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.48
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.48
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.48
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.47
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.47
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.47
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.46
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.46
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.46
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.46
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.45
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.45
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.45
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.45
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.45
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.44
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.44
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.43
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.43
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.42
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.42
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.41
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.41
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.4
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.38
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.38
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.38
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.38
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.37
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.36
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.35
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.35
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.35
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.35
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.34
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.34
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.34
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.33
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.33
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.32
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.32
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.31
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.3
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.3
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.3
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.3
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.29
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.28
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.28
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.27
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.26
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.26
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.26
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.25
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.25
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.24
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.23
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.23
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.23
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.22
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.22
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.22
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.21
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.21
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.21
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.2
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.2
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.19
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.19
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.19
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.19
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.19
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.18
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.16
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.16
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.15
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.15
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.14
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.14
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.14
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.13
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.13
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.12
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.12
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.11
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.1
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.1
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.1
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.1
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.09
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.09
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.09
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.08
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.07
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.07
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.06
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.06
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.05
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.05
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.05
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.04
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.03
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.02
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.02
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.01
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.01
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.01
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.01
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.0
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.0
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.99
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.98
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.98
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.97
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.97
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.95
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.95
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.94
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.94
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.94
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.94
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.93
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.93
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.93
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.93
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.91
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.9
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.9
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.89
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.89
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.89
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.88
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.88
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.88
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.88
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.86
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.84
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.84
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.83
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.83
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.83
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.82
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.81
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.8
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.78
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.78
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.78
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.78
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.77
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.76
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.72
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.72
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.71
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.71
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.7
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.69
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.67
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.65
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.63
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.62
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.62
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.62
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.61
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.6
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.57
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.56
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.56
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.56
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.55
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.55
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.55
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.54
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.54
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.54
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.54
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.53
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.52
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.52
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.49
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.47
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.47
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.46
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.46
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.45
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.45
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.45
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.43
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.42
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.42
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.39
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.37
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.37
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.37
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.36
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.35
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.34
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.33
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.33
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.32
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.3
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.29
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.29
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.27
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.25
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.23
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.22
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.2
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.2
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.2
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.18
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.18
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.18
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.18
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.16
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.16
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.14
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.13
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.13
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.12
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.12
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.12
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.1
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.09
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	96.08
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.05
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.04
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.02
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.02
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.02
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.01
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.97
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.97
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.96
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	95.95
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	95.95
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.94
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.94
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.93
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.92
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.91
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.91
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.86
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.86
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	95.86
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.86
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.85
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	95.84
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.83
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.81
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	95.77
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.77
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.74
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.73
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.72
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	95.72
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.68
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.68
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.67
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.65
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	95.65
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.65
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.63
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.63
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.62
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	95.59
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.57
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.56
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	95.55
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.55
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.53
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.49
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	95.47
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.47
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.45
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.44
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.44
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.42
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.41
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.35
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.3
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.29
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.28
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	95.26
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	95.22
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.21
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.21
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.2
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.19
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.18
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.17
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.17
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.16
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.16
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.15
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.14
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.14
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	95.12
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.11
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.1
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	95.07
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.06
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.03
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.02
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.02
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.02
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.02
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.02
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	95.01
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.0
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.99
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	94.98
2i7c_A	283	Spermidine synthase; transferase, structural genom	94.96
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.96
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.94
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.92

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.93  E-value=5.1e-26  Score=186.26  Aligned_cols=162  Identities=19%  Similarity=0.191  Sum_probs=138.4

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG   84 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g   84 (192)
                      |++|.+|+|.+...+|...+|+++||++++...+.       .+|+..     ++..+..+++++|||+++ +.+++++|
T Consensus       117 C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~-------~~P~~~-----~~~~aal~~~~~ta~~~l-~~~~~~~g  183 (370)
T 4ej6_A          117 CQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAF-------EIPLTL-----DPVHGAFCEPLACCLHGV-DLSGIKAG  183 (370)
T ss_dssp             HHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEE-------EECTTS-----CTTGGGGHHHHHHHHHHH-HHHTCCTT
T ss_pred             HhCcCcccCCCccccCCCCCCcceEEEEEchhhEE-------ECCCCC-----CHHHHhhhhHHHHHHHHH-HhcCCCCC
Confidence            78999999999999999999999999999976665       333321     122222367999999999 78899999


Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh---hccCCc----cc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR---MFLCWV----DF  156 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~---~~~~g~----d~  156 (192)
                      ++|||+|+ |++|++++|+||++|+ +|++++++++|+++++ ++|++.++|++++ ++.+.+++   .+++|+    |+
T Consensus       184 ~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~-~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          184 STVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAE-EVGATATVDPSAG-DVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEECTTSS-CHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEECCCCc-CHHHHHHhhhhccCCCCCEEEEC
Confidence            99999995 9999999999999999 9999999999999999 9999999999888 89999988   665555    89


Q ss_pred             cc-HHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          157 VG-IEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       157 ~g-~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +| ...++.++++++++|+ +.+|..++
T Consensus       261 ~G~~~~~~~~~~~l~~~G~vv~~G~~~~  288 (370)
T 4ej6_A          261 AGVAETVKQSTRLAKAGGTVVILGVLPQ  288 (370)
T ss_dssp             SCCHHHHHHHHHHEEEEEEEEECSCCCT
T ss_pred             CCCHHHHHHHHHHhccCCEEEEEeccCC
Confidence            99 5799999999999995 57787665

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.93  E-value=3.7e-26  Score=189.09  Aligned_cols=177  Identities=17%  Similarity=0.173  Sum_probs=142.5

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH-hCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI-CSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~-~~~~   82 (192)
                      .|++|.+|+|.+....|...+|+++||++++...+..-|........     ..+...+..+++++|||+++... ++++
T Consensus       138 ~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~-----~~~~~aa~l~~~~~ta~~al~~~~~~~~  212 (404)
T 3ip1_A          138 PCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEG-----DRLFLAGSLVEPTSVAYNAVIVRGGGIR  212 (404)
T ss_dssp             HHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCT-----HHHHHHHHTHHHHHHHHHHHTTTSCCCC
T ss_pred             HHHCcCcccCccccccCCCCCCCCcceEEechHHeEecccccccccc-----ccchhHHhhhhHHHHHHHHHHHhccCCC
Confidence            48899999999999999999999999999998766633321110000     00111222267999999999644 4899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DF  156 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~  156 (192)
                      +|++|||+|+ |++|++++|+||++|+ +|++++++++|+++++ ++|+++++|++++ ++.+.+++.+++ |+    |+
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-~~~~~i~~~t~g~g~D~vid~  289 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAK-ELGADHVIDPTKE-NFVEAVLDYTNGLGAKLFLEA  289 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEECTTTS-CHHHHHHHHTTTCCCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEEcCCCC-CHHHHHHHHhCCCCCCEEEEC
Confidence            9999999995 9999999999999999 9999999999999999 9999999999888 999999999876 66    89


Q ss_pred             ccHH--HHHHHHHhh----cCCCe-EEEeeCCCCCcccc
Q 029543          157 VGIE--YCRSLLLVL----LFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       157 ~g~~--~~~~~~~~l----~~~G~-v~~G~~~~~~~~~~  188 (192)
                      +|+.  .++.+++++    +++|+ +.+|..+++.++++
T Consensus       290 ~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~  328 (404)
T 3ip1_A          290 TGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTG  328 (404)
T ss_dssp             SSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECH
T ss_pred             CCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccH
Confidence            9976  777777888    99995 68888776655554

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.93  E-value=1.5e-24  Score=174.62  Aligned_cols=168  Identities=23%  Similarity=0.240  Sum_probs=139.6

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC--------------------CCcccccCCCCC---------
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD--------------------TSLFYSFCPGGV---------   64 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~--------------------~~~~~~~~~g~~---------   64 (192)
                      ..+++...+.|...+++|+|++.++++|+.+.....+..                    ++....|.+|+.         
T Consensus        14 ~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G   93 (325)
T 3jyn_A           14 EVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLG   93 (325)
T ss_dssp             GGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESSSSSC
T ss_pred             ceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEecCCCc
Confidence            456666778888899999999999999997654332211                    122233444443         


Q ss_pred             ----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           65 ----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        65 ----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                                                  +++++|+|+++.+.+++++|++|||+||+|++|++++|+++..|++|+++++
T Consensus        94 ~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~  173 (325)
T 3jyn_A           94 AYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS  173 (325)
T ss_dssp             CSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             cccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence                                        5678899999987889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          117 SKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       117 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      +++|++.++ ++|+++++|++++ ++.+.+++.+++ ++    |++|++.++.++++++++|+ +.+|..+++
T Consensus       174 ~~~~~~~~~-~~Ga~~~~~~~~~-~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  244 (325)
T 3jyn_A          174 SPEKAAHAK-ALGAWETIDYSHE-DVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGP  244 (325)
T ss_dssp             SHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCC
T ss_pred             CHHHHHHHH-HcCCCEEEeCCCc-cHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCC
Confidence            999999999 9999999999888 899999998876 65    89999999999999999995 678877655

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.93  E-value=1.2e-25  Score=182.52  Aligned_cols=168  Identities=20%  Similarity=0.147  Sum_probs=128.7

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .|++|++|+|++.+.+|...+|+++||++++...+..       +|+..     ++..+....+++|||+++ +.+++ +
T Consensus       102 ~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~-------iP~~~-----~~~~aa~~~~~~ta~~~l-~~~~~-~  167 (348)
T 2d8a_A          102 ACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWK-------NPKSI-----PPEYATLQEPLGNAVDTV-LAGPI-S  167 (348)
T ss_dssp             ------------CEETTTSSCCSSBSEEEEEGGGEEE-------CCTTS-----CHHHHTTHHHHHHHHHHH-TTSCC-T
T ss_pred             hhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEE-------CCCCC-----CHHHHHhhhHHHHHHHHH-HhcCC-C
Confidence            4789999999999989988899999999999876653       33221     111122245888999999 77889 9


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFV  157 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~  157 (192)
                      |++|||+|+ |++|++++|+||++|+ +|+++++++++++.++ ++|+++++|++++ ++.+.+++.+++ ++    |++
T Consensus       168 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~-~~~~~v~~~~~g~g~D~vid~~  244 (348)
T 2d8a_A          168 GKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVGADYVINPFEE-DVVKEVMDITDGNGVDVFLEFS  244 (348)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHTCSEEECTTTS-CHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEECCCCc-CHHHHHHHHcCCCCCCEEEECC
Confidence            999999997 9999999999999999 9999999999999999 9999999999887 899999888765 55    899


Q ss_pred             cH-HHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          158 GI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       158 g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      |. +.++.++++++++|+ +.+|...++.++++
T Consensus       245 g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  277 (348)
T 2d8a_A          245 GAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDF  277 (348)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCH
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEccCCCCcccCc
Confidence            86 789999999999995 57787665555554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.92  E-value=6.4e-25  Score=178.50  Aligned_cols=169  Identities=15%  Similarity=0.127  Sum_probs=135.3

Q ss_pred             ccccchhhhhhhhcccccc-CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQN-AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~-~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|++|+|++....|.. .+|+++||++++...+..       +|+..     ++..+...++++|||+++ +.++++
T Consensus       101 ~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~-------iP~~~-----~~~~aa~~~~~~ta~~al-~~~~~~  167 (352)
T 1e3j_A          101 FCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHK-------LPDNV-----SLEEGALLEPLSVGVHAC-RRAGVQ  167 (352)
T ss_dssp             HHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEE-------CCTTS-----CHHHHHTHHHHHHHHHHH-HHHTCC
T ss_pred             hhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEE-------CcCCC-----CHHHHHhhchHHHHHHHH-HhcCCC
Confidence            3789999999999888874 589999999999876653       23221     111111245889999999 788999


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-cccHHHHHHhhcc---C-Cc---
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKE-EPDLDVALKRMFL---C-WV---  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~i~~~~~---~-g~---  154 (192)
                      +|++|||+| +|++|++++|+||++|++|++++++++|+++++ ++|+++++|+++ + ++.+.+++.++   + ++   
T Consensus       168 ~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~~-~~~~~i~~~~~~~~g~g~D~v  244 (352)
T 1e3j_A          168 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDPAK-EEESSIIERIRSAIGDLPNVT  244 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEECCTTT-SCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCcccc-cHHHHHHHHhccccCCCCCEE
Confidence            999999999 599999999999999999999999999999999 999999999885 5 77777877664   2 45   


Q ss_pred             -ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          155 -DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       155 -d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                       |++|+. .++.++++++++|+ +.+|....+.++++
T Consensus       245 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  281 (352)
T 1e3j_A          245 IDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPL  281 (352)
T ss_dssp             EECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCH
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccH
Confidence             899864 78999999999995 57776544444443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.92  E-value=3.1e-25  Score=179.54  Aligned_cols=168  Identities=17%  Similarity=0.209  Sum_probs=137.5

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .|+.|.+|+|.+....|+..+|+++||++++...+..-|......      ...++     ++++.|||+++ +..++++
T Consensus        99 ~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~------~aa~l-----~~~~~ta~~~l-~~~~~~~  166 (340)
T 3s2e_A           99 HCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFV------EIAPI-----LCAGVTVYKGL-KVTDTRP  166 (340)
T ss_dssp             HHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHH------HHGGG-----GTHHHHHHHHH-HTTTCCT
T ss_pred             HHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHH------Hhhcc-----cchhHHHHHHH-HHcCCCC
Confidence            378999999999999999999999999999876655333211000      01122     66899999999 6779999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc-
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG-  158 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g-  158 (192)
                      |++|||+| +|++|++++|+||++|++|++++++++|+++++ ++|+++++|++++ ++.+.+++..+ ++    |++| 
T Consensus       167 g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~i~~~~~-~~~~~~~~~~g-~~d~vid~~g~  242 (340)
T 3s2e_A          167 GQWVVISG-IGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RLGAEVAVNARDT-DPAAWLQKEIG-GAHGVLVTAVS  242 (340)
T ss_dssp             TSEEEEEC-CSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEETTTS-CHHHHHHHHHS-SEEEEEESSCC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCCEEEeCCCc-CHHHHHHHhCC-CCCEEEEeCCC
Confidence            99999999 599999999999999999999999999999999 9999999999987 88888887333 44    8887 


Q ss_pred             HHHHHHHHHhhcCCCe-EEEeeCCCCCccc
Q 029543          159 IEYCRSLLLVLLFRPL-KIMENDSGSTPIP  187 (192)
Q Consensus       159 ~~~~~~~~~~l~~~G~-v~~G~~~~~~~~~  187 (192)
                      .+.++.++++++++|+ +.+|...++.+++
T Consensus       243 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  272 (340)
T 3s2e_A          243 PKAFSQAIGMVRRGGTIALNGLPPGDFGTP  272 (340)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSCCSSEEEEE
T ss_pred             HHHHHHHHHHhccCCEEEEeCCCCCCCCCC
Confidence            6799999999999995 5778766544443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.92  E-value=6.3e-25  Score=178.81  Aligned_cols=169  Identities=15%  Similarity=0.119  Sum_probs=134.8

Q ss_pred             ccccchhhhhhhhcccccc-CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQN-AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~-~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|.+|+|++....|.. .+|+++||++++...+..       +|+..     ++..+...++++|||+++ +.++++
T Consensus       104 ~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~-------iP~~l-----~~~~aa~~~~~~ta~~al-~~~~~~  170 (356)
T 1pl8_A          104 FCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYK-------LPDNV-----TFEEGALIEPLSVGIHAC-RRGGVT  170 (356)
T ss_dssp             HHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEE-------CCTTS-----CHHHHHHHHHHHHHHHHH-HHHTCC
T ss_pred             HHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEE-------CcCCC-----CHHHHHhhchHHHHHHHH-HhcCCC
Confidence            3789999999999888873 589999999999876652       23221     111111145889999999 788999


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC---CcccHHHHHHhhccCCc----
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK---EEPDLDVALKRMFLCWV----  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~---~~~~~~~~i~~~~~~g~----  154 (192)
                      +|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|++   ++ ++.+.+++.++.++    
T Consensus       171 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~~~~-~~~~~i~~~~~~g~D~vi  247 (356)
T 1pl8_A          171 LGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQISKESPQ-EIARKVEGQLGCKPEVTI  247 (356)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECSSCCHH-HHHHHHHHHHTSCCSEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEcCcccccc-hHHHHHHHHhCCCCCEEE
Confidence            999999999 69999999999999999 9999999999999999 99999999987   34 77778877764444    


Q ss_pred             ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          155 DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       155 d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      |++|+. .++.++++++++|+ +.+|....+.++++
T Consensus       248 d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  283 (356)
T 1pl8_A          248 ECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPL  283 (356)
T ss_dssp             ECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCH
T ss_pred             ECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCH
Confidence            899864 88999999999995 57786544444443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.92  E-value=2e-24  Score=174.97  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=135.5

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .|+.|.+++|.+...+|...+|+++||++++..++..       +|+..     ++..+....+++++++++ +..++++
T Consensus        94 ~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~-------iP~~l-----~~~~aa~l~~~~~~~~~~-~~~~~~~  160 (346)
T 4a2c_A           94 ECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFA-------LPTDM-----PIEDGAFIEPITVGLHAF-HLAQGCE  160 (346)
T ss_dssp             HHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEE-------CCTTS-----CGGGGGGHHHHHHHHHHH-HHTTCCT
T ss_pred             cccCCccccCCCcccccCCCCcccccccccchheEEE-------CCCCC-----CHHHHHhchHHHHHHHHH-HHhccCC
Confidence            3788999999999999999999999999999887763       33321     122222244566666666 7789999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFV  157 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~  157 (192)
                      |++|+|+| +|++|++++|+||++|+ .+++++++++|+++++ ++|+++++|++++ ++.+.+++.+.+ ++    |++
T Consensus       161 g~~VlV~G-aG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~-~lGa~~~i~~~~~-~~~~~~~~~~~~~g~d~v~d~~  237 (346)
T 4a2c_A          161 NKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK-SFGAMQTFNSSEM-SAPQMQSVLRELRFNQLILETA  237 (346)
T ss_dssp             TSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEETTTS-CHHHHHHHHGGGCSSEEEEECS
T ss_pred             CCEEEEEC-CCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH-HcCCeEEEeCCCC-CHHHHHHhhcccCCcccccccc
Confidence            99999999 69999999999999999 6789999999999999 9999999999988 888888887765 55    899


Q ss_pred             c-HHHHHHHHHhhcCCCe-EEEeeCCCCC
Q 029543          158 G-IEYCRSLLLVLLFRPL-KIMENDSGST  184 (192)
Q Consensus       158 g-~~~~~~~~~~l~~~G~-v~~G~~~~~~  184 (192)
                      | ...++.++++++++|+ +++|...++.
T Consensus       238 G~~~~~~~~~~~l~~~G~~v~~g~~~~~~  266 (346)
T 4a2c_A          238 GVPQTVELAVEIAGPHAQLALVGTLHQDL  266 (346)
T ss_dssp             CSHHHHHHHHHHCCTTCEEEECCCCSSCE
T ss_pred             cccchhhhhhheecCCeEEEEEeccCCCc
Confidence            8 5689999999999995 5778776653

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.92  E-value=6.4e-24  Score=172.72  Aligned_cols=168  Identities=20%  Similarity=0.250  Sum_probs=139.0

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC--------
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV--------   64 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~--------   64 (192)
                      ..+++...+.|.+.+++|+|++.++++||.+.....+..                     ++....|.+|+.        
T Consensus        41 ~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~G  120 (353)
T 4dup_A           41 DVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLANGG  120 (353)
T ss_dssp             GGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEECSSC
T ss_pred             cceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCCCCCCCCCCEEEEecCCC
Confidence            345566677888889999999999999997654332211                     122233444443        


Q ss_pred             ----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           65 ----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        65 ----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                                                  +++++|||+++.+.+++++|++|||+||+|++|++++|+++..|++|+++++
T Consensus       121 ~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~  200 (353)
T 4dup_A          121 AYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG  200 (353)
T ss_dssp             CSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence                                        6789999999978889999999999998999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          117 SKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       117 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      ++++++.++ ++|++.++|++++ ++.+.+++.++.++    |++|++.++.++++++++|+ +.+|..++.
T Consensus       201 ~~~~~~~~~-~lGa~~~~~~~~~-~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  270 (353)
T 4dup_A          201 STGKCEACE-RLGAKRGINYRSE-DFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGA  270 (353)
T ss_dssp             SHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHHSSCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCTTCS
T ss_pred             CHHHHHHHH-hcCCCEEEeCCch-HHHHHHHHHhCCCceEEEECCCHHHHHHHHHHhccCCEEEEEEecCCC
Confidence            999999999 9999999999988 89999988874355    89999999999999999995 577876554

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.92  E-value=5.5e-25  Score=178.30  Aligned_cols=166  Identities=25%  Similarity=0.275  Sum_probs=137.9

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCC-CchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGG-VIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~-~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|++|+|++....|...+|+++||++++...+..       +|+..     ++..+. .+++++|||+++.+.++++
T Consensus        98 ~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~-------~P~~~-----~~~~aa~l~~~~~ta~~al~~~~~~~  165 (343)
T 2eih_A           98 RCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAP-------KPKNL-----SFEEAAAIPLTFLTAWQMVVDKLGVR  165 (343)
T ss_dssp             HHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEE-------CCTTS-----CHHHHHHSHHHHHHHHHHHTTTSCCC
T ss_pred             hhccCcccccccccccCcCCCccceeEEEeChHHeEE-------CCCCC-----CHHHHhhchhhHHHHHHHHHHhcCCC
Confidence            3789999999999988888899999999999866552       22221     111111 2679999999996657899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFV  157 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~  157 (192)
                      +|++|||+||+|++|++++|+++..|++|+++++++++++.++ ++|++.++|++++ ++.+.+++.+.+ ++    |++
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~ga~~~~d~~~~-~~~~~~~~~~~~~~~d~vi~~~  243 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYTHP-DWPKEVRRLTGGKGADKVVDHT  243 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETTST-THHHHHHHHTTTTCEEEEEESS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEcCCcc-cHHHHHHHHhCCCCceEEEECC
Confidence            9999999998899999999999999999999999999999999 9999999999877 888888887754 55    899


Q ss_pred             cHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          158 GIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       158 g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      |++.++.++++++++|+ +.+|..+++
T Consensus       244 g~~~~~~~~~~l~~~G~~v~~g~~~~~  270 (343)
T 2eih_A          244 GALYFEGVIKATANGGRIAIAGASSGY  270 (343)
T ss_dssp             CSSSHHHHHHHEEEEEEEEESSCCCSC
T ss_pred             CHHHHHHHHHhhccCCEEEEEecCCCC
Confidence            97799999999999995 577876554

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.92  E-value=5.8e-24  Score=172.36  Aligned_cols=182  Identities=15%  Similarity=0.130  Sum_probs=140.8

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC-------------------CCcccccCC
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD-------------------TSLFYSFCP   61 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~-------------------~~~~~~~~~   61 (192)
                      ||+.+......  ...++...+.|.+.++|||||+.++++||.+...+.+..                   ++.+..|.+
T Consensus         1 MKA~v~~~~~~--~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~~~p~i~GhE~aG~V~~vG~~V~~~~~   78 (348)
T 4eez_A            1 MKAAVVRHNPD--GYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQV   78 (348)
T ss_dssp             CEEEEECSSCC--SSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCCCTTCBCCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEcCCC--CcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCCCCCcccceeEEEEEEEECceeeeccc
Confidence            88876543221  234566778888899999999999999997654332211                   122223333


Q ss_pred             CCC----------------------------------------------------------------chhHHHHHHHHHH
Q 029543           62 GGV----------------------------------------------------------------IMPSVTAFAGLYE   77 (192)
Q Consensus        62 g~~----------------------------------------------------------------~~~~~ta~~~l~~   77 (192)
                      |+.                                                                +++++|+|+++ +
T Consensus        79 GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~  157 (348)
T 4eez_A           79 GDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAI-K  157 (348)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHH-H
T ss_pred             CCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeee-c
Confidence            332                                                                56788999999 6


Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc-
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV-  154 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~-  154 (192)
                      ..++++|++|+|+| +|++|.+++|+++.+ |++|++++++++|++.++ ++|+++++|++++ ++.+++++.+++ |+ 
T Consensus       158 ~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~-~~Ga~~~i~~~~~-~~~~~v~~~t~g~g~d  234 (348)
T 4eez_A          158 VSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK-KIGADVTINSGDV-NPVDEIKKITGGLGVQ  234 (348)
T ss_dssp             HHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH-HTTCSEEEEC-CC-CHHHHHHHHTTSSCEE
T ss_pred             ccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh-hcCCeEEEeCCCC-CHHHHhhhhcCCCCce
Confidence            78999999999999 699999999999976 559999999999999999 9999999999988 999999999887 66 


Q ss_pred             ---cccc-HHHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          155 ---DFVG-IEYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       155 ---d~~g-~~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                         |+++ ..++..++++++++|+ +.+|......++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  273 (348)
T 4eez_A          235 SAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSV  273 (348)
T ss_dssp             EEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECH
T ss_pred             EEEEeccCcchhheeheeecCCceEEEEeccCCCCccCH
Confidence               5555 6789999999999995 57777665555544

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.92  E-value=9.1e-24  Score=170.51  Aligned_cols=172  Identities=24%  Similarity=0.298  Sum_probs=138.3

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC-------------------CCcccccCCCCC-----------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD-------------------TSLFYSFCPGGV-----------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~-------------------~~~~~~~~~g~~-----------   64 (192)
                      .+++...+.|...+++|+|++.++++||.+.....+..                   ++....|.+|+.           
T Consensus        22 ~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~G~~ae  101 (334)
T 3qwb_A           22 VIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEKPYVLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQ  101 (334)
T ss_dssp             GEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCCCSSEECCSEEEEEEEEECTTCCSCCTTCEEEEECSSCSBS
T ss_pred             eeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCccccceEEEEEEECCCCCCCCCCCEEEEeeCCcceE
Confidence            35555667788899999999999999996653322110                   122233444443           


Q ss_pred             ----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           65 ----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        65 ----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                                                  +++++|||+++.+..++++|++|||+||+|++|++++|+++..|++|+++++
T Consensus       102 y~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~  181 (334)
T 3qwb_A          102 YSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS  181 (334)
T ss_dssp             EEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence                                        3456789999977779999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCCC-cccc
Q 029543          117 SKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGST-PIPF  188 (192)
Q Consensus       117 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~~-~~~~  188 (192)
                      +++|++.++ ++|++.++|++++ ++.+.+++.+++ ++    |++|+..++.++++++++|+ +.+|..++.. ++++
T Consensus       182 ~~~~~~~~~-~~ga~~~~~~~~~-~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  258 (334)
T 3qwb_A          182 TDEKLKIAK-EYGAEYLINASKE-DILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSI  258 (334)
T ss_dssp             SHHHHHHHH-HTTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCTTCCCCCBCG
T ss_pred             CHHHHHHHH-HcCCcEEEeCCCc-hHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCCCCCCCCcch
Confidence            999999999 9999999999888 999999988865 65    89999999999999999995 6888776543 4444

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.92  E-value=6.4e-24  Score=172.06  Aligned_cols=165  Identities=16%  Similarity=0.063  Sum_probs=132.6

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC---------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV---------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~---------   64 (192)
                      .+++...+.|...+++|+|++.++++||.+.....+..                     ++... |.+|+.         
T Consensus        35 ~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~~~G~  113 (342)
T 4eye_A           35 GLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAFNFIGG  113 (342)
T ss_dssp             GEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEECSSCC
T ss_pred             eeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEecCCCc
Confidence            35556677888889999999999999997654332211                     12222 555554         


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                                                 +++++|||+++.+.+++++|++|||+||+|++|++++|++++.|++|++++++
T Consensus       114 ~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~  193 (342)
T 4eye_A          114 YAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR  193 (342)
T ss_dssp             SBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence                                       78899999999888899999999999988999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          118 KEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       118 ~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      +++++.++ ++|++.++|++ + ++.+.+++.+++ ++    |++|++.++.++++++++|+ +.+|...+.
T Consensus       194 ~~~~~~~~-~~ga~~v~~~~-~-~~~~~v~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~  262 (342)
T 4eye_A          194 TAATEFVK-SVGADIVLPLE-E-GWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGG  262 (342)
T ss_dssp             GGGHHHHH-HHTCSEEEESS-T-THHHHHHHHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC------
T ss_pred             HHHHHHHH-hcCCcEEecCc-h-hHHHHHHHHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccCCC
Confidence            99999999 99999999998 6 899999998876 66    89999999999999999995 577876543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.92  E-value=7.6e-25  Score=178.69  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=135.0

Q ss_pred             ccccchhhhhhhhcccccc-CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQN-AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~-~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|.+|+|.+....|.. .+|+++||++++...+..-|. .            ++..+...++++|||+++ +.++++
T Consensus       113 ~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~------------s~~~aa~~~~~~ta~~~l-~~~~~~  178 (363)
T 3m6i_A          113 PCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-M------------SYENGAMLEPLSVALAGL-QRAGVR  178 (363)
T ss_dssp             HHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-C------------CHHHHHHHHHHHHHHHHH-HHHTCC
T ss_pred             HHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-C------------CHHHHHhhhHHHHHHHHH-HHcCCC
Confidence            3789999999999988874 789999999999876663332 1            111111145889999999 788999


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCCeeeecC----CcccHHHHHHhhccC-Cc--
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFGFDDAFNYK----EEPDLDVALKRMFLC-WV--  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g~~~vi~~~----~~~~~~~~i~~~~~~-g~--  154 (192)
                      +|++|||+|+ |++|++++|+||++|++ |++++++++|+++++ ++ ++.++++.    +.+++.+.+++.+++ |+  
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv  255 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAV  255 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-chhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence            9999999995 99999999999999995 999999999999999 88 77776653    122788899988865 66  


Q ss_pred             --ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          155 --DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       155 --d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                        |++|++ .++.++++++++|+ +.+|...+..++++
T Consensus       256 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  293 (363)
T 3m6i_A          256 ALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPF  293 (363)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCH
T ss_pred             EEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccH
Confidence              899976 88999999999995 57887666555554

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.91  E-value=3.6e-25  Score=179.38  Aligned_cols=168  Identities=19%  Similarity=0.225  Sum_probs=137.1

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .|++|++|+|++.+..|...+|+++||++++...+.       .+|+..     ++..+...++++|||+++.+.+++ +
T Consensus        98 ~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~-------~iP~~~-----~~~~aa~~~~~~ta~~~l~~~~~~-~  164 (343)
T 2dq4_A           98 ACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAW-------VNPKDL-----PFEVAAILEPFGNAVHTVYAGSGV-S  164 (343)
T ss_dssp             HHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEE-------EECTTS-----CHHHHTTHHHHHHHHHHHHSTTCC-T
T ss_pred             hhhCcCcccCCCcceecCCCCCcceeEEEEchHHeE-------ECCCCC-----CHHHHHhhhHHHHHHHHHHHhCCC-C
Confidence            378999999999998888889999999999986655       233221     111112245888999999547889 9


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG  158 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g  158 (192)
                      |++|||+|| |++|++++|+||++|+ +|+++++++++++.++ ++ +++++|++++ ++.+.+++.++.++    |++|
T Consensus       165 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a~~v~~~~~~-~~~~~~~~~~~~g~D~vid~~g  240 (343)
T 2dq4_A          165 GKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-ADRLVNPLEE-DLLEVVRRVTGSGVEVLLEFSG  240 (343)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-CSEEECTTTS-CHHHHHHHHHSSCEEEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-HHhccCcCcc-CHHHHHHHhcCCCCCEEEECCC
Confidence            999999997 9999999999999999 9999999999999999 89 9999999887 89888888773355    8999


Q ss_pred             H-HHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          159 I-EYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       159 ~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      + +.++.++++++++|+ +.+|...++.++++
T Consensus       241 ~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  272 (343)
T 2dq4_A          241 NEAAIHQGLMALIPGGEARILGIPSDPIRFDL  272 (343)
T ss_dssp             CHHHHHHHHHHEEEEEEEEECCCCSSCEEECH
T ss_pred             CHHHHHHHHHHHhcCCEEEEEecCCCCceeCc
Confidence            6 789999999999995 57787655544544

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=8e-25  Score=179.73  Aligned_cols=168  Identities=15%  Similarity=0.177  Sum_probs=136.4

Q ss_pred             cc-cchhhhhhhhccccc--------cCCCCCCCeEEE-EEEEeeeChhhhhhhcccCCCcccccC-CCCCchhHHHHHH
Q 029543            5 IR-NTSKRLCKIQNILKQ--------NAAEGSKDTVLL-KNLYLSCDPYMQKRMSKLDTSLFYSFC-PGGVIMPSVTAFA   73 (192)
Q Consensus         5 ~~-~g~~~~C~~~~~~g~--------~~~g~~~~~vlv-~~~~~~v~p~~~~~~~~~~~~~~~~~~-~g~~~~~~~ta~~   73 (192)
                      |+ +|.+|+|++....|.        ..+|+++||+++ +...+.       .+|+..     ++. .+...++++|||+
T Consensus       118 C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~-------~iP~~l-----~~~~~Aa~~~~~~ta~~  185 (380)
T 1vj0_A          118 CKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVL-------KVSEKD-----DLDVLAMAMCSGATAYH  185 (380)
T ss_dssp             HHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEE-------EECTTS-----CHHHHHHHTTHHHHHHH
T ss_pred             HhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEE-------ECCCCC-----ChHHhHhhhcHHHHHHH
Confidence            45 899999999887776        568999999999 876665       233321     111 1112458999999


Q ss_pred             HHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC---CcccHHHHHHh
Q 029543           74 GLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK---EEPDLDVALKR  148 (192)
Q Consensus        74 ~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~---~~~~~~~~i~~  148 (192)
                      ++ +..+ +++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|++   ++ ++.+.+++
T Consensus       186 al-~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~-~~~~~v~~  261 (380)
T 1vj0_A          186 AF-DEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTLNRRETSVE-ERRKAIMD  261 (380)
T ss_dssp             HH-HTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEEETTTSCHH-HHHHHHHH
T ss_pred             HH-HhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HcCCcEEEeccccCcc-hHHHHHHH
Confidence            99 6678 99999999999 89999999999999995 9999999999999999 99999999987   55 88888988


Q ss_pred             hccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCC-C-CCcccc
Q 029543          149 MFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDS-G-STPIPF  188 (192)
Q Consensus       149 ~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~-~-~~~~~~  188 (192)
                      .+++ ++    |++|+ ..++.++++++++|+ +.+|..+ + +.++++
T Consensus       262 ~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  310 (380)
T 1vj0_A          262 ITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKV  310 (380)
T ss_dssp             HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECH
T ss_pred             HhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEch
Confidence            8865 65    89986 689999999999995 6788766 4 444543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=9.3e-25  Score=178.04  Aligned_cols=170  Identities=18%  Similarity=0.177  Sum_probs=134.3

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH-hCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI-CSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~-~~~~   82 (192)
                      .|++|.+|+|++....|...+|+++||++++...+..-|...   +........++     ++++.|||+++.+. ++++
T Consensus       114 ~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~---~~~~aa~~~~l-----~~~~~ta~~al~~~~~~~~  185 (359)
T 1h2b_A          114 ACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDI---SREKLVEMAPL-----ADAGITAYRAVKKAARTLY  185 (359)
T ss_dssp             HHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTC---CHHHHHHTGGG-----GTHHHHHHHHHHHHHTTCC
T ss_pred             hhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCC---CHHHHhhccch-----hhhHHHHHHHHHhhccCCC
Confidence            378999999999999998889999999999987665333211   10000000123     56889999999654 8999


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----cc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DF  156 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~  156 (192)
                      +|++|||+|| |++|++++|+||++ |++|++++++++|+++++ ++|+++++|++++  +.+.+++.+++ ++    |+
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~--~~~~v~~~~~g~g~Dvvid~  261 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHVVDARRD--PVKQVMELTRGRGVNVAMDF  261 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSEEEETTSC--HHHHHHHHTTTCCEEEEEES
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCCEEEeccch--HHHHHHHHhCCCCCcEEEEC
Confidence            9999999996 99999999999999 999999999999999999 9999999998763  77788888765 55    89


Q ss_pred             ccHH---HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          157 VGIE---YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       157 ~g~~---~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      +|+.   .++.++++  ++|+ +.+|...++ ++++
T Consensus       262 ~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~  294 (359)
T 1h2b_A          262 VGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPT  294 (359)
T ss_dssp             SCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCH
T ss_pred             CCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCH
Confidence            9976   78888888  8885 677876554 4443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.91  E-value=2e-23  Score=168.96  Aligned_cols=165  Identities=14%  Similarity=0.128  Sum_probs=136.6

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC----------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV----------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~----------   64 (192)
                      +++...+.|...+++|+|++.++++||.+...+.+..                     ++.+..|.+|+.          
T Consensus        20 l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~G~~   99 (340)
T 3gms_A           20 LQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRGEGTW   99 (340)
T ss_dssp             EEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEECSSSCSS
T ss_pred             EEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEecCCCccc
Confidence            5566677888889999999999999997664433211                     122223334433          


Q ss_pred             --------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           65 --------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        65 --------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                                                ++.++|||+++.+.+++++|++|||+||+|++|++++|+++..|++|+++++++
T Consensus       100 aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  179 (340)
T 3gms_A          100 QEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN  179 (340)
T ss_dssp             BSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             eeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence                                      578899999998889999999999999888999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          119 EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       119 ~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++++.++ ++|+++++|++++ ++.+.+++.+++ ++    |++|+..+..++++++++|+ +.+|..++
T Consensus       180 ~~~~~~~-~lga~~~~~~~~~-~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~  247 (340)
T 3gms_A          180 KHTEELL-RLGAAYVIDTSTA-PLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSG  247 (340)
T ss_dssp             TTHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTS
T ss_pred             HHHHHHH-hCCCcEEEeCCcc-cHHHHHHHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecCC
Confidence            9999999 9999999999887 899999998876 66    89998888888899999995 67887654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.91  E-value=1.6e-24  Score=175.36  Aligned_cols=166  Identities=22%  Similarity=0.202  Sum_probs=135.7

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |++|++|+|.+....|...+|+++||++++...+..-|       +..+. ....+     ++++.|||+++. ..++++
T Consensus        98 C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P-------~~~~~~~aa~l-----~~~~~ta~~~l~-~~~~~~  164 (339)
T 1rjw_A           98 CLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIP-------DNLSFEEAAPI-----FCAGVTTYKALK-VTGAKP  164 (339)
T ss_dssp             HHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECC-------TTSCHHHHGGG-----GTHHHHHHHHHH-HHTCCT
T ss_pred             hhCcCcccCCCcceeecCCCCcceeeEEechHHEEECC-------CCCCHHHhhhh-----hhhHHHHHHHHH-hcCCCC
Confidence            78899999999999998889999999999977665323       22100 01112     568899999995 458999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGI  159 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~  159 (192)
                      |++|||+|| |++|++++|+|+.+|++|+++++++++++.++ ++|++.++|++++ ++.+.+++.+ +++    |++|.
T Consensus       165 g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~d~~~~-~~~~~~~~~~-~~~d~vid~~g~  240 (339)
T 1rjw_A          165 GEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLKE-DAAKFMKEKV-GGVHAAVVTAVS  240 (339)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECTTTS-CHHHHHHHHH-SSEEEEEESSCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEecCCCc-cHHHHHHHHh-CCCCEEEECCCC
Confidence            999999996 89999999999999999999999999999999 9999999998877 8888888776 344    89995


Q ss_pred             -HHHHHHHHhhcCCCe-EEEeeCCCCCccc
Q 029543          160 -EYCRSLLLVLLFRPL-KIMENDSGSTPIP  187 (192)
Q Consensus       160 -~~~~~~~~~l~~~G~-v~~G~~~~~~~~~  187 (192)
                       ..++.++++++++|+ +.+|..+++.+++
T Consensus       241 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  270 (339)
T 1rjw_A          241 KPAFQSAYNSIRRGGACVLVGLPPEEMPIP  270 (339)
T ss_dssp             HHHHHHHHHHEEEEEEEEECCCCSSEEEEE
T ss_pred             HHHHHHHHHHhhcCCEEEEecccCCCCccC
Confidence             799999999999995 5778766544443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.91  E-value=2.1e-23  Score=168.42  Aligned_cols=165  Identities=38%  Similarity=0.550  Sum_probs=135.5

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC---------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV---------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~---------   64 (192)
                      .+++...+.|.+.+++|+|++.++++||.++..+....                     .+....|.+|+.         
T Consensus        25 ~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~~~p~~~G~e~g~~~~G~V~~~~v~~~~vGdrV~~~G~~ae  104 (336)
T 4b7c_A           25 TFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSYIPPVGIGEVMRALGVGKVLVSKHPGFQAGDYVNGALGVQD  104 (336)
T ss_dssp             SEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCSSCCCCTTSBCCCEEEEEEEEECSTTCCTTCEEEEECCSBS
T ss_pred             ceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccccCCCCCCCcccCCceEEEEEecCCCCCCCCCEEeccCCceE
Confidence            44566677888899999999999999997654432210                     001122333332         


Q ss_pred             --------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           65 --------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        65 --------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                                                +++++|||+++.+.+++++|++|||+||+|++|++++|+++..|++|+++++++
T Consensus       105 y~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  184 (336)
T 4b7c_A          105 YFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA  184 (336)
T ss_dssp             EEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence                                      567899999998888999999999999889999999999999999999999999


Q ss_pred             HHHHHH-HHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          119 EKVDLL-KNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       119 ~~~~~~-~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++++.+ + ++|++.++|++++ ++.+.+++.+++++    |++|++.++.++++++++|+ +.+|..+
T Consensus       185 ~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          185 EKCRFLVE-ELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HHHHHHHH-TTCCSEEEETTTS-CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHHHHHH-HcCCCEEEECCCH-HHHHHHHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecc
Confidence            999999 6 9999999999887 89999988875555    89999999999999999995 5777655

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.91  E-value=2.5e-24  Score=175.73  Aligned_cols=169  Identities=20%  Similarity=0.114  Sum_probs=136.1

Q ss_pred             cccchhhhhhh---hcc-ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhC
Q 029543            5 IRNTSKRLCKI---QNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICS   80 (192)
Q Consensus         5 ~~~g~~~~C~~---~~~-~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~   80 (192)
                      |+.|. ++|.+   ... .|...+|+++||++++...+..-|......      ....+     +++++|||+++.+.++
T Consensus       119 c~~g~-~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~------~aa~l-----~~~~~ta~~al~~~~~  186 (363)
T 3uog_A          119 WLDGL-RPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAA------EASTL-----PCAGLTAWFALVEKGH  186 (363)
T ss_dssp             CCSSS-CCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHH------HHHTT-----TTHHHHHHHHHTTTTC
T ss_pred             ccccc-cccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHH------HHhhc-----ccHHHHHHHHHHHhcC
Confidence            67777 88973   333 677889999999999987666333211100      00112     5689999999977889


Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----c
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----D  155 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d  155 (192)
                      +++|++|||+| +|++|++++|+||++|++|++++++++|+++++ ++|+++++|..++ ++.+.+++.+++ ++    |
T Consensus       187 ~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-~~~~~v~~~~~g~g~D~vid  263 (363)
T 3uog_A          187 LRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-ALGADHGINRLEE-DWVERVYALTGDRGADHILE  263 (363)
T ss_dssp             CCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH-HcCCCEEEcCCcc-cHHHHHHHHhCCCCceEEEE
Confidence            99999999999 899999999999999999999999999999999 9999999995556 899999998876 66    8


Q ss_pred             cccHHHHHHHHHhhcCCCe-EEEeeCCCC-Ccccc
Q 029543          156 FVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPF  188 (192)
Q Consensus       156 ~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~  188 (192)
                      ++|++.++.++++++++|+ +.+|...+. .++++
T Consensus       264 ~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  298 (363)
T 3uog_A          264 IAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGPV  298 (363)
T ss_dssp             ETTSSCHHHHHHHEEEEEEEEEECCCSSCEECCBT
T ss_pred             CCChHHHHHHHHHhhcCCEEEEEecCCCcccCcCH
Confidence            9998899999999999995 678877653 34443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=6.1e-24  Score=173.86  Aligned_cols=164  Identities=15%  Similarity=0.024  Sum_probs=132.3

Q ss_pred             ccccchhhhhhhhccccc-----------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccC
Q 029543            4 SIRNTSKRLCKIQNILKQ-----------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFC   60 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~-----------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~   60 (192)
                      .|++|++|+|++.+..++                       ..+|+++||++++...+.       .+|+..     ++.
T Consensus        99 ~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~-------~iP~~~-----~~~  166 (371)
T 1f8f_A           99 QCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTV-------KVTKDV-----PIE  166 (371)
T ss_dssp             HHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEE-------EECTTS-----CGG
T ss_pred             hhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheE-------ECCCCC-----CHH
Confidence            388999999998753211                       136899999999987665       233321     111


Q ss_pred             CC-CCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 029543           61 PG-GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE  138 (192)
Q Consensus        61 ~g-~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~  138 (192)
                      .+ ..++++.|||+++.+.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+++
T Consensus       167 ~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~  244 (371)
T 1f8f_A          167 LLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVINSKT  244 (371)
T ss_dssp             GTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHTCSEEEETTT
T ss_pred             HHHHhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCCEEecCCc
Confidence            11 12569999999997788999999999999 69999999999999999 7999999999999999 999999999988


Q ss_pred             cccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          139 EPDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       139 ~~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      + ++.+.+++.+++++    |++|+ +.++.++++++++|+ +.+|...+
T Consensus       245 ~-~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~  293 (371)
T 1f8f_A          245 Q-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQL  293 (371)
T ss_dssp             S-CHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCST
T ss_pred             c-CHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCC
Confidence            7 88888988876555    89985 689999999999995 57787653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.91  E-value=1.1e-23  Score=171.13  Aligned_cols=118  Identities=20%  Similarity=0.152  Sum_probs=105.8

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +++++|||+++ +.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|++++ ++.
T Consensus       149 ~~~~~ta~~al-~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-~~~  224 (352)
T 3fpc_A          149 PDMMTTGFHGA-ELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL-EYGATDIINYKNG-DIV  224 (352)
T ss_dssp             TTHHHHHHHHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH-HHTCCEEECGGGS-CHH
T ss_pred             cchhHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCceEEcCCCc-CHH
Confidence            47899999999 788999999999999 69999999999999999 8999999999999999 9999999999887 999


Q ss_pred             HHHHhhccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCcc
Q 029543          144 VALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPI  186 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~  186 (192)
                      +.+++.+++ ++    |++|+ +.++.++++++++|+ +.+|..++..++
T Consensus       225 ~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~  274 (352)
T 3fpc_A          225 EQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNI  274 (352)
T ss_dssp             HHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEE
T ss_pred             HHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCce
Confidence            999999876 66    89997 689999999999995 678876654433

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.91  E-value=2.2e-24  Score=174.83  Aligned_cols=169  Identities=12%  Similarity=0.162  Sum_probs=134.1

Q ss_pred             ccccchhhhh-hhhcc----ccccCCCCCCCeEEEE-EEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHH
Q 029543            4 SIRNTSKRLC-KIQNI----LKQNAAEGSKDTVLLK-NLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYE   77 (192)
Q Consensus         4 ~~~~g~~~~C-~~~~~----~g~~~~g~~~~~vlv~-~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~   77 (192)
                      .|++|++|+| .+...    .|...+|+++||++++ ...+..-|. ....      ...++     +++++|||+++.+
T Consensus        97 ~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~------~aa~l-----~~~~~ta~~~l~~  164 (345)
T 3jv7_A           97 ACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPV------AAAPL-----TDAGLTPYHAISR  164 (345)
T ss_dssp             HHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHH------HHGGG-----GTTTHHHHHHHHT
T ss_pred             HHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHH------Hhhhh-----hhhHHHHHHHHHH
Confidence            3788999999 55554    6777899999999998 655443222 1100      11122     6689999999965


Q ss_pred             -HhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc
Q 029543           78 -ICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV  154 (192)
Q Consensus        78 -~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~  154 (192)
                       ..++++|++|+|+|+ |++|++++|+||++ |++|++++++++|+++++ ++|+++++|+++  ++.+.+++.+++ ++
T Consensus       165 ~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~lGa~~~i~~~~--~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          165 VLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EVGADAAVKSGA--GAADAIRELTGGQGA  240 (345)
T ss_dssp             TGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HTTCSEEEECST--THHHHHHHHHGGGCE
T ss_pred             hccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEEcCCC--cHHHHHHHHhCCCCC
Confidence             348999999999995 99999999999999 569999999999999999 999999999864  688889888876 65


Q ss_pred             ----ccccHH-HHHHHHHhhcCCCe-EEEeeCCC-CCcccc
Q 029543          155 ----DFVGIE-YCRSLLLVLLFRPL-KIMENDSG-STPIPF  188 (192)
Q Consensus       155 ----d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~-~~~~~~  188 (192)
                          |++|++ .++.++++++++|+ +.+|...+ +.++++
T Consensus       241 d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  281 (345)
T 3jv7_A          241 TAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF  281 (345)
T ss_dssp             EEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST
T ss_pred             eEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH
Confidence                999976 99999999999995 57887766 444543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.91  E-value=1e-24  Score=177.70  Aligned_cols=165  Identities=10%  Similarity=0.084  Sum_probs=133.9

Q ss_pred             ccccchhhhhhhhccc--cc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhC
Q 029543            4 SIRNTSKRLCKIQNIL--KQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICS   80 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~--g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~   80 (192)
                      .|++|++|+|++.+..  |. ..+|+++||++++...+..-       |+...      ..+..+++++|||+++ +.++
T Consensus        98 ~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~i-------P~~~~------~~aal~~~~~ta~~al-~~~~  163 (357)
T 2b5w_A           98 YFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRI-------PRSQA------ELGFLIEPISITEKAL-EHAY  163 (357)
T ss_dssp             HHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEEC-------CGGGS------TTGGGHHHHHHHHHHH-HHHH
T ss_pred             HHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEEC-------CCCcc------hhhhhhchHHHHHHHH-HhcC
Confidence            3789999999998877  76 56899999999998766633       32211      1122367999999999 6788


Q ss_pred             CCCC------CEEEEeCCCchHHHHH-HHHH-HHcCCE-EEEEeCCHH---HHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           81 PKKG------EYVYVSAASGAVGQLV-GQFA-KLAGCH-VVGSAGSKE---KVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        81 ~~~g------~~VlV~Ga~G~iG~~~-~q~a-~~~Ga~-Vi~~~~~~~---~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      +++|      ++|||+|| |++|+++ +|+| |++|++ |++++++++   |+++++ ++|++++ |++++ ++.+ +++
T Consensus       164 ~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~-~lGa~~v-~~~~~-~~~~-i~~  238 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE-ELDATYV-DSRQT-PVED-VPD  238 (357)
T ss_dssp             HTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH-HTTCEEE-ETTTS-CGGG-HHH
T ss_pred             CCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH-HcCCccc-CCCcc-CHHH-HHH
Confidence            9999      99999996 9999999 9999 999995 999999998   999999 9999999 98877 7777 776


Q ss_pred             hccCCc----ccccHH-HHHHHHHhhcCCCe-EEEeeCC-CCCcccc
Q 029543          149 MFLCWV----DFVGIE-YCRSLLLVLLFRPL-KIMENDS-GSTPIPF  188 (192)
Q Consensus       149 ~~~~g~----d~~g~~-~~~~~~~~l~~~G~-v~~G~~~-~~~~~~~  188 (192)
                      . .+++    |++|+. .++.++++++++|+ +.+|..+ .+.++++
T Consensus       239 ~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~  284 (357)
T 2b5w_A          239 V-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDA  284 (357)
T ss_dssp             H-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCH
T ss_pred             h-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecH
Confidence            6 4455    899965 89999999999995 6788766 4444543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.91  E-value=1.1e-23  Score=172.36  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=131.1

Q ss_pred             cccchhhhhhhhccc---cc------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCC
Q 029543            5 IRNTSKRLCKIQNIL---KQ------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGG   63 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~---g~------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~   63 (192)
                      |++|++|+|.+.+..   |.                  ..+|+++||++++...+.       .+|+..     ++....
T Consensus       104 C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~-------~iP~~l-----~~~aa~  171 (373)
T 1p0f_A          104 CKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVA-------KIDPKA-----PLESCL  171 (373)
T ss_dssp             HHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEE-------EECTTC-----CGGGGG
T ss_pred             hcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEE-------ECCCCC-----Chhhhh
Confidence            789999999986532   22                  135899999999987665       233321     111111


Q ss_pred             CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC--cc
Q 029543           64 VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE--EP  140 (192)
Q Consensus        64 ~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~--~~  140 (192)
                      .++++.|||+++.+.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+++  + 
T Consensus       172 l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~~~-  248 (373)
T 1p0f_A          172 IGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELGATECLNPKDYDK-  248 (373)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSS-
T ss_pred             hhhHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCcEEEecccccc-
Confidence            2568999999987788999999999999 69999999999999999 8999999999999999 999999999874  4 


Q ss_pred             cHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCC
Q 029543          141 DLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSG  182 (192)
Q Consensus       141 ~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~  182 (192)
                      ++.+.+++.+++++    |++|. +.++.++++++++ |+ +.+|....
T Consensus       249 ~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~  297 (373)
T 1p0f_A          249 PIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP  297 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCC
Confidence            78888888876555    89985 6899999999999 95 57787654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.90  E-value=7.6e-24  Score=173.72  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=131.7

Q ss_pred             ccccchhhhhhhhcc---cccc-------------------CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCC
Q 029543            4 SIRNTSKRLCKIQNI---LKQN-------------------AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCP   61 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~---~g~~-------------------~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~   61 (192)
                      .|++|++|+|++.+.   .|..                   -+|+++||++++...+..-|...   +..   ....+  
T Consensus       103 ~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~---~~~---~aa~l--  174 (378)
T 3uko_A          103 FCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTA---PLD---KVCLL--  174 (378)
T ss_dssp             HHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTS---CHH---HHGGG--
T ss_pred             hhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEECCCCC---CHH---Hhhhh--
Confidence            378999999998653   2211                   23699999999987665333211   000   00111  


Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC--C
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK--E  138 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~--~  138 (192)
                         ++++.|||+++.+.+++++|++|||+|+ |++|++++|+||++|+ +|++++++++|+++++ ++|+++++|++  +
T Consensus       175 ---~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~~  249 (378)
T 3uko_A          175 ---GCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK-KFGVNEFVNPKDHD  249 (378)
T ss_dssp             ---GTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH-TTTCCEEECGGGCS
T ss_pred             ---hhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCcEEEccccCc
Confidence               5689999999878889999999999995 9999999999999999 8999999999999999 99999999987  4


Q ss_pred             cccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCC
Q 029543          139 EPDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGS  183 (192)
Q Consensus       139 ~~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~  183 (192)
                      + ++.+.+++.+++++    |++|+ ..++.++++++++ |+ +.+|.....
T Consensus       250 ~-~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~  300 (378)
T 3uko_A          250 K-PIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG  300 (378)
T ss_dssp             S-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT
T ss_pred             h-hHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCC
Confidence            5 89999999887665    89996 6899999999996 95 578876543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.90  E-value=7e-24  Score=171.87  Aligned_cols=165  Identities=19%  Similarity=0.183  Sum_probs=129.4

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEE-EEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHH---
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLK-NLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEI---   78 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~-~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~---   78 (192)
                      .|++|++|+|.+...+|...+|+++||++++ ...+.       .+ +..+. ...++     ++++.|||+++.+.   
T Consensus        99 ~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~-------~i-~~l~~~~aa~l-----~~~~~ta~~al~~~~~~  165 (344)
T 2h6e_A           99 YCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLV-------KL-NSLSPVEAAPL-----ADAGTTSMGAIRQALPF  165 (344)
T ss_dssp             TGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEE-------EE-SSSCHHHHGGG-----GTHHHHHHHHHHHHHHH
T ss_pred             hhhCCCcccCCCccccccccCCcceeeEEecCcccEE-------Ee-CCCCHHHhhhh-----hhhhHHHHHHHHhhhhc
Confidence            4789999999999889988899999999998 65443       12 11000 01122     66899999999554   


Q ss_pred             -hCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCCeeeecCC-cccHHHHHHhhccC-C
Q 029543           79 -CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKE-EPDLDVALKRMFLC-W  153 (192)
Q Consensus        79 -~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~i~~~~~~-g  153 (192)
                       .++ +|++|||+|+ |++|++++|+||++  |++|++++++++|+++++ ++|+++++|+++ + ++.+   +.+.+ +
T Consensus       166 ~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~-~~~~---~~~~g~g  238 (344)
T 2h6e_A          166 ISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-ELGADYVSEMKDAE-SLIN---KLTDGLG  238 (344)
T ss_dssp             HTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHTCSEEECHHHHH-HHHH---HHHTTCC
T ss_pred             ccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-HhCCCEEeccccch-HHHH---HhhcCCC
Confidence             288 9999999996 99999999999999  999999999999999999 999999998765 4 4433   33433 4


Q ss_pred             c----ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          154 V----DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       154 ~----d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      +    |++|+. .++.++++++++|+ +.+|...++.++++
T Consensus       239 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  279 (344)
T 2h6e_A          239 ASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEA  279 (344)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCH
T ss_pred             ccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCH
Confidence            4    899976 99999999999995 57787655544543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.90  E-value=1.7e-22  Score=165.02  Aligned_cols=162  Identities=14%  Similarity=0.168  Sum_probs=128.8

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC--------------------CCcccccCCCCC----------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD--------------------TSLFYSFCPGGV----------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~--------------------~~~~~~~~~g~~----------   64 (192)
                      .++....+.|...+++|+|++.++++||.+...+.+..                    ++.+..|.+|+.          
T Consensus        39 ~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~  118 (363)
T 4dvj_A           39 SLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRP  118 (363)
T ss_dssp             SSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSC
T ss_pred             eEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCC
Confidence            34455667788889999999999999997654332210                    222233444443          


Q ss_pred             -----------------------------chhHHHHHHHHHHHhCCC-----CCCEEEEeCCCchHHHHHHHHHHHc-CC
Q 029543           65 -----------------------------IMPSVTAFAGLYEICSPK-----KGEYVYVSAASGAVGQLVGQFAKLA-GC  109 (192)
Q Consensus        65 -----------------------------~~~~~ta~~~l~~~~~~~-----~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga  109 (192)
                                                   +++++|||+++.+..+++     +|++|||+||+|++|++++|+||++ |+
T Consensus       119 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~  198 (363)
T 4dvj_A          119 GTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL  198 (363)
T ss_dssp             CSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS
T ss_pred             ccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC
Confidence                                         556789999997788888     8999999999999999999999984 88


Q ss_pred             EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHH-HHHHHHHhhcCCCe-EEEee
Q 029543          110 HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIE-YCRSLLLVLLFRPL-KIMEN  179 (192)
Q Consensus       110 ~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~-~~~~~~~~l~~~G~-v~~G~  179 (192)
                      +|++++++++|+++++ ++|+++++|+++  ++.+.+++..++++    |++|+. .++.++++++++|+ +.+|.
T Consensus       199 ~Vi~~~~~~~~~~~~~-~lGad~vi~~~~--~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          199 TVIATASRPETQEWVK-SLGAHHVIDHSK--PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             EEEEECSSHHHHHHHH-HTTCSEEECTTS--CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC
T ss_pred             EEEEEeCCHHHHHHHH-HcCCCEEEeCCC--CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECC
Confidence            9999999999999999 999999999864  68888887744455    899965 88999999999995 56653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.90  E-value=1.3e-23  Score=176.28  Aligned_cols=166  Identities=19%  Similarity=0.169  Sum_probs=134.0

Q ss_pred             cccchhhhhhhhccccccC-CCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHH--hCC
Q 029543            5 IRNTSKRLCKIQNILKQNA-AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEI--CSP   81 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~-~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~--~~~   81 (192)
                      +..+..++|++.+..|+.. +|+++||++++..++..-|       +.......    ...+++++|||+++...  +++
T Consensus       158 ~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P-------~~l~~~~a----a~l~~~~~ta~~al~~~~~~~~  226 (456)
T 3krt_A          158 DGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKP-------DHLSWEEA----AAPGLVNSTAYRQLVSRNGAGM  226 (456)
T ss_dssp             GGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECC-------TTSCHHHH----HSSHHHHHHHHHHHTSTTTTCC
T ss_pred             ccccccccCccccccccCCCCCcccceEEechHHeeECC-------CCCCHHHH----HHhhhHHHHHHHHHHhhcccCC
Confidence            4567889999999999876 4999999999987766333       22100000    01155889999999644  789


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc-----------------HHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD-----------------LDV  144 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-----------------~~~  144 (192)
                      ++|++|+|+||+|++|++++|+||++|++|++++++++|+++++ ++|++.++|+.++ +                 +.+
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-d~~~~~~~~~~~~~~~~~~~~  304 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR-AMGAEAIIDRNAE-GYRFWKDENTQDPKEWKRFGK  304 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCCEEEETTTT-TCCSEEETTEECHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-hhCCcEEEecCcC-cccccccccccchHHHHHHHH
Confidence            99999999998899999999999999999999999999999999 9999999998765 3                 347


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      .+++.+++ ++    |++|++.+..++++++++|+ +.+|..++.
T Consensus       305 ~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~  349 (456)
T 3krt_A          305 RIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGY  349 (456)
T ss_dssp             HHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTCS
T ss_pred             HHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCCc
Confidence            78888775 65    89999999999999999995 577876553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.90  E-value=2.1e-22  Score=162.03  Aligned_cols=167  Identities=26%  Similarity=0.262  Sum_probs=134.0

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC--------------------CCcccccCCCCC----------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD--------------------TSLFYSFCPGGV----------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~--------------------~~~~~~~~~g~~----------   64 (192)
                      .+++...+.|...+++|+|++.++++||.+.....+..                    ++.+..|.+|+.          
T Consensus        15 ~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~g~~~G~   94 (327)
T 1qor_A           15 VLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGA   94 (327)
T ss_dssp             GCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCCSSCC
T ss_pred             heEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCCCCEEEECCCCCce
Confidence            34455667788889999999999999996643221110                    122222333321          


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                                                 +++++|||+++.+.+++++|++|+|+||+|++|++++|+++..|++|++++++
T Consensus        95 ~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~  174 (327)
T 1qor_A           95 YSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT  174 (327)
T ss_dssp             SBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             eeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence                                       57889999999767899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          118 KEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       118 ~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      +++++.++ ++|++.++|+.++ ++.+.+.+.+.+ ++    |++|.+.++.++++++++|+ +.+|..++.
T Consensus       175 ~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  244 (327)
T 1qor_A          175 AQKAQSAL-KAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA  244 (327)
T ss_dssp             HHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC
T ss_pred             HHHHHHHH-HcCCCEEEECCCc-cHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCC
Confidence            99999999 8999999999887 888888877654 55    89998899999999999995 577876553

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.90  E-value=1.6e-22  Score=165.48  Aligned_cols=164  Identities=16%  Similarity=0.130  Sum_probs=129.8

Q ss_pred             hhccc-cccCCCCCCCeEEEEEEEeeeChhhhhhhccc---------C--------CCcccccCCCCC------------
Q 029543           15 IQNIL-KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL---------D--------TSLFYSFCPGGV------------   64 (192)
Q Consensus        15 ~~~~~-g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~---------~--------~~~~~~~~~g~~------------   64 (192)
                      .+++. ..+.|...+++|+|++.++++||.+...+...         .        ++.+..|.+|+.            
T Consensus        22 ~l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~  101 (371)
T 3gqv_A           22 EVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRT  101 (371)
T ss_dssp             CEEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----CCTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTC
T ss_pred             ceEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcCCCCCccCccccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCC
Confidence            45565 67788888999999999999999766433110         0        222233444432            


Q ss_pred             --------------------------------chhHHHHHHHHHHH-hCC-----------CCCCEEEEeCCCchHHHHH
Q 029543           65 --------------------------------IMPSVTAFAGLYEI-CSP-----------KKGEYVYVSAASGAVGQLV  100 (192)
Q Consensus        65 --------------------------------~~~~~ta~~~l~~~-~~~-----------~~g~~VlV~Ga~G~iG~~~  100 (192)
                                                      +++++|||+++.+. .++           ++|++|||+||+|++|+++
T Consensus       102 ~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a  181 (371)
T 3gqv_A          102 PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVT  181 (371)
T ss_dssp             TTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHH
T ss_pred             CCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHH
Confidence                                            55678999999766 443           8999999999889999999


Q ss_pred             HHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccH-HHHHHHHHhh-cCCCe
Q 029543          101 GQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGI-EYCRSLLLVL-LFRPL  174 (192)
Q Consensus       101 ~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l-~~~G~  174 (192)
                      +|+||++|++|+++. +++|+++++ ++|+++++|++++ ++.+.+++.+++++    |++|+ ..++.+++++ +++|+
T Consensus       182 ~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~vi~~~~~-~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~  258 (371)
T 3gqv_A          182 MQMLRLSGYIPIATC-SPHNFDLAK-SRGAEEVFDYRAP-NLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGH  258 (371)
T ss_dssp             HHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEEEETTST-THHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEE
T ss_pred             HHHHHHCCCEEEEEe-CHHHHHHHH-HcCCcEEEECCCc-hHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCE
Confidence            999999999999987 799999999 9999999999988 99999999887655    99996 6899999999 58895


Q ss_pred             -EEEeeCC
Q 029543          175 -KIMENDS  181 (192)
Q Consensus       175 -v~~G~~~  181 (192)
                       +.+|..+
T Consensus       259 iv~~g~~~  266 (371)
T 3gqv_A          259 YVSLNPFP  266 (371)
T ss_dssp             EEESSCCC
T ss_pred             EEEEecCc
Confidence             5777544

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.90  E-value=1.7e-23  Score=171.51  Aligned_cols=169  Identities=14%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             cccchhhhhhhhc----c---cccc------------------CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCccccc
Q 029543            5 IRNTSKRLCKIQN----I---LKQN------------------AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSF   59 (192)
Q Consensus         5 ~~~g~~~~C~~~~----~---~g~~------------------~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~   59 (192)
                      |++|++|+|.+..    .   .|..                  .+|+++||++++...+..-|...   +..   ....+
T Consensus       103 C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l---~~~---~aa~l  176 (376)
T 1e3i_A          103 CLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEA---NLE---RVCLI  176 (376)
T ss_dssp             HHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTC---CHH---HHGGG
T ss_pred             ccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccEEECCCCC---CHH---Hhhhh
Confidence            7899999999854    1   1221                  35899999999987665322211   000   00111


Q ss_pred             CCCCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC
Q 029543           60 CPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE  138 (192)
Q Consensus        60 ~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~  138 (192)
                           ++++.|||+++.+.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+++
T Consensus       177 -----~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~  249 (376)
T 1e3i_A          177 -----GCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALGATDCLNPRE  249 (376)
T ss_dssp             -----GTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGGG
T ss_pred             -----ccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCcEEEcccc
Confidence                 568999999987788999999999999 69999999999999999 8999999999999999 999999999874


Q ss_pred             --cccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCCCccc
Q 029543          139 --EPDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGSTPIP  187 (192)
Q Consensus       139 --~~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~~~~~  187 (192)
                        + ++.+.+++.+++++    |++|+ +.++.++++++++ |+ +.+|....+.+++
T Consensus       250 ~~~-~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~  306 (376)
T 1e3i_A          250 LDK-PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP  306 (376)
T ss_dssp             CSS-CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEE
T ss_pred             ccc-hHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccC
Confidence              4 78888888776555    89985 6899999999999 95 5778743333333

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.90  E-value=1.4e-22  Score=165.38  Aligned_cols=164  Identities=24%  Similarity=0.305  Sum_probs=134.6

Q ss_pred             hcc-ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCccc-ccCCCCC--------
Q 029543           16 QNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFY-SFCPGGV--------   64 (192)
Q Consensus        16 ~~~-~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~-~~~~g~~--------   64 (192)
                      +++ ...+.|.+.+++|+|++.++++||.+.....+..                     ++.+. .|.+|+.        
T Consensus        40 l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~~~G~  119 (362)
T 2c0c_A           40 VTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPGS  119 (362)
T ss_dssp             EEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEECSCC
T ss_pred             eEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECCCccCCCCCCCEEEEccCCc
Confidence            445 5667788889999999999999996543322110                     22233 4555554        


Q ss_pred             -------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           65 -------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        65 -------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                                               +++++|||+++.+.+++++|++|||+||+|++|++++|+|+..|++|++++++++
T Consensus       120 ~aey~~v~~~~~~~~P~~~~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  199 (362)
T 2c0c_A          120 FAEYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDE  199 (362)
T ss_dssp             SBSEEEEEGGGCEECSSSCHHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             ceeEEEEcHHHeEECCCCchHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHH
Confidence                                     5689999999987789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          120 KVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       120 ~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +++.++ ++|++.++|++++ ++.+.+++.+++++    |++|+..++.++++++++|+ +.+|...
T Consensus       200 ~~~~~~-~~Ga~~~~~~~~~-~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~  264 (362)
T 2c0c_A          200 KSAFLK-SLGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS  264 (362)
T ss_dssp             HHHHHH-HTTCSEEEETTTS-CHHHHHHHHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGG
T ss_pred             HHHHHH-HcCCcEEEecCCh-hHHHHHHHhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            999999 9999999999887 88888887764455    89999999999999999995 5777654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.90  E-value=1.6e-22  Score=164.62  Aligned_cols=165  Identities=22%  Similarity=0.219  Sum_probs=135.2

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhccc----------C-----------CCcc-cccCCCCC---------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL----------D-----------TSLF-YSFCPGGV---------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~----------~-----------~~~~-~~~~~g~~---------   64 (192)
                      +++...+.|...+++|+|++.++++||.+.....+.          .           ++.+ ..|.+|+.         
T Consensus        37 l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~~~G~  116 (354)
T 2j8z_A           37 LYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGG  116 (354)
T ss_dssp             EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEECSSCC
T ss_pred             eEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEecCCCc
Confidence            445556678888999999999999999654322110          0           2233 44566654         


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                                                 +++++|||+++.+.+++++|++|+|+||+|++|++++|+++..|++|++++++
T Consensus       117 ~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~  196 (354)
T 2j8z_A          117 QAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGS  196 (354)
T ss_dssp             SBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence                                       57899999999777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          118 KEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       118 ~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +++++.++ ++|++.++|+.++ ++.+.+.+.+.+ ++    |++|+..++.++++++++|+ +.+|..++
T Consensus       197 ~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~  265 (354)
T 2j8z_A          197 QKKLQMAE-KLGAAAGFNYKKE-DFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGG  265 (354)
T ss_dssp             HHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCTTC
T ss_pred             HHHHHHHH-HcCCcEEEecCCh-HHHHHHHHHhcCCCceEEEECCCchHHHHHHHhccCCCEEEEEeccCC
Confidence            99999998 9999999999887 888888887764 55    89998899999999999995 57787654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.90  E-value=2.3e-22  Score=163.44  Aligned_cols=163  Identities=21%  Similarity=0.211  Sum_probs=131.9

Q ss_pred             hcc-ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC---------
Q 029543           16 QNI-LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV---------   64 (192)
Q Consensus        16 ~~~-~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~---------   64 (192)
                      +++ ...+.|.+.+++|+|++.++++||.+.....+..                     ++....|.+|+.         
T Consensus        44 l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G  123 (351)
T 1yb5_A           44 LKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISG  123 (351)
T ss_dssp             EEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCCSSC
T ss_pred             eEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeCCCCC
Confidence            344 4566777889999999999999996653322110                     122223444432         


Q ss_pred             ----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           65 ----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        65 ----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                                                  +++++|||+++.+.+++++|++|+|+||+|++|++++|+++..|++|+++++
T Consensus       124 ~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~  203 (351)
T 1yb5_A          124 GYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG  203 (351)
T ss_dssp             SSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence                                        5689999999976789999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          117 SKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       117 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ++++++.++ ++|++.++|+.++ ++.+.+.+.+.+ ++    |++|+..++.++++++++|+ +.+|..
T Consensus       204 ~~~~~~~~~-~~ga~~~~d~~~~-~~~~~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~  271 (351)
T 1yb5_A          204 TEEGQKIVL-QNGAHEVFNHREV-NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSR  271 (351)
T ss_dssp             SHHHHHHHH-HTTCSEEEETTST-THHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ChhHHHHHH-HcCCCEEEeCCCc-hHHHHHHHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEecC
Confidence            999999998 9999999999887 888888887764 55    89998899999999999995 577753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.90  E-value=1.3e-23  Score=170.50  Aligned_cols=168  Identities=18%  Similarity=0.175  Sum_probs=136.1

Q ss_pred             cccchhhhhhhhccccccCCCCCCCeEEEEE-EEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQNAAEGSKDTVLLKN-LYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~-~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |++|.+|+|++.+..|...+|+++||++++. ..+..-+    .++..   ...++     ++++.|||+++ +.+++++
T Consensus       104 C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i~----~~~~~---~aa~l-----~~~~~ta~~~l-~~~~~~~  170 (347)
T 1jvb_A          104 CRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLR----RLNAV---EAAPL-----TCSGITTYRAV-RKASLDP  170 (347)
T ss_dssp             HHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECS----SSCHH---HHGGG-----GTHHHHHHHHH-HHTTCCT
T ss_pred             hhCcCcccCcccccccccCCCcceeEEEecCccceEEeC----CCCHH---Hcccc-----hhhHHHHHHHH-HhcCCCC
Confidence            7899999999999999888999999999987 5544111    11110   11122     66889999999 5689999


Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhcc-CCc----ccc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFL-CWV----DFV  157 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~-~g~----d~~  157 (192)
                      |++|+|+|++|++|++++|+++.. |++|+++++++++++.++ ++|++.++|+.++ ++.+.+.+.+. +++    |++
T Consensus       171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~  248 (347)
T 1jvb_A          171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINASMQ-DPLAEIRRITESKGVDAVIDLN  248 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCEEecCCCc-cHHHHHHHHhcCCCceEEEECC
Confidence            999999998779999999999999 999999999999999998 9999999998887 88888887775 344    899


Q ss_pred             cHH-HHHHHHHhhcCCCe-EEEeeCC-CCCcccc
Q 029543          158 GIE-YCRSLLLVLLFRPL-KIMENDS-GSTPIPF  188 (192)
Q Consensus       158 g~~-~~~~~~~~l~~~G~-v~~G~~~-~~~~~~~  188 (192)
                      |+. .++.++++++++|+ +.+|... ++ ++++
T Consensus       249 g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~  281 (347)
T 1jvb_A          249 NSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHA  281 (347)
T ss_dssp             CCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCH
T ss_pred             CCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCH
Confidence            965 89999999999995 5778765 44 4443

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.90  E-value=8.9e-23  Score=165.38  Aligned_cols=161  Identities=15%  Similarity=0.116  Sum_probs=131.2

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC----------------------CCcccccCCCCC---------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD----------------------TSLFYSFCPGGV---------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~----------------------~~~~~~~~~g~~---------   64 (192)
                      +++...+.|.+.+++|+|++.++++||.+.....+..                      ++....|.+|+.         
T Consensus        20 l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~   99 (343)
T 3gaz_A           20 FVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVG   99 (343)
T ss_dssp             EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCSST
T ss_pred             eEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeCCCC
Confidence            5566678888899999999999999997653332210                      122233444433         


Q ss_pred             --------------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE
Q 029543           65 --------------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV  112 (192)
Q Consensus        65 --------------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi  112 (192)
                                                      +++++|||+++.+.+++++|++|||+||+|++|++++|+|+..|++|+
T Consensus       100 ~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi  179 (343)
T 3gaz_A          100 GLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVF  179 (343)
T ss_dssp             TCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence                                            567789999997888999999999999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++ ++++++++++ ++|++. +| .++ ++.+.+++.+.+ ++    |++|++.++.++++++++|+ +.+|...
T Consensus       180 ~~-~~~~~~~~~~-~lGa~~-i~-~~~-~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          180 AT-ARGSDLEYVR-DLGATP-ID-ASR-EPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             EE-ECHHHHHHHH-HHTSEE-EE-TTS-CHHHHHHHHHTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCCS
T ss_pred             EE-eCHHHHHHHH-HcCCCE-ec-cCC-CHHHHHHHHhcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEcccC
Confidence            99 7999999999 999998 88 656 888889888876 65    89999999999999999995 5677654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.90  E-value=2.6e-22  Score=162.76  Aligned_cols=162  Identities=21%  Similarity=0.279  Sum_probs=130.0

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC------------------CCcccccCCCCC------------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD------------------TSLFYSFCPGGV------------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~------------------~~~~~~~~~g~~------------   64 (192)
                      .+++...+.|...+++|+|++.++++||.+.....+..                  ++.+..|.+|+.            
T Consensus        19 ~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G~   98 (346)
T 3fbg_A           19 LFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGS   98 (346)
T ss_dssp             CCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCCSSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCS
T ss_pred             eeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCCCCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCcc
Confidence            45566678888899999999999999997754332210                  222233444443            


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCC------CCCEEEEeCCCchHHHHHHHHHHHcCCEE
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPK------KGEYVYVSAASGAVGQLVGQFAKLAGCHV  111 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~------~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~V  111 (192)
                                                 ++++.|||+++.+.++++      +|++|||+||+|++|++++|+||++|++|
T Consensus        99 ~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~V  178 (346)
T 3fbg_A           99 NAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRV  178 (346)
T ss_dssp             SBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEE
T ss_pred             eeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence                                       567789999998888888      89999999889999999999999999999


Q ss_pred             EEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHH-HHHHHHHhhcCCCeE-EEee
Q 029543          112 VGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIE-YCRSLLLVLLFRPLK-IMEN  179 (192)
Q Consensus       112 i~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~-~~~~~~~~l~~~G~v-~~G~  179 (192)
                      ++++++++++++++ ++|+++++|+++  ++.+.+++..+.++    |++|+. .++.++++++++|++ .+|.
T Consensus       179 i~~~~~~~~~~~~~-~lGa~~vi~~~~--~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          179 ITTASRNETIEWTK-KMGADIVLNHKE--SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             EEECCSHHHHHHHH-HHTCSEEECTTS--CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSC
T ss_pred             EEEeCCHHHHHHHH-hcCCcEEEECCc--cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECC
Confidence            99999999999999 999999999874  68888887743355    899965 679999999999964 6654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.89  E-value=7.2e-23  Score=166.21  Aligned_cols=163  Identities=20%  Similarity=0.175  Sum_probs=130.2

Q ss_pred             cCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcc-cccCCCCC---------------
Q 029543           22 NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLF-YSFCPGGV---------------   64 (192)
Q Consensus        22 ~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~-~~~~~g~~---------------   64 (192)
                      +.|.+.+++|+|++.++++||.+...+.+..                     ++.+ ..|.+|+.               
T Consensus        43 ~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~ae  122 (349)
T 3pi7_A           43 AVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAE  122 (349)
T ss_dssp             ECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBS
T ss_pred             CCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEeccCCCCcccee
Confidence            7888899999999999999997654433211                     1112 23344442               


Q ss_pred             ------------------------chhHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           65 ------------------------IMPSVTAFAGLYEICSPKKG-EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        65 ------------------------~~~~~ta~~~l~~~~~~~~g-~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                                              +++++|||+++ +.++ ++| ++|+|+||+|++|++++|+||+.|++|++++++++
T Consensus       123 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~  200 (349)
T 3pi7_A          123 YAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDE  200 (349)
T ss_dssp             EEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH-HHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             eEeechHHeEECCCCCCHHHHhhccccHHHHHHHH-HHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence                                    56788999777 5555 666 79999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Ccccc
Q 029543          120 KVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPF  188 (192)
Q Consensus       120 ~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~  188 (192)
                      |+++++ ++|+++++|++++ ++.+.+++.+++ ++    |++|+..++.++++++++|+ +.+|..++. .+++.
T Consensus       201 ~~~~~~-~~Ga~~~~~~~~~-~~~~~v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  274 (349)
T 3pi7_A          201 QIALLK-DIGAAHVLNEKAP-DFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIRE  274 (349)
T ss_dssp             GHHHHH-HHTCSEEEETTST-THHHHHHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCSCCCCSC
T ss_pred             HHHHHH-HcCCCEEEECCcH-HHHHHHHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCCCCCCCc
Confidence            999999 9999999999887 999999988764 55    89999888999999999995 577865543 33443

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.89  E-value=7.5e-23  Score=167.54  Aligned_cols=164  Identities=14%  Similarity=0.116  Sum_probs=130.2

Q ss_pred             cccchhhhhhhhccc---cc------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCC
Q 029543            5 IRNTSKRLCKIQNIL---KQ------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGG   63 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~---g~------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~   63 (192)
                      |++|++|+|++.+..   |.                  ..+|+++||++++...+..-|...   +..   ....+    
T Consensus       103 C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l---~~~---~aa~l----  172 (374)
T 2jhf_A          103 CKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAS---PLE---KVCLI----  172 (374)
T ss_dssp             HHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTC---CHH---HHGGG----
T ss_pred             ccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECCCCC---CHH---Hhhhh----
Confidence            789999999986532   22                  135899999999987665322211   000   00111    


Q ss_pred             CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC--cc
Q 029543           64 VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE--EP  140 (192)
Q Consensus        64 ~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~--~~  140 (192)
                       ++++.|||+++.+.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+++  + 
T Consensus       173 -~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~-  248 (374)
T 2jhf_A          173 -GCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVGATECVNPQDYKK-  248 (374)
T ss_dssp             -GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSS-
T ss_pred             -ccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCceEecccccch-
Confidence             568999999987788999999999999 69999999999999999 8999999999999999 999999999874  4 


Q ss_pred             cHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCC
Q 029543          141 DLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSG  182 (192)
Q Consensus       141 ~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~  182 (192)
                      ++.+.+++.+++++    |++|. +.++.++++++++ |+ +.+|....
T Consensus       249 ~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~  297 (374)
T 2jhf_A          249 PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPD  297 (374)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCT
T ss_pred             hHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCC
Confidence            78888888775554    89985 6899999999999 95 57787654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=5e-23  Score=168.60  Aligned_cols=164  Identities=16%  Similarity=0.074  Sum_probs=130.1

Q ss_pred             cccchhhhhhhhccc---cc------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCC
Q 029543            5 IRNTSKRLCKIQNIL---KQ------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGG   63 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~---g~------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~   63 (192)
                      |++|++|+|++.+..   |.                  ..+|+++||++++...+..-|.....   .   ....+    
T Consensus       104 C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~---~---~aa~l----  173 (374)
T 1cdo_A          104 CQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPL---D---TVCLL----  173 (374)
T ss_dssp             HHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTCCH---H---HHGGG----
T ss_pred             hcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEECCCCCCH---H---HHhhh----
Confidence            789999999876532   22                  13589999999998766533321100   0   00111    


Q ss_pred             CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC--cc
Q 029543           64 VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE--EP  140 (192)
Q Consensus        64 ~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~--~~  140 (192)
                       ++++.|||+++.+.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+++  + 
T Consensus       174 -~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~-  249 (374)
T 1cdo_A          174 -GCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFVNPNDHSE-  249 (374)
T ss_dssp             -GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCCEEECGGGCSS-
T ss_pred             -ccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhCCceEEeccccch-
Confidence             568999999987788999999999999 69999999999999999 8999999999999999 999999999874  4 


Q ss_pred             cHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCC
Q 029543          141 DLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSG  182 (192)
Q Consensus       141 ~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~  182 (192)
                      ++.+.+++.+.+++    |++|+ +.++.++++++++ |+ +.+|...+
T Consensus       250 ~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~  298 (374)
T 1cdo_A          250 PISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL  298 (374)
T ss_dssp             CHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCC
Confidence            78888888776554    89985 6899999999999 95 67787654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.89  E-value=7.8e-23  Score=167.32  Aligned_cols=163  Identities=17%  Similarity=0.160  Sum_probs=129.8

Q ss_pred             cccchhhhhhhhccc---cc------------------cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCC
Q 029543            5 IRNTSKRLCKIQNIL---KQ------------------NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPG   62 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~---g~------------------~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g   62 (192)
                      |++|++|+|++.+..   |.                  ..+|+++||++++...+..-|       +..+. ....+   
T Consensus       102 C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP-------~~l~~~~aa~l---  171 (373)
T 2fzw_A          102 CLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID-------PLAPLDKVCLL---  171 (373)
T ss_dssp             HHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC-------TTSCHHHHGGG---
T ss_pred             HcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECC-------CCCCHHHHhhh---
Confidence            789999999876431   21                  135899999999987665322       22100 00111   


Q ss_pred             CCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCC--c
Q 029543           63 GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKE--E  139 (192)
Q Consensus        63 ~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~--~  139 (192)
                        ++++.|||+++.+.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|+++++|+++  +
T Consensus       172 --~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~  247 (373)
T 2fzw_A          172 --GCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGATECINPQDFSK  247 (373)
T ss_dssp             --GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTCSEEECGGGCSS
T ss_pred             --ccHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEeccccccc
Confidence              568999999987788999999999999 69999999999999999 8999999999999999 999999999874  4


Q ss_pred             ccHHHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCC
Q 029543          140 PDLDVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSG  182 (192)
Q Consensus       140 ~~~~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~  182 (192)
                       ++.+.+++.+++++    |++|+ +.++.++++++++ |+ +.+|....
T Consensus       248 -~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~  296 (373)
T 2fzw_A          248 -PIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAAS  296 (373)
T ss_dssp             -CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCT
T ss_pred             -cHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCC
Confidence             78888888876555    89985 6899999999999 95 57787654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.3e-23  Score=168.11  Aligned_cols=165  Identities=15%  Similarity=0.171  Sum_probs=133.5

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCc-ccccCCCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSL-FYSFCPGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~-~~~~~~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .|++|++|+|++....|...+|+++||++++...+.       .+|+..... ...+     +++++|||+++. ..+++
T Consensus       102 ~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~-------~iP~~~~~~~aa~l-----~~~~~ta~~~l~-~~~~~  168 (347)
T 2hcy_A          102 YCELGNESNCPHADLSGYTHDGSFQQYATADAVQAA-------HIPQGTDLAQVAPI-----LCAGITVYKALK-SANLM  168 (347)
T ss_dssp             TTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSE-------EECTTCCHHHHGGG-----GTHHHHHHHHHH-TTTCC
T ss_pred             hhhCCCcccCccccccccCCCCcceeEEEeccccEE-------ECCCCCCHHHHHHH-----hhhHHHHHHHHH-hcCCC
Confidence            378999999999998998889999999999976554       223221000 1112     568899999994 55899


Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG  158 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g  158 (192)
                      +|++|||+|++|++|++++|+++..|++|+++++++++++.++ ++|++.++|+.+++++.+.+++.+.+++    |++|
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  247 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV  247 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-HTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-HcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence            9999999998899999999999999999999999999999998 9999999998732288888887664444    8888


Q ss_pred             H-HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          159 I-EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       159 ~-~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      . ..++.++++++++|+ +.+|...+
T Consensus       248 ~~~~~~~~~~~l~~~G~iv~~g~~~~  273 (347)
T 2hcy_A          248 SEAAIEASTRYVRANGTTVLVGMPAG  273 (347)
T ss_dssp             CHHHHHHHTTSEEEEEEEEECCCCTT
T ss_pred             cHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            5 789999999999995 57787653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=3.9e-23  Score=170.48  Aligned_cols=166  Identities=22%  Similarity=0.210  Sum_probs=127.8

Q ss_pred             ccccchhhhhhhhc------cccc----cCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHHH
Q 029543            4 SIRNTSKRLCKIQN------ILKQ----NAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTA   71 (192)
Q Consensus         4 ~~~~g~~~~C~~~~------~~g~----~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta   71 (192)
                      .|++|++|+|.+..      .+|+    ..+|+++||++++..  .+..-|.........  .....+     +++++||
T Consensus       102 ~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~--~~aa~l-----~~~~~ta  174 (398)
T 1kol_A          102 SCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKI--RDLTCL-----SDILPTG  174 (398)
T ss_dssp             HHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTH--HHHGGG-----GTHHHHH
T ss_pred             HHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcchhhhc--cccccc-----ccHHHHH
Confidence            37899999999864      3454    357999999999864  333223211110000  000112     5689999


Q ss_pred             HHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhc
Q 029543           72 FAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        72 ~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      |+++ +.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|++ ++|+++++++.+.+++.+
T Consensus       175 ~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~lGa~-~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          175 YHGA-VTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQGFE-IADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             HHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCE-EEETTSSSCHHHHHHHHH
T ss_pred             HHHH-HHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-HcCCc-EEccCCcchHHHHHHHHh
Confidence            9999 578999999999999 69999999999999999 8999999999999999 99997 888876524888898888


Q ss_pred             cC-Cc----ccccHH----------------HHHHHHHhhcCCCe-EEEeeC
Q 029543          151 LC-WV----DFVGIE----------------YCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       151 ~~-g~----d~~g~~----------------~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      ++ ++    |++|+.                .++.++++++++|+ +.+|..
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccc
Confidence            65 65    899864                78999999999995 577765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.89  E-value=8.6e-23  Score=170.84  Aligned_cols=165  Identities=19%  Similarity=0.055  Sum_probs=131.5

Q ss_pred             cccchhhhhhhhccccccC-CCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHH--HhCC
Q 029543            5 IRNTSKRLCKIQNILKQNA-AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYE--ICSP   81 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~~~-~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~--~~~~   81 (192)
                      +..+..++|.+.+..|+.. +|+++||++++...+..-       |+.......    ...+++++|||+++.+  .+++
T Consensus       150 ~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~i-------P~~ls~~~a----A~l~~~~~tA~~al~~~~~~~~  218 (447)
T 4a0s_A          150 ATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPK-------PAHLTWEEA----AVSPLCAGTAYRMLVSDRGAQM  218 (447)
T ss_dssp             GGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEEC-------CTTSCHHHH----HTSHHHHHHHHHHHTSTTTTCC
T ss_pred             ccccccccccccccccccCCCCceeeeeecCHHHcEEC-------CCCCCHHHH----HHhHHHHHHHHHHHHhhhccCC
Confidence            4557789999999999876 499999999998766632       222100000    0115688999999964  3789


Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc------------------HH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD------------------LD  143 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~------------------~~  143 (192)
                      ++|++|||+||+|++|++++|+|++.|++|++++++++|+++++ ++|++.++|+.+. +                  +.
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~  296 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR-ALGCDLVINRAEL-GITDDIADDPRRVVETGRKLA  296 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCCCEEEHHHH-TCCTTGGGCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEecccc-cccccccccccccchhhhHHH
Confidence            99999999998899999999999999999999999999999999 9999999987543 3                  26


Q ss_pred             HHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          144 VALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +.+++.++.++    |++|+..++.++++++++|+ +.+|..++
T Consensus       297 ~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~  340 (447)
T 4a0s_A          297 KLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSG  340 (447)
T ss_dssp             HHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTC
T ss_pred             HHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEEecCCC
Confidence            67777774355    89999999999999999995 57787655

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.88  E-value=6.1e-22  Score=159.74  Aligned_cols=172  Identities=22%  Similarity=0.291  Sum_probs=133.9

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhccc---------------C--------CCcccccCCCCC-------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL---------------D--------TSLFYSFCPGGV-------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~---------------~--------~~~~~~~~~g~~-------   64 (192)
                      .+++...+.|...+++|+|++.++++||.+.....+.               .        ++.+..|.+|+.       
T Consensus        15 ~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~   94 (333)
T 1wly_A           15 NFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPP   94 (333)
T ss_dssp             GEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCSCCTTCEEEECSSS
T ss_pred             eeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCCCCCCCEEEEecCC
Confidence            4455566778888999999999999999654322110               0        111122322221       


Q ss_pred             --------------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE
Q 029543           65 --------------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV  112 (192)
Q Consensus        65 --------------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi  112 (192)
                                                      +++++|||+++.+.+++++|++|+|+||+|++|++++|+++..|++|+
T Consensus        95 ~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi  174 (333)
T 1wly_A           95 LGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVI  174 (333)
T ss_dssp             CCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEE
T ss_pred             CCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence                                            346789999997678999999999999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Cc
Q 029543          113 GSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TP  185 (192)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~  185 (192)
                      ++++++++++.++ ++|++.++|++++ ++.+.+.+.+.+ ++    |++|+..++.++++++++|+ +.+|..++. .+
T Consensus       175 ~~~~~~~~~~~~~-~~g~~~~~d~~~~-~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~  252 (333)
T 1wly_A          175 GTVSTEEKAETAR-KLGCHHTINYSTQ-DFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVADP  252 (333)
T ss_dssp             EEESSHHHHHHHH-HHTCSEEEETTTS-CHHHHHHHHHTTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCCCCC
T ss_pred             EEeCCHHHHHHHH-HcCCCEEEECCCH-HHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCCcCC
Confidence            9999999999999 8999999999887 888888877654 55    89998899999999999995 577876542 34


Q ss_pred             ccc
Q 029543          186 IPF  188 (192)
Q Consensus       186 ~~~  188 (192)
                      +++
T Consensus       253 ~~~  255 (333)
T 1wly_A          253 IRV  255 (333)
T ss_dssp             CCH
T ss_pred             CCh
Confidence            443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.88  E-value=1.6e-22  Score=162.49  Aligned_cols=177  Identities=16%  Similarity=0.101  Sum_probs=129.2

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-c------------------ccccCC
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-L------------------FYSFCP   61 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~------------------~~~~~~   61 (192)
                      |++.+.++... -..+++...+.|.+.+++|+|++.++++||.+.....+.... .                  ...|.+
T Consensus         1 MkA~~~~~~g~-~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~Gv~~~~v   79 (324)
T 3nx4_A            1 MQALILEQQDG-KTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASEDPRFHA   79 (324)
T ss_dssp             CEEEEEEESSS-SEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEESSTTCCT
T ss_pred             CceEEEecCCC-CceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeCCCCCCC
Confidence            66665544221 123455667778888999999999999999765433221100 0                  112333


Q ss_pred             CCC------------------------------------------chhHHHHHHHHH--HHhCCCCCC-EEEEeCCCchH
Q 029543           62 GGV------------------------------------------IMPSVTAFAGLY--EICSPKKGE-YVYVSAASGAV   96 (192)
Q Consensus        62 g~~------------------------------------------~~~~~ta~~~l~--~~~~~~~g~-~VlV~Ga~G~i   96 (192)
                      |+.                                          +++++|||++++  ...++++++ +|||+||+|++
T Consensus        80 GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~v  159 (324)
T 3nx4_A           80 GQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGV  159 (324)
T ss_dssp             TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHH
T ss_pred             CCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHH
Confidence            322                                          557788998875  345566643 49999988999


Q ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCC
Q 029543           97 GQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFR  172 (192)
Q Consensus        97 G~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~  172 (192)
                      |++++|+||++|++|++++++++|+++++ ++|+++++|+++. +.   +++.+.+++    |++|++.++.++++++++
T Consensus       160 G~~aiqla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~-~~---~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~  234 (324)
T 3nx4_A          160 GSTAVALLHKLGYQVAAVSGRESTHGYLK-SLGANRILSRDEF-AE---SRPLEKQLWAGAIDTVGDKVLAKVLAQMNYG  234 (324)
T ss_dssp             HHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTCSEEEEGGGS-SC---CCSSCCCCEEEEEESSCHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEecCCH-HH---HHhhcCCCccEEEECCCcHHHHHHHHHHhcC
Confidence            99999999999999999999999999999 9999999998765 33   444444444    999999999999999999


Q ss_pred             Ce-EEEeeCCCC
Q 029543          173 PL-KIMENDSGS  183 (192)
Q Consensus       173 G~-v~~G~~~~~  183 (192)
                      |+ +.+|..++.
T Consensus       235 G~iv~~G~~~~~  246 (324)
T 3nx4_A          235 GCVAACGLAGGF  246 (324)
T ss_dssp             EEEEECCCTTCS
T ss_pred             CEEEEEecCCCC
Confidence            95 578876553

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.88  E-value=3e-23  Score=169.13  Aligned_cols=160  Identities=14%  Similarity=0.069  Sum_probs=125.5

Q ss_pred             ccccchhhhhhhh-ccc------cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHH
Q 029543            4 SIRNTSKRLCKIQ-NIL------KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGL   75 (192)
Q Consensus         4 ~~~~g~~~~C~~~-~~~------g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l   75 (192)
                      .|++|++|+|++. ..+      |...+|+++||++++...+..-|       +..+. ....+     +++++|||+++
T Consensus       105 ~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP-------~~~~~~~aa~l-----~~~~~ta~~~l  172 (360)
T 1piw_A          105 RCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIP-------ENIPSHLAAPL-----LCGGLTVYSPL  172 (360)
T ss_dssp             HHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECC-------TTSCHHHHGGG-----GTHHHHHHHHH
T ss_pred             hhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECC-------CCCCHHHhhhh-----hhhHHHHHHHH
Confidence            3789999999986 444      66678999999999987665322       22100 01112     56899999999


Q ss_pred             HHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-
Q 029543           76 YEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-  154 (192)
Q Consensus        76 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-  154 (192)
                      . .+++++|++|||+|+ |++|++++|+||++|++|++++++++|+++++ ++|+++++|++++.++.+.++   + ++ 
T Consensus       173 ~-~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v~~~~~~~~~~~~~~---~-~~D  245 (360)
T 1piw_A          173 V-RNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYF---D-TFD  245 (360)
T ss_dssp             H-HTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEEGGGTSCHHHHSC---S-CEE
T ss_pred             H-HcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCCEEEcCcCchHHHHHhh---c-CCC
Confidence            5 489999999999997 99999999999999999999999999999999 999999999864313444333   2 33 


Q ss_pred             ---ccccH---HHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          155 ---DFVGI---EYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       155 ---d~~g~---~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                         |++|+   ..++.++++++++|+ +.+|...+
T Consensus       246 ~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~  280 (360)
T 1piw_A          246 LIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ  280 (360)
T ss_dssp             EEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS
T ss_pred             EEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC
Confidence               89987   688899999999995 57787655

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.88  E-value=3.7e-23  Score=170.72  Aligned_cols=165  Identities=21%  Similarity=0.207  Sum_probs=127.0

Q ss_pred             ccccchhhhhhh--h------ccccc---cCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHH
Q 029543            4 SIRNTSKRLCKI--Q------NILKQ---NAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVT   70 (192)
Q Consensus         4 ~~~~g~~~~C~~--~------~~~g~---~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~t   70 (192)
                      .|++|++|+|.+  .      ..+|.   ..+|+++||++++..  .+..-|........       ....+..+++++|
T Consensus       101 ~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~~-------~~~aa~l~~~~~t  173 (398)
T 2dph_A          101 NCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEK-------IKDLTLISDILPT  173 (398)
T ss_dssp             HHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHHHHT-------HHHHTTTTTHHHH
T ss_pred             hhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCChhhh-------cchhhhhcCHHHH
Confidence            378999999987  2      13443   357999999999864  33322221111000       0001112569999


Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccH-HHHHHh
Q 029543           71 AFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL-DVALKR  148 (192)
Q Consensus        71 a~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~i~~  148 (192)
                      ||+++ +.+++++|++|||+| +|++|++++|+||++|+ +|++++++++|+++++ ++|++ ++|++++ ++ .+.+++
T Consensus       174 a~~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~-~i~~~~~-~~~~~~~~~  248 (398)
T 2dph_A          174 GFHGC-VSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS-DAGFE-TIDLRNS-APLRDQIDQ  248 (398)
T ss_dssp             HHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-TTTCE-EEETTSS-SCHHHHHHH
T ss_pred             HHHHH-HHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCc-EEcCCCc-chHHHHHHH
Confidence            99999 788999999999999 59999999999999999 9999999999999999 99995 8998876 65 888888


Q ss_pred             hccC-Cc----ccccHH---------------HHHHHHHhhcCCCe-EEEeeC
Q 029543          149 MFLC-WV----DFVGIE---------------YCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       149 ~~~~-g~----d~~g~~---------------~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .+++ ++    |++|+.               .++.++++++++|+ +.+|..
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            8766 55    899864               68999999999995 577765

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.88  E-value=8.8e-22  Score=158.10  Aligned_cols=160  Identities=27%  Similarity=0.280  Sum_probs=125.0

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcc-----------------cC--------CCcccccCCCCC----
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSK-----------------LD--------TSLFYSFCPGGV----   64 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~-----------------~~--------~~~~~~~~~g~~----   64 (192)
                      ..+++...+.|...+++|+|++.++++||.+...+.+                 +.        ++....|.+|+.    
T Consensus        19 ~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~   98 (321)
T 3tqh_A           19 KVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGI   98 (321)
T ss_dssp             GGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEE
T ss_pred             ceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEc
Confidence            3456666778888899999999999999976533222                 00        222333444443    


Q ss_pred             ------------------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC
Q 029543           65 ------------------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAG  108 (192)
Q Consensus        65 ------------------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G  108 (192)
                                                          +++++|||+++ +.+++++|++|+|+||+|++|++++|+||++|
T Consensus        99 ~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G  177 (321)
T 3tqh_A           99 AGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG  177 (321)
T ss_dssp             CSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC
Confidence                                                55677999999 88999999999999999999999999999999


Q ss_pred             CEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc-HHHHHHhhccC-Cc--ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          109 CHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD-LDVALKRMFLC-WV--DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       109 a~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~i~~~~~~-g~--d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++|++++ +++++++++ ++|+++++|++++ + +.+.+    .+ .+  |++|++.++.++++++++|+ +.+|...
T Consensus       178 a~vi~~~-~~~~~~~~~-~lGa~~~i~~~~~-~~~~~~~----~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  248 (321)
T 3tqh_A          178 TTVITTA-SKRNHAFLK-ALGAEQCINYHEE-DFLLAIS----TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTIT  248 (321)
T ss_dssp             CEEEEEE-CHHHHHHHH-HHTCSEEEETTTS-CHHHHCC----SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTT
T ss_pred             CEEEEEe-ccchHHHHH-HcCCCEEEeCCCc-chhhhhc----cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCC
Confidence            9999998 567789999 9999999999887 6 55433    22 22  99999888999999999995 5666543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=1e-22  Score=166.65  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=123.3

Q ss_pred             cccchhhhhhhhc--c------ccccCCCCCCCeEEEEEEEeeeChhh-hhhhcccCCCcccccCCCCCchhHHHHHHHH
Q 029543            5 IRNTSKRLCKIQN--I------LKQNAAEGSKDTVLLKNLYLSCDPYM-QKRMSKLDTSLFYSFCPGGVIMPSVTAFAGL   75 (192)
Q Consensus         5 ~~~g~~~~C~~~~--~------~g~~~~g~~~~~vlv~~~~~~v~p~~-~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l   75 (192)
                      |++|.+|+|++..  .      .|...+|+++||++++...+..-|.. ....      ...++     +++++|||+++
T Consensus       119 C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~------~aa~l-----~~~~~tA~~al  187 (369)
T 1uuf_A          119 CEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLA------AVAPL-----LCAGITTYSPL  187 (369)
T ss_dssp             HHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHH------HHGGG-----GTHHHHHHHHH
T ss_pred             cCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHH------Hhhhh-----hhhHHHHHHHH
Confidence            7899999999863  2      14456799999999998665533321 1100      01122     56899999999


Q ss_pred             HHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc
Q 029543           76 YEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV  154 (192)
Q Consensus        76 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~  154 (192)
                      . ..++++|++|||+| +|++|++++|+||++|++|++++++++++++++ ++|+++++|++++ ++.+.+   ..+ .+
T Consensus       188 ~-~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~-~~~~~~---~~g~Dv  260 (369)
T 1uuf_A          188 R-HWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVVNSRNA-DEMAAH---LKSFDF  260 (369)
T ss_dssp             H-HTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEETTCH-HHHHTT---TTCEEE
T ss_pred             H-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEeccccH-HHHHHh---hcCCCE
Confidence            5 46899999999999 599999999999999999999999999999999 9999999998875 544333   222 22


Q ss_pred             --ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCC-ccc
Q 029543          155 --DFVGIE-YCRSLLLVLLFRPL-KIMENDSGST-PIP  187 (192)
Q Consensus       155 --d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~-~~~  187 (192)
                        |++|+. .++.++++++++|+ +.+|...++. +++
T Consensus       261 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  298 (369)
T 1uuf_A          261 ILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPE  298 (369)
T ss_dssp             EEECCSSCCCHHHHHTTEEEEEEEEECCCC-------C
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccC
Confidence              999965 78999999999995 5778765543 344

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.88  E-value=1.1e-22  Score=162.83  Aligned_cols=154  Identities=18%  Similarity=0.124  Sum_probs=114.1

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC--------------------CCcccccCCCCC----------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD--------------------TSLFYSFCPGGV----------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~--------------------~~~~~~~~~g~~----------   64 (192)
                      .+++...+.|.+.+++|+|++.++++||.+...+.+..                    ++....|.+|+.          
T Consensus        16 ~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~   95 (315)
T 3goh_A           16 SVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRH   95 (315)
T ss_dssp             EEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECCTTSC
T ss_pred             eeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCC
Confidence            34556677888889999999999999997654332211                    122233444443          


Q ss_pred             -----------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           65 -----------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        65 -----------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                                                   +++++|||+++ +.+++++|++|||+|| |++|++++|+||++|++|++++
T Consensus        96 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~  173 (315)
T 3goh_A           96 GSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS  173 (315)
T ss_dssp             CSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE
Confidence                                         67899999999 8899999999999997 9999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          116 GSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       116 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                       +++|+++++ ++|++++++     + .   .+. ++++    |++|++.+..++++++++|+ +.+|....
T Consensus       174 -~~~~~~~~~-~lGa~~v~~-----d-~---~~v-~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~  233 (315)
T 3goh_A          174 -ASLSQALAA-KRGVRHLYR-----E-P---SQV-TQKYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIP  233 (315)
T ss_dssp             -SSCCHHHHH-HHTEEEEES-----S-G---GGC-CSCEEEEECC-------TTGGGEEEEEEEEEECCC--
T ss_pred             -ChhhHHHHH-HcCCCEEEc-----C-H---HHh-CCCccEEEECCCchhHHHHHHHhcCCCEEEEEeCCCC
Confidence             999999999 999999984     1 1   122 3344    99998888899999999995 57765443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.88  E-value=7.3e-22  Score=161.03  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             hhHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHhcCCCeeeecCC--
Q 029543           66 MPSVTAFAGLYEICSPKKG-EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK----VDLLKNKFGFDDAFNYKE--  138 (192)
Q Consensus        66 ~~~~ta~~~l~~~~~~~~g-~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~----~~~~~~~~g~~~vi~~~~--  138 (192)
                      ++++|||+++.+.+++++| ++|||+||+|++|++++|+||++|++|+++++++++    ++.++ ++|+++++|+++  
T Consensus       149 ~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~~vi~~~~~~  227 (364)
T 1gu7_A          149 VNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGATQVITEDQNN  227 (364)
T ss_dssp             THHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCSEEEEHHHHH
T ss_pred             ccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH-hcCCeEEEecCccc
Confidence            3688999999666789999 999999988999999999999999999999876554    67788 999999999875  


Q ss_pred             -cccHHHHHHhhc--cC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          139 -EPDLDVALKRMF--LC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       139 -~~~~~~~i~~~~--~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                       + ++.+.+++.+  ++ ++    |++|+..+..++++++++|+ +.+|..++
T Consensus       228 ~~-~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~  279 (364)
T 1gu7_A          228 SR-EFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSF  279 (364)
T ss_dssp             CG-GGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSS
T ss_pred             hH-HHHHHHHHHhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCC
Confidence             5 7888888877  33 55    99998877799999999995 57787553

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.87  E-value=1.4e-21  Score=159.14  Aligned_cols=164  Identities=20%  Similarity=0.146  Sum_probs=121.2

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC----------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV----------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~----------   64 (192)
                      .++...+.|...+++|+|++.++++||.+...+.+..                     ++.+..|.+|+.          
T Consensus        42 l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~  121 (357)
T 1zsy_A           42 VELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGT  121 (357)
T ss_dssp             EEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSSCSCC
T ss_pred             EEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCCCCcc
Confidence            3445567777889999999999999997654332210                     122223444432          


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                                                 +++++|||+++.+.+++++|++|||+||+|++|++++|+||.+|+++++++++
T Consensus       122 ~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~  201 (357)
T 1zsy_A          122 WRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRD  201 (357)
T ss_dssp             SBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             ceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecC
Confidence                                       45789999999777899999999999988999999999999999988777754


Q ss_pred             H----HHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC--Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          118 K----EKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC--WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       118 ~----~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~--g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +    +++++++ ++|+++++|+++.  ..+.+.+.+.+  ++    |++|++.+..++++++++|+ +.+|..++
T Consensus       202 ~~~~~~~~~~~~-~lGa~~vi~~~~~--~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~  274 (357)
T 1zsy_A          202 RPDIQKLSDRLK-SLGAEHVITEEEL--RRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAK  274 (357)
T ss_dssp             CSCHHHHHHHHH-HTTCSEEEEHHHH--HSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCCTT
T ss_pred             ccchHHHHHHHH-hcCCcEEEecCcc--hHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEecCCC
Confidence            3    3578888 9999999987532  12334455433  24    99998877889999999995 57776543

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=157.99  Aligned_cols=162  Identities=20%  Similarity=0.155  Sum_probs=121.4

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---------------------CCcccccCCCCC---------
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---------------------TSLFYSFCPGGV---------   64 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---------------------~~~~~~~~~g~~---------   64 (192)
                      .+++...+.|...+++|+|++.++++|+.+.....+..                     ++....|.+|+.         
T Consensus        17 ~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~G~   96 (349)
T 4a27_A           17 KLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNA   96 (349)
T ss_dssp             GEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEECSSCC
T ss_pred             eeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCCCCCCCEEEEecCCCc
Confidence            35566677888899999999999999997654332211                     122233444443         


Q ss_pred             ---------------------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Q 029543           65 ---------------------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAG  116 (192)
Q Consensus        65 ---------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~  116 (192)
                                                 +++++|||+++.+.+++++|++|+|+||+|++|++++|+||++|+ +|++++ 
T Consensus        97 ~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-  175 (349)
T 4a27_A           97 WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-  175 (349)
T ss_dssp             SBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-
T ss_pred             ceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-
Confidence                                       568899999998888999999999999889999999999999965 899988 


Q ss_pred             CHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          117 SKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       117 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++++++.++  +|+++++| .++ ++.+.+++.+++|+    |++|++.++.++++++++|+ +.+|...
T Consensus       176 ~~~~~~~~~--~ga~~~~~-~~~-~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~~  241 (349)
T 4a27_A          176 STFKHEAIK--DSVTHLFD-RNA-DYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSN  241 (349)
T ss_dssp             CGGGHHHHG--GGSSEEEE-TTS-CHHHHHHHHCTTCEEEEEEECC-------CTTEEEEEEEEEEC---
T ss_pred             CHHHHHHHH--cCCcEEEc-CCc-cHHHHHHHhcCCCceEEEECCCchhHHHHHHHhhcCCEEEEECCCc
Confidence            667777664  89999999 666 89999998876565    99998888999999999995 5777653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.86  E-value=1.2e-22  Score=164.84  Aligned_cols=160  Identities=14%  Similarity=0.225  Sum_probs=121.6

Q ss_pred             ccccchhhhhhhhccccccCC----------CCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHH
Q 029543            4 SIRNTSKRLCKIQNILKQNAA----------EGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFA   73 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~----------g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~   73 (192)
                      .|++|++|+|. ....++..+          |+++||++++..++..-|.....   .   ...++     ++++.|||+
T Consensus       100 ~C~~g~~~~c~-~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~---~---~aa~l-----~~~~~ta~~  167 (348)
T 3two_A          100 PCKEHQEQFCT-KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPL---E---KVAPL-----LCAGITTYS  167 (348)
T ss_dssp             HHHTTCGGGCT-TCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCH---H---HHGGG-----GTHHHHHHH
T ss_pred             hHhCCCcccCc-ccccccccccccccCCcCCccccceEEechhhEEECCCCCCH---H---Hhhhh-----hhhHHHHHH
Confidence            37899999999 556666555          99999999998766533321100   0   01122     668999999


Q ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCC
Q 029543           74 GLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        74 ~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ++ +..++++|++|||+| +|++|++++|+||++|++|++++++++|+++++ ++|+++++ .+.+ .+    .+ .-+-
T Consensus       168 ~l-~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v~-~~~~-~~----~~-~~D~  237 (348)
T 3two_A          168 PL-KFSKVTKGTKVGVAG-FGGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SMGVKHFY-TDPK-QC----KE-ELDF  237 (348)
T ss_dssp             HH-HHTTCCTTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HTTCSEEE-SSGG-GC----CS-CEEE
T ss_pred             HH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCeec-CCHH-HH----hc-CCCE
Confidence            99 556999999999999 599999999999999999999999999999999 99999998 3222 21    11 0011


Q ss_pred             c-ccccHH-HHHHHHHhhcCCCe-EEEeeCC-CCCc
Q 029543          154 V-DFVGIE-YCRSLLLVLLFRPL-KIMENDS-GSTP  185 (192)
Q Consensus       154 ~-d~~g~~-~~~~~~~~l~~~G~-v~~G~~~-~~~~  185 (192)
                      + |++|+. .++.++++++++|+ +.+|... ++.+
T Consensus       238 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~  273 (348)
T 3two_A          238 IISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAP  273 (348)
T ss_dssp             EEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCC
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcc
Confidence            2 999977 99999999999995 5778766 4443

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.86  E-value=2.4e-21  Score=154.23  Aligned_cols=155  Identities=23%  Similarity=0.208  Sum_probs=117.7

Q ss_pred             cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCC-----------------------------------
Q 029543           20 KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGG-----------------------------------   63 (192)
Q Consensus        20 g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~-----------------------------------   63 (192)
                      ..+.|...+++|+|++.++++||.+.....+.... ...|+.+|.                                   
T Consensus        17 ~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~GdrV~~~~~~G~~aey~~v~~~~~~~iP   96 (302)
T 1iz0_A           17 DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPLP   96 (302)
T ss_dssp             ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEETTEEEEEECSSCCSBSEEEEEGGGCEECC
T ss_pred             ECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEECcEEEEecCCcceeeEEEEcHHHcEeCC
Confidence            45677778999999999999999665433221100 001111111                                   


Q ss_pred             ----------CchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           64 ----------VIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        64 ----------~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                                .+++++|||+++.+.. +++|++|+|+|++|++|++++|+++.+|++|+++++++++++.++ ++|++++
T Consensus        97 ~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~  174 (302)
T 1iz0_A           97 EGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEA  174 (302)
T ss_dssp             TTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEE
T ss_pred             CCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEE
Confidence                      1678999999997677 999999999998899999999999999999999999999999999 9999999


Q ss_pred             eecCC-cccHHHHHHhhccC-Cc--ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          134 FNYKE-EPDLDVALKRMFLC-WV--DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       134 i~~~~-~~~~~~~i~~~~~~-g~--d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +|+++ + ++.+.+    .+ .+  | +|++.++.++++++++|+ +.+|...+
T Consensus       175 ~~~~~~~-~~~~~~----~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~~~  222 (302)
T 1iz0_A          175 ATYAEVP-ERAKAW----GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEG  222 (302)
T ss_dssp             EEGGGHH-HHHHHT----TSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC-----
T ss_pred             EECCcch-hHHHHh----cCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCCCC
Confidence            99876 5 665544    22 22  9 998899999999999995 57777654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.86  E-value=2.4e-22  Score=164.14  Aligned_cols=160  Identities=12%  Similarity=0.031  Sum_probs=127.0

Q ss_pred             ccccchhhhhhhhccc--ccc-CCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHH--H-
Q 029543            4 SIRNTSKRLCKIQNIL--KQN-AAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLY--E-   77 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~--g~~-~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~--~-   77 (192)
                      .|++|++|+|.+....  |.. .+|+++||++++...+.       .+|+...      ..+..+++++|||+++.  + 
T Consensus        98 ~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~-------~iP~~l~------~~Aal~~~~~ta~~al~~~~~  164 (366)
T 2cdc_A           98 NCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLV-------KIPKSIE------DIGILAQPLADIEKSIEEILE  164 (366)
T ss_dssp             HHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEE-------EECGGGT------TTGGGHHHHHHHHHHHHHHHH
T ss_pred             hhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeE-------ECcCCcc------hhhhhcCcHHHHHHHHHhhhh
Confidence            3789999999998777  665 68999999999986665       2333211      11222679999999995  3 


Q ss_pred             -HhCCC--C-------CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           78 -ICSPK--K-------GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK---EKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        78 -~~~~~--~-------g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~---~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                       .++++  +       |++|+|+|+ |++|++++|+++.+|++|+++++++   +++++++ ++|++.+ | ++  ++.+
T Consensus       165 ~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~-~~ga~~v-~-~~--~~~~  238 (366)
T 2cdc_A          165 VQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE-ETKTNYY-N-SS--NGYD  238 (366)
T ss_dssp             HGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH-HHTCEEE-E-CT--TCSH
T ss_pred             cccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH-HhCCcee-c-hH--HHHH
Confidence             67888  8       999999997 9999999999999999999999998   8999998 9999988 7 43  5555


Q ss_pred             HHHhhccCCc----ccccHH-HH-HHHHHhhcCCCe-EEEeeCCCC
Q 029543          145 ALKRMFLCWV----DFVGIE-YC-RSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~-~~-~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      .+++ +.+++    |++|.. .+ +.++++++++|+ +.+|...+.
T Consensus       239 ~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~  283 (366)
T 2cdc_A          239 KLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSG  283 (366)
T ss_dssp             HHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSC
T ss_pred             HHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCC
Confidence            6665 43344    899964 77 999999999995 677876554

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.86  E-value=2e-21  Score=156.41  Aligned_cols=164  Identities=18%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC-------------------CCcccccCCCCC------------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD-------------------TSLFYSFCPGGV------------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~-------------------~~~~~~~~~g~~------------   64 (192)
                      +++...+.|...+++|+|++.++++||.+.....+..                   ......|.+|+.            
T Consensus        18 l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~~v~~~~vGdrV~~~~~~~g~~~   97 (328)
T 1xa0_A           18 AGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVTH   97 (328)
T ss_dssp             EEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEECCSSSCCTTCEEEEESTTBTTTB
T ss_pred             eEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEecCCCCCCCCCEEEEccccCCCCC
Confidence            3445566777788999999999999996653322110                   000112333321            


Q ss_pred             ------------------------------chhHHHHHHHHH--HHhCCCCCC-EEEEeCCCchHHHHHHHHHHHcCCEE
Q 029543           65 ------------------------------IMPSVTAFAGLY--EICSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCHV  111 (192)
Q Consensus        65 ------------------------------~~~~~ta~~~l~--~~~~~~~g~-~VlV~Ga~G~iG~~~~q~a~~~Ga~V  111 (192)
                                                    ++++.|+|.+++  +..++++|+ +|||+||+|++|++++|+||++|++|
T Consensus        98 ~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~v  177 (328)
T 1xa0_A           98 FGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTV  177 (328)
T ss_dssp             CCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCE
T ss_pred             CccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEE
Confidence                                          445668887764  346788997 99999988999999999999999999


Q ss_pred             EEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          112 VGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       112 i~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++++++++|+++++ ++|+++++|+++. + .+.+++.+++++    |++|++.++.++++++++|+ +.+|..++
T Consensus       178 i~~~~~~~~~~~~~-~lGa~~~i~~~~~-~-~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~  250 (328)
T 1xa0_A          178 EASTGKAAEHDYLR-VLGAKEVLAREDV-M-AERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGG  250 (328)
T ss_dssp             EEEESCTTCHHHHH-HTTCSEEEECC-----------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSS
T ss_pred             EEEECCHHHHHHHH-HcCCcEEEecCCc-H-HHHHHHhcCCcccEEEECCcHHHHHHHHHhhccCCEEEEEeecCC
Confidence            99999999999999 9999999998754 3 344455544344    89998899999999999995 57787654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.85  E-value=1.3e-21  Score=159.30  Aligned_cols=162  Identities=16%  Similarity=0.131  Sum_probs=123.3

Q ss_pred             cccchhhhhhhhccc-------cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHH
Q 029543            5 IRNTSKRLCKIQNIL-------KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLY   76 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~-------g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~   76 (192)
                      |++|.+|+|.+....       |...+|+++||++++...+..       +|+..+. ...++     ++++.|||+++ 
T Consensus       106 c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~-------~P~~ls~~~aa~l-----~~~~~ta~~~l-  172 (357)
T 2cf5_A          106 CERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVK-------IPEGMAVEQAAPL-----LCAGVTVYSPL-  172 (357)
T ss_dssp             HHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEE-------CCSSCCHHHHTGG-----GTHHHHHHHHH-
T ss_pred             HhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEE-------CcCCCCHHHhhhh-----hhhHHHHHHHH-
Confidence            788999999764321       334689999999999876653       2322100 01112     56899999999 


Q ss_pred             HHhCCC-CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc
Q 029543           77 EICSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV  154 (192)
Q Consensus        77 ~~~~~~-~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~  154 (192)
                      +..+++ +|++|+|+| +|++|++++|+||++|++|++++++++|++.+++++|+++++|+++. +   .+++.+++ .+
T Consensus       173 ~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~-~---~~~~~~~g~D~  247 (357)
T 2cf5_A          173 SHFGLKQPGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQ-A---KMSELADSLDY  247 (357)
T ss_dssp             HHTSTTSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCH-H---HHHHSTTTEEE
T ss_pred             HhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccH-H---HHHHhcCCCCE
Confidence            456888 999999999 69999999999999999999999999999888768999999998753 2   34455443 22


Q ss_pred             --ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCC
Q 029543          155 --DFVGIE-YCRSLLLVLLFRPL-KIMENDSGST  184 (192)
Q Consensus       155 --d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~  184 (192)
                        |++|+. .++.++++++++|+ +.+|...++.
T Consensus       248 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~  281 (357)
T 2cf5_A          248 VIDTVPVHHALEPYLSLLKLDGKLILMGVINNPL  281 (357)
T ss_dssp             EEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCC
T ss_pred             EEECCCChHHHHHHHHHhccCCEEEEeCCCCCCc
Confidence              999965 78999999999995 5778765543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.85  E-value=2e-20  Score=151.45  Aligned_cols=117  Identities=62%  Similarity=0.907  Sum_probs=101.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++.+.+++++|++|||+||+|++|++++|+++..|++|+++++++++++.+++++|++.++|+.+++++.+
T Consensus       137 ~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~  216 (345)
T 2j3h_A          137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTA  216 (345)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHH
T ss_pred             cccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHH
Confidence            56889999999777899999999999988999999999999999999999999999999974699999999875336777


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+++.+++++    |++|++.++.++++++++|+ +.+|..+
T Consensus       217 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~  258 (345)
T 2j3h_A          217 ALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMIS  258 (345)
T ss_dssp             HHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHHHhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            7777664444    89998899999999999995 5777654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.85  E-value=3e-21  Score=157.73  Aligned_cols=165  Identities=15%  Similarity=0.136  Sum_probs=124.4

Q ss_pred             cccchhhhhhhhcc-------ccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHH
Q 029543            5 IRNTSKRLCKIQNI-------LKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLY   76 (192)
Q Consensus         5 ~~~g~~~~C~~~~~-------~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~   76 (192)
                      |++|.+|+|.+...       .|...+|+++||++++...+..       +|+..+. ...++     ++++.|||+++ 
T Consensus       113 c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~-------~P~~ls~~~aa~l-----~~~~~ta~~al-  179 (366)
T 1yqd_A          113 CANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIR-------FPDNMPLDGGAPL-----LCAGITVYSPL-  179 (366)
T ss_dssp             HHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEE-------CCTTSCTTTTGGG-----GTHHHHHHHHH-
T ss_pred             hhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEE-------CCCCCCHHHhhhh-----hhhHHHHHHHH-
Confidence            78899999966532       1334689999999999866552       3322110 11122     66899999999 


Q ss_pred             HHhCCC-CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccC-Cc
Q 029543           77 EICSPK-KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLC-WV  154 (192)
Q Consensus        77 ~~~~~~-~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~-g~  154 (192)
                      +..++. +|++|||+| +|++|++++|+||.+|++|+++++++++++.+++++|+++++|+++. +   .+++.+++ .+
T Consensus       180 ~~~~~~~~g~~VlV~G-aG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~-~---~~~~~~~~~D~  254 (366)
T 1yqd_A          180 KYFGLDEPGKHIGIVG-LGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQ-E---QMQAAAGTLDG  254 (366)
T ss_dssp             HHTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCH-H---HHHHTTTCEEE
T ss_pred             HhcCcCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCH-H---HHHHhhCCCCE
Confidence            456788 999999999 69999999999999999999999999999887668999999998754 3   34455443 22


Q ss_pred             --ccccHH-HHHHHHHhhcCCCe-EEEeeCCCCCccc
Q 029543          155 --DFVGIE-YCRSLLLVLLFRPL-KIMENDSGSTPIP  187 (192)
Q Consensus       155 --d~~g~~-~~~~~~~~l~~~G~-v~~G~~~~~~~~~  187 (192)
                        |++|.. .++.++++++++|+ +.+|...++.+++
T Consensus       255 vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~  291 (366)
T 1yqd_A          255 IIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELP  291 (366)
T ss_dssp             EEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEEC
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcC
Confidence              899965 78999999999995 5778766544444

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.85  E-value=5.4e-20  Score=148.26  Aligned_cols=165  Identities=41%  Similarity=0.547  Sum_probs=129.2

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhh---c-----ccC--------------------------------CCc
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRM---S-----KLD--------------------------------TSL   55 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~---~-----~~~--------------------------------~~~   55 (192)
                      +++...+.|...+++|+|++.++++||.++.+.   +     +..                                ...
T Consensus        26 l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~~~~~~~p~~~g~e~~G~Vv~~~v~~~~vGdrV~~~g~~aey~~v~~~~  105 (333)
T 1v3u_A           26 FELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKG  105 (333)
T ss_dssp             EEEEEEECCCCCTTCEEEEEEEEECCTHHHHHTTTCCTTSBCCCCEEEEEEEESCTTSCTTCEEEECCCSBSEEEESSTT
T ss_pred             eEEEeCCCCCCCCCEEEEEEEEeccCHHHccccCcCCCCcccccceEEEEEecCCCCCCCCCEEEecCceEEEEEechHH
Confidence            445556778788999999999999998654211   0     000                                000


Q ss_pred             ccccCC------------CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 029543           56 FYSFCP------------GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL  123 (192)
Q Consensus        56 ~~~~~~------------g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~  123 (192)
                      ..+++.            +..+++++|||+++.+.+++++|++|+|+||+|++|++++|+++..|++|+++++++++++.
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~  185 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY  185 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            001111            23366789999999777899999999999988999999999999999999999999999999


Q ss_pred             HHHhcCCCeeeecCC-cccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          124 LKNKFGFDDAFNYKE-EPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       124 ~~~~~g~~~vi~~~~-~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++ ++|++.++|+.+ + ++.+.+.+.+.+++    |++|+..++.++++++++|+ +.+|..++
T Consensus       186 ~~-~~g~~~~~d~~~~~-~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~  248 (333)
T 1v3u_A          186 LK-QIGFDAAFNYKTVN-SLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISV  248 (333)
T ss_dssp             HH-HTTCSEEEETTSCS-CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCCC-
T ss_pred             HH-hcCCcEEEecCCHH-HHHHHHHHHhCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEecccc
Confidence            97 999999999887 6 88888887765444    89998899999999999995 57787544

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.84  E-value=3.4e-21  Score=158.05  Aligned_cols=102  Identities=21%  Similarity=0.233  Sum_probs=89.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSA-ASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~G-a~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +++++|||+++. ... ++|++|||+| |+|++|++++|+||++|++|++++++++|+++++ ++|+++++|++++ ++.
T Consensus       154 ~~~~~ta~~~~~-~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~-~~~  229 (379)
T 3iup_A          154 FVNPLTALGMVE-TMR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-AQGAVHVCNAASP-TFM  229 (379)
T ss_dssp             SHHHHHHHHHHH-HHH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-HTTCSCEEETTST-THH
T ss_pred             hhhHHHHHHHHH-Hhc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCcEEEeCCCh-HHH
Confidence            677889998884 444 8999999995 7999999999999999999999999999999999 9999999999988 999


Q ss_pred             HHHHhhccC-Cc----ccccHH-HHHHHHHhhc
Q 029543          144 VALKRMFLC-WV----DFVGIE-YCRSLLLVLL  170 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~~-~~~~~~~~l~  170 (192)
                      +.+++.+++ |+    |++|+. .++.++++++
T Consensus       230 ~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~  262 (379)
T 3iup_A          230 QDLTEALVSTGATIAFDATGGGKLGGQILTCME  262 (379)
T ss_dssp             HHHHHHHHHHCCCEEEESCEEESHHHHHHHHHH
T ss_pred             HHHHHHhcCCCceEEEECCCchhhHHHHHHhcc
Confidence            999998865 65    899964 6678888885

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.84  E-value=3.7e-20  Score=151.60  Aligned_cols=114  Identities=24%  Similarity=0.271  Sum_probs=95.5

Q ss_pred             chhHHHHHHHHHHHhC----CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcc
Q 029543           65 IMPSVTAFAGLYEICS----PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP  140 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~----~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~  140 (192)
                      +++++|||+++.+.++    +++|++|+|+||+|++|++++|+||..|++|++++ +++++++++ ++|++.++|++++ 
T Consensus       161 ~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v~~~~~~-  237 (375)
T 2vn8_A          161 PYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR-KLGADDVIDYKSG-  237 (375)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEEEETTSS-
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH-HcCCCEEEECCch-
Confidence            4568899999976778    89999999999999999999999999999999998 678899998 9999999999887 


Q ss_pred             cHHHHHHhhccCCc--ccccHH--HHHHHHHhhcCCCe-EEEeeCC
Q 029543          141 DLDVALKRMFLCWV--DFVGIE--YCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       141 ~~~~~i~~~~~~g~--d~~g~~--~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++.+.+++..+-.+  |++|+.  .++.++++++++|+ +.+|...
T Consensus       238 ~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          238 SVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             CHHHHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSH
T ss_pred             HHHHHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCc
Confidence            88877765421122  899976  55889999999995 5777543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.84  E-value=1.8e-20  Score=152.47  Aligned_cols=151  Identities=28%  Similarity=0.361  Sum_probs=120.2

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCC--CEEEEeCCCchHHHHHH
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKG--EYVYVSAASGAVGQLVG  101 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g--~~VlV~Ga~G~iG~~~~  101 (192)
                      +|+++||++++...+..-|       +.......++..+..+++++|||+++.+.+++++|  ++|+|+||+|++|++++
T Consensus       106 ~G~~aey~~v~~~~~~~iP-------~~~~~~~~~~~~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~  178 (357)
T 2zb4_A          106 YWPWQTKVILDGNSLEKVD-------PQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAG  178 (357)
T ss_dssp             EEESBSEEEEEGGGCEECC-------GGGGTTCGGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHH
T ss_pred             CCCcEEEEEEchHHceecC-------cccccCchhHHHHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHH
Confidence            3678889888876555322       21100001222334478999999999878899999  99999998899999999


Q ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-E
Q 029543          102 QFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-K  175 (192)
Q Consensus       102 q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v  175 (192)
                      |+++..|+ +|+++++++++++.+++++|++.++|+.++ ++.+.+++.+.+++    |++|+..++.++++++++|+ +
T Consensus       179 ~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~-~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv  257 (357)
T 2zb4_A          179 QIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHII  257 (357)
T ss_dssp             HHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTS-CHHHHHHHHCTTCEEEEEESCCHHHHHHHHHTEEEEEEEE
T ss_pred             HHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCch-HHHHHHHHhcCCCCCEEEECCCHHHHHHHHHHhccCcEEE
Confidence            99999999 999999999999999834999999999887 88888888765444    89999999999999999995 5


Q ss_pred             EEeeCCC
Q 029543          176 IMENDSG  182 (192)
Q Consensus       176 ~~G~~~~  182 (192)
                      .+|..++
T Consensus       258 ~~G~~~~  264 (357)
T 2zb4_A          258 LCGQISQ  264 (357)
T ss_dssp             ECCCGGG
T ss_pred             EECCccc
Confidence            7776543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.84  E-value=2.1e-21  Score=156.41  Aligned_cols=164  Identities=23%  Similarity=0.196  Sum_probs=120.6

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC-------------------CCcccccCCCCC------------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD-------------------TSLFYSFCPGGV------------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~-------------------~~~~~~~~~g~~------------   64 (192)
                      +++...+.|...+++|+|++.++++||.+.....+..                   ......|.+|+.            
T Consensus        19 l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~~v~~~~vGdrV~~~~~~~g~~~   98 (330)
T 1tt7_A           19 VHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSR   98 (330)
T ss_dssp             CEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEECSSTTCCTTCEEEEESTTBTTTB
T ss_pred             eeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEcCCCCCCCCCEEEEcccccCCCC
Confidence            4455567777889999999999999997654322110                   000112232321            


Q ss_pred             ------------------------------chhHHHHHHHHH--HHhCCCCCC-EEEEeCCCchHHHHHHHHHHHcCCEE
Q 029543           65 ------------------------------IMPSVTAFAGLY--EICSPKKGE-YVYVSAASGAVGQLVGQFAKLAGCHV  111 (192)
Q Consensus        65 ------------------------------~~~~~ta~~~l~--~~~~~~~g~-~VlV~Ga~G~iG~~~~q~a~~~Ga~V  111 (192)
                                                    ++++.|+|.+++  +..++++|+ +|||+||+|++|++++|+||.+|++|
T Consensus        99 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~v  178 (330)
T 1tt7_A           99 DGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDV  178 (330)
T ss_dssp             CCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCE
T ss_pred             CccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEE
Confidence                                          345678887764  346788997 99999988999999999999999999


Q ss_pred             EEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          112 VGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       112 i~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      ++++++++|+++++ ++|+++++|+++. + .+.+++.+.+++    |++|++.++.++++++++|+ +.+|..++
T Consensus       179 i~~~~~~~~~~~~~-~lGa~~v~~~~~~-~-~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~  251 (330)
T 1tt7_A          179 VASTGNREAADYLK-QLGASEVISREDV-Y-DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGG  251 (330)
T ss_dssp             EEEESSSSTHHHHH-HHTCSEEEEHHHH-C-SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSC
T ss_pred             EEEeCCHHHHHHHH-HcCCcEEEECCCc-h-HHHHHHhhcCCccEEEECCcHHHHHHHHHhhcCCCEEEEEecCCC
Confidence            99999999999999 9999999987532 2 122233333344    99999999999999999995 57787654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.84  E-value=3.5e-21  Score=170.92  Aligned_cols=155  Identities=16%  Similarity=0.105  Sum_probs=126.9

Q ss_pred             CCCCCCeEEEEEEEeeeChhhhhhhcccC-----------------CCcccccCCCCC----------------------
Q 029543           24 AEGSKDTVLLKNLYLSCDPYMQKRMSKLD-----------------TSLFYSFCPGGV----------------------   64 (192)
Q Consensus        24 ~g~~~~~vlv~~~~~~v~p~~~~~~~~~~-----------------~~~~~~~~~g~~----------------------   64 (192)
                      |...+++|+|++.++++|+.+.....+..                 ++.+..|.+|+.                      
T Consensus       234 ~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~~G~~ae~~~v~~~~~~~  313 (795)
T 3slk_A          234 APLGDGEVRIAMRAAGVNFRDALIALGMYPGVASLGSEGAGVVVETGPGVTGLAPGDRVMGMIPKAFGPLAVADHRMVTR  313 (795)
T ss_dssp             SCCCSSEEEEEEEEEEECHHHHHHTTTCCSSCCCSCCCEEEEEEEECSSCCSSCTTCEEEECCSSCSSSEEEEETTSEEE
T ss_pred             CCCCCCEEEEEEEEEccCHHHHHHHcCCCCCCccccceeEEEEEEeCCCCCcCCCCCEEEEEecCCCcCEEEeehHHEEE
Confidence            45678999999999999997654332211                 223344555554                      


Q ss_pred             -------------chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           65 -------------IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        65 -------------~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                                   +++++|||+++.+.+++++|++|||+||+|++|++++|+||++|++|+++++++ |.+.+  ++|++
T Consensus       314 iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l--~lga~  390 (795)
T 3slk_A          314 IPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAV--ELSRE  390 (795)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGS--CSCGG
T ss_pred             CCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhh--hcChh
Confidence                         567899999998888999999999999999999999999999999999999665 55554  48999


Q ss_pred             eeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          132 DAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       132 ~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +++|+++. ++.+.+++.+++ |+    |++|++.++.++++++++|+ +.+|....
T Consensus       391 ~v~~~~~~-~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~  446 (795)
T 3slk_A          391 HLASSRTC-DFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDV  446 (795)
T ss_dssp             GEECSSSS-THHHHHHHHSCSSCCSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTC
T ss_pred             heeecCCh-hHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHhcCCCEEEEeccccc
Confidence            99999988 999999999887 77    89999999999999999995 67886554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.78  E-value=2.3e-18  Score=128.91  Aligned_cols=115  Identities=21%  Similarity=0.235  Sum_probs=101.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++.+..++++|++|+|+||+|++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.++ ++.+
T Consensus        20 ~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~d~~~~-~~~~   97 (198)
T 1pqw_A           20 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEYVGDSRSV-DFAD   97 (198)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSEEEETTCS-THHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEeeCCcH-HHHH
Confidence            4689999999977788999999999999999999999999999999999999999999998 8999999998877 7878


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .+.+.+.+ ++    |++|.+.++.++++++++|+ +.+|..+
T Consensus        98 ~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A           98 EILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             HHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGG
T ss_pred             HHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCC
Confidence            88776644 45    88898899999999999995 5777654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.73  E-value=7.8e-18  Score=163.23  Aligned_cols=149  Identities=21%  Similarity=0.174  Sum_probs=121.5

Q ss_pred             cccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCC-CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchH
Q 029543           18 ILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCP-GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAV   96 (192)
Q Consensus        18 ~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~-g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~i   96 (192)
                      +.|...+|++++|++++...+..       +|+..     ++.. ...+++++|||+++.+.+++++|++|||+||+|++
T Consensus      1613 V~g~~~~G~~Aeyv~vp~~~v~~-------iPd~l-----s~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgV 1680 (2512)
T 2vz8_A         1613 VMGMVPAEGLATSVLLLQHATWE-------VPSTW-----TLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGV 1680 (2512)
T ss_dssp             EEEECSSCCSBSEEECCGGGEEE-------CCTTS-----CHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHH
T ss_pred             EEEeecCCceeeEEEcccceEEE-------eCCCC-----CHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHH
Confidence            44555568999999998766553       22221     1111 11256899999999888899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccC-Cc----ccccHHHHHHHHHh
Q 029543           97 GQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLC-WV----DFVGIEYCRSLLLV  168 (192)
Q Consensus        97 G~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~-g~----d~~g~~~~~~~~~~  168 (192)
                      |++++|+||+.|++|++++++++|++++++.   +|+++++|+++. ++.+.+++.+++ |+    |++|++.++.++++
T Consensus      1681 G~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~-~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~ 1759 (2512)
T 2vz8_A         1681 GQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDT-SFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRC 1759 (2512)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSS-HHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCH-HHHHHHHHhcCCCCceEEEECCCchHHHHHHHh
Confidence            9999999999999999999999999999842   688999999887 899999988876 66    88899999999999


Q ss_pred             hcCCCe-EEEee
Q 029543          169 LLFRPL-KIMEN  179 (192)
Q Consensus       169 l~~~G~-v~~G~  179 (192)
                      ++++|+ +.+|.
T Consensus      1760 L~~~Gr~V~iG~ 1771 (2512)
T 2vz8_A         1760 LAQHGRFLEIGK 1771 (2512)
T ss_dssp             EEEEEEEEECCC
T ss_pred             cCCCcEEEEeec
Confidence            999995 57774

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.70  E-value=2.9e-08  Score=80.63  Aligned_cols=93  Identities=15%  Similarity=0.064  Sum_probs=68.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCCcccHHHHHHhhccCCc-ccccHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD--AFNYKEEPDLDVALKRMFLCWV-DFVGIE  160 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~i~~~~~~g~-d~~g~~  160 (192)
                      +++|+|+| +|++|+.+++.++.+|++|++++++++|++.++ +++.+.  +++...+ ++.+.++..  +-+ ++++..
T Consensus       167 ~~~VlViG-aGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~--DvVI~~~~~~  241 (361)
T 1pjc_A          167 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE-TLFGSRVELLYSNSA-EIETAVAEA--DLLIGAVLVP  241 (361)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHGGGSEEEECCHH-HHHHHHHTC--SEEEECCCCT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HhhCceeEeeeCCHH-HHHHHHcCC--CEEEECCCcC
Confidence            48999999 599999999999999999999999999999998 766544  4444433 555544321  212 777643


Q ss_pred             H-------HHHHHHhhcCCCe-EEEeeCC
Q 029543          161 Y-------CRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       161 ~-------~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      .       .+..++.++++|+ +.++...
T Consensus       242 ~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          242 GRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             TSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             CCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence            2       6778899999995 5666544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.67  E-value=1.4e-07  Score=76.79  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-ccccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-DFVGIEY  161 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-d~~g~~~  161 (192)
                      .+++|+|+|+ |++|+.+++.++.+|++|+++++++++++.+++.+|.+...+..+..++.+.++..  +-+ ++++...
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~--DvVi~~~g~~~  241 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHA--DLLIGAVLVPG  241 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHC--SEEEECCC---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCC--CEEEECCCCCc
Confidence            4689999995 99999999999999999999999999999887347876444443332454444321  212 7777432


Q ss_pred             -------HHHHHHhhcCCCe-EEEeeCCC
Q 029543          162 -------CRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       162 -------~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                             .+..++.++++|+ +.++...+
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~~g  270 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVDQG  270 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC----
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecCCC
Confidence                   6788999999994 56766543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.61  E-value=2e-07  Score=76.18  Aligned_cols=96  Identities=21%  Similarity=0.125  Sum_probs=69.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-ccccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-DFVGIEY  161 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-d~~g~~~  161 (192)
                      +|++|+|+| +|++|+.+++.++.+|++|+++++++++++.+++.+|++..++.....++.+.+.+.  +-+ ++++.+.
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~a--DvVi~~~~~p~  243 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRA--DLVIGAVLVPG  243 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHC--SEEEECCCCTT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCC--CEEEECCCcCC
Confidence            589999999 699999999999999999999999999999888347876433332221454444321  212 6665332


Q ss_pred             -------HHHHHHhhcCCCe-EEEeeCC
Q 029543          162 -------CRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       162 -------~~~~~~~l~~~G~-v~~G~~~  181 (192)
                             .+..++.++++|+ +.++...
T Consensus       244 ~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          244 AKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCcceecHHHHhcCCCCcEEEEEecCC
Confidence                   6788899999995 5677543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.49  E-value=3.6e-07  Score=76.94  Aligned_cols=103  Identities=14%  Similarity=0.069  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHH
Q 029543           67 PSVTAFAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVA  145 (192)
Q Consensus        67 ~~~ta~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~  145 (192)
                      ...++++++.+... ..+|++|+|+| .|.||+.+++.++.+|++|+++++++++.+.++ ++|++ ++      ++.+.
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG-~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-~~Ga~-~~------~l~e~  326 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICG-YGDVGKGCAEAMKGQGARVSVTEIDPINALQAM-MEGFD-VV------TVEEA  326 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHH
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCE-Ee------cHHHH
Confidence            44566777743322 67899999999 799999999999999999999999999998888 88985 32      23332


Q ss_pred             HHhhccCCc--ccccHH-HHH-HHHHhhcCCCe-EEEeeCC
Q 029543          146 LKRMFLCWV--DFVGIE-YCR-SLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       146 i~~~~~~g~--d~~g~~-~~~-~~~~~l~~~G~-v~~G~~~  181 (192)
                      ++   ...+  +++|.. .+. ..++.++++|+ +.+|...
T Consensus       327 l~---~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          327 IG---DADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             GG---GCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             Hh---CCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            21   1122  677743 344 78899999995 5666643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.45  E-value=4e-07  Score=74.52  Aligned_cols=96  Identities=11%  Similarity=0.042  Sum_probs=67.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee-eecCCc--------------cc----HH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEE--------------PD----LD  143 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~--------------~~----~~  143 (192)
                      ++++|+|+| +|++|+.++++++.+|++|+++++++++++.++ ++|++.+ ++..+.              .+    ..
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            689999999 799999999999999999999999999999998 8998755 333210              00    11


Q ss_pred             HHHHhhccC-Cc--ccc---cHH----HHHHHHHhhcCCCe-EEEeeC
Q 029543          144 VALKRMFLC-WV--DFV---GIE----YCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       144 ~~i~~~~~~-g~--d~~---g~~----~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      +.+.+...+ .+  +++   |..    .....++.|+++++ +.++..
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~  296 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVE  296 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecC
Confidence            223333333 33  676   522    23788999999995 566653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.30  E-value=1e-06  Score=72.50  Aligned_cols=49  Identities=18%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      ++++|+|+| +|.+|+.++++++.+|++|+++++++++++.++ ++|++.+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~-~lGa~~~  219 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFL  219 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH-HTTCEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCEEE
Confidence            588999999 799999999999999999999999999999998 8998754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.21  E-value=3.5e-06  Score=69.36  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHh---CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHhcCCCeeeecCCccc
Q 029543           67 PSVTAFAGLYEIC---SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKV-DLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        67 ~~~ta~~~l~~~~---~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~  141 (192)
                      +..++|+++....   .-.+|++|+|+| +|++|.++++.++..|+ +|++++|++++. +.++ ++|++ ++++  + +
T Consensus       147 ~~s~a~~av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~-~~g~~-~~~~--~-~  220 (404)
T 1gpj_A          147 AVSIGSAAVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-DLGGE-AVRF--D-E  220 (404)
T ss_dssp             CCSHHHHHHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-HHTCE-ECCG--G-G
T ss_pred             CccHHHHHHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HcCCc-eecH--H-h
Confidence            4457777763322   124799999999 69999999999999999 999999999987 5555 88875 4443  2 4


Q ss_pred             HHHHHHhhccCCc-ccccHH-HH--HHHHHh--h--cCCC-eEEEeeCC
Q 029543          142 LDVALKRMFLCWV-DFVGIE-YC--RSLLLV--L--LFRP-LKIMENDS  181 (192)
Q Consensus       142 ~~~~i~~~~~~g~-d~~g~~-~~--~~~~~~--l--~~~G-~v~~G~~~  181 (192)
                      +.+.+..  .+-+ ++++.. .+  ...++.  +  ++++ .++++...
T Consensus       221 l~~~l~~--aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          221 LVDHLAR--SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             HHHHHHT--CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             HHHHhcC--CCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence            5444421  1112 666632 11  244555  4  4555 67777754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.08  E-value=1.2e-05  Score=61.06  Aligned_cols=99  Identities=13%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhh
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      +.+ ....+.++++||..| +| .|.++.++++. +.+|++++.+++.++.+++.   .+.+.-++.... ++.+..  .
T Consensus        82 ~~~-~~~~~~~~~~vldiG-~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~--~  154 (248)
T 2yvl_A           82 YIA-LKLNLNKEKRVLEFG-TG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV-DFKDAE--V  154 (248)
T ss_dssp             HHH-HHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS-CTTTSC--C
T ss_pred             HHH-HhcCCCCCCEEEEeC-CC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc-Chhhcc--c
Confidence            555 567888999999999 67 69999999998 77999999999999888732   344211111111 222111  0


Q ss_pred             ccCCccc----cc--HHHHHHHHHhhcCCCeEEEe
Q 029543          150 FLCWVDF----VG--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       150 ~~~g~d~----~g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                      ..+.+|.    .+  ...++.+.+.|+++|++++-
T Consensus       155 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~  189 (248)
T 2yvl_A          155 PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFL  189 (248)
T ss_dssp             CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEE
T ss_pred             CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEE
Confidence            1113332    22  25889999999999965443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.07  E-value=2e-05  Score=64.94  Aligned_cols=105  Identities=17%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           70 TAFAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        70 ta~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      ..++++.+... .-.|++|+|.| .|.||..+++.++.+|++|+++++++.+...+. ..|... .      ++.+.+.+
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-~~G~~v-~------~Leeal~~  275 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-MDGFRL-V------KLNEVIRQ  275 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE-C------CHHHHTTT
T ss_pred             HHHHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-HcCCEe-c------cHHHHHhc
Confidence            44556644433 45799999999 899999999999999999999999998777776 667532 1      33332221


Q ss_pred             hccCCc--ccccHH-HH-HHHHHhhcCCCe-EEEeeCCCCCcc
Q 029543          149 MFLCWV--DFVGIE-YC-RSLLLVLLFRPL-KIMENDSGSTPI  186 (192)
Q Consensus       149 ~~~~g~--d~~g~~-~~-~~~~~~l~~~G~-v~~G~~~~~~~~  186 (192)
                         ..+  .+.|.. .+ ...++.|+++++ +.+|....+..+
T Consensus       276 ---ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EId~  315 (435)
T 3gvp_A          276 ---VDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDV  315 (435)
T ss_dssp             ---CSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTG
T ss_pred             ---CCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccCCH
Confidence               122  555532 33 478899999985 566665444333

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.06  E-value=2.1e-05  Score=61.42  Aligned_cols=57  Identities=12%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~  139 (192)
                      .|+.+||+||++|||..+++.....|++|++++|++++++.+.+++|...   ..|..++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~   87 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANL   87 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCH
Confidence            58999999999999999999888999999999999999888776887643   2455554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.96  E-value=3.8e-05  Score=60.53  Aligned_cols=97  Identities=14%  Similarity=0.063  Sum_probs=67.2

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ..++++++++||.+| +|+.|..++.+++..|++|++++.+++.++.+++.   .|.+.+ ..... +..+    +..+.
T Consensus       116 ~la~l~~g~rVLDIG-cG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~g-Da~~----l~d~~  188 (298)
T 3fpf_A          116 ALGRFRRGERAVFIG-GGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVITG-DETV----IDGLE  188 (298)
T ss_dssp             HHTTCCTTCEEEEEC-CCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSE-EEEES-CGGG----GGGCC
T ss_pred             HHcCCCCcCEEEEEC-CCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCe-EEEEC-chhh----CCCCC
Confidence            356889999999999 88888888888888899999999999999988832   355322 21111 2211    11223


Q ss_pred             cccc------c--HHHHHHHHHhhcCCCeEEEeeC
Q 029543          154 VDFV------G--IEYCRSLLLVLLFRPLKIMEND  180 (192)
Q Consensus       154 ~d~~------g--~~~~~~~~~~l~~~G~v~~G~~  180 (192)
                      +|.+      .  ...++...+.|+|||++++...
T Consensus       189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            4322      2  2488999999999997665543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.93  E-value=3.8e-06  Score=59.01  Aligned_cols=106  Identities=11%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHH
Q 029543           67 PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVAL  146 (192)
Q Consensus        67 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i  146 (192)
                      |.+++++++ +......+++|+|+| +|.+|..+++.++..|++|++.++++++.+.+.++++.+. ....   ++.+.+
T Consensus         5 ~~sv~~~a~-~~~~~~~~~~v~iiG-~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~-~~~~---~~~~~~   78 (144)
T 3oj0_A            5 KVSIPSIVY-DIVRKNGGNKILLVG-NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEY-VLIN---DIDSLI   78 (144)
T ss_dssp             CCSHHHHHH-HHHHHHCCCEEEEEC-CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEE-EECS---CHHHHH
T ss_pred             cccHHHHHH-HHHHhccCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCce-Eeec---CHHHHh
Confidence            456777877 344444599999999 7999999999888889999999999998877655788532 2222   454444


Q ss_pred             HhhccCCc-ccccHHHHHHHHHhhcCCCe-EEEeeC
Q 029543          147 KRMFLCWV-DFVGIEYCRSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       147 ~~~~~~g~-d~~g~~~~~~~~~~l~~~G~-v~~G~~  180 (192)
                      .+.  +-+ .+++........+.+++++. +-++..
T Consensus        79 ~~~--Divi~at~~~~~~~~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           79 KNN--DVIITATSSKTPIVEERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             HTC--SEEEECSCCSSCSBCGGGCCTTCEEEECCSS
T ss_pred             cCC--CEEEEeCCCCCcEeeHHHcCCCCEEEEccCC
Confidence            321  111 56553211111266777774 455553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.92  E-value=0.00016  Score=48.16  Aligned_cols=85  Identities=15%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCCee-eecCCcccHHHHHHhhccC-C-c-ccc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGFDDA-FNYKEEPDLDVALKRMFLC-W-V-DFV  157 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~i~~~~~~-g-~-d~~  157 (192)
                      .+.+|+|+|+ |.+|..+++.+...| .+|+++++++++.+.++ ..+...+ .|..+.    +.+.+...+ . + +++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~----~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDE----AGLAKALGGFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCH----HHHHHHTTTCSEEEECS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCH----HHHHHHHcCCCEEEECC
Confidence            3578999996 999999999999999 69999999999999887 7776543 344332    222222222 2 2 777


Q ss_pred             cHHHHHHHHHhhcCCC
Q 029543          158 GIEYCRSLLLVLLFRP  173 (192)
Q Consensus       158 g~~~~~~~~~~l~~~G  173 (192)
                      +.......++.....|
T Consensus        78 ~~~~~~~~~~~~~~~g   93 (118)
T 3ic5_A           78 PFFLTPIIAKAAKAAG   93 (118)
T ss_dssp             CGGGHHHHHHHHHHTT
T ss_pred             CchhhHHHHHHHHHhC
Confidence            7555555555555556

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.89  E-value=5.7e-05  Score=57.59  Aligned_cols=64  Identities=11%  Similarity=0.203  Sum_probs=47.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~i  146 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.+++|... ..|..+.+++.+.+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   68 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGF   68 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHH
Confidence            47899999999999999998888889999999999988877764566332 24555442343333

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.88  E-value=5.9e-05  Score=57.60  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=43.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .|++++|+||+|+||..+++.....|++|+++++++++.+.+.++++..
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   53 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKK   53 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCc
Confidence            5789999999999999999988889999999999999888776566654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.87  E-value=6.4e-05  Score=58.37  Aligned_cols=65  Identities=23%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVALK  147 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i~  147 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++.+.+.++++...   ..|..+.+++.+.+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~   96 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIE   96 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence            58899999999999999998888889999999999999888775776542   235554423444343

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.87  E-value=7.4e-05  Score=57.29  Aligned_cols=49  Identities=16%  Similarity=0.230  Sum_probs=43.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++++.+.++++..
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   56 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDA   56 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCc
Confidence            4789999999999999999888888999999999999988877566654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.87  E-value=9.7e-05  Score=61.16  Aligned_cols=100  Identities=17%  Similarity=0.016  Sum_probs=68.0

Q ss_pred             HHHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhh
Q 029543           71 AFAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        71 a~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      .+.++.+... .-.|++|+|.| .|.||+.+++.++.+|++|+++++++.+...+. ..|... +      ++.+.+++.
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG-~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-~~G~~v-v------~LeElL~~A  303 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCG-YGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-MDGFEV-V------TLDDAASTA  303 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCEE-C------CHHHHGGGC
T ss_pred             HHHHHHHhcCCcccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-hcCcee-c------cHHHHHhhC
Confidence            4455544333 45799999999 899999999999999999999999888766666 666632 2      333333221


Q ss_pred             ccCCc-ccccHH-H-HHHHHHhhcCCCe-EEEeeCC
Q 029543          150 FLCWV-DFVGIE-Y-CRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       150 ~~~g~-d~~g~~-~-~~~~~~~l~~~G~-v~~G~~~  181 (192)
                        +-+ .+.|.. . -...++.|+++++ +.+|...
T Consensus       304 --DIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          304 --DIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             --SEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             --CEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence              111 455533 2 3678899999985 4666544

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.86  E-value=5.6e-05  Score=58.05  Aligned_cols=49  Identities=14%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++++.+.++++..
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   55 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPR   55 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCc
Confidence            5889999999999999999888888999999999999988877566543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.85  E-value=7.9e-05  Score=56.70  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=43.5

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      ..++++|||+||+|+||..+++.....|++|++++|++++++.+.+++...
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   61 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDN   61 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSS
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccC
Confidence            346899999999999999999888888999999999999888876555543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.84  E-value=9.5e-05  Score=56.78  Aligned_cols=64  Identities=13%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i  146 (192)
                      .++++||+||+|+||..+++.....|++|+++++++++.+.+.++++...   ..|..+++++.+.+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~   73 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAI   73 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHH
Confidence            57899999999999999998888889999999999988887765665442   23555442333333

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.82  E-value=0.0001  Score=57.38  Aligned_cols=57  Identities=12%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~  139 (192)
                      .+++++|+||+|+||..+++.....|++|+++++++++.+.+.++++...   ..|..+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~   85 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSA   85 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCH
Confidence            57899999999999999998888889999999999998887765666543   2355544

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.81  E-value=0.0001  Score=56.65  Aligned_cols=46  Identities=15%  Similarity=-0.021  Sum_probs=40.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +++|||+||+++||..+++.....|++|+++++++++.+.+. +-+.
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~-~~~~   47 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFA-KERP   47 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-TTCT
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhcC
Confidence            478999999999999999888889999999999999988887 4443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.81  E-value=7.4e-05  Score=56.67  Aligned_cols=46  Identities=13%  Similarity=0.074  Sum_probs=40.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +++++|+||+|+||..+++.....|++|++++|++++++.+.++++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   48 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG   48 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence            6789999999999999998888889999999999998887764554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.80  E-value=7.5e-05  Score=57.06  Aligned_cols=62  Identities=21%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC---eeeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD---DAFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~  144 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++.+.+.++++..   ...|..+.+++.+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~   72 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEA   72 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHH
Confidence            5889999999999999999888888999999999998888776455432   2245555423333

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.79  E-value=0.00011  Score=57.16  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=42.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .|++++|+||+++||..+++.....|++|++++|++++++.+.++++..
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   52 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGN   52 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCc
Confidence            4789999999999999999888888999999999999888877566543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.78  E-value=0.00012  Score=56.25  Aligned_cols=46  Identities=24%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.+.+.+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEI   50 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            5789999999999999999888888999999999999888776444

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.78  E-value=9.4e-05  Score=56.66  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+||+|+||..+++.+...|++|++++|++++.+.+.++++.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   51 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD   51 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC
Confidence            478999999999999999988888899999999999888776645543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.77  E-value=4.5e-05  Score=62.06  Aligned_cols=48  Identities=21%  Similarity=0.156  Sum_probs=44.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD  132 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  132 (192)
                      ++.+|+|+| +|.+|+.+++.++.+|++|++.++++++++.++ ++|++.
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~lGa~~  230 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR-SVGAQW  230 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH-HTTCEE
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeE
Confidence            678999999 799999999999999999999999999999999 898864

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.77  E-value=9.9e-05  Score=57.46  Aligned_cols=57  Identities=23%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~  139 (192)
                      .|+++||+||+|+||..+++.....|++|+++++++++.+.+.++++...   ..|..+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~   87 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDE   87 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCH
Confidence            58899999999999999998888889999999999988887765665432   2355544

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.77  E-value=8.1e-05  Score=57.62  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~  139 (192)
                      .|++++|+||+|+||..+++.....|++|+++++++++++.+.++++...   ..|..++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~   69 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNE   69 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCH
Confidence            57899999999999999998888889999999999988877765666432   2455544

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.76  E-value=0.0001  Score=56.14  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=41.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.++++.
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   57 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA   57 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc
Confidence            578999999999999999988888899999999999887776545543

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.75  E-value=0.00015  Score=55.88  Aligned_cols=47  Identities=13%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE   51 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            47899999999999999998888889999999999988887764554

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.75  E-value=0.00012  Score=56.87  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++++.+.++++.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   74 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGD   74 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC
Confidence            578999999999999999988888899999999999988877656653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.73  E-value=8.4e-05  Score=57.33  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCcccHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEEPDLD  143 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~  143 (192)
                      .|++++|+||++|||..+++.....|++|+.+++++++++.+.++   .|...   ..|..+++++.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~   72 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVE   72 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHH
Confidence            589999999999999999988888999999999999888776533   45443   24555542333

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.72  E-value=7e-05  Score=58.42  Aligned_cols=45  Identities=20%  Similarity=0.274  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   76 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGE   76 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            588999999999999999988888899999999999887766533

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.71  E-value=0.00022  Score=55.03  Aligned_cols=43  Identities=26%  Similarity=0.305  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   62 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA   62 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888888999999999988776654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.70  E-value=6.5e-05  Score=61.62  Aligned_cols=48  Identities=15%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD  132 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  132 (192)
                      ++.+|+|+| +|.+|+.++++++.+|++|++.++++++++.++ ++|++.
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~~G~~~  236 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRLGAVVSATDVRPAAKEQVA-SLGAKF  236 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH-HTTCEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCce
Confidence            578999999 799999999999999999999999999999999 888853

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.70  E-value=0.00043  Score=51.54  Aligned_cols=95  Identities=11%  Similarity=-0.043  Sum_probs=57.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHH-HHHHHHHhcCCC-ee--eecCCcccHHHHHHhhccCCc-cccc
Q 029543           85 EYVYVSAASGAVGQLVGQFAK-LAGCHVVGSAGSKE-KVDLLKNKFGFD-DA--FNYKEEPDLDVALKRMFLCWV-DFVG  158 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~-~~Ga~Vi~~~~~~~-~~~~~~~~~g~~-~v--i~~~~~~~~~~~i~~~~~~g~-d~~g  158 (192)
                      ++|+|+||+|++|..+++.+. ..|++|++++|+++ +.+.+. ..+.. .+  .|..+.+++.+.+...  +.+ .+.|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~--d~vv~~ag   82 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-IDHERVTVIEGSFQNPGXLEQAVTNA--EVVFVGAM   82 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-HTSTTEEEEECCTTCHHHHHHHHTTC--SEEEESCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-cCCCceEEEECCCCCHHHHHHHHcCC--CEEEEcCC
Confidence            569999999999999988776 78999999999988 776664 23322 22  2444431333322211  111 4445


Q ss_pred             H-H-HHHHHHHhhcCCC--e-EEEeeCCC
Q 029543          159 I-E-YCRSLLLVLLFRP--L-KIMENDSG  182 (192)
Q Consensus       159 ~-~-~~~~~~~~l~~~G--~-v~~G~~~~  182 (192)
                      . . ..+..++.++..|  + |.++....
T Consensus        83 ~~n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           83 ESGSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             CCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            2 1 2556667666554  4 45665543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.70  E-value=9.6e-05  Score=55.73  Aligned_cols=47  Identities=26%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+.+|+|+||+|++|..+++.+...|++|++++|++++.+.+. ..++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-ERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH-hCCC
Confidence            4789999999999999999888888999999999999988887 6566

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.70  E-value=0.00021  Score=54.85  Aligned_cols=43  Identities=16%  Similarity=0.270  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   48 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAA   48 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.70  E-value=0.0002  Score=55.36  Aligned_cols=49  Identities=20%  Similarity=0.353  Sum_probs=43.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .|++++|+||+|+||..+++.....|++|+++++++++++.+.++++..
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   74 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKD   74 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCc
Confidence            5889999999999999999888888999999999999888776567654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.69  E-value=0.0002  Score=50.72  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=59.6

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhh-ccC-C-c-c
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM-FLC-W-V-D  155 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~-~~~-g-~-d  155 (192)
                      ...++++|+|.| +|.+|+.+++.++..|.+|+++++++++.+.++++.|.. ++..... +. +.+.+. ..+ . + .
T Consensus        15 ~~~~~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~-~~~~d~~-~~-~~l~~~~~~~ad~Vi~   90 (155)
T 2g1u_A           15 KKQKSKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF-TVVGDAA-EF-ETLKECGMEKADMVFA   90 (155)
T ss_dssp             --CCCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE-EEESCTT-SH-HHHHTTTGGGCSEEEE
T ss_pred             cccCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc-EEEecCC-CH-HHHHHcCcccCCEEEE
Confidence            345789999999 799999999999999999999999998877665234554 3332222 21 223322 111 1 1 6


Q ss_pred             cccHH-HHHHHHHhhcC-CC-eEEEeeC
Q 029543          156 FVGIE-YCRSLLLVLLF-RP-LKIMEND  180 (192)
Q Consensus       156 ~~g~~-~~~~~~~~l~~-~G-~v~~G~~  180 (192)
                      +++.. ....+...++. .+ ..++...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           91 FTNDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             CSSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EeCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            67743 44455556665 45 3344433

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.68  E-value=0.00025  Score=54.57  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   54 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASK   54 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.67  E-value=0.00031  Score=53.11  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=40.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..+++.+...|++|++++|++++.+.+.+++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC   51 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            5789999999999999999888889999999999998877765344

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.67  E-value=0.00017  Score=56.30  Aligned_cols=65  Identities=9%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVALK  147 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i~  147 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++.+.+.++++...   ..|..+.+++.+.+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~   82 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFAD   82 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHH
Confidence            58899999999999999998888889999999999998888774554322   234444423444343

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.67  E-value=0.00017  Score=55.93  Aligned_cols=48  Identities=27%  Similarity=0.322  Sum_probs=41.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++++.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   51 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPD   51 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTT
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccC
Confidence            468999999999999999988888999999999999888777645554

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.66  E-value=0.00026  Score=54.96  Aligned_cols=43  Identities=19%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   63 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL   63 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776554

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.65  E-value=8.5e-05  Score=57.33  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~~~i  146 (192)
                      .|++++|+||+++||..+++.....|++|+++++++++++.+.++   .|.+.   ..|..+++++.+.+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~   77 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAF   77 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence            589999999999999999998888999999999999887665433   34432   23555542444333

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.65  E-value=9.7e-05  Score=56.63  Aligned_cols=48  Identities=21%  Similarity=0.237  Sum_probs=34.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++++.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   53 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA   53 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            578999999999999999988888899999999998877766545554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.64  E-value=0.00015  Score=54.67  Aligned_cols=42  Identities=14%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   43 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIA   43 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            678999999999999999888889999999999988877654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.64  E-value=0.00014  Score=55.64  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   53 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVA   53 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5889999999999999999888888999999999998877665

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.64  E-value=0.00029  Score=54.10  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=40.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.+++.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   57 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE   57 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            47899999999999999998888889999999999988777663443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.63  E-value=0.00011  Score=56.32  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++++.+.++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE   50 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            578999999999999999988888899999999998887766533

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.00014  Score=55.66  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDE   50 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            478999999999999999988878899999999999887776533

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.63  E-value=0.00019  Score=54.90  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=41.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.++++..
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   59 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   59 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCc
Confidence            5789999999999999999888888999999999988777666466543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.63  E-value=0.00025  Score=55.32  Aligned_cols=46  Identities=11%  Similarity=0.214  Sum_probs=40.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.+.+.+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   72 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEI   72 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            5789999999999999999888888999999999998877766444

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.63  E-value=0.00029  Score=54.44  Aligned_cols=46  Identities=17%  Similarity=0.193  Sum_probs=40.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL   53 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            5789999999999999999888888999999999998887766454

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.63  E-value=0.00014  Score=55.20  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      .|++++|+||+|++|..+++.....|++|++++|++++++.+.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   56 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSD   56 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence            58899999999999999998888889999999999988776653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.62  E-value=0.00017  Score=56.62  Aligned_cols=46  Identities=17%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++.+.+.+++
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   85 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAEL   85 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5789999999999999999888888999999999988877665444

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.62  E-value=0.00029  Score=53.80  Aligned_cols=49  Identities=20%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++++..
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   53 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGER   53 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc
Confidence            4789999999999999999888888999999999998887776466543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.62  E-value=0.00014  Score=56.30  Aligned_cols=46  Identities=15%  Similarity=0.382  Sum_probs=39.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++++.+.+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   48 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI   48 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4789999999999999999888888999999999998877765333

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.62  E-value=0.00016  Score=55.16  Aligned_cols=45  Identities=18%  Similarity=0.246  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ   52 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            578999999999999999988888899999999999887776533

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.60  E-value=0.00014  Score=56.80  Aligned_cols=45  Identities=18%  Similarity=0.099  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~   55 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK   55 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            578999999999999999988888899999999999876665433

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.60  E-value=0.00019  Score=53.95  Aligned_cols=63  Identities=13%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVALK  147 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i~  147 (192)
                      +++||+||+|++|..+++.....|++|++++|++++++.+.++++...   ..|..+.+++.+.+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   67 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFE   67 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHH
Confidence            469999999999999998888889999999999999888875664332   245554423433333

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.60  E-value=0.00016  Score=55.64  Aligned_cols=45  Identities=24%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   72 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE   72 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            578999999999999999988888899999999999887766533

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.60  E-value=0.00015  Score=57.61  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++|||+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~   49 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKAL   49 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999888888999999999998877665

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.59  E-value=0.00013  Score=56.20  Aligned_cols=56  Identities=18%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHhcCCCee-eecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD-LLKNKFGFDDA-FNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~-~~~~~~g~~~v-i~~~~~  139 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.. .++ +.+...+ .|..+.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dv~~~   83 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR-QAGAVALYGDFSCE   83 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH-HHTCEEEECCTTSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-hcCCeEEECCCCCH
Confidence            4789999999999999999888888999999999976643 344 5564322 355544

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.59  E-value=3.7e-05  Score=58.88  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~  123 (192)
                      .|++++|+||+++||..+++.....|++|+++++++++++.
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~   50 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA   50 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh
Confidence            59999999999999999999888899999999998776543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.59  E-value=0.00017  Score=56.75  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=39.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++++.+.++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   74 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG   74 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            588999999999999999988888899999999999887776533

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.59  E-value=0.00019  Score=54.71  Aligned_cols=45  Identities=22%  Similarity=0.337  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++++.+.++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDE   50 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            478999999999999999988888899999999998887765533

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.58  E-value=0.00019  Score=55.29  Aligned_cols=43  Identities=19%  Similarity=0.172  Sum_probs=38.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+++||..+++.....|++|++++|++++.+.+.
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   49 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAE   49 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988877655

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.58  E-value=0.00017  Score=55.54  Aligned_cols=45  Identities=20%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   53 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVAD   53 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            578999999999999999988888899999999999887765533

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.57  E-value=0.00017  Score=55.65  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++++.+.
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   61 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAAR   61 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888889999999999988877654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.56  E-value=0.00019  Score=55.24  Aligned_cols=46  Identities=17%  Similarity=0.244  Sum_probs=40.0

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      -.|++++|+||+++||..+++.....|++|++++|++++.+.+.++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   54 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ   54 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence            3689999999999999999988888899999999999887776533

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.56  E-value=0.00019  Score=55.91  Aligned_cols=43  Identities=33%  Similarity=0.411  Sum_probs=38.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.+...|++|++++|++++++.+.
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   69 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV   69 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4789999999999999999888888999999999998877654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.55  E-value=0.00016  Score=55.65  Aligned_cols=43  Identities=9%  Similarity=0.080  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+|  |||..+++.....|++|++++|++++++.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~   49 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELE   49 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            589999999877  8999999888889999999999987776655

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.55  E-value=0.00019  Score=55.01  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   53 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVA   53 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999887788999999999988777665

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.55  E-value=0.0002  Score=55.69  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=38.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ..++++||+||+|+||..+++.....|++|++++|++++.+.+.+++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   68 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGL   68 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            35789999999999999999888888999999999998877665333

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.55  E-value=0.00022  Score=55.42  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   54 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQE   54 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            478999999999999999988888899999999998877665433

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.54  E-value=0.00052  Score=50.80  Aligned_cols=96  Identities=15%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFD-D--AFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~-~--vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++||-.| +|. |..++.+++. +.+|++++.+++.++.+++.   +|.+ .  ++..+    ..+.+....
T Consensus        49 ~~l~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d----~~~~~~~~~  121 (204)
T 3njr_A           49 AALAPRRGELLWDIG-GGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT----APAALADLP  121 (204)
T ss_dssp             HHHCCCTTCEEEEET-CTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC----TTGGGTTSC
T ss_pred             HhcCCCCCCEEEEec-CCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc----hhhhcccCC
Confidence            556788999999999 666 8899999988 88999999999998888743   4554 2  23222    211111110


Q ss_pred             -cCCc--cccc-HHHHHHHHHhhcCCCeEEEee
Q 029543          151 -LCWV--DFVG-IEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       151 -~~g~--d~~g-~~~~~~~~~~l~~~G~v~~G~  179 (192)
                       -+.+  +... ...++.+.+.|+|+|++++..
T Consensus       122 ~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (204)
T 3njr_A          122 LPEAVFIGGGGSQALYDRLWEWLAPGTRIVANA  154 (204)
T ss_dssp             CCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCEEEECCcccHHHHHHHHHhcCCCcEEEEEe
Confidence             0111  2222 227888999999999765443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.54  E-value=0.00024  Score=54.46  Aligned_cols=43  Identities=14%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   50 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCL   50 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.53  E-value=0.0005  Score=52.95  Aligned_cols=47  Identities=15%  Similarity=0.275  Sum_probs=39.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.++++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   61 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG   61 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC
Confidence            47899999999999999998888889999999999887766554554

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.53  E-value=0.00016  Score=56.39  Aligned_cols=46  Identities=22%  Similarity=0.337  Sum_probs=40.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++++.+.+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   52 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEI   52 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5789999999999999999888888999999999998887776444

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.53  E-value=0.00022  Score=54.61  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   55 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTV   55 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888888999999999988766544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.53  E-value=0.00018  Score=55.94  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   75 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE   75 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            589999999999999999988888899999999998877665533

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.53  E-value=0.00024  Score=54.45  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASR   50 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            478999999999999999988888899999999998877765533

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.53  E-value=0.00023  Score=54.00  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~   46 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFE   46 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988777665

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.52  E-value=0.00026  Score=54.39  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=40.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.+++.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA   52 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence            47899999999999999998888889999999999988777653443

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.52  E-value=0.00047  Score=52.49  Aligned_cols=48  Identities=8%  Similarity=0.259  Sum_probs=39.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-HHHHH-HHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK-EKVDL-LKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~-~~~~~-~~~~~g~~  131 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++ ++.+. ++ +.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~   55 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-NLGRR   55 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH-hcCCc
Confidence            478999999999999999988888899999999987 66553 44 55543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.52  E-value=0.00023  Score=54.57  Aligned_cols=43  Identities=19%  Similarity=0.232  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   46 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVA   46 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.52  E-value=0.00036  Score=53.27  Aligned_cols=63  Identities=17%  Similarity=0.317  Sum_probs=46.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVALK  147 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i~  147 (192)
                      ++++|+||+|+||..+++.....|++|++++|++++++.+.++++...   ..|..+.+++.+.+.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   66 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLA   66 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHH
Confidence            368999999999999998888889999999999988877764665332   235554424444444

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.52  E-value=0.00048  Score=53.76  Aligned_cols=43  Identities=9%  Similarity=0.234  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~   67 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA   67 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.52  E-value=0.00022  Score=55.22  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIG   69 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5889999999999999999888888999999999988776654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.52  E-value=0.00026  Score=54.75  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++++.+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   62 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECL   62 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.51  E-value=0.00026  Score=54.86  Aligned_cols=43  Identities=28%  Similarity=0.421  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .++++||+||+|+||..+++.+...|++|++++|++++.+.+.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   73 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA   73 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.51  E-value=0.00023  Score=54.91  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   51 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETI   51 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888888999999999988766654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.50  E-value=0.00028  Score=53.81  Aligned_cols=43  Identities=12%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV   54 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999987765544

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.50  E-value=0.00026  Score=54.99  Aligned_cols=46  Identities=24%  Similarity=0.269  Sum_probs=39.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.+++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l   73 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL   73 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4789999999999999999888888999999999988877655344

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.50  E-value=0.00028  Score=54.19  Aligned_cols=45  Identities=16%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS   50 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            578999999999999999988888899999999998877665433

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.50  E-value=0.0011  Score=51.01  Aligned_cols=42  Identities=17%  Similarity=0.273  Sum_probs=34.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~  124 (192)
                      .|+++||+||+++||..+++.....|++|++++++ +++.+.+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~   59 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKV   59 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            57899999999999999998888889999987754 4444444

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.49  E-value=0.00024  Score=54.91  Aligned_cols=46  Identities=11%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++++.+.+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   50 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4789999999999999999888888999999999998877665344

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.49  E-value=0.00014  Score=56.14  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .++++||+||+|+||..+++.....|++|++++|++++++.+.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   57 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN   57 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh
Confidence            4789999999999999999888888999999999987765543

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.49  E-value=0.00032  Score=53.70  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=38.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++ +.+.++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~   50 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG   50 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh
Confidence            47899999999999999998888889999999999877 44443554

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.49  E-value=0.0008  Score=50.72  Aligned_cols=46  Identities=17%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.++.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC   51 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            5789999999999999999888888999999999988877665333

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.49  E-value=0.00026  Score=54.96  Aligned_cols=43  Identities=16%  Similarity=0.295  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   47 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETR   47 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988877654

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.48  E-value=0.00027  Score=53.44  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVA   48 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.48  E-value=0.00075  Score=50.65  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=39.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++.+.+.++++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE   50 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            5789999999999999998888889999999999988877664553

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.48  E-value=0.0003  Score=53.75  Aligned_cols=46  Identities=13%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.+++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL   51 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            4789999999999999999888888999999999988877665333

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.47  E-value=0.0003  Score=53.76  Aligned_cols=42  Identities=12%  Similarity=0.109  Sum_probs=37.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   43 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA   43 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            578999999999999999888888999999999988776654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.47  E-value=0.00032  Score=53.92  Aligned_cols=43  Identities=21%  Similarity=0.186  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   48 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCK   48 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999888888999999999988766544

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.47  E-value=0.00021  Score=55.37  Aligned_cols=45  Identities=16%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+++||+||+|+||..+++.....|++|++++|++++.+.+.++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   69 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQE   69 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            589999999999999999988888899999999998887766533

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.46  E-value=0.00028  Score=54.72  Aligned_cols=43  Identities=16%  Similarity=0.331  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+|+||..+++.....|++|++++|+.++.+.+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   68 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAA   68 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5889999999999999999888888999999999988766554

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.46  E-value=0.00031  Score=53.26  Aligned_cols=46  Identities=9%  Similarity=0.125  Sum_probs=39.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.+++
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV   50 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            4789999999999999999888888999999999988777665344

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.46  E-value=0.0006  Score=52.30  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=36.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .+++|+|+||+|++|..+++.....|++|+++++ ++++.+.+.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~   63 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV   63 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence            4789999999999999999888888999999998 776665543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.46  E-value=0.00027  Score=53.73  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   52 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV   52 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4789999999999999999888888999999999988766554

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.45  E-value=0.00029  Score=55.29  Aligned_cols=43  Identities=16%  Similarity=0.325  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~   67 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK   67 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888888999999999988776654

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.45  E-value=0.00041  Score=52.68  Aligned_cols=45  Identities=16%  Similarity=0.066  Sum_probs=38.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-e--CCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-A--GSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~--~~~~~~~~~~~~~  128 (192)
                      |++++|+||+|+||..+++.....|++|+++ +  |++++.+.+.+++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~   48 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN   48 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh
Confidence            4689999999999999998888889999999 6  9988887776455

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.45  E-value=0.00032  Score=53.32  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=37.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++| ++++.+.+.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   46 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVV   46 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            4789999999999999999888888999999998 777666544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.45  E-value=0.00035  Score=53.98  Aligned_cols=43  Identities=19%  Similarity=0.155  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~   72 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA   72 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence            5789999999999999999888888999999999988776654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.44  E-value=0.00036  Score=52.90  Aligned_cols=45  Identities=18%  Similarity=0.097  Sum_probs=38.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++.+.+.+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTH   46 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999999999999999888888999999999988877665343

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.44  E-value=0.00085  Score=52.36  Aligned_cols=47  Identities=23%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ..|++++|+||+|++|..+++.+...|++|++++|++++.+.+.+++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~  163 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV  163 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHH
Confidence            36899999999999999999888888999999999988877665343

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.43  E-value=0.0002  Score=55.65  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+++||..+++.....|++|++++|++++.+.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   74 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQ   74 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            5899999999999999999888888999999999987766554

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.43  E-value=0.00032  Score=54.14  Aligned_cols=45  Identities=13%  Similarity=0.125  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++| ++++.+.+.++
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   55 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAE   55 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH
Confidence            4789999999999999999888888999999999 88777665433

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.42  E-value=0.00039  Score=53.21  Aligned_cols=43  Identities=12%  Similarity=-0.042  Sum_probs=37.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.... .|++|++++|+.++.+.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~   46 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAV   46 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHH
Confidence            578999999999999998887777 8999999999987766554

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.42  E-value=0.00068  Score=51.91  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK-VDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~-~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++ .+.+.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   46 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR   46 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHH
Confidence            47899999999999999998888889999999998776 55544

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.41  E-value=0.0004  Score=54.33  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   59 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA   59 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.41  E-value=0.0006  Score=51.53  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +++++|+||+|++|..+++.....|++|++++|++++  ..+ +++.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~--~~~-~~~~   45 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE--AAQ-SLGA   45 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHH-HHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHH-hhCc
Confidence            5789999999999999998888889999999998776  233 5553

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.40  E-value=0.00038  Score=53.36  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   55 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECL   55 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999888888999999999988776654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.38  E-value=0.00069  Score=51.07  Aligned_cols=42  Identities=14%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      +++++|+||+|++|..+++.....|++|+++ +|++++.+.+.
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~   43 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVA   43 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            4689999999999999998888889999998 88887766554

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.38  E-value=0.00072  Score=56.64  Aligned_cols=99  Identities=14%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             HHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhh
Q 029543           71 AFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        71 a~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      .+.++.+.... -.|++++|+| .|+||..+++.++..|++|+++++++.+.+.+. ..|++ +.+..   +..   . .
T Consensus       251 l~dgi~r~tg~~L~GKtVvVtG-aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~~le---e~~---~-~  320 (488)
T 3ond_A          251 LPDGLMRATDVMIAGKVAVVAG-YGDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VLTLE---DVV---S-E  320 (488)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECCGG---GTT---T-T
T ss_pred             HHHHHHHHcCCcccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cCCHH---HHH---H-h
Confidence            34445444443 4799999999 679999999999999999999999998888877 66653 21111   110   0 0


Q ss_pred             ccCCc-ccccH-HHH-HHHHHhhcCCCe-EEEeeC
Q 029543          150 FLCWV-DFVGI-EYC-RSLLLVLLFRPL-KIMEND  180 (192)
Q Consensus       150 ~~~g~-d~~g~-~~~-~~~~~~l~~~G~-v~~G~~  180 (192)
                       .+-+ ++.|. ..+ ...++.++++++ +.+|..
T Consensus       321 -aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          321 -ADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             -CSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             -cCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence             0111 44452 222 346788888875 466654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.38  E-value=0.00032  Score=53.68  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKL---AGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|+||..+++....   .|++|++++|++++.+.+.+++
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l   53 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence            478999999999999988876666   7999999999988877665343

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.38  E-value=0.00042  Score=53.17  Aligned_cols=43  Identities=21%  Similarity=0.168  Sum_probs=37.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      .++++||+||+|+||..+++.....|++|+++ ++++++.+.+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~   46 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETA   46 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            57899999999999999998888899998886 88887766655

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00056  Score=52.30  Aligned_cols=47  Identities=26%  Similarity=0.338  Sum_probs=38.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      |++++|+||+++||..+++.....  |++|+.++|++++++.+.++++.
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~   50 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGD   50 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGG
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCC
Confidence            678999999999999888655555  57999999999988887756654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.36  E-value=0.00046  Score=53.93  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~~~~~  127 (192)
                      .+++++|+||+|+||..+++.....|++|++++ |++++.+.+.++
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~   53 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   53 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence            478999999999999999988888899999999 998877665533

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.35  E-value=0.00045  Score=53.04  Aligned_cols=46  Identities=30%  Similarity=0.442  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASG-AVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G-~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+| +||..+++.....|++|++++|++++.+.+.+++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l   67 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL   67 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence            588999999876 8999999888888999999999998877665444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.35  E-value=0.00054  Score=49.67  Aligned_cols=49  Identities=14%  Similarity=0.049  Sum_probs=43.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeee
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAF  134 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi  134 (192)
                      +++|+|.| .|.+|..+++.++.. |.+|+++++++++.+.++ +.|...+.
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-~~g~~~~~   88 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHR-SEGRNVIS   88 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-HTTCCEEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-HCCCCEEE
Confidence            67899999 899999999999988 999999999999999998 88876543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.35  E-value=0.00049  Score=52.52  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=36.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++| ++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   49 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVL   49 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence            4789999999999999999888888999999999 777665544

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00074  Score=52.73  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=47.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhc-----CCCe---eeecCCcccHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC---HVVGSAGSKEKVDLLKNKF-----GFDD---AFNYKEEPDLDVALKR  148 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~~~~-----g~~~---vi~~~~~~~~~~~i~~  148 (192)
                      .|+++||+||+|+||..+++.....|+   +|+.++|++++++.+.+++     +...   ..|..+.+++.+.+.+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~  108 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN  108 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence            478999999999999988876666666   9999999998887766333     3221   2455555355555544

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.35  E-value=0.00028  Score=53.66  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=38.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   47 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE   47 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4789999999999999999888888999999999988776554

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.34  E-value=0.001  Score=51.12  Aligned_cols=65  Identities=14%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHhcCCCee--eecCCcccHHHHHH
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSK---EKVDLLKNKFGFDDA--FNYKEEPDLDVALK  147 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~---~~~~~~~~~~g~~~v--i~~~~~~~~~~~i~  147 (192)
                      .+++++|+||+  |+||..+++.....|++|++++|++   +..+.+.++.+....  .|..+.+++.+.+.
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~   79 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFA   79 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHH
Confidence            47899999998  9999999988888899999999987   344444423343332  35554423443333

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.34  E-value=0.00038  Score=54.18  Aligned_cols=43  Identities=19%  Similarity=0.161  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK-EKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~-~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++ ++.+.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~   65 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLA   65 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH
Confidence            478999999999999999988888899999999997 6665554

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.34  E-value=0.00043  Score=52.81  Aligned_cols=39  Identities=28%  Similarity=0.282  Sum_probs=34.6

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      ..+++++|+||+|+||..+++.....|++|++++|+++.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   55 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL   55 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            468899999999999999998888889999999998743

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.33  E-value=0.00079  Score=51.63  Aligned_cols=48  Identities=29%  Similarity=0.367  Sum_probs=40.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK--EKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~--~~~~~~~~~~g~~  131 (192)
                      .|++++|+||+++||..+++.....|++|++++++.  +..+.++ +.|..
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-~~g~~   57 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIA-KDGGN   57 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH-HhCCc
Confidence            589999999999999999998889999999999874  3455566 66654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.33  E-value=0.00033  Score=54.11  Aligned_cols=42  Identities=14%  Similarity=0.087  Sum_probs=36.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .|++++|+||+++||..+++.....|++|+++++++++.+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~   47 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFL   47 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHH
Confidence            589999999999999999988888899999999987654443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.32  E-value=0.00044  Score=51.39  Aligned_cols=45  Identities=18%  Similarity=0.116  Sum_probs=38.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|||+||+|.+|..+++.+...|.+|++++|++++.+.+. ..+..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~   46 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVA   46 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCce
Confidence            5999999999999999888888999999999998877665 44443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.32  E-value=0.00037  Score=52.95  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|+ +++.+.+.
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   49 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETI   49 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHH
Confidence            47899999999999999998888889999999998 66665543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.31  E-value=0.00053  Score=54.60  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~~~~~  127 (192)
                      .++++||+||+|+||..+++.....|++|++++ |++++.+.+.++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~   90 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   90 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            578999999999999999988888899999999 998887766533

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.30  E-value=0.00049  Score=52.66  Aligned_cols=42  Identities=7%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK--VDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~--~~~~~  125 (192)
                      +++++|+||+|+||..+++.....|++|++++|++++  .+.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   45 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETI   45 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHH
Confidence            5789999999999999998777789999999998776  55443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.30  E-value=0.0009  Score=46.45  Aligned_cols=49  Identities=22%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      ..++|+|.| .|.+|..+++.++..|.+|+++++++++.+.++ +.|...+
T Consensus         6 ~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~-~~g~~~i   54 (140)
T 3fwz_A            6 ICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELR-ERGVRAV   54 (140)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEE
T ss_pred             CCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HcCCCEE
Confidence            357899999 899999999999999999999999999999998 7887544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.30  E-value=0.00047  Score=51.00  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=35.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      +|+|+||+|.+|..+++.+...|.+|++++|++++.+.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~   40 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT   40 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc
Confidence            599999999999999998888899999999998876654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.30  E-value=0.00077  Score=51.89  Aligned_cols=48  Identities=13%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHhcCC
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGSKEK-VDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~-~~~~~~~~g~  130 (192)
                      .+++++|+||  +|+||..+++.....|++|++++|++++ ++.+.++++.
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   56 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPA   56 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCC
Confidence            5789999998  8999999998888889999999998765 3555535553

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.29  E-value=0.0014  Score=50.15  Aligned_cols=57  Identities=18%  Similarity=0.189  Sum_probs=41.2

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCee--eecCCc
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKE---KVDLLKNKFGFDDA--FNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~---~~~~~~~~~g~~~v--i~~~~~  139 (192)
                      .+++++|+||+  |+||..+++.....|++|++++|+++   ..+.+.++.+....  .|..+.
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~   70 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQD   70 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCH
Confidence            47899999998  99999999877778999999999875   44444423443222  355544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.29  E-value=0.0014  Score=51.29  Aligned_cols=89  Identities=17%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc--ccccH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV--DFVGI  159 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~--d~~g~  159 (192)
                      -.|++|+|+| .|.+|..+++.++.+|++|++.++++++.+.++ ++|++ .++.  + ++.+.+.+   ..+  .++..
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~-~~~~--~-~l~~~l~~---aDvVi~~~p~  223 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGME-PFHI--S-KAAQELRD---VDVCINTIPA  223 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSE-EEEG--G-GHHHHTTT---CSEEEECCSS
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCe-ecCh--h-hHHHHhcC---CCEEEECCCh
Confidence            3689999999 899999999999999999999999998888777 78865 3332  1 34333221   122  33332


Q ss_pred             H-HHHHHHHhhcCCCe-EEEee
Q 029543          160 E-YCRSLLLVLLFRPL-KIMEN  179 (192)
Q Consensus       160 ~-~~~~~~~~l~~~G~-v~~G~  179 (192)
                      . .....++.++++++ +.++.
T Consensus       224 ~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          224 LVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             CCBCHHHHHHSCTTCEEEECSS
T ss_pred             HHhCHHHHHhcCCCCEEEEecC
Confidence            1 22346778888884 45554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.28  E-value=0.0014  Score=52.94  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             EEEEeeeChhhhhhhcccCCCccccc--CCC-CCchhHHHHHHHHH------HHhCC--CCCCEEEEeCCCchHHHHHHH
Q 029543           34 KNLYLSCDPYMQKRMSKLDTSLFYSF--CPG-GVIMPSVTAFAGLY------EICSP--KKGEYVYVSAASGAVGQLVGQ  102 (192)
Q Consensus        34 ~~~~~~v~p~~~~~~~~~~~~~~~~~--~~g-~~~~~~~ta~~~l~------~~~~~--~~g~~VlV~Ga~G~iG~~~~q  102 (192)
                      +..-+++++.+..|+.+... +....  ..| ...-..+|+|..+.      +....  -.|++|.|.| .|.||+.+++
T Consensus       115 pa~D~gt~~~~m~~~~~~~~-~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G-~GnVG~~~A~  192 (355)
T 1c1d_A          115 TGPDVNTNSADMDTLNDTTE-FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG-LGAVGGSLAS  192 (355)
T ss_dssp             EEECTTCCHHHHHHHHHHCS-CBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEEC-CSHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHhcC-eeeccchhhCCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEC-cCHHHHHHHH
Confidence            55556667766556555421 11111  111 11223466655321      22233  4799999999 9999999999


Q ss_pred             HHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543          103 FAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus       103 ~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .++.+|++|++.++++++.+..+ ++|++
T Consensus       193 ~l~~~GakVvvsD~~~~~~~~a~-~~ga~  220 (355)
T 1c1d_A          193 LAAEAGAQLLVADTDTERVAHAV-ALGHT  220 (355)
T ss_dssp             HHHHTTCEEEEECSCHHHHHHHH-HTTCE
T ss_pred             HHHHCCCEEEEEeCCccHHHHHH-hcCCE
Confidence            99999999999998887755665 77763

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00068  Score=52.72  Aligned_cols=43  Identities=9%  Similarity=0.213  Sum_probs=36.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .++++||+||+|+||..+++.....|++|+++++ ++++.+.+.
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~   67 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVT   67 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence            4789999999999999999888888999999998 556555544

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.27  E-value=0.00066  Score=52.36  Aligned_cols=43  Identities=28%  Similarity=0.299  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      .|++++|+||+|+||..+++.....|++|++++|+ +++.+.++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   71 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALK   71 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            58899999999999999998888889999999984 44444443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.26  E-value=0.00076  Score=52.25  Aligned_cols=35  Identities=11%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      -.|++++|+||+|+||..+++.....|++|+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            35899999999999999999888888999999998

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.26  E-value=0.0012  Score=50.37  Aligned_cols=96  Identities=14%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccC-C
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLC-W  153 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~-g  153 (192)
                      ...++++||-.| +|. |..+..+++..  +.+|++++.+++.++.+++.   .|...-+..... +..+.+...... .
T Consensus        60 ~~~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           60 RLTQAKRILEIG-TLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG-PALQSLESLGECPA  136 (248)
T ss_dssp             HHHTCSEEEEEC-CTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHTCCSCCC
T ss_pred             hhcCCCEEEEec-CCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHhcCCCCC
Confidence            345789999999 554 88888999876  46999999999998888743   355422222223 555544443221 3


Q ss_pred             cc-----cc--c-HHHHHHHHHhhcCCCeEEEe
Q 029543          154 VD-----FV--G-IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       154 ~d-----~~--g-~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +|     ..  . ...++.+.+.|+|||++++.
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            33     22  2 24788899999999976654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.26  E-value=0.00052  Score=53.36  Aligned_cols=43  Identities=14%  Similarity=0.270  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~   85 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV   85 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            4789999999999999999888888999999998887766554

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.25  E-value=0.00072  Score=52.23  Aligned_cols=43  Identities=21%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|+++++ ++++.+.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   70 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVV   70 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence            5889999999999999999888888999999888 555555543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.25  E-value=0.00067  Score=54.53  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=34.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .|++++|+||+++||..+++.+...|++|++++|++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            58899999999999999998888889999999998763

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.24  E-value=0.00055  Score=53.05  Aligned_cols=44  Identities=16%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ++++|+||+|+||..+++.....|++|++++|++++++.+.+++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~   65 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL   65 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            78999999999999999888888999999999998887766454

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.23  E-value=0.00048  Score=51.97  Aligned_cols=45  Identities=24%  Similarity=0.200  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+||+|++|..+++.+...|  ++|++++|++++.+.++ ++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~-~~   48 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-SI   48 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH-TC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHH-hc
Confidence            36789999999999999998888889  99999999988887776 55

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.23  E-value=0.00082  Score=52.05  Aligned_cols=35  Identities=11%  Similarity=0.071  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++||+||+|+||..+++.....|++|++++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            58899999999999999998888889999999987

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.23  E-value=0.00075  Score=52.25  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .|++++|+||+|+||..+++.....|++|+++++++...+.+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   71 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVA   71 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH
Confidence            588999999999999999988888899999999775443333

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.22  E-value=0.00072  Score=50.97  Aligned_cols=42  Identities=26%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      |++++|+||+|++|..+++.....|++|+++ +|++++.+.+.
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~   43 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVS   43 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            5789999999999999998888899999884 78887766554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.22  E-value=0.00075  Score=52.54  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+++||..+++.....|++|++++|+++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            5789999999999999999888888999999999875

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.22  E-value=0.00076  Score=50.90  Aligned_cols=45  Identities=11%  Similarity=0.128  Sum_probs=38.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-------HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-------~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +++++|+||+|++|..+++.....|+       +|++++|++++.+.+.+++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~   53 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC   53 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHH
Confidence            57899999999999999987777899       9999999988877665333

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.21  E-value=0.0014  Score=51.22  Aligned_cols=50  Identities=14%  Similarity=0.070  Sum_probs=42.5

Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      +.+...+.++++||-.| +|. |..+..+++..|++|++++.+++.++.+++
T Consensus        64 ~~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIG-CGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEET-CTT-SHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEee-ccC-cHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            33556788999999999 664 899999999889999999999998888874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.21  E-value=0.00096  Score=51.81  Aligned_cols=43  Identities=12%  Similarity=0.094  Sum_probs=36.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|+++++ ++++.+.+.
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   71 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVI   71 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence            5789999999999999999888889999999985 666655543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.21  E-value=0.00094  Score=51.58  Aligned_cols=35  Identities=11%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++||+||+|+||..+++.....|++|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            58899999999999999998888889999999987

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.20  E-value=0.00095  Score=51.82  Aligned_cols=35  Identities=14%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+++||..+++.....|++|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            58999999999999999998888889999999887

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.20  E-value=0.0015  Score=50.44  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcCCCe--eeecCCc
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKE---KVDLLKNKFGFDD--AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~---~~~~~~~~~g~~~--vi~~~~~  139 (192)
                      .+++++|+||+  |+||..+++.....|++|++++|+++   ..+.++++.+...  ..|..+.
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~   68 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKE   68 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCH
Confidence            47899999998  99999999888888999999999875   4444542344222  2355544

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.19  E-value=0.00099  Score=52.21  Aligned_cols=35  Identities=11%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+++||..+++.....|++|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            58899999999999999998888889999999987

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.19  E-value=0.0019  Score=50.13  Aligned_cols=47  Identities=11%  Similarity=0.251  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhcC
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKE---KVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~---~~~~~~~~~g  129 (192)
                      .|++++|+||+  |+||..+++.....|++|++++|+++   ..+.+.++.+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~   71 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG   71 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence            57899999998  99999999888888999999999875   3444442334

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.19  E-value=0.0016  Score=50.46  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++++|+||+|+||..+++.....|++|+++++++++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            57899999999999999998888889999999988643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.19  E-value=0.001  Score=46.03  Aligned_cols=47  Identities=34%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD  132 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  132 (192)
                      .++|+|.| .|.+|..+++.++..|.+|+++++++++.+.++ +.|...
T Consensus         6 ~~~v~I~G-~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~-~~~~~~   52 (141)
T 3llv_A            6 RYEYIVIG-SEAAGVGLVRELTAAGKKVLAVDKSKEKIELLE-DEGFDA   52 (141)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HCCCcE
Confidence            46899999 699999999999999999999999999999998 767643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.19  E-value=0.001  Score=51.42  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      .|++++|+||+++||..+++.....|++|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            5889999999999999999888888999999988

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.18  E-value=0.0016  Score=51.69  Aligned_cols=61  Identities=21%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---------CHHHHHHHHH---hcCCCeeeecCCcccHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---------SKEKVDLLKN---KFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---------~~~~~~~~~~---~~g~~~vi~~~~~~~~~  143 (192)
                      .|++++|+||+|+||..+++.....|++|++.++         +.++.+.+.+   ..+...+.|..+..++.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~   80 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGE   80 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHH
Confidence            4789999999999999999888888999999754         5555544332   33444456666542333

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.16  E-value=0.0011  Score=51.28  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||+|+||..+++.....|++|++++|+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            58899999999999999998888899999999986

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.16  E-value=0.00064  Score=52.63  Aligned_cols=52  Identities=17%  Similarity=0.080  Sum_probs=39.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCee-eecCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDA-FNYKE  138 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~v-i~~~~  138 (192)
                      +|||+||+|.+|..+++.+... |.+|++++|++++.+.+. ..+...+ .|..+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~-~~~v~~~~~D~~d   55 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW-RGKVSVRQLDYFN   55 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG-BTTBEEEECCTTC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh-hCCCEEEEcCCCC
Confidence            5999999999999999887776 889999999988766554 4444332 34444

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.16  E-value=0.00077  Score=50.91  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~  124 (192)
                      .+++++|+||+|++|..+++.....|++|+++ .+++++.+.+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~   46 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDAT   46 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHH
Confidence            47899999999999999998888889999998 5666555444

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.15  E-value=0.00094  Score=51.21  Aligned_cols=42  Identities=19%  Similarity=0.221  Sum_probs=34.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~  124 (192)
                      .|++++|+||+|+||..+++.....|++|+++ .+++++.+.+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~   49 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATA   49 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            57899999999999999998888889999988 5555554444

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.15  E-value=0.00056  Score=52.83  Aligned_cols=40  Identities=18%  Similarity=0.142  Sum_probs=34.1

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      ...|++|||+||+|+||..+++.....|++|+++++++++
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            3468999999999999999998888889999999987653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.14  E-value=0.00074  Score=51.17  Aligned_cols=42  Identities=19%  Similarity=0.162  Sum_probs=35.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.... |++|++++|++++.+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~   45 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA   45 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH
Confidence            478999999999999988876544 889999999999888776

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.14  E-value=0.0012  Score=51.96  Aligned_cols=44  Identities=32%  Similarity=0.343  Sum_probs=38.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ..+.+|||+||+|.+|..+++.+...|++|++++|+.++.+.+.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence            45789999999999999999888888999999999988766554

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.14  E-value=0.0005  Score=53.16  Aligned_cols=37  Identities=16%  Similarity=0.286  Sum_probs=33.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|+++||+||++|||+.+++.....|++|++++|+++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            5899999999999999999988889999999998743

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.13  E-value=0.0022  Score=51.01  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+++++|+||+|+||..+++.....|++|++++|+
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~   38 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRD   38 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCc
Confidence            36899999999999999998888899999998876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.13  E-value=0.0009  Score=51.27  Aligned_cols=44  Identities=9%  Similarity=0.062  Sum_probs=36.3

Q ss_pred             CCCCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           81 PKKGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        81 ~~~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      ...+++|+|+||+  |+||..+++.....|++|++++++++..+.+
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   56 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRI   56 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHH
Confidence            3468999999998  9999999988888899999999886444433

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.12  E-value=0.0012  Score=50.06  Aligned_cols=43  Identities=23%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|+++++ ++++.+.+.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~   46 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVV   46 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            4689999999999999999888888999988876 445555443

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.12  E-value=0.0021  Score=49.77  Aligned_cols=57  Identities=9%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCCee--eecCCc
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSK--EKVDLLKNKFGFDDA--FNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~--~~~~~~~~~~g~~~v--i~~~~~  139 (192)
                      .+++++|+||+  +|||..+++.....|++|+++++++  ++++.++++.+-...  .|..+.
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~   87 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISD   87 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCH
Confidence            58899999988  5699999988888899999999987  666666534443222  344443

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.11  E-value=0.00085  Score=51.57  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=32.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||+++||..+++.....|++|++++++.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   45 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA   45 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            578999999999999999988888899999987654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.10  E-value=0.0028  Score=51.30  Aligned_cols=48  Identities=21%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      -.|++|+|.| .|.+|..+++.+...|++|+++++++++++.+.+++|+
T Consensus       171 L~GktV~V~G-~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga  218 (364)
T 1leh_A          171 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA  218 (364)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC
T ss_pred             CCcCEEEEEC-chHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            4689999999 89999999999999999999999999888766546665

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.10  E-value=0.0012  Score=50.84  Aligned_cols=45  Identities=24%  Similarity=0.273  Sum_probs=36.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      ...+++++|+||+|+||..+++.....|++|+++ .+++++.+.+.
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~   68 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVV   68 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHH
Confidence            3467899999999999999998888889998776 77777666554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.10  E-value=0.0012  Score=49.77  Aligned_cols=41  Identities=27%  Similarity=0.182  Sum_probs=35.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~  123 (192)
                      .+.+|+|+||+|.+|..+++.+...  |++|++++|++++.+.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~   45 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK   45 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh
Confidence            4678999999999999999888877  7899999999876543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.10  E-value=0.00072  Score=51.59  Aligned_cols=38  Identities=16%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++++|+||+|++|..+++.....|++|++++|+.++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchh
Confidence            47899999999999999998888889999999996544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.09  E-value=0.0011  Score=51.71  Aligned_cols=38  Identities=18%  Similarity=0.269  Sum_probs=34.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .|+++||+||+|+||..+++.....|++|+++++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            58899999999999999998888889999999988653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.09  E-value=0.0024  Score=49.40  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=40.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+| +|++|..+++.+...|++|++++|++++.+.+.++++.
T Consensus       118 ~~k~vlViG-aGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~  164 (271)
T 1nyt_A          118 PGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH  164 (271)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGG
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhc
Confidence            588999999 59999999999888999999999999887766545543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.09  E-value=0.0015  Score=51.33  Aligned_cols=89  Identities=17%  Similarity=0.204  Sum_probs=60.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc--ccccH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV--DFVGI  159 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~--d~~g~  159 (192)
                      -.|++|+|+| .|.+|..+++.++.+|++|++.++++++.+.++ ++|.. +++.  . ++.+.+++   ..+  .++..
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~-~~~~--~-~l~~~l~~---aDvVi~~~p~  225 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARIT-EMGLV-PFHT--D-ELKEHVKD---IDICINTIPS  225 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCE-EEEG--G-GHHHHSTT---CSEEEECCSS
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCCe-EEch--h-hHHHHhhC---CCEEEECCCh
Confidence            3689999999 899999999999999999999999998888777 77764 3332  2 34332221   122  33332


Q ss_pred             H-HHHHHHHhhcCCCe-EEEee
Q 029543          160 E-YCRSLLLVLLFRPL-KIMEN  179 (192)
Q Consensus       160 ~-~~~~~~~~l~~~G~-v~~G~  179 (192)
                      . .....++.++++++ +.++.
T Consensus       226 ~~i~~~~~~~mk~g~~lin~a~  247 (300)
T 2rir_A          226 MILNQTVLSSMTPKTLILDLAS  247 (300)
T ss_dssp             CCBCHHHHTTSCTTCEEEECSS
T ss_pred             hhhCHHHHHhCCCCCEEEEEeC
Confidence            1 12346678888884 45554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.08  E-value=0.0016  Score=52.11  Aligned_cols=47  Identities=9%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLA-GC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      -.+.+|||+||+|.+|..+++.+... |. +|++++|++.+.+.+++.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~   67 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEF   67 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHH
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHh
Confidence            35789999999999999999877777 98 9999999988877765344

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.07  E-value=0.00051  Score=52.48  Aligned_cols=41  Identities=20%  Similarity=0.020  Sum_probs=35.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++++|+||+|+||..+++.....|++|++++|++++.+.+.
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   42 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE   42 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            47999999999999999888888999999999887766554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.07  E-value=0.0033  Score=49.43  Aligned_cols=93  Identities=11%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF---GFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      +...+.++++||-.| +|. |..+..+++..|++|++++.+++.++.+++.+   |...-++.... ++.    +. ++.
T Consensus        84 ~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~----~~-~~~  155 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIG-CGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GWE----DF-AEP  155 (318)
T ss_dssp             TTSCCCTTCEEEEES-CTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CGG----GC-CCC
T ss_pred             HhcCCCCcCEEEEEc-ccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-ChH----HC-CCC
Confidence            455678899999999 666 88999999888999999999999988887432   33221111111 211    11 111


Q ss_pred             c---------cccc----HHHHHHHHHhhcCCCeEEE
Q 029543          154 V---------DFVG----IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~---------d~~g----~~~~~~~~~~l~~~G~v~~  177 (192)
                      +         +.++    ...++.+.+.|+|+|++++
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  192 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  192 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            2         2343    2377888899999996544

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.06  E-value=0.00067  Score=51.73  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      -+++++|+||+|+||..+++.....|++|++++|++++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            37899999999999999998888889999999988653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.06  E-value=0.00053  Score=51.72  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+|+||..+++.....|++|++++|+++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~   38 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   38 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            3678999999999999999888888999999998764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.05  E-value=0.001  Score=52.73  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++||+||+|+||..+++.....|++|++++++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            58999999999999999998888889999999987

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.05  E-value=0.0012  Score=51.65  Aligned_cols=42  Identities=10%  Similarity=0.009  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      .|++++|+||+|  +||..+++.....|++|++++++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            588999999887  999999988888899999999997554443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.05  E-value=0.00025  Score=54.44  Aligned_cols=86  Identities=17%  Similarity=-0.010  Sum_probs=59.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCC-eeeecCCcccHHHHHHhhccCCcccc--
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFD-DAFNYKEEPDLDVALKRMFLCWVDFV--  157 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~i~~~~~~g~d~~--  157 (192)
                      .++++||..| +|+ |.++.++++.. +.+|++++.+++.++.++ +.+.. .++..+.. ++     ....+.+|.+  
T Consensus        84 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~d~~-~~-----~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIG-CGE-GYYTHAFADALPEITTFGLDVSKVAIKAAA-KRYPQVTFCVASSH-RL-----PFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEET-CTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHH-HHCTTSEEEECCTT-SC-----SBCTTCEEEEEE
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HhCCCcEEEEcchh-hC-----CCCCCceeEEEE
Confidence            5789999999 787 99999999986 679999999999999998 55443 22222111 11     0111133422  


Q ss_pred             -c-HHHHHHHHHhhcCCCeEE
Q 029543          158 -G-IEYCRSLLLVLLFRPLKI  176 (192)
Q Consensus       158 -g-~~~~~~~~~~l~~~G~v~  176 (192)
                       . ...+..+.+.|+|+|+++
T Consensus       155 ~~~~~~l~~~~~~L~pgG~l~  175 (269)
T 1p91_A          155 IYAPCKAEELARVVKPGGWVI  175 (269)
T ss_dssp             ESCCCCHHHHHHHEEEEEEEE
T ss_pred             eCChhhHHHHHHhcCCCcEEE
Confidence             1 347889999999999543

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.05  E-value=0.00068  Score=51.89  Aligned_cols=43  Identities=9%  Similarity=0.105  Sum_probs=36.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG---CHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G---a~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.+...|   ++|++++|++++.+.++
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~   65 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   65 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHH
Confidence            57899999999999999998888888   89999999976544443

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.04  E-value=0.0007  Score=52.25  Aligned_cols=43  Identities=26%  Similarity=0.251  Sum_probs=36.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+||+|++|..+++.....|++|++++|++++.+.+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~   75 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAE   75 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999877778999999999876555443

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.03  E-value=0.0016  Score=50.28  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      .|+++||+||+|+||..+++.....|++|++++++ .++.+.+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   73 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVV   73 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            58999999999999999998888889999988655 45554443

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.02  E-value=0.00071  Score=51.20  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ..+++++|+||+|+||..+++.....|++|++++|+++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            35789999999999999999888888999999998754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.02  E-value=0.0015  Score=50.05  Aligned_cols=43  Identities=9%  Similarity=0.129  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCch--HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGA--VGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~--iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+|+  ||..+++.....|++|++++|+++..+.++
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   50 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVH   50 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHH
Confidence            4789999999955  999998888888999999998875444443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.01  E-value=0.0016  Score=49.03  Aligned_cols=95  Identities=12%  Similarity=0.011  Sum_probs=63.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL----  151 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~----  151 (192)
                      ..++++||-.| +| .|..+..+++..  +.+|++++.+++..+.+++.   .|...-++.... +..+.+.+...    
T Consensus        70 ~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           70 LTGAKQVLEIG-VF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG-PALATLEQLTQGKPL  146 (232)
T ss_dssp             HHTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHHHHTSSSC
T ss_pred             hcCCCEEEEec-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcCCC
Confidence            34678999999 55 888999999876  46999999999988888733   355332332222 44444433321    


Q ss_pred             CCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +.+     |...   ...++.+.+.|+|+|++++-
T Consensus       147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            223     4332   24788999999999976653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.0014  Score=50.54  Aligned_cols=43  Identities=21%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|+++ .+++++.+.+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~   69 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVA   69 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            58899999999999999998877889998887 44555555443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.01  E-value=0.0027  Score=45.19  Aligned_cols=96  Identities=13%  Similarity=0.096  Sum_probs=63.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCC-eeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNK---FGFD-DAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~---~g~~-~vi~~~~~~~~~~~i~~~~~  151 (192)
                      ....+.++++||-.| +|. |..+..+++.. +.+|++++.+++.++.+++.   .|.+ .+ ....  +..+.+.... 
T Consensus        19 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~--d~~~~~~~~~-   92 (178)
T 3hm2_A           19 SALAPKPHETLWDIG-GGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ--GAPRAFDDVP-   92 (178)
T ss_dssp             HHHCCCTTEEEEEES-TTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC--CTTGGGGGCC-
T ss_pred             HHhcccCCCeEEEeC-CCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec--chHhhhhccC-
Confidence            455788999999999 665 99999999887 45999999999988888732   3544 33 1111  2211222210 


Q ss_pred             CCcccc------c-HHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWVDFV------G-IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~d~~------g-~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +.+|.+      . ...++.+.+.|+|+|++++.
T Consensus        93 ~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~  126 (178)
T 3hm2_A           93 DNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN  126 (178)
T ss_dssp             SCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEE
Confidence            223311      1 34789999999999965443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.01  E-value=0.0017  Score=51.31  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++||+||+|+||..+++.....|++|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            58899999999999999998888889999999876

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.00  E-value=0.00093  Score=50.82  Aligned_cols=94  Identities=18%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      ....+.++++||-.| +|. |.++..+++..  +.+|++++.+++..+.+++.   .|.+.-++.... |+.+    ...
T Consensus        87 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~----~~~  159 (255)
T 3mb5_A           87 AYAGISPGDFIVEAG-VGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-DIYE----GIE  159 (255)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-CGGG----CCC
T ss_pred             HhhCCCCCCEEEEec-CCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-chhh----ccC
Confidence            566888999999999 665 88999999985  45999999999988888743   355431222222 3321    112


Q ss_pred             C-Ccc-----ccc-HHHHHHHHHhhcCCCeEEE
Q 029543          152 C-WVD-----FVG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~-g~d-----~~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      . .+|     ... ...++.+.+.|+|+|++++
T Consensus       160 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~  192 (255)
T 3mb5_A          160 EENVDHVILDLPQPERVVEHAAKALKPGGFFVA  192 (255)
T ss_dssp             CCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEE
T ss_pred             CCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEE
Confidence            2 233     222 3488999999999996543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.00  E-value=0.0029  Score=46.39  Aligned_cols=94  Identities=7%  Similarity=0.016  Sum_probs=61.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHh---cCCCe--eeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNK---FGFDD--AFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~---~g~~~--vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++||-.| +|. |..+..+++... .+|++++.+++.++.+++.   .|.+.  ++..+    +.+.+... 
T Consensus        34 ~~l~~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----~~~~~~~~-  106 (204)
T 3e05_A           34 SKLRLQDDLVMWDIG-AGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF----APEGLDDL-  106 (204)
T ss_dssp             HHTTCCTTCEEEEET-CTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC----TTTTCTTS-
T ss_pred             HHcCCCCCCEEEEEC-CCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC----hhhhhhcC-
Confidence            556788999999999 664 889999998863 5999999999998888732   34432  22221    11111111 


Q ss_pred             cCCc-----ccc-c--HHHHHHHHHhhcCCCeEEEe
Q 029543          151 LCWV-----DFV-G--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 ~~g~-----d~~-g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                       +.+     +.. .  ...++.+.+.|+|+|++++.
T Consensus       107 -~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  141 (204)
T 3e05_A          107 -PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN  141 (204)
T ss_dssp             -CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             -CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence             112     222 1  34788899999999965443

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.99  E-value=0.0012  Score=50.40  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+|+||..+++.....|++|++++|+++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4789999999999999999888888999999998865

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.98  E-value=0.00075  Score=46.41  Aligned_cols=47  Identities=19%  Similarity=0.193  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .+++|+|+| +|.+|..+++.++..|.+|+++++++++.+.++ +.+..
T Consensus         5 ~~~~v~I~G-~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-~~~~~   51 (144)
T 2hmt_A            5 KNKQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATH   51 (144)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-TTCSE
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCE
Confidence            356799999 599999999999999999999999998888776 55653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.98  E-value=0.00052  Score=52.25  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=33.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   51 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   51 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            47899999999999999998888889999999987643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.97  E-value=0.0017  Score=50.70  Aligned_cols=43  Identities=9%  Similarity=0.069  Sum_probs=35.4

Q ss_pred             CCCCEEEEeCCCch--HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           82 KKGEYVYVSAASGA--VGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~--iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      -.|++++|+||+|+  ||..+++.....|++|++++|+++..+.+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   73 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRV   73 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            36899999999965  99999988888899999999986544433

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.97  E-value=0.0032  Score=49.15  Aligned_cols=42  Identities=21%  Similarity=0.143  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|.| +|++|..++..++..|+ +|+++.|+.+|.+.+.
T Consensus       121 ~~k~vlvlG-aGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La  163 (282)
T 3fbt_A          121 KNNICVVLG-SGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY  163 (282)
T ss_dssp             TTSEEEEEC-SSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            588999999 79999999988888999 9999999999887765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.95  E-value=0.0022  Score=47.87  Aligned_cols=96  Identities=10%  Similarity=-0.029  Sum_probs=62.8

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc--
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL--  151 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~--  151 (192)
                      ....++++||-.| +| .|..+..+++..  +.+|++++.+++..+.+++.   .|.+.-+..... +..+.+.+...  
T Consensus        65 ~~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~~~~~~~~  141 (229)
T 2avd_A           65 ARLIQAKKALDLG-TF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDELLAAG  141 (229)
T ss_dssp             HHHTTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHTT
T ss_pred             HHhcCCCEEEEEc-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc-CHHHHHHHHHhcC
Confidence            3445788999999 55 788999999876  46999999999988888743   254322222222 44443333221  


Q ss_pred             --CCc-----cccc---HHHHHHHHHhhcCCCeEEE
Q 029543          152 --CWV-----DFVG---IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 --~g~-----d~~g---~~~~~~~~~~l~~~G~v~~  177 (192)
                        +.+     |..-   ...++.+.+.|+|+|++++
T Consensus       142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~  177 (229)
T 2avd_A          142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV  177 (229)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence              223     3322   2478899999999997655

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.95  E-value=0.00064  Score=52.04  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=33.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+|+||..+++.....|++|++++|+++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4789999999999999999888888999999998754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.94  E-value=0.00095  Score=51.34  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .++++||+||+|+||..+++.....|++|++++|+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   43 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP   43 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            4789999999999999999888888999999998754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.94  E-value=0.0011  Score=50.01  Aligned_cols=100  Identities=17%  Similarity=0.069  Sum_probs=63.9

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhh
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      ..+ +...+.++++||..| +| .|..+..+++..+.+|++++.+++..+.+++.   .|.+.+ ..... +...   ..
T Consensus        82 ~~~-~~l~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~---~~  153 (235)
T 1jg1_A           82 IML-EIANLKPGMNILEVG-TG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILG-DGSK---GF  153 (235)
T ss_dssp             HHH-HHHTCCTTCCEEEEC-CT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEES-CGGG---CC
T ss_pred             HHH-HhcCCCCCCEEEEEe-CC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEC-Cccc---CC
Confidence            344 556788999999999 66 79999999998778999999999988888743   344332 21111 2211   11


Q ss_pred             ccC-Cccc-----ccHHHHHHHHHhhcCCCeEEEeeC
Q 029543          150 FLC-WVDF-----VGIEYCRSLLLVLLFRPLKIMEND  180 (192)
Q Consensus       150 ~~~-g~d~-----~g~~~~~~~~~~l~~~G~v~~G~~  180 (192)
                      ..+ .+|.     .-......+.+.|+|+|++++...
T Consensus       154 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          154 PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEe
Confidence            111 1332     112344578899999996655443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.00091  Score=51.38  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .++++||+||+|+||..+++.....|++|++++|+.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            5789999999999999999888888999999998754

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.94  E-value=0.00097  Score=51.55  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++++|+||+++||..+++.....|++|++++|+++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            4789999999999999999888888999999999864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.93  E-value=0.0029  Score=48.39  Aligned_cols=37  Identities=27%  Similarity=0.259  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++++|+||+  +++|..+++.....|++|++++++.+
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            58899999999  89999998888888999999988743

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.93  E-value=0.0018  Score=49.18  Aligned_cols=44  Identities=23%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      -.+++++|+||+++||..+++.....|++|+++ .+++++.+.+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~   49 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETV   49 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH
Confidence            358899999999999999998888889998885 55555554443

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.93  E-value=0.0015  Score=49.92  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .++++||+||+++||..+++.....|++|++++++.+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   44 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE   44 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH
Confidence            4789999999999999999888888999999998654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.93  E-value=0.0012  Score=49.60  Aligned_cols=96  Identities=7%  Similarity=0.029  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhc-cCCc
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMF-LCWV  154 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~-~~g~  154 (192)
                      ...++++||-.| +| .|..+..+++.. +.+|++++.+++.++.+++.   .|...-+..... +..+.+.... .+.+
T Consensus        51 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~f  127 (233)
T 2gpy_A           51 KMAAPARILEIG-TA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG-DALQLGEKLELYPLF  127 (233)
T ss_dssp             HHHCCSEEEEEC-CT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CGGGSHHHHTTSCCE
T ss_pred             hccCCCEEEEec-CC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-CHHHHHHhcccCCCc
Confidence            445789999999 66 788999999987 56999999999998888743   254321221122 2222222221 1223


Q ss_pred             c-----ccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          155 D-----FVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 d-----~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      |     ..-   ...++.+.+.|+|+|++++.
T Consensus       128 D~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          128 DVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            2     221   34778889999999976553

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.91  E-value=0.0045  Score=51.13  Aligned_cols=59  Identities=17%  Similarity=0.130  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           70 TAFAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        70 ta~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      ..+.++.+... .-.|++|+|.| .|.+|..+++.++.+|++|+++++++.+...+. ..|.
T Consensus       196 slldgi~ratg~~L~GktVgIiG-~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~  255 (436)
T 3h9u_A          196 SLVDGIKRATDVMIAGKTACVCG-YGDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGY  255 (436)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTC
T ss_pred             HHHHHHHHhcCCcccCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCC
Confidence            34445544333 33699999999 999999999999999999999999988777666 6665

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.90  E-value=0.0037  Score=52.09  Aligned_cols=62  Identities=16%  Similarity=0.270  Sum_probs=42.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHhcCCCe-eeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE--KVDLLKNKFGFDD-AFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~--~~~~~~~~~g~~~-vi~~~~~~~~~~  144 (192)
                      .+++++|+||+|+||..+++.....|++|+++++++.  +++.+.++.+... ..|..+.+++.+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~  276 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDK  276 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHH
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHH
Confidence            5789999999999999999877788999999998643  3333332555543 245554423433

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.90  E-value=0.0021  Score=50.27  Aligned_cols=35  Identities=14%  Similarity=0.115  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++||+||+|+||..+++.....|++|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999998888889999999886

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.89  E-value=0.0042  Score=42.34  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=39.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +.+|+|+| +|.+|..+++.++..|.+|+++++++++.+.++++++..
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~   50 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL   50 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE
Confidence            35799999 699999999888888999999999999888877345654

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.89  E-value=0.0013  Score=49.96  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+++++|+||+|+||..+++.....|++|++++|+++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            4789999999999999999888888999999998754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.89  E-value=0.013  Score=43.83  Aligned_cols=98  Identities=7%  Similarity=-0.085  Sum_probs=63.9

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCC-eeeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFD-DAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~-~vi~~~~~~~~~~~i~~~~  150 (192)
                      ...+.+++.+||=.|  .+.|..+..+++..  +.+|++++.+++..+.+++.   .|.. .-+..... +..+.+....
T Consensus        50 ~~~~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g-da~~~l~~~~  126 (221)
T 3dr5_A           50 ATTNGNGSTGAIAIT--PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS-RPLDVMSRLA  126 (221)
T ss_dssp             HHSCCTTCCEEEEES--TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-CHHHHGGGSC
T ss_pred             HhhCCCCCCCEEEEc--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc-CHHHHHHHhc
Confidence            333444556999998  35688888999876  57999999999988888743   3554 22333333 4554443332


Q ss_pred             cCCc-----cccc---HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWV-----DFVG---IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+.+     |..-   ...++.+.+.|+|||++++
T Consensus       127 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          127 NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence            2233     3322   2378899999999997665

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.88  E-value=0.004  Score=46.23  Aligned_cols=96  Identities=14%  Similarity=0.008  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc---
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL---  151 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~---  151 (192)
                      ...++++||-.| +| .|..+..+++..  +.+|++++.+++.++.+++.   .|.+.-+..... +..+.+.....   
T Consensus        55 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  131 (223)
T 3duw_A           55 QIQGARNILEIG-TL-GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG-LALDSLQQIENEKY  131 (223)
T ss_dssp             HHHTCSEEEEEC-CT-TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHTTC
T ss_pred             HhhCCCEEEEec-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcCC
Confidence            345788999998 44 688888888876  56999999999988887733   355432222222 44443333211   


Q ss_pred             CCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +.+     |..-   ...++.+.+.|+|+|++++.
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence            123     3322   24788899999999976654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.88  E-value=0.00089  Score=51.63  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++++|+||+|+||..+++.....|++|++++|+.+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999888888999999998754

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.88  E-value=0.0011  Score=50.49  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=31.7

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEK  120 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~  120 (192)
                      ..++++|||+||+|++|..+++.....|++|++++ ++.++
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~   50 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPR   50 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            34689999999999999999988888899999887 44443

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.88  E-value=0.0023  Score=49.20  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=34.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDLL  124 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~~  124 (192)
                      .+++++|+||+|+||..+++.....|++|++++ ++.++.+.+
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~   66 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTW   66 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence            578999999999999999988888899999998 555554443

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.86  E-value=0.0021  Score=48.84  Aligned_cols=43  Identities=19%  Similarity=0.073  Sum_probs=35.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCH--HHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSK--EKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~--~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++ |++++|++  +..+.++
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~   49 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELK   49 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHH
Confidence            4789999999999999999888888995 99999886  4455555

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.84  E-value=0.0032  Score=47.43  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhc----
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMF----  150 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~----  150 (192)
                      ...++++||-.| +| .|..+..+++..  +.+|++++.+++..+.+++.   .|.+.-+..... +..+.+.+..    
T Consensus        57 ~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           57 KISGAKRIIEIG-TF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG-SALETLQVLIDSKS  133 (239)
T ss_dssp             HHHTCSEEEEEC-CT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHCSS
T ss_pred             HhhCcCEEEEEe-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHHHHHHHhhcc
Confidence            445789999999 56 699999999987  56999999999988888743   355432222222 4443333221    


Q ss_pred             ----------c-CCc-----ccccH---HHHHHHHHhhcCCCeEEEe
Q 029543          151 ----------L-CWV-----DFVGI---EYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 ----------~-~g~-----d~~g~---~~~~~~~~~l~~~G~v~~G  178 (192)
                                . +.+     +..-.   ..++.+.+.|+|+|++++-
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                      1 223     32222   4778899999999976553

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.84  E-value=0.0013  Score=48.84  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      +|+|+||+|.+|..+++.+...|++|++++|++++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   38 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP   38 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh
Confidence            6999999999999999988888999999999987543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.83  E-value=0.0023  Score=46.57  Aligned_cols=38  Identities=18%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      .+|+|+||+|.+|..+++.+...|.+|++++|++++.+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~   41 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc
Confidence            68999999999999999888888999999999987643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.83  E-value=0.0014  Score=49.19  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +++++|+||+|++|..+++.....|++|++++|+++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc
Confidence            578999999999999999887778999999998753

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.83  E-value=0.0026  Score=54.94  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---------CHHHHHHHHH---hcCCCeeeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---------SKEKVDLLKN---KFGFDDAFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---------~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i  146 (192)
                      .|++++|+||+++||..+++.....|++|+++++         +.++.+.+.+   +.+...+.|..+..+..+.+
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~   93 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVI   93 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHH
Confidence            5889999999999999999888888999999987         4444444332   34555566665542444333

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.82  E-value=0.0057  Score=47.75  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ..+++++|+| +|++|..++..+...|+ +|++++|+.+|.+.+.+++
T Consensus       125 l~~k~vlVlG-aGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            3588999999 69999999988888999 8999999999887765344

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.81  E-value=0.0013  Score=49.93  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++++|+||+|+||..+++.....|++|++++|+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~   36 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            47999999999999999888888999999998753

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.80  E-value=0.0046  Score=53.38  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||++|||..+++.....|++|++.+++.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~   42 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGG   42 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            478999999999999999988888999999998754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.78  E-value=0.0032  Score=48.89  Aligned_cols=54  Identities=20%  Similarity=0.132  Sum_probs=39.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHH--HHHHHhcCCCee-eecCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKV--DLLKNKFGFDDA-FNYKE  138 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~--~~~~~~~g~~~v-i~~~~  138 (192)
                      ..+|+|+||+|.+|..+++.+...| .+|++++|++++.  +.+. ..++..+ .|..+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~-~~~~~~~~~D~~d   62 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELR-LQGAEVVQGDQDD   62 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHH-HTTCEEEECCTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHH-HCCCEEEEecCCC
Confidence            4689999999999999998777778 8999999987653  3333 4455432 34443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.0017  Score=48.32  Aligned_cols=37  Identities=27%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV  121 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~  121 (192)
                      .+|+|+||+|.+|..+++.+...|.+|++++|++++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            5899999999999999999888999999999997754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.78  E-value=0.0015  Score=49.14  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~  122 (192)
                      .+.+|+|+||+|++|..+++.+...|+  +|++++|++++.+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~   58 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD   58 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc
Confidence            367899999999999999988888899  9999999876543

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.78  E-value=0.0032  Score=48.28  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++. .+++++.+.+.
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~   68 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETL   68 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH
Confidence            47899999999999999998888899988664 56665555443

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.77  E-value=0.0019  Score=51.00  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++|||+||+|.||..+++.+...|++|++++|++++
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   41 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTN   41 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            46889999999999999998888889999999988763

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.76  E-value=0.003  Score=48.19  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=34.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK-EKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~-~~~~~~~  125 (192)
                      .+++++|+||+|+||..+++.....|++|++++++. +..+.++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~   49 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMK   49 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence            468999999999999999988888899999987664 4444444

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.72  E-value=0.0017  Score=49.02  Aligned_cols=35  Identities=14%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++|||+||+|++|..+++.+...|++|++++|+++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            47999999999999999887778999999998753

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.71  E-value=0.0039  Score=51.34  Aligned_cols=41  Identities=22%  Similarity=0.105  Sum_probs=33.8

Q ss_pred             hCC-CCCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHH
Q 029543           79 CSP-KKGEYVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKE  119 (192)
Q Consensus        79 ~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~  119 (192)
                      .++ +.++++||+||++|||+.+++.+.. .|++|++++++.+
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~   97 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKP   97 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCch
Confidence            345 3578999999999999988877666 8999999988754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.71  E-value=0.0022  Score=47.33  Aligned_cols=97  Identities=21%  Similarity=0.158  Sum_probs=61.4

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      +...+.++++||..| +| .|..+..+++..+  .+|++++.+++.++.+++.   .+.+.+ ..... +..+....  .
T Consensus        71 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~~~~--~  144 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIG-TG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNV-IVIVG-DGTLGYEP--L  144 (215)
T ss_dssp             HHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEES-CGGGCCGG--G
T ss_pred             HhhCCCCCCEEEEEC-CC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEEC-CcccCCCC--C
Confidence            556788999999999 66 5999999999886  7999999999988888743   344332 11111 22111110  1


Q ss_pred             CCccc-----ccHHHHHHHHHhhcCCCeEEEee
Q 029543          152 CWVDF-----VGIEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       152 ~g~d~-----~g~~~~~~~~~~l~~~G~v~~G~  179 (192)
                      +.+|.     +-....+.+.+.|+|+|++++-.
T Consensus       145 ~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCeeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            12332     11234467889999999654433

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.70  E-value=0.0017  Score=51.18  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      ..+++.+|||+||+|.+|..+++.+...|.+|++++|++++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   50 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS   50 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            45688999999999999999998888889999999987653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.69  E-value=0.0023  Score=46.38  Aligned_cols=38  Identities=13%  Similarity=0.026  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcC----------CEEEEEeCCHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAG----------CHVVGSAGSKE  119 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G----------a~Vi~~~~~~~  119 (192)
                      .+.++++||-.| +|+ |.++..+++..+          .+|++++.++.
T Consensus        19 ~~~~~~~vLDlG-cG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           19 ILRPGLRVLDCG-AAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCCTTCEEEEET-CCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCCEEEEeC-CCC-CHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            367899999999 787 999999999876          78999999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.67  E-value=0.0088  Score=46.94  Aligned_cols=47  Identities=13%  Similarity=0.025  Sum_probs=40.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+++++|+| +|++|..++..+...|+ +|++++|+++|.+.+.++++.
T Consensus       140 ~~~~vlVlG-aGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~  187 (297)
T 2egg_A          140 DGKRILVIG-AGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE  187 (297)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS
T ss_pred             CCCEEEEEC-cHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            588999999 79999999998888998 999999999988776646655

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.65  E-value=0.0026  Score=48.17  Aligned_cols=95  Identities=13%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc----CCCeeeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKF----GFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++||-.| +|. |.++..+++..  +.+|++++.+++.++.+++.+    |.+.+ +.... ++.+.  ...
T Consensus        90 ~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v-~~~~~-d~~~~--~~~  163 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAG-TGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENV-RFHLG-KLEEA--ELE  163 (258)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCE-EEEES-CGGGC--CCC
T ss_pred             HHcCCCCCCEEEEEC-CCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCE-EEEEC-chhhc--CCC
Confidence            556788999999999 675 99999999985  469999999999998888432    63322 11111 22111  011


Q ss_pred             cCCccc-----cc-HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWVDF-----VG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~d~-----~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+.+|.     -. ...+..+.+.|+++|++++
T Consensus       164 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~  196 (258)
T 2pwy_A          164 EAAYDGVALDLMEPWKVLEKAALALKPDRFLVA  196 (258)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEE
T ss_pred             CCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEE
Confidence            112332     22 2578888999999996544

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.64  E-value=0.0087  Score=48.97  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=33.4

Q ss_pred             hCC-CCCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHH
Q 029543           79 CSP-KKGEYVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKE  119 (192)
Q Consensus        79 ~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~  119 (192)
                      ..+ ..++++||+||++|||+.+++.+.. .|++|++++++.+
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~   83 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERP   83 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCch
Confidence            344 4578899999999999988877766 8999999987643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.63  E-value=0.0049  Score=45.74  Aligned_cols=95  Identities=13%  Similarity=0.022  Sum_probs=61.3

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL----  151 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~----  151 (192)
                      ..++++||-.| +| .|..+..+++..  +.+|++++.+++.++.+++.   .|...-+..... +..+.+.....    
T Consensus        62 ~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           62 LMQAKKVIDIG-TF-TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS-PAKDTLAELIHAGQA  138 (225)
T ss_dssp             HHTCSEEEEEC-CT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHTTTCT
T ss_pred             hhCCCEEEEeC-Cc-chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC-CHHHHHHHhhhccCC
Confidence            44678999998 45 488888888876  46999999999988888743   355432222222 44444333221    


Q ss_pred             CCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +.+     |..-   ...++.+.+.|+|+|++++.
T Consensus       139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          139 WQYDLIYIDADKANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            223     3332   23788899999999976553

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.62  E-value=0.0022  Score=50.61  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +.+|||+||+|.+|..+++.+...|++|++++|++++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   39 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE   39 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            6789999999999999998887789999999998654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.62  E-value=0.0021  Score=50.79  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+.+|||+||+|.||..+++.+...|++|++++|+.++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            46789999999999999998888889999999987543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.62  E-value=0.0017  Score=48.89  Aligned_cols=41  Identities=15%  Similarity=-0.016  Sum_probs=35.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLL  124 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~  124 (192)
                      ..+|||+||+|++|..+++.+...| ++|++++|++++.+.+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~   64 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP   64 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc
Confidence            4689999999999999999888889 7999999998765443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.61  E-value=0.0062  Score=47.15  Aligned_cols=45  Identities=18%  Similarity=0.097  Sum_probs=38.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .+++++|+| +|++|..++..+...|++|+++.|+.+|.+.+.+++
T Consensus       118 ~~~~vlvlG-aGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~  162 (272)
T 1p77_A          118 PNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERF  162 (272)
T ss_dssp             TTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc
Confidence            578999999 699999988888888999999999998877765444

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.60  E-value=0.003  Score=49.36  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~  118 (192)
                      |++|||+||+|.||..+++.+...|++|++++| ++
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   36 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADP   36 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC-
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCc
Confidence            578999999999999999888888999999988 54

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.57  E-value=0.0012  Score=50.82  Aligned_cols=45  Identities=24%  Similarity=0.326  Sum_probs=37.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|+|+||+|.+|..+++.+...  |.+|++++|++++.+.+. ..+..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~-~~~~~   48 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA-DQGVE   48 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH-HTTCE
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh-hcCCe
Confidence            5999999999999999877777  889999999988776665 44543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.56  E-value=0.0054  Score=47.64  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      ..+|+|+||+|.+|..+++.+...|.+|++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~   37 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRE   37 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECC
Confidence            4679999999999999998888889999999997

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.56  E-value=0.0013  Score=49.13  Aligned_cols=53  Identities=13%  Similarity=0.109  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-------HHHHHHHHhcC-CCeeee
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK-------EKVDLLKNKFG-FDDAFN  135 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~-------~~~~~~~~~~g-~~~vi~  135 (192)
                      .+++++|+||+|+||..+++.....|++|++++|++       +..+.+.+++| .|.+|+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~   65 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIV   65 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEE
Confidence            478999999999999999988878899999998763       23333333554 455555

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.56  E-value=0.0026  Score=46.43  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +++|+||+|++|..+++.+. .|++|++++|+
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~   35 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRH   35 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESS
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecC
Confidence            79999999999999998777 89999999886

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.55  E-value=0.0088  Score=46.42  Aligned_cols=46  Identities=17%  Similarity=0.071  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+| +|++|..++..+...|+ +|+++.|+.+|.+.+.++++
T Consensus       119 ~~k~~lvlG-aGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  165 (272)
T 3pwz_A          119 RNRRVLLLG-AGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELD  165 (272)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            588999999 79999999988888997 99999999999887764554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.55  E-value=0.0077  Score=46.41  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      ....+.++++||-.| +|. |.++..+++..  +.+|++++.+++.++.+++.   .+...-+..... ++.+.   ...
T Consensus       106 ~~~~~~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~---~~~  179 (277)
T 1o54_A          106 MMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DISEG---FDE  179 (277)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CGGGC---CSC
T ss_pred             HHhCCCCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHc---ccC
Confidence            556788999999999 676 99999999985  45999999999998888743   254211221112 22211   111


Q ss_pred             CCcc-----ccc-HHHHHHHHHhhcCCCeEEE
Q 029543          152 CWVD-----FVG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~g~d-----~~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      +.+|     .-. ...+..+.+.|+|+|++++
T Consensus       180 ~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (277)
T 1o54_A          180 KDVDALFLDVPDPWNYIDKCWEALKGGGRFAT  211 (277)
T ss_dssp             CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEE
T ss_pred             CccCEEEECCcCHHHHHHHHHHHcCCCCEEEE
Confidence            1233     222 2578888889999996544

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.55  E-value=0.011  Score=46.82  Aligned_cols=44  Identities=14%  Similarity=0.139  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC---HHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGS---KEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~---~~~~~~~~~~  127 (192)
                      .|++++|+| +|++|..++..+...|+ +|+++.|+   .++.+.+.++
T Consensus       153 ~gk~~lVlG-aGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~  200 (315)
T 3tnl_A          153 IGKKMTICG-AGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEK  200 (315)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHH
T ss_pred             cCCEEEEEC-CChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHH
Confidence            588999999 69999999988888999 89999999   7777666534

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.54  E-value=0.0019  Score=50.99  Aligned_cols=41  Identities=20%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      -+|||+||+|.+|..+++.+...|.+|++++|++++.+.+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~   54 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA   54 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc
Confidence            37999999999999999888888999999999876554443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.54  E-value=0.0079  Score=46.90  Aligned_cols=38  Identities=21%  Similarity=0.123  Sum_probs=32.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      .+|||+||+|.+|..+++.+...|.+|++++|++.+.+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   40 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA   40 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc
Confidence            68999999999999999988888999999999854433

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.54  E-value=0.0053  Score=47.38  Aligned_cols=57  Identities=14%  Similarity=0.126  Sum_probs=41.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHhcCCCeeeecC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK------EKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~------~~~~~~~~~~g~~~vi~~~  137 (192)
                      ..+-.+|||+||+|.+|..+++.+...|.+|++++|+.      +.++.+.+..++|.+|+..
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A   71 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCA   71 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence            34678999999999999999988888899999998752      2333332144788888754

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.54  E-value=0.0013  Score=50.52  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|+|+||+|.+|..+++.+...  |.+|++++|++++.+.+. ..+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~-~~~~~   47 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA-AQGIT   47 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH-HTTCE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh-cCCCe
Confidence            4899999999999999887777  889999999988766665 44543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.53  E-value=0.01  Score=46.29  Aligned_cols=46  Identities=13%  Similarity=0.060  Sum_probs=39.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+| +|++|..++..+...|+ +|+++.|++++.+.+.++++
T Consensus       125 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~  171 (281)
T 3o8q_A          125 KGATILLIG-AGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA  171 (281)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence            588999999 69999999988888997 99999999998777664443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.52  E-value=0.0033  Score=48.87  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +.+|+|+||+|.+|..+++.+...|.+|++++|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            45799999999999999988877899999999986

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.52  E-value=0.0098  Score=45.84  Aligned_cols=93  Identities=12%  Similarity=0.019  Sum_probs=60.9

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF---GFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      +..++.++++||-.| +|. |..+..+++..|++|++++.+++.++.+++.+   |...-++.... ++.    +.. +.
T Consensus        58 ~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~----~~~-~~  129 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVG-CGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GWE----QFD-EP  129 (287)
T ss_dssp             TTTTCCTTCEEEEET-CTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CGG----GCC-CC
T ss_pred             HHcCCCCcCEEEEEC-Ccc-cHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-Chh----hCC-CC
Confidence            455678899999999 554 88888999878999999999999888887432   33211111111 221    111 11


Q ss_pred             c---------cccc----HHHHHHHHHhhcCCCeEEE
Q 029543          154 V---------DFVG----IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~---------d~~g----~~~~~~~~~~l~~~G~v~~  177 (192)
                      +         +.++    ...++.+.+.|+|+|++++
T Consensus       130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  166 (287)
T 1kpg_A          130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  166 (287)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence            2         2332    2478888999999996543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.49  E-value=0.0031  Score=49.29  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +.+|||+||+|.+|..+++.+...|.+|++++|+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            568999999999999999888888999999997654

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.47  E-value=0.0011  Score=51.02  Aligned_cols=37  Identities=14%  Similarity=0.053  Sum_probs=32.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +++|+|+||+|+||..+++.+...|++|++++|++.+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~   39 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD   39 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcc
Confidence            5689999999999999998888889999999988643

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.47  E-value=0.014  Score=49.36  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKE  119 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~  119 (192)
                      .+++++++||+||+|+||..+++.....|+ +|+.++|+..
T Consensus       255 ~~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          255 SWQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            356889999999999999999988888899 7999998863

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.46  E-value=0.0043  Score=45.32  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      ++++|+||+|++|..+++.+...  +|++++|++++.+.+.++++.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~   44 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA   44 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC
Confidence            36999999999999888765554  999999999888777644543

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.46  E-value=0.0045  Score=47.67  Aligned_cols=52  Identities=10%  Similarity=0.085  Sum_probs=40.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHhcCCCeeeecC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK------EKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~------~~~~~~~~~~g~~~vi~~~  137 (192)
                      +|||+||+|.+|..+++.+...|.+|++++|.+      +.++.+.++.+.|.+|+..
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a   64 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCA   64 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECC
Confidence            799999999999999988888899999998742      3333333255788888754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.45  E-value=0.0055  Score=47.12  Aligned_cols=45  Identities=9%  Similarity=0.283  Sum_probs=38.9

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .+|||+|| |.+|..+++.+...|.+|++++|++++.+.+. ..+..
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~   50 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAE   50 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEE
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCe
Confidence            57999997 99999999988888999999999999888776 55543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.45  E-value=0.0052  Score=48.12  Aligned_cols=35  Identities=11%  Similarity=0.052  Sum_probs=31.3

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..+|+|+||+|.+|..+++.+...|.+|++++|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            35799999999999999988888899999999985

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.45  E-value=0.0024  Score=48.31  Aligned_cols=92  Identities=8%  Similarity=-0.136  Sum_probs=58.0

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCCcccHHHHHHhhccCCc----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD--AFNYKEEPDLDVALKRMFLCWV----  154 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~i~~~~~~g~----  154 (192)
                      ..+|.+||-+| +| .|..+..+++..+.++++++.+++-++.++ +.....  -+..... +..+.......+.+    
T Consensus        58 ~~~G~rVLdiG-~G-~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~-~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           58 SSKGGRVLEVG-FG-MAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKG-LWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTTCEEEEEEC-CT-TSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEES-CHHHHGGGSCTTCEEEEE
T ss_pred             ccCCCeEEEEC-CC-ccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEee-hHHhhcccccccCCceEE
Confidence            36899999999 55 588888888876779999999999999888 432211  1111112 34433333222222    


Q ss_pred             -cccc-----------HHHHHHHHHhhcCCCeEE
Q 029543          155 -DFVG-----------IEYCRSLLLVLLFRPLKI  176 (192)
Q Consensus       155 -d~~g-----------~~~~~~~~~~l~~~G~v~  176 (192)
                       |.+-           ...++.+.+.|||||++.
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~  167 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT  167 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEE
Confidence             3221           125677889999999654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.43  E-value=0.0021  Score=50.91  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ..+.+|||+||+|.+|..+++.+...|++|++++|+++
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            35678999999999999999988888999999998764

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.42  E-value=0.0039  Score=49.17  Aligned_cols=36  Identities=17%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +++|||+||+|.||..+++.+...|++|++++|+++
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            689999999999999999888888999999888765

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.42  E-value=0.0038  Score=48.85  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ..+-.+|||+||+|.+|..+++.+...|++|++++|+++
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   47 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE   47 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            345688999999999999999888888999999998754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.39  E-value=0.014  Score=44.04  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=61.1

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhc-----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMF-----  150 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~-----  150 (192)
                      ..++++||-+| + +.|..+..+++..  +.+|++++.+++..+.+++.   .|.+.-+..... +..+.+....     
T Consensus        68 ~~~~~~VLeiG-~-G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~l~~~~~~  144 (237)
T 3c3y_A           68 LVNAKKTIEVG-V-FTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES-DAMLALDNLLQGQES  144 (237)
T ss_dssp             HTTCCEEEEEC-C-TTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHSTTC
T ss_pred             hhCCCEEEEeC-C-CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhccCC
Confidence            45678999998 3 4577888888876  56999999999988888743   355432222222 3443333221     


Q ss_pred             cCCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          151 LCWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 ~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      .+.+     |..-   ...++.+.+.|+|||++++-
T Consensus       145 ~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          145 EGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            1223     3322   24788899999999976654

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.37  E-value=0.016  Score=47.78  Aligned_cols=40  Identities=15%  Similarity=0.119  Sum_probs=31.3

Q ss_pred             hCCCCCCEEEEeCCCchHHHH--HHHHHHHcCCEEEEEeCCH
Q 029543           79 CSPKKGEYVYVSAASGAVGQL--VGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~--~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .++..|+++||+||++|||+.  .++.....|++|++++++.
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~   96 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYET   96 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence            345678999999999999997  4444444599999998853

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.37  E-value=0.0039  Score=49.61  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDL  123 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~  123 (192)
                      .+.+|||+||+|.+|..+++.+...|++|++++|++++.+.
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   48 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS   48 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccch
Confidence            36789999999999999998888889999999998755433

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.37  E-value=0.018  Score=41.12  Aligned_cols=96  Identities=20%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ....+.++++||-.| +|. |..+..+++.. .+|++++.+++..+.+++.   .+...-++.... ++.+.+...  +.
T Consensus        27 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~--~~  100 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVG-CGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-DAPEALCKI--PD  100 (192)
T ss_dssp             HHHCCCTTCEEEEES-CTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-CHHHHHTTS--CC
T ss_pred             HhcCCCCCCEEEEEC-CCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-CHHHhcccC--CC
Confidence            455788999999999 666 88888888765 8999999999988888742   344111222222 444433221  12


Q ss_pred             cc-----cc-c--HHHHHHHHHhhcCCCeEEEe
Q 029543          154 VD-----FV-G--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       154 ~d-----~~-g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +|     .. .  ...++.+.+.|+++|++++.
T Consensus       101 ~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~  133 (192)
T 1l3i_A          101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT  133 (192)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCEEEECCchHHHHHHHHHHHHhcCCCcEEEEE
Confidence            22     21 1  34778888999999965443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.35  E-value=0.029  Score=42.60  Aligned_cols=94  Identities=14%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhc-----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMF-----  150 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~-----  150 (192)
                      ..++++||-.| + +.|..++.+++..  +.+|++++.+++..+.+++.   .|.+.-+..... +..+.+....     
T Consensus        77 ~~~~~~VLeiG-~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~l~~~~~~  153 (247)
T 1sui_A           77 LINAKNTMEIG-V-YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLDEMIKDEKN  153 (247)
T ss_dssp             HTTCCEEEEEC-C-GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHSGGG
T ss_pred             hhCcCEEEEeC-C-CcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHHHHHHHhccCC
Confidence            34678999998 3 4688888888886  57999999999988888742   355322222222 3433333221     


Q ss_pred             cCCc-----cccc---HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWV-----DFVG---IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+.+     |..-   ...++.+.+.|+|||++++
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  188 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY  188 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEE
Confidence            1223     3321   3478889999999997655

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.34  E-value=0.018  Score=45.63  Aligned_cols=45  Identities=16%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC---HHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGS---KEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~---~~~~~~~~~~~  128 (192)
                      .+++++|+| +|++|..++..+...|+ +|+++.|+   .+|.+.+.+++
T Consensus       147 ~gk~~lVlG-AGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~  195 (312)
T 3t4e_A          147 RGKTMVLLG-AGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRV  195 (312)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHh
Confidence            588999999 69999999988888999 89999999   77766655333

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.33  E-value=0.0037  Score=49.36  Aligned_cols=37  Identities=8%  Similarity=0.096  Sum_probs=32.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+.+|||+||+|.+|..+++.+...|++|++++|+..
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT   55 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4678999999999999999888888999999998644

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.33  E-value=0.0063  Score=50.82  Aligned_cols=40  Identities=10%  Similarity=0.057  Sum_probs=33.6

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLA---GCHVVGSAGSKEKV  121 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~---Ga~Vi~~~~~~~~~  121 (192)
                      ..+.+|||+||+|.+|..+++.....   |.+|++++|++++.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~  113 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE  113 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH
Confidence            46889999999999999888766666   89999999986543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.32  E-value=0.012  Score=45.65  Aligned_cols=49  Identities=22%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+..+.+++|.| +|+.|..++..++..|+ +|+++.|+.+|.+.+.++++
T Consensus       115 ~~~~~~~vlvlG-aGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~  164 (271)
T 1npy_A          115 HLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG  164 (271)
T ss_dssp             TCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            344678999999 89999999988888898 89999999988777654555

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.30  E-value=0.0065  Score=47.55  Aligned_cols=54  Identities=15%  Similarity=0.103  Sum_probs=39.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHH--HhcCCCee-eecCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE-KVDLLK--NKFGFDDA-FNYKE  138 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~--~~~g~~~v-i~~~~  138 (192)
                      .+|+|+||+|.+|..+++.+...|.+|++++|+++ +.+.++  +..|+..+ .|..+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d   69 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE   69 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCC
Confidence            47999999999999999888888999999999874 433332  03455432 34444

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.29  E-value=0.019  Score=48.17  Aligned_cols=39  Identities=23%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKE  119 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~  119 (192)
                      +.++.++||+||+|+||..+++.....|+ +|+.++|+..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            56789999999999999999987777899 6999999864

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.29  E-value=0.0051  Score=49.10  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHH--cCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKL--AGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~--~Ga~Vi~~~~~~~  119 (192)
                      .+.+|||+||+|.+|..+++.+..  .|++|++++|++.
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            478999999999999999987777  8999999998654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.27  E-value=0.011  Score=46.80  Aligned_cols=36  Identities=11%  Similarity=0.061  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+.+|||+||+|.+|..+++.+...|.+|++++|+.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   59 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS   59 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            367999999999999999998888899999999854

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.25  E-value=0.0058  Score=48.81  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +.+|||+||+|.+|..+++.+...|++|++++|++++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   37 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASS   37 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            3579999999999999998887889999999988654

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.23  E-value=0.017  Score=48.90  Aligned_cols=38  Identities=13%  Similarity=-0.003  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEE-eCC
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGS-AGS  117 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~-~~~  117 (192)
                      .+++++++||+||+|+||..+++.....|++ |+.+ .|+
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3567899999999999999999877778995 7777 777

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.22  E-value=0.011  Score=48.71  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=43.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      .+++|+|.| .|.+|+.+++.++..|.+|+++++++++.+.++ +.|...+
T Consensus         3 ~~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~-~~g~~vi   51 (413)
T 3l9w_A            3 HGMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR-KFGMKVF   51 (413)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH-HTTCCCE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-hCCCeEE
Confidence            356799999 899999999999999999999999999999999 8887644

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.20  E-value=0.0062  Score=48.10  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+.+|||+||+|.+|..+++.+...|++|++++|++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4678999999999999999888888999999998754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.20  E-value=0.0048  Score=45.90  Aligned_cols=93  Identities=22%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cC-----CCeeeecCCcccHHHHHHhhc
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNK---FG-----FDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g-----~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      +.++++||-.| +|+ |..+..+++..|  .+|++++.+++.++.+++.   .+     .+.+ ..... +..+..  ..
T Consensus        75 ~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~-d~~~~~--~~  148 (226)
T 1i1n_A           75 LHEGAKALDVG-SGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV-QLVVG-DGRMGY--AE  148 (226)
T ss_dssp             SCTTCEEEEET-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE-EEEES-CGGGCC--GG
T ss_pred             CCCCCEEEEEc-CCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE-EEEEC-CcccCc--cc
Confidence            77899999999 665 888888998876  5999999999988888732   22     1221 11111 111100  00


Q ss_pred             cCCcc-----cccHHHHHHHHHhhcCCCeEEEee
Q 029543          151 LCWVD-----FVGIEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       151 ~~g~d-----~~g~~~~~~~~~~l~~~G~v~~G~  179 (192)
                      .+.+|     ..-...+..+.+.|+|+|++++..
T Consensus       149 ~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            11233     222346678889999999655443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.20  E-value=0.0035  Score=46.04  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=32.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~  120 (192)
                      +.+|+|+||+|.+|..+++.+...|.  +|++++|++++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~   43 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA   43 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc
Confidence            57899999999999999998888898  99999988653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.18  E-value=0.035  Score=41.52  Aligned_cols=89  Identities=12%  Similarity=0.114  Sum_probs=57.8

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc-----
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV-----  154 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~-----  154 (192)
                      .+.++++||=.| +| .|..+..+++. |++|++++.+++.++.++ +.  ..++   .. +..+.......+.+     
T Consensus        38 ~~~~~~~vLDiG-cG-~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~-~~--~~~~---~~-d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           38 YFKGCRRVLDIG-CG-RGEFLELCKEE-GIESIGVDINEDMIKFCE-GK--FNVV---KS-DAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             GTTTCSCEEEET-CT-TTHHHHHHHHH-TCCEEEECSCHHHHHHHH-TT--SEEE---CS-CHHHHHHTSCTTCBSEEEE
T ss_pred             hhcCCCeEEEEe-CC-CCHHHHHHHhC-CCcEEEEECCHHHHHHHH-hh--ccee---ec-cHHHHhhhcCCCCeeEEEE
Confidence            356789999998 44 46666666665 889999999999999988 44  2222   22 44433322222222     


Q ss_pred             ----cccc----HHHHHHHHHhhcCCCeEEEe
Q 029543          155 ----DFVG----IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 ----d~~g----~~~~~~~~~~l~~~G~v~~G  178 (192)
                          +.+.    ...++.+.+.|+|+|++++.
T Consensus       108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (240)
T 3dli_A          108 SHFVEHLDPERLFELLSLCYSKMKYSSYIVIE  139 (240)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCchhhCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence                2333    34788889999999965443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.18  E-value=0.0076  Score=46.90  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=34.8

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-----KEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-----~~~~~~~~  125 (192)
                      ..+|+|+||+|.+|..+++.+...|.+|++++|+     +++.+.++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~   50 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLL   50 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHH
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHH
Confidence            3579999999999999998888889999999998     45555443

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.18  E-value=0.0054  Score=47.61  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +|||+||+|-||..+++.+...|.+|++++|++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5999999999999999999999999999998754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.18  E-value=0.0073  Score=47.94  Aligned_cols=64  Identities=22%  Similarity=0.141  Sum_probs=43.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHH--hcCCCee-eecCCcccHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK----EKVDLLKN--KFGFDDA-FNYKEEPDLDVALK  147 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~----~~~~~~~~--~~g~~~v-i~~~~~~~~~~~i~  147 (192)
                      ..+|||+||+|.+|..+++.+...|.+|++++|++    ++.+.+++  ..++..+ .|..+.+.+.+.++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~   80 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILK   80 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHh
Confidence            45799999999999999988888899999999976    55554430  3344332 34444323444444

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.16  E-value=0.0053  Score=48.80  Aligned_cols=48  Identities=25%  Similarity=0.333  Sum_probs=40.8

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~  126 (192)
                      ....+.+|++||-.| +|+ |.++..+++..|  .+|++++.+++.++.+++
T Consensus        99 ~~l~~~~g~~VLDiG-~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           99 SMMDINPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeC-CCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            455788999999999 676 888889998876  589999999998888874

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.16  E-value=0.0053  Score=47.80  Aligned_cols=36  Identities=11%  Similarity=0.163  Sum_probs=32.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +.+|||+||+|.+|..+++.+...|.+|++++|++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            678999999999999999888888999999998765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.14  E-value=0.0058  Score=48.26  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=59.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      +...+.++++||-.| +|. |.++..+++..+  .+|++++.+++.++.+++.   .|.+. ++.... +..+....  .
T Consensus        69 ~~l~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~-d~~~~~~~--~  142 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCG-DGYYGVPE--F  142 (317)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEES-CGGGCCGG--G
T ss_pred             HhcCCCCcCEEEEec-CCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEEC-Chhhcccc--C
Confidence            556788999999999 666 888888888754  4799999999998888743   35443 221111 22111110  1


Q ss_pred             CCccc-----ccHHHHHHHHHhhcCCCeEEEe
Q 029543          152 CWVDF-----VGIEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 ~g~d~-----~g~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +.+|.     +-....+.+.+.|+|+|++++-
T Consensus       143 ~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             CCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEE
Confidence            12221     1112335678899999965443

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.13  E-value=0.0045  Score=49.55  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=35.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+.+|||+||+|.+|..+++.+... |.+|++++|++++.+.+.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~   66 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV   66 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc
Confidence            3578999999999999999877777 899999999877655443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.13  E-value=0.0099  Score=46.07  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +++++|+| +|++|..++..++..|.+|+++.|+++|.+.+. +++
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~  161 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG  161 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC
Confidence            88999999 799999999888888999999999999988887 665

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.12  E-value=0.011  Score=47.35  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=38.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC--CHHHHHHHHHhcCCCeeeec
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAG--SKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~--~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +|||+||+|.+|..+++.+...|. +|+..++  +++.++.+. + ++|.+|+.
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~-~-~~d~Vih~   53 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESAL-L-KADFIVHL   53 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHH-H-HCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHh-c-cCCEEEEC
Confidence            699999999999999988888898 9999998  344444444 2 57887763

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.12  E-value=0.017  Score=44.90  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+++++|+| +|++|..++..+...| +|++++|+.++.+.+.
T Consensus       127 ~~k~vlV~G-aGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~  167 (287)
T 1nvt_A          127 KDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALA  167 (287)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHH
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCC-CEEEEECCHHHHHHHH
Confidence            578999999 5799999998888889 9999999988776664

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.12  E-value=0.029  Score=43.71  Aligned_cols=70  Identities=16%  Similarity=0.038  Sum_probs=48.5

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +|...-+...+.+...--.|++++|.|+++.+|..+++++...|++|+++.+..+.++...  ..+|.+|+.
T Consensus       141 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~--~~ADIVI~A  210 (285)
T 3p2o_A          141 PCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT--RQADLIIVA  210 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH--TTCSEEEEC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHh--hcCCEEEEC
Confidence            4444444555533322347999999997666899999999999999999987665555433  246766653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.10  E-value=0.0044  Score=50.75  Aligned_cols=38  Identities=8%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .++.+|||+||+|.+|..+++.....|++|++++|+++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            34678999999999999988877777899999999876

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.09  E-value=0.031  Score=47.07  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~  118 (192)
                      ++++||+|++|+||..+++.....|+ +|+.+.|+.
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            38999999999999999987778899 899999873

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=96.08  E-value=0.01  Score=44.88  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             CCCEEEEeCC----------------CchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAA----------------SGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga----------------~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|.+|||+||                +|.+|..+++.+..+|++|+.+.+..
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~   53 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKR   53 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5889999998                78899999999999999999998753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.05  E-value=0.027  Score=42.93  Aligned_cols=90  Identities=17%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCCcccc
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCWVDFV  157 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g~d~~  157 (192)
                      +.++++||-.| +|. |.+++.+++ .|++|++++.++...+.+++.   .+.+  +..... ++.+.+.   .+.+|.+
T Consensus       118 ~~~~~~VLDiG-cG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~-d~~~~~~---~~~fD~V  188 (254)
T 2nxc_A          118 LRPGDKVLDLG-TGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEG-SLEAALP---FGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEES-CHHHHGG---GCCEEEE
T ss_pred             cCCCCEEEEec-CCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC-ChhhcCc---CCCCCEE
Confidence            57899999999 666 888887777 577999999999988888732   3443  222222 4444321   1223321


Q ss_pred             -----c---HHHHHHHHHhhcCCCeE-EEee
Q 029543          158 -----G---IEYCRSLLLVLLFRPLK-IMEN  179 (192)
Q Consensus       158 -----g---~~~~~~~~~~l~~~G~v-~~G~  179 (192)
                           .   ...+..+.+.|+|+|++ +.+.
T Consensus       189 v~n~~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          189 VANLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence                 1   23677888999999965 4443

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.04  E-value=0.014  Score=45.49  Aligned_cols=54  Identities=13%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-------HHHHHHHHhcCCCeeeecC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK-------EKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~-------~~~~~~~~~~g~~~vi~~~  137 (192)
                      +.+|||+||+|.+|..+++.+...|.+|++++++.       +.++.+.++.++|.||+..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcC
Confidence            46899999999999999988888899988887642       2233322244788888743

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.02  E-value=0.0066  Score=47.23  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=31.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +|||+||+|.+|..+++.+...|++|++++|++++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSG   36 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            69999999999999999888889999999987654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.02  E-value=0.034  Score=40.61  Aligned_cols=88  Identities=19%  Similarity=0.069  Sum_probs=58.2

Q ss_pred             hCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee--eecCCcccHHHHHHhhccCCcc-
Q 029543           79 CSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA--FNYKEEPDLDVALKRMFLCWVD-  155 (192)
Q Consensus        79 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v--i~~~~~~~~~~~i~~~~~~g~d-  155 (192)
                      ..+.++.+||-.| +|. |..+..+++. |++|++++.+++.++.++ +.+...+  +..    ++.+.   ...+.+| 
T Consensus        42 ~~~~~~~~vLdiG-~G~-G~~~~~l~~~-~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~----d~~~~---~~~~~~D~  110 (218)
T 3ou2_A           42 RAGNIRGDVLELA-SGT-GYWTRHLSGL-ADRVTALDGSAEMIAEAG-RHGLDNVEFRQQ----DLFDW---TPDRQWDA  110 (218)
T ss_dssp             TTTTSCSEEEEES-CTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHG-GGCCTTEEEEEC----CTTSC---CCSSCEEE
T ss_pred             hcCCCCCeEEEEC-CCC-CHHHHHHHhc-CCeEEEEeCCHHHHHHHH-hcCCCCeEEEec----ccccC---CCCCceeE
Confidence            3477889999999 554 8888888887 889999999999999998 6664332  221    11110   1111222 


Q ss_pred             --------ccc----HHHHHHHHHhhcCCCeEEE
Q 029543          156 --------FVG----IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       156 --------~~g----~~~~~~~~~~l~~~G~v~~  177 (192)
                              ...    ...++.+.+.|+|+|++++
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~  144 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEF  144 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence                    222    2367888899999996533

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.02  E-value=0.048  Score=42.76  Aligned_cols=69  Identities=16%  Similarity=0.040  Sum_probs=48.7

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHHhcCCCeeeec
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD---LLKNKFGFDDAFNY  136 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~---~~~~~~g~~~vi~~  136 (192)
                      +|...-++..+.+..---.|.+++|.|+++-+|..+++++...|++|+++.++...++   .++   .+|.+|+.
T Consensus       146 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~---~ADIVI~A  217 (300)
T 4a26_A          146 PCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLR---TADIVIAA  217 (300)
T ss_dssp             CHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHH---TCSEEEEC
T ss_pred             CCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhc---cCCEEEEC
Confidence            4555555555644333347999999996666899999999999999999987555554   233   47776653

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.01  E-value=0.0019  Score=51.35  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=30.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +++|+|+||+|+||..+++.....|++|+.++++.
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~   36 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATL   36 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeec
Confidence            67899999999999999988888899887776553

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.97  E-value=0.014  Score=46.03  Aligned_cols=45  Identities=16%  Similarity=0.202  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|.+|.|+| .|.+|...++.++.+|++|++.++++++ +.++ ++|+
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-~~g~  185 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-EVNG  185 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HTTC
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-hcCc
Confidence            578999999 9999999999999999999999998776 4444 5554

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.97  E-value=0.01  Score=47.06  Aligned_cols=36  Identities=14%  Similarity=0.111  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+.+|||+||+|.+|..+++.+...|.+|++++|++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            357899999999999999988888899999999865

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.96  E-value=0.038  Score=43.01  Aligned_cols=70  Identities=20%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +|...-++..+.+..---.|++++|.|+++-+|..+++++...|++|+++.+..+.++...  ..+|.+|+.
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~--~~ADIVI~A  211 (285)
T 3l07_A          142 SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT--TKADILIVA  211 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH--TTCSEEEEC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhc--ccCCEEEEC
Confidence            4555555555633322347999999996666899999999999999988876655554432  246777653

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=95.95  E-value=0.0085  Score=46.60  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||+  ++||..+++.....|++|++++|++
T Consensus         7 ~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~   44 (297)
T 1d7o_A            7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccc
Confidence            47899999998  9999999988778899999998653

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=95.95  E-value=0.012  Score=44.39  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCCEEEEeCC----------------CchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAA----------------SGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga----------------~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++|||+||                +|++|..+++.+...|++|+.+.+.
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~   57 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP   57 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999998                5999999999999999999988754

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.94  E-value=0.012  Score=43.72  Aligned_cols=94  Identities=14%  Similarity=0.023  Sum_probs=59.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--C-eeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF--D-DAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~--~-~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      +...+.++++||-.| +|. |..+..+++. +.+|++++.+++.++.+++.+..  . .++..    +..+...  ..+.
T Consensus        64 ~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~----d~~~~~~--~~~~  134 (231)
T 1vbf_A           64 DELDLHKGQKVLEIG-TGI-GYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILG----DGTLGYE--EEKP  134 (231)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEES----CGGGCCG--GGCC
T ss_pred             HhcCCCCCCEEEEEc-CCC-CHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC----Ccccccc--cCCC
Confidence            556788999999999 665 8888888886 48999999999999998844321  1 12221    2111011  0112


Q ss_pred             cccc-----cHHHHHHHHHhhcCCCeEEEee
Q 029543          154 VDFV-----GIEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       154 ~d~~-----g~~~~~~~~~~l~~~G~v~~G~  179 (192)
                      +|.+     -......+.+.|+|+|++++..
T Consensus       135 fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          135 YDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCcHHHHHHHHHHHcCCCcEEEEEE
Confidence            2221     1223457889999999654433

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.94  E-value=0.0079  Score=48.32  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+|||+||+|.||..+++.+...|++|++++|++++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence            689999999999999998888889999999987653

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.93  E-value=0.015  Score=44.82  Aligned_cols=32  Identities=9%  Similarity=0.074  Sum_probs=28.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +|||+||+|.+|..+++.+. .|.+|++++|++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~   33 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHS   33 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEecccc
Confidence            69999999999999998777 799999998864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.92  E-value=0.039  Score=42.76  Aligned_cols=67  Identities=7%  Similarity=-0.029  Sum_probs=48.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~  135 (192)
                      +|...-....+.+. + -.|.+++|.|+++-+|..+++++...|++|+++.++.+.++... + .+|.+|+
T Consensus       133 PcTp~gv~~lL~~~-~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~-~-~ADIVI~  199 (276)
T 3ngx_A          133 PATPRAVIDIMDYY-G-YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMT-R-SSKIVVV  199 (276)
T ss_dssp             CHHHHHHHHHHHHH-T-CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-H-HSSEEEE
T ss_pred             CCcHHHHHHHHHHh-C-cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhh-c-cCCEEEE
Confidence            55555556666444 4 67999999996667999999999999999999987655554432 1 2565554

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.91  E-value=0.0058  Score=46.14  Aligned_cols=37  Identities=14%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~  119 (192)
                      .++++||+||+|+||..+++.... .|++|+.++++++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~   40 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQS   40 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccc
Confidence            478899999999999988865555 6789999987754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.91  E-value=0.019  Score=44.47  Aligned_cols=46  Identities=26%  Similarity=0.192  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+.+|+|+| +|++|..+++.+...|++|++.+|++++.+.+.+++|
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g  173 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFP  173 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSC
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcC
Confidence            578999999 7999999998888889999999999988776653444

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.86  E-value=0.031  Score=42.81  Aligned_cols=46  Identities=26%  Similarity=0.319  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .| +++|+| +|.+|..+++.++..|++|++.+|++++.+.+.+++|.
T Consensus       116 ~~-~v~iiG-~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~  161 (263)
T 2d5c_A          116 KG-PALVLG-AGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGL  161 (263)
T ss_dssp             CS-CEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTC
T ss_pred             CC-eEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcc
Confidence            46 999999 79999999988888899999999998887666545553

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.86  E-value=0.01  Score=47.77  Aligned_cols=38  Identities=18%  Similarity=0.055  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~  120 (192)
                      .+.+|||+||+|.+|..+++.+...| .+|++++|++++
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSA   69 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCC
Confidence            36789999999999999998888889 899999987653

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=95.86  E-value=0.014  Score=47.05  Aligned_cols=39  Identities=15%  Similarity=0.076  Sum_probs=31.5

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ...+.+|||+||+|.||..+++.+...|++|+++++...
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~   46 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVR   46 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            346889999999999999999877778999999998654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.86  E-value=0.047  Score=42.52  Aligned_cols=70  Identities=17%  Similarity=0.011  Sum_probs=47.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeec
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +|...-++..+.+..---.|++++|.|+++-+|.-+++++...|++|+.+.+..+.++...  -.+|.+|+.
T Consensus       142 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~--~~ADIVI~A  211 (286)
T 4a5o_A          142 PCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHV--SRADLVVVA  211 (286)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH--HTCSEEEEC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHh--ccCCEEEEC
Confidence            4444455555633322247999999997667999999999999999999886554444332  146766653

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.85  E-value=0.0097  Score=47.92  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+.+|||+||+|.+|..+++.+...|++|++++|++.+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   65 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   65 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            35689999999999999998888889999999988654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=95.84  E-value=0.028  Score=50.01  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCC-EEEEEeCCHH---H----HHHHHHhcCCCe---eeecCCcccHHHHHHh
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAK-LAGC-HVVGSAGSKE---K----VDLLKNKFGFDD---AFNYKEEPDLDVALKR  148 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~-~~Ga-~Vi~~~~~~~---~----~~~~~~~~g~~~---vi~~~~~~~~~~~i~~  148 (192)
                      +.++.+++|+|++|++|..+++... ..|+ +|+.++|+..   +    .+.++ +.|...   ..|..+.+++.+.+.+
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~-~~G~~v~~~~~Dvsd~~~v~~~~~~  605 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLT-AYGAEVSLQACDVADRETLAKVLAS  605 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHH-hcCCcEEEEEeecCCHHHHHHHHHH
Confidence            4578999999999999999888765 7899 6999999832   2    22333 456543   2355554245444444

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.83  E-value=0.11  Score=39.63  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=43.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALK  147 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~  147 (192)
                      +|+|.|++|.+|+..++.+... +.+++++....+.++.+. ..++|.+||........+.+.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-~~~~DvvIDfT~p~a~~~~~~   63 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLE   63 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-HTTCCEEEECSCTTTHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-ccCCcEEEEccChHHHHHHHH
Confidence            5899998899999999988765 788776654444455555 447899999876534444443

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.81  E-value=0.012  Score=46.21  Aligned_cols=38  Identities=13%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDL  123 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~  123 (192)
                      +|||+||+|.+|..+++.+... |.+|++++|++++.+.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~   40 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR   40 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Confidence            6999999999999999888777 8999999998776543

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=95.77  E-value=0.013  Score=49.61  Aligned_cols=46  Identities=28%  Similarity=0.281  Sum_probs=36.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .+++++|+|| |++|..++..+...|++|+++.|+.++.+.+.++++
T Consensus       363 ~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~  408 (523)
T 2o7s_A          363 ASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG  408 (523)
T ss_dssp             ---CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC
Confidence            4678999995 899999998888889999999999988887764554

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.77  E-value=0.013  Score=46.34  Aligned_cols=34  Identities=24%  Similarity=0.103  Sum_probs=30.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +.+|||+||+|.+|..+++.+...|++|++++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4689999999999999998887889999999874

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.74  E-value=0.025  Score=41.54  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +|+|+||+|.+|...++.....|.+|++.+|++++.+.++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~   45 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            58999989999998888777789999999999988777663344

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.73  E-value=0.016  Score=45.76  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+.+|||+||+|.+|..+++.+...|.+|++++|+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            467899999999999999988888899999999864

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.72  E-value=0.024  Score=47.41  Aligned_cols=48  Identities=21%  Similarity=0.086  Sum_probs=40.9

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      --.|++|.|.| .|.||..+++.++.+|++|++.++++.+...+. ..|.
T Consensus       254 ~l~GktVgIIG-~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGF  301 (479)
T ss_dssp             CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTC
T ss_pred             ccCCCEEEEEe-eCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCC
Confidence            34799999999 999999999999999999999999988764454 5554

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.72  E-value=0.012  Score=47.05  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+|||+||+|.+|..+++.+...|++|++++|+++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            57999999999999999888888999999998754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.68  E-value=0.013  Score=46.81  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV  121 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~  121 (192)
                      +.+|+|+||+|.+|..+++.+...|.+|++++|++++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   42 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   42 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh
Confidence            56799999999999999987777899999999987654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.68  E-value=0.0092  Score=47.48  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~  120 (192)
                      .+.+|||+||+|.+|..+++.+...| .+|++++|++++
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   83 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG   83 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCc
Confidence            35789999999999999998888889 799999987543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.67  E-value=0.03  Score=39.04  Aligned_cols=41  Identities=10%  Similarity=0.027  Sum_probs=34.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      .++|+|.| .|.+|...++.+...|.+|++++++ +++.+.++
T Consensus         3 ~~~vlI~G-~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~   44 (153)
T 1id1_A            3 KDHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLE   44 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHH
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHH
Confidence            56799999 7999999999888899999999997 56665555

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.65  E-value=0.026  Score=41.85  Aligned_cols=45  Identities=11%  Similarity=0.016  Sum_probs=38.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|+|.| .|.+|..+++.+...|.+|+++++++++.+.+.+++|..
T Consensus         2 ~iiIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~   46 (218)
T 3l4b_C            2 KVIIIG-GETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT   46 (218)
T ss_dssp             CEEEEC-CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe
Confidence            489999 799999999988889999999999999988876355653

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=95.65  E-value=0.012  Score=46.25  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++++|+||  +++||..+++.....|++|++++|++
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~   45 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPP   45 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHH
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEeccc
Confidence            5789999998  79999999988888899999998753

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.65  E-value=0.012  Score=49.50  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=33.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +.+|||+||+|.+|..+++.+...|.+|++++|++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            6789999999999999999888889999999998654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.63  E-value=0.018  Score=45.38  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .+|||+||+|.+|..+++.+...|.+|++++|+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   34 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence            379999999999999998888889999999874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.63  E-value=0.028  Score=43.53  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++|.|+| +|.+|...++.+...|.+|++.++++++++.++
T Consensus         5 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~   44 (283)
T 4e12_A            5 TNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINTDALDAAK   44 (283)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            5799999 899999999999889999999999999887766

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.62  E-value=0.017  Score=46.48  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=31.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAK-LAGCHVVGSAGSKEK  120 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~-~~Ga~Vi~~~~~~~~  120 (192)
                      .+|||+||+|.||..+++.+. ..|++|++++|+..+
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   39 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGT   39 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcc
Confidence            479999999999999998777 889999999987543

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=95.59  E-value=0.015  Score=45.80  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             CCCEEEEeCC--CchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAA--SGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga--~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||  +++||..+++.....|++|++++|+
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~   44 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWP   44 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEecc
Confidence            4789999998  8999999998888889999999865

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.57  E-value=0.01  Score=46.88  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=32.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC-------CEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG-------CHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G-------a~Vi~~~~~~~  119 (192)
                      .+.+|||+||+|.||..+++.+...|       .+|++++|+++
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~   56 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP   56 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC
Confidence            46789999999999999998877789       79999998754

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.56  E-value=0.025  Score=42.91  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +|+|+||+|.+|..+++.+. .|++|++++|++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~   33 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSS   33 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSS
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCC
Confidence            58999999999999987776 488999999865

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=95.55  E-value=0.029  Score=47.14  Aligned_cols=47  Identities=19%  Similarity=0.083  Sum_probs=40.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      -.|++|.|.| .|.||..+++.++.+|++|++.++++.+..... ..|.
T Consensus       275 L~GktVgIIG-~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~  321 (494)
T 3d64_A          275 IAGKIAVVAG-YGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGY  321 (494)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTC
T ss_pred             cCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCC
Confidence            4789999999 999999999999999999999999988754444 5555

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.55  E-value=0.016  Score=43.98  Aligned_cols=49  Identities=14%  Similarity=0.141  Sum_probs=40.4

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHh
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~  127 (192)
                      ....++||++||=.|+  |.|..+..+|+..|-  +|++++.+++.++.+++.
T Consensus        71 ~~l~ikpG~~VldlG~--G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~  121 (233)
T 4df3_A           71 IELPVKEGDRILYLGI--ASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV  121 (233)
T ss_dssp             SCCCCCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH
T ss_pred             hhcCCCCCCEEEEecC--cCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Confidence            4457899999999993  447888899998874  899999999998888733

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.53  E-value=0.031  Score=43.28  Aligned_cols=90  Identities=17%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc----CC--------CeeeecCCcccHHHHHHh
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF----GF--------DDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~----g~--------~~vi~~~~~~~~~~~i~~  148 (192)
                      ..+++||..| +| .|..+..+++. +. +|++++.+++-.+.+++.+    +.        +.-+..... |..+.+..
T Consensus        74 ~~~~~VLdiG-~G-~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~-D~~~~l~~  149 (281)
T 1mjf_A           74 PKPKRVLVIG-GG-DGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG-DGFEFIKN  149 (281)
T ss_dssp             SCCCEEEEEE-CT-TSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES-CHHHHHHH
T ss_pred             CCCCeEEEEc-CC-cCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEEC-chHHHhcc
Confidence            4568999999 33 46677777777 66 9999999999999998555    21        111222222 44444433


Q ss_pred             hccCCc-----ccc----------cHHHHHHHHHhhcCCCeEEE
Q 029543          149 MFLCWV-----DFV----------GIEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       149 ~~~~g~-----d~~----------g~~~~~~~~~~l~~~G~v~~  177 (192)
                        .+.+     |..          ..+.++.+.+.|+|+|++++
T Consensus       150 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~  191 (281)
T 1mjf_A          150 --NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT  191 (281)
T ss_dssp             --CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred             --cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence              2222     332          13467888999999996543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.49  E-value=0.028  Score=44.38  Aligned_cols=45  Identities=20%  Similarity=0.227  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|.+|.|+| .|.+|...++.++..|++|++.++++++. .++ ++|+
T Consensus       141 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~g~  185 (313)
T 2ekl_A          141 AGKTIGIVG-FGRIGTKVGIIANAMGMKVLAYDILDIRE-KAE-KINA  185 (313)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-HTTC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCcchh-HHH-hcCc
Confidence            588999999 99999999999999999999999987654 344 4553

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=95.47  E-value=0.039  Score=55.57  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=35.3

Q ss_pred             CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           82 KKGEYVYVSAASGA-VGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~-iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      -.|++++|+||++| ||..+++.....|++|++++++.++
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~ 2173 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDD 2173 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            46899999999999 9999998888899999999998765

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.47  E-value=0.0079  Score=46.74  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=31.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~  120 (192)
                      +.+|||+||+|.+|..+++.+...  |.+|++++|++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~   40 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLN   40 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCS
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcc
Confidence            357999999999999999777766  7899999987655

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.45  E-value=0.018  Score=46.34  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=38.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|.+|.|+| .|.||...++.++.+|.+|++.++++.+.+.++ +.|+
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~  208 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-ETGA  208 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-HHCC
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-hCCC
Confidence            588999999 999999999999999999999998865555555 4443

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.44  E-value=0.026  Score=45.07  Aligned_cols=45  Identities=18%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|++|.|+| .|.||...++.++.+|.+|++.+++.++ +.++ ++|+
T Consensus       164 ~g~tvgIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~  208 (335)
T 2g76_A          164 NGKTLGILG-LGRIGREVATRMQSFGMKTIGYDPIISP-EVSA-SFGV  208 (335)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHH-HTTC
T ss_pred             CcCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-hcCc
Confidence            578999999 9999999999999999999999988665 3444 5554

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.44  E-value=0.019  Score=44.99  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+|||+||+|.+|..+++.+...|.+|++++|+..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQT   36 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            47999999999999999888888999999987643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.42  E-value=0.043  Score=42.25  Aligned_cols=45  Identities=16%  Similarity=0.236  Sum_probs=39.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .+|.|+| +|.+|...++.++..|.  +|++.++++++.+.++ ++|..
T Consensus         2 ~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~g~~   48 (281)
T 2g5c_A            2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGII   48 (281)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSC
T ss_pred             cEEEEEe-cCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HCCCc
Confidence            3689999 89999999998888887  8999999999988887 77753

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.41  E-value=0.089  Score=42.81  Aligned_cols=96  Identities=9%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc--
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV--  154 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~--  154 (192)
                      ....+.++.+||=.| +|. |.++..+++ .|.+|++++.+++-++.++ +.+.......-.. +..+.+. ...+.+  
T Consensus       101 ~~~~~~~~~~VLDiG-cG~-G~~~~~l~~-~g~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~-~~~~~l~-~~~~~fD~  174 (416)
T 4e2x_A          101 ATELTGPDPFIVEIG-CND-GIMLRTIQE-AGVRHLGFEPSSGVAAKAR-EKGIRVRTDFFEK-ATADDVR-RTEGPANV  174 (416)
T ss_dssp             HTTTCSSSCEEEEET-CTT-TTTHHHHHH-TTCEEEEECCCHHHHHHHH-TTTCCEECSCCSH-HHHHHHH-HHHCCEEE
T ss_pred             HHhCCCCCCEEEEec-CCC-CHHHHHHHH-cCCcEEEECCCHHHHHHHH-HcCCCcceeeech-hhHhhcc-cCCCCEEE
Confidence            444567889999999 444 667777766 4889999999999999998 6676554332222 2222222 111122  


Q ss_pred             -------cccc--HHHHHHHHHhhcCCCeEEEe
Q 029543          155 -------DFVG--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 -------d~~g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                             +.+.  ...++.+.+.|+|+|++++.
T Consensus       175 I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          175 IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             EEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                   2222  34788899999999966553

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.35  E-value=0.015  Score=43.07  Aligned_cols=32  Identities=22%  Similarity=0.160  Sum_probs=28.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|+.|+.++..++..|.+|+++++++
T Consensus         4 dV~IIG-aGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIG-TGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            399999 89999999999999999999999753

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.30  E-value=0.033  Score=44.39  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|.+|.|+| .|.+|...++.++..|.+|++.++++++ +.++ ++|.
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-ELNA  193 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HHCC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-hcCc
Confidence            578999999 8999999999999999999999998876 5444 4443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.29  E-value=0.048  Score=43.02  Aligned_cols=45  Identities=16%  Similarity=0.238  Sum_probs=40.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      -.+|.|+| .|.+|...++..+..|.  +|++.++++++.+.++ +.|.
T Consensus        33 ~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~   79 (314)
T 3ggo_A           33 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGI   79 (314)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTS
T ss_pred             CCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCC
Confidence            36899999 99999999999988998  9999999999998887 6665

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.28  E-value=0.06  Score=46.41  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|++++|+||++|||..+++.....|++|++.++.
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~  355 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK  355 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc
Confidence            47899999999999999998888899999998853

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=95.26  E-value=0.032  Score=43.39  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=27.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~  118 (192)
                      +|||+||+|.+|..+++.+...  |.+|+++++++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~   35 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQ   35 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence            4899999999999988766666  67899988754

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=95.22  E-value=0.023  Score=44.13  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=29.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +|||+||+|.+|..+++.+...|++|+++++.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~   33 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNL   33 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            69999999999999998888889999999874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.21  E-value=0.096  Score=41.47  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=56.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCC--eeeecCCcccHHHHHHhhccCCc-----ccc
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFD--DAFNYKEEPDLDVALKRMFLCWV-----DFV  157 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~i~~~~~~g~-----d~~  157 (192)
                      +||++|  +|.|.++..+++.. +.+|++++.+++-.+.+++.++..  .-+..... |..+.+.+...+.+     |..
T Consensus        92 rVLdIG--~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~-Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           92 RITHLG--GGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVD-DARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             EEEEES--CGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEES-CHHHHHHTCCTTCEEEEEECCS
T ss_pred             EEEEEE--CCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEEC-cHHHHHhhccCCCCCEEEECCC
Confidence            899999  44577888888865 679999999999999998555532  11111122 45555543322222     321


Q ss_pred             ---c-------HHHHHHHHHhhcCCCeE
Q 029543          158 ---G-------IEYCRSLLLVLLFRPLK  175 (192)
Q Consensus       158 ---g-------~~~~~~~~~~l~~~G~v  175 (192)
                         +       .+.++.+.+.|+++|++
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvl  196 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLY  196 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEE
Confidence               1       34788899999999954

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.21  E-value=0.033  Score=43.08  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc-----CC-CeeeecCCcccHHHHHHhhccCCc-
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF-----GF-DDAFNYKEEPDLDVALKRMFLCWV-  154 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~-----g~-~~vi~~~~~~~~~~~i~~~~~~g~-  154 (192)
                      ..++||+.| +| .|..+..+++..+. +|++++.+++-.+.+++.+     +. +.-+..... |..+.+.+. .+.+ 
T Consensus        75 ~~~~VLdiG-~G-~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~~~-~~~fD  150 (275)
T 1iy9_A           75 NPEHVLVVG-GG-DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-DGFMHIAKS-ENQYD  150 (275)
T ss_dssp             SCCEEEEES-CT-TCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-CSHHHHHTC-CSCEE
T ss_pred             CCCEEEEEC-Cc-hHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-cHHHHHhhC-CCCee
Confidence            568999999 33 46677777777665 9999999999888888444     22 111111112 333333322 1122 


Q ss_pred             ----ccc---c-------HHHHHHHHHhhcCCCeEEEe
Q 029543          155 ----DFV---G-------IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 ----d~~---g-------~~~~~~~~~~l~~~G~v~~G  178 (192)
                          |..   +       .+.++.+.+.|+|+|++++-
T Consensus       151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence                322   1       35788999999999966543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.20  E-value=0.033  Score=44.12  Aligned_cols=45  Identities=9%  Similarity=0.003  Sum_probs=37.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~~~~g~  130 (192)
                      .|.+|.|+| .|.||...++.++.+|.+|++.++ ++++ +.++ ++|+
T Consensus       145 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~-~~g~  190 (320)
T 1gdh_A          145 DNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEA-SYQA  190 (320)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHH-HHTC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhh-hcCc
Confidence            578999999 999999999999999999999998 7655 3333 4443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.19  E-value=0.016  Score=46.24  Aligned_cols=45  Identities=13%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|.+|.|+| .|.||..+++.++.+|.+|++.++++.+.+..+ ++|
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~g  188 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLG  188 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-HHT
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-hcC
Confidence            478999999 999999999999999999999999874444444 444

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.18  E-value=0.038  Score=44.42  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|++|.|+| .|.||..+++.++.+|.+|++.+++.+ .+.+. +.|+
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~-~~g~  203 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRAFGMNVLVWGRENS-KERAR-ADGF  203 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHH-HTTC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHH-hcCc
Confidence            478999999 999999999999999999999998753 34455 5565

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.17  E-value=0.029  Score=44.99  Aligned_cols=45  Identities=18%  Similarity=0.177  Sum_probs=37.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAK-LAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~-~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|.+|.|+| .|.+|...++.++ ..|.+|++.++++++.+.++ ++|
T Consensus       162 ~g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-~~g  207 (348)
T 2w2k_A          162 RGHVLGAVG-LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-ALG  207 (348)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-HHT
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-hcC
Confidence            578999999 8999999999999 99999999999876555444 444

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.17  E-value=0.026  Score=46.05  Aligned_cols=45  Identities=16%  Similarity=0.069  Sum_probs=37.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|.+|.|+| .|.||..+++.++.+|.+|++.++++.+.+..+ ++|
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-~~G  234 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-ELN  234 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-HHT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-hcC
Confidence            588999999 999999999999999999999998865444444 444

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.16  E-value=0.054  Score=42.79  Aligned_cols=93  Identities=16%  Similarity=0.024  Sum_probs=57.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC------CeeeecCCcccHHHHHHhhccCCc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGF------DDAFNYKEEPDLDVALKRMFLCWV  154 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~------~~vi~~~~~~~~~~~i~~~~~~g~  154 (192)
                      ...++||+.|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+..      +.-+..... |..+.+.. ..+.+
T Consensus       107 ~~~~~VLdIG--~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~-D~~~~l~~-~~~~f  182 (314)
T 2b2c_A          107 PDPKRVLIIG--GGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-DGFEFLKN-HKNEF  182 (314)
T ss_dssp             SSCCEEEEES--CTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-CHHHHHHH-CTTCE
T ss_pred             CCCCEEEEEc--CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEC-hHHHHHHh-cCCCc
Confidence            3568999999  345677777887654 5999999999999999854421      111222233 55544433 12222


Q ss_pred             -----ccc---c-------HHHHHHHHHhhcCCCeEEEe
Q 029543          155 -----DFV---G-------IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 -----d~~---g-------~~~~~~~~~~l~~~G~v~~G  178 (192)
                           |..   +       .+.++.+.+.|+|+|++++-
T Consensus       183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~  221 (314)
T 2b2c_A          183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  221 (314)
T ss_dssp             EEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence                 332   1       34678888999999966543

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.16  E-value=0.029  Score=44.22  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~  118 (192)
                      .+|||+||+|.+|..+++.+...  |.+|++++|++
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~   40 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT   40 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            57999999999999999877766  78999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.15  E-value=0.012  Score=45.84  Aligned_cols=39  Identities=5%  Similarity=0.101  Sum_probs=34.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~  122 (192)
                      .+++++|+| +|++|..++..++..|+ +|+++.|+.++.+
T Consensus       116 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~v~~R~~~~a~  155 (277)
T 3don_A          116 EDAYILILG-AGGASKGIANELYKIVRPTLTVANRTMSRFN  155 (277)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            578999999 79999999988888999 8999999987754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.14  E-value=0.1  Score=40.91  Aligned_cols=68  Identities=12%  Similarity=-0.049  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 029543           65 IMPSVTAFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~  135 (192)
                      +|...-....+. ...+ -.|.+|+|.|++..+|.-+++++...|++|+++.+..+.++...  -.+|.+|.
T Consensus       146 PcTp~gi~~ll~-~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~--~~ADIVI~  214 (301)
T 1a4i_A          146 PCTPKGCLELIK-ETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV--NKGDILVV  214 (301)
T ss_dssp             CHHHHHHHHHHH-TTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH--TTCSEEEE
T ss_pred             CchHHHHHHHHH-HcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHh--ccCCEEEE
Confidence            444444444453 3333 47999999996557899999999999999999976655554332  13666554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.14  E-value=0.1  Score=42.84  Aligned_cols=48  Identities=15%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~  126 (192)
                      ....+.+|++||=.| +|+ |..+.++++..+ .+|++++.++++++.+++
T Consensus       240 ~~l~~~~g~~VLDlg-aG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~  288 (429)
T 1sqg_A          240 TWLAPQNGEHILDLC-AAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYD  288 (429)
T ss_dssp             HHHCCCTTCEEEEES-CTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHH
T ss_pred             HHcCCCCcCeEEEEC-CCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            345678999999988 555 777788888775 599999999999888874

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=95.12  E-value=0.0097  Score=47.29  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC-----CEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAG-----CHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~G-----a~Vi~~~~~~~~  120 (192)
                      +.+|||+||+|.+|..+++.+...|     .+|++++|++.+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~   42 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRP   42 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCc
Confidence            4579999999999999998887788     899999987653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.11  E-value=0.0043  Score=47.35  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++|||+||+|.+|..+++.+...|.+|++++|+++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL   37 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            57999999999999999877777899999998764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.10  E-value=0.1  Score=40.65  Aligned_cols=69  Identities=17%  Similarity=0.037  Sum_probs=46.5

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~  135 (192)
                      +|...-....+.+...--.|.+++|.|++.-+|.-+++++...|++|+.+.+..+.++... + .+|.+|.
T Consensus       140 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~-~ADIVI~  208 (288)
T 1b0a_A          140 PCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV-E-NADLLIV  208 (288)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH-H-HCSEEEE
T ss_pred             CCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-c-cCCEEEE
Confidence            4444444555533322347999999996556899999999999999999987766554432 1 2555554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=95.07  E-value=0.054  Score=40.04  Aligned_cols=95  Identities=9%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc---
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL---  151 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~---  151 (192)
                      ...++++||=.| + +.|..++.+++..  +++|++++.+++.++.+++   ..|.+.-+..... +..+.+.....   
T Consensus        55 ~~~~~~~vLdiG-~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~  131 (221)
T 3u81_A           55 REYSPSLVLELG-A-YCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKYD  131 (221)
T ss_dssp             HHHCCSEEEEEC-C-TTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHGGGTTTTSC
T ss_pred             HhcCCCEEEEEC-C-CCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC-CHHHHHHHHHHhcC
Confidence            344678999998 3 3477788888864  6799999999998888874   2455422222222 44444433321   


Q ss_pred             -CCc-----ccccHH------HHHHHHHhhcCCCeEEEe
Q 029543          152 -CWV-----DFVGIE------YCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       152 -~g~-----d~~g~~------~~~~~~~~l~~~G~v~~G  178 (192)
                       +.+     |..-..      .+... +.|+|+|++++-
T Consensus       132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence             123     332211      22223 789999976654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.06  E-value=0.024  Score=43.47  Aligned_cols=41  Identities=20%  Similarity=0.119  Sum_probs=35.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  125 (192)
                      .+ +++|+| +|++|..++..+...|+ +|++++|+++|.+.+.
T Consensus       108 ~~-~vliiG-aGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la  149 (253)
T 3u62_A          108 KE-PVVVVG-AGGAARAVIYALLQMGVKDIWVVNRTIERAKALD  149 (253)
T ss_dssp             CS-SEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCC
T ss_pred             CC-eEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            46 999999 79999999988888999 8999999998876654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.03  E-value=0.092  Score=39.41  Aligned_cols=92  Identities=16%  Similarity=0.123  Sum_probs=61.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCC-e--eeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFD-D--AFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~-~--vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++||-.| +|. |..+..+++..+.+|++++.+++.++.+++.   .|.. .  ++..+-. ++.     . 
T Consensus        30 ~~~~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~-----~-  100 (256)
T 1nkv_A           30 RVLRMKPGTRILDLG-SGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYV-----A-  100 (256)
T ss_dssp             HHTCCCTTCEEEEET-CTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCC-----C-
T ss_pred             HhcCCCCCCEEEEEC-CCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCC-----c-
Confidence            556788999999999 565 8888999998889999999999988887632   3442 1  2211111 110     0 


Q ss_pred             cCCcc---------cc-c-HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWVD---------FV-G-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~d---------~~-g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+.+|         .. . ...+..+.+.|+|+|++++
T Consensus       101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~  138 (256)
T 1nkv_A          101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI  138 (256)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred             CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence            11222         11 1 3468888899999996544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.02  E-value=0.098  Score=38.26  Aligned_cols=91  Identities=15%  Similarity=0.036  Sum_probs=55.6

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC--CCeeeecCCcccHHHHHHhhccCCc---
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG--FDDAFNYKEEPDLDVALKRMFLCWV---  154 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~~~~i~~~~~~g~---  154 (192)
                      ...++.+||=.| +| .|..+..+++. ++++++++.+++-++.+++.+.  .. ++..+-. ++.   ....-+.+   
T Consensus        42 ~~~~~~~vLDiG-cG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~d~~-~~~---~~~~fD~v~~~  113 (220)
T 3hnr_A           42 VNKSFGNVLEFG-VG-TGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPKEFS-ITEGDFL-SFE---VPTSIDTIVST  113 (220)
T ss_dssp             HHTCCSEEEEEC-CT-TSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSCTTCC-EESCCSS-SCC---CCSCCSEEEEE
T ss_pred             hccCCCeEEEeC-CC-CCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCCCceE-EEeCChh-hcC---CCCCeEEEEEC
Confidence            345789999998 44 47777777776 8899999999999999984443  22 2211111 110   00000111   


Q ss_pred             ---ccccH----HHHHHHHHhhcCCCeEEEe
Q 029543          155 ---DFVGI----EYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 ---d~~g~----~~~~~~~~~l~~~G~v~~G  178 (192)
                         .....    ..+..+.+.|+|+|.+++.
T Consensus       114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A          114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             cchhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence               22222    2778889999999965544

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.02  E-value=0.025  Score=45.70  Aligned_cols=45  Identities=16%  Similarity=0.057  Sum_probs=37.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|.+|.|+| .|.||..+++.++.+|++ |++.++++.+.+.+. ++|
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-~~g  208 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-KVG  208 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-HTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-hcC
Confidence            688999999 999999999999999996 999998875555444 444

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.02  E-value=0.022  Score=41.53  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=36.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +.++++||-.| +|. |..+..+++. |. +|++++.++..++.+++..
T Consensus        40 ~~~~~~vLdiG-cG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~   85 (215)
T 2pxx_A           40 LRPEDRILVLG-CGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACY   85 (215)
T ss_dssp             CCTTCCEEEET-CTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHT
T ss_pred             cCCCCeEEEEC-CCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhc
Confidence            57889999999 665 8888888876 55 8999999999999988433

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.02  E-value=0.095  Score=38.88  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=58.4

Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCC
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      +.......++.+||-.| +|. |..+..+++. |. +|++++.+++.++.+++......+ +.... ++.+ . ....+.
T Consensus        35 l~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~-d~~~-~-~~~~~~  107 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLG-CGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGI-TYERA-DLDK-L-HLPQDS  107 (243)
T ss_dssp             HHHHSCCCTTCEEEEET-CTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSE-EEEEC-CGGG-C-CCCTTC
T ss_pred             HHHhccccCCCEEEEEc-CcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCc-eEEEc-Chhh-c-cCCCCC
Confidence            43445566889999998 454 7777777775 77 999999999999999833322111 11111 1111 0 011112


Q ss_pred             cc---------ccc--HHHHHHHHHhhcCCCeEEEe
Q 029543          154 VD---------FVG--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       154 ~d---------~~g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +|         ...  ...++.+.+.|+|+|++++.
T Consensus       108 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          108 FDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEE
Confidence            22         111  24788889999999965443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.02  E-value=0.091  Score=40.30  Aligned_cols=94  Identities=7%  Similarity=0.064  Sum_probs=58.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc----CCCeeeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKNKF----GFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.++++||-.| +| .|..+..+++..  +.+|++++.+++.++.+++.+    |.+.+ ..... |+.+   ...
T Consensus       104 ~~~~~~~~~~VLD~G-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v-~~~~~-d~~~---~~~  176 (275)
T 1yb2_A          104 MRCGLRPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRS-DIAD---FIS  176 (275)
T ss_dssp             --CCCCTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECS-CTTT---CCC
T ss_pred             HHcCCCCcCEEEEec-CC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcE-EEEEC-chhc---cCc
Confidence            455788999999998 55 688888888873  569999999999998887433    54322 11111 2211   011


Q ss_pred             cCCcccc-----c-HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWVDFV-----G-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~d~~-----g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+.+|.+     - ...++.+.+.|+|+|++++
T Consensus       177 ~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i  209 (275)
T 1yb2_A          177 DQMYDAVIADIPDPWNHVQKIASMMKPGSVATF  209 (275)
T ss_dssp             SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEE
T ss_pred             CCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEE
Confidence            1123322     2 2477888888999986544

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=95.01  E-value=0.019  Score=44.47  Aligned_cols=35  Identities=14%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEK  120 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~  120 (192)
                      +|||+||+|.+|..+++.+...| .+|++++|++.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   36 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG   36 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            48999999999999998888889 799999987543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.00  E-value=0.035  Score=44.26  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|.+|.|+| .|.+|...++.++..|.+|++.++++++ +..+
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~  185 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK  185 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh
Confidence            578999999 8999999999999999999999998765 4443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.00  E-value=0.093  Score=38.19  Aligned_cols=96  Identities=15%  Similarity=0.040  Sum_probs=60.4

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      +...+.++++||-.| +| .|..+..+++. +.+|++++.+++.++.+++.   .|.+.+ ..... +..+....  .+.
T Consensus        71 ~~l~~~~~~~vLdiG-~G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~~~~--~~~  143 (210)
T 3lbf_A           71 ELLELTPQSRVLEIG-TG-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNV-STRHG-DGWQGWQA--RAP  143 (210)
T ss_dssp             HHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEES-CGGGCCGG--GCC
T ss_pred             HhcCCCCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCce-EEEEC-CcccCCcc--CCC
Confidence            556788999999999 66 58888888888 78999999999998888743   344321 11111 21111111  112


Q ss_pred             ccc-----ccHHHHHHHHHhhcCCCeEEEee
Q 029543          154 VDF-----VGIEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       154 ~d~-----~g~~~~~~~~~~l~~~G~v~~G~  179 (192)
                      +|.     +-....+...+.|+|+|++++..
T Consensus       144 ~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPTALMTQLDEGGILVLPV  174 (210)
T ss_dssp             EEEEEESSBCSSCCTHHHHTEEEEEEEEEEE
T ss_pred             ccEEEEccchhhhhHHHHHhcccCcEEEEEE
Confidence            332     22223456789999999654443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.99  E-value=0.03  Score=44.56  Aligned_cols=42  Identities=17%  Similarity=0.159  Sum_probs=35.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|.+|.|+| .|.+|..+++.++..|.+|++.++++++.+.+.
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  195 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA  195 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH
Confidence            477999999 899999999999999999999998776555444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=94.98  E-value=0.043  Score=43.76  Aligned_cols=94  Identities=22%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhc-----CC-CeeeecCCcccHHHHHHhhccCC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKF-----GF-DDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~-----g~-~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ....++||.+|  +|.|..+..+++..+ .+|++++.+++-++.+++.+     |. +.-+..... |..+.+.....+.
T Consensus       118 ~~~~~~VLdIG--~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~-D~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIG--GGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-DGVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEET--CSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES-CHHHHHHTSCTTC
T ss_pred             CCCCCEEEEEC--CCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC-CHHHHHHhccCCC
Confidence            45678999999  335667778887765 49999999999988888433     21 111222222 4544443322122


Q ss_pred             c-----ccc---c-------HHHHHHHHHhhcCCCeEEE
Q 029543          154 V-----DFV---G-------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~-----d~~---g-------~~~~~~~~~~l~~~G~v~~  177 (192)
                      +     |..   +       ...++.+.+.|+|+|++++
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~  233 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  233 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            2     332   2       3477888999999997655

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=94.96  E-value=0.057  Score=41.87  Aligned_cols=94  Identities=17%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC------CeeeecCCcccHHHHHHhhccCC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLKNKFGF------DDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~------~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ..++++||+.|  +|.|..+..+++..+ .+|++++.+++-.+.+++.+..      +.-++.... |..+.+... .+.
T Consensus        76 ~~~~~~VLdiG--~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~~~-~~~  151 (283)
T 2i7c_A           76 SKEPKNVLVVG--GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-DASKFLENV-TNT  151 (283)
T ss_dssp             SSSCCEEEEEE--CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-CHHHHHHHC-CSC
T ss_pred             CCCCCeEEEEe--CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEEC-ChHHHHHhC-CCC
Confidence            34678999998  345667777777654 4999999999999998854432      111111122 444444332 222


Q ss_pred             c-----cc---cc-------HHHHHHHHHhhcCCCeEEEe
Q 029543          154 V-----DF---VG-------IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       154 ~-----d~---~g-------~~~~~~~~~~l~~~G~v~~G  178 (192)
                      +     |.   .+       .+.++.+.+.|+|+|++++-
T Consensus       152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            2     32   11       25778888999999965543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.96  E-value=0.17  Score=41.52  Aligned_cols=46  Identities=28%  Similarity=0.291  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEeC----------CHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVV-GSAG----------SKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi-~~~~----------~~~~~~~~~~~~g  129 (192)
                      .|.+|+|.| .|.+|..+++++...|++|+ ++++          +.+++..++++.|
T Consensus       217 ~gk~vaVqG-~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g  273 (419)
T 3aoe_E          217 RGARVVVQG-LGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG  273 (419)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS
T ss_pred             cCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC
Confidence            689999999 99999999999999999988 6665          5566666664444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.96  E-value=0.068  Score=41.00  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=37.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +|.|+| +|.+|...++.....|.+|++.++++++.+.++ +.|.
T Consensus         2 ~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~   44 (279)
T 2f1k_A            2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQL   44 (279)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTS
T ss_pred             EEEEEc-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCC
Confidence            589999 899999999888888999999999999988887 6665

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.94  E-value=0.036  Score=42.29  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~  118 (192)
                      +.+|+|.| +|++|..+++.+...|. ++++++++.
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            57899999 89999999998888898 899999886

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=94.92  E-value=0.036  Score=44.84  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+.+|++|+|.| +|.+|.++++.++.+|.+|++++.++
T Consensus        10 ~~~~~k~IlIlG-~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           10 IILPGKTIGIIG-GGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            456899999999 89999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	1e-11
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	2e-09
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	9e-09
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-07
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	2e-07
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	2e-07
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-07
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	3e-06
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	4e-06
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	4e-06
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-04
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	2e-04
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	5e-04
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	8e-04
d1vj1a1	166	b.35.1.2 (A:-1-124,A:312-351) Putative zinc-bindin	0.002

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 46/101 (45%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
           MP +TA+ GL E+C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK
Sbjct: 12  MPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 71

Query: 126 NKFGFDDAFNYK---EEPDLDVALKRMFLCWVDFVGIEYCR 163
                           E  L  A    + C+ D VG E+  
Sbjct: 72  QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLN 112

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 66  MPSVTAFAGLYEICSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVD 122
           MP +T+  G+ E      G  + + VS A+GA G L GQ   L GC  VVG  G++EK  
Sbjct: 11  MPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCL 70

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKRMFLCW 153
            L ++ GFD A NYK     +   +      
Sbjct: 71  FLTSELGFDAAVNYKTGNVAEQLREACPGGV 101

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 50.4 bits (119), Expect = 9e-09
 Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 1/96 (1%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            T +    ++    +G    V    G    ++          ++G   +K+K    K   
Sbjct: 14  STGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-V 72

Query: 129 GFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRS 164
           G  +  N ++       +             E    
Sbjct: 73  GATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGR 108

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 64  VIMPSVTAFAGLYEICSPKKGEYVYV-SAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
           + +  +TA+  L        G+  ++ +  + AVG+   Q  KL   + +     +  +D
Sbjct: 9   ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68

Query: 123 LL---KNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFVGI 159
            +     + G        +    +                
Sbjct: 69  EVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA 108

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 66  MPSVTAFAGLY---EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
               TA   ++   +     +   V V+ A+G VG +        G  VV S G++E  D
Sbjct: 3   TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD 62

Query: 123 LLKNKFGFDDAFNYKE--EPDLDVALKRMFLCWVDFVGIEY 161
            L  + G  +  + ++  +  L    K+ +   VD VG + 
Sbjct: 63  YL-KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQ 102

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 66  MPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK 125
             ++     L +     +   + V+ ASG VG          G  VV  +G +   + LK
Sbjct: 14  FTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK 73

Query: 126 N 126
           +
Sbjct: 74  S 74

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            T +         + G    V    G    ++          ++G   +K+K    K +F
Sbjct: 14  STGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF 72

Query: 129 GFDDAFNYKEEP-DLDVALKRMFLCWVDF 156
           G  +  N ++    +   L  M    VD+
Sbjct: 73  GATECINPQDFSKPIQEVLIEMTDGGVDY 101

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 1/85 (1%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            T F         + G    V          V          ++    + +K +  K  F
Sbjct: 14  STGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF 72

Query: 129 GFDDAFNYKEEPDLDVALKRMFLCW 153
           G  D  N  +  +    +       
Sbjct: 73  GATDFVNPNDHSEPISQVLSKMTNG 97

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 1/94 (1%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            T +           G    V    G VG       K AG   +   G+ +       + 
Sbjct: 13  ATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71

Query: 129 GFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYC 162
           G  +  N K+       +            +E  
Sbjct: 72  GATECLNPKDYDKPIYEVICEKTNGGVDYAVECA 105

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            T                     A GAVG      AK+ G  ++ +    E    L  + 
Sbjct: 14  QTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 72

Query: 129 GFDDAFNYKEEPDLDVALKRMFLCWVDFV 157
           G     N K + D   A+K +    V+F 
Sbjct: 73  GATHVINSKTQ-DPVAAIKEITDGGVNFA 100

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 1/94 (1%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            T +    +    K G    V    G VG  V    K AG   +      +         
Sbjct: 15  STGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73

Query: 129 GFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYC 162
           G  +  + K+       +             E  
Sbjct: 74  GATECISPKDSTKPISEVLSEMTGNNVGYTFEVI 107

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 63  GVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
              +  +T +  L +    K  E     AA+G VG +  Q+AK  G  ++G+ G+ +K  
Sbjct: 8   ASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ 67

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKRM 149
               K G     NY+EE DL   LK +
Sbjct: 68  SAL-KAGAWQVINYREE-DLVERLKEI 92

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 1/96 (1%)

Query: 69  VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF 128
            + +           G    V    G VG       K+AG   + +     +        
Sbjct: 14  SSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 72

Query: 129 GFDDAFNYKEEPDLDVALKRMFLCWVDFVGIEYCRS 164
           G  D  N +E       +            ++   +
Sbjct: 73  GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGT 108

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 66  MPSVTAFAGLY---EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD 122
               TA   ++   E     +   V V+ A+G VG L        G  V  S G   + D
Sbjct: 11  TAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD 70

Query: 123 LLKNKFGFDDAFNYKEEPDLDVALKRM-FLCWVDFVGIEYCR 163
            L+     +         +    L +  +   VD VG     
Sbjct: 71  YLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLA 112

>d1vj1a1 b.35.1.2 (A:-1-124,A:312-351) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 166

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 4/54 (7%), Positives = 12/54 (22%)

Query: 40  CDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSAAS 93
            D    +++                 + ++               + V +S  S
Sbjct: 111 LDGNGLEKVDPQLVDGLKVKETVAKGLENMGVAFQSMMTGGNVGKQIVCISEDS 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.92
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.91
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.9
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.9
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.9
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.89
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.89
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.88
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.88
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.87
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.87
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.87
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.86
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.86
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.86
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.85
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.84
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.84
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.84
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.83
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.6
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	98.37
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.28
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.26
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.24
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.23
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.15
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.15
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.15
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.13
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.13
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.12
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.11
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.11
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.1
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.08
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.07
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.06
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.06
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.06
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.05
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.03
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.03
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.01
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.01
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.98
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	97.98
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	97.97
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.96
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.95
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.93
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.9
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.85
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.84
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.83
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.82
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.82
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	97.82
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.81
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.8
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.78
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.78
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.77
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.76
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.75
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	97.74
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.74
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.72
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.7
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.69
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.67
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.65
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.6
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.6
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.59
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.56
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.56
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.55
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.52
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.5
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.48
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.48
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.47
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.45
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.45
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.45
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.43
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.41
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.4
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	97.39
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.38
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.37
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.34
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.29
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.28
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.28
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.28
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.28
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.28
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.25
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.24
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.23
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.22
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.22
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.19
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	97.15
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.12
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.1
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.07
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.01
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.01
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.96
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.9
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.88
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.85
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.84
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.82
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.81
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.81
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.79
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.78
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.72
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.71
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.69
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.69
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.68
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.68
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.58
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.54
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.53
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.47
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.46
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.46
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.39
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.34
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.33
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.3
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.29
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	96.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.22
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.15
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.07
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	96.05
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.01
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.99
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.96
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.96
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.93
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.93
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.89
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.89
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.88
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.86
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.86
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.86
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.85
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.81
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.8
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	95.79
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.78
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.76
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.75
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.68
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	95.61
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	95.6
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.58
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.57
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.53
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.43
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.41
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.35
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.32
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.31
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	95.28
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.28
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.26
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.16
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.09
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.09
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.08
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	95.05
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.0
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.97
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.9
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.89
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	94.89
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.82
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.76
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	94.74
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.74
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.73
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.61
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.59
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.54
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.52
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	94.48
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	94.45
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	94.36
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.24
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.21
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.16
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.12
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.1
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.09
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.05
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.04
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.04
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.98
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.95
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	93.86
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	93.86
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.84
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	93.83
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.8
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.73
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.67
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.65
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.6
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.55
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.54
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	93.52
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.51
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.5
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.47
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.47
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	93.43
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.3
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.3
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.3
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.28
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	93.28
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	93.27
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	93.27
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	93.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.18
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.15
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	93.14
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.08
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.04
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.99
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.94
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.94
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	92.9
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.78
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.72
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.68
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.61
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.6
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.56
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	92.55
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.42
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.4
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	92.4
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.38
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.38
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.33
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.28
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.27
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	92.27
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.25
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	92.18
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.08
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.01
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.99
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.92
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.89
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	91.87
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.81
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.8
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.77
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	91.67
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.66
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.65
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.55
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.53
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.49
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.47
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.45
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.36
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	91.3
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.28
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.99
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.94
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.81
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.8
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.67
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	90.63
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.54
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	90.52
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	90.47
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.44
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	90.38
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	90.26
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.26
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.24
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	90.24
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.23
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.03
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.95
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	89.93
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	89.9
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.6
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.58
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.41
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.41
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	89.33
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	89.33
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.07
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	88.99
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	88.94
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.83
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	88.71
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	88.61
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.54
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	88.52
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.42
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.37
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.28
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	88.26
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.21
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.86
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	87.68
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.6
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	87.38
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	87.14
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	87.01
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	86.86
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	86.62
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	86.59
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.52
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	86.5
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	86.44
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	86.39
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.37
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	86.37
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.25
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.25
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	86.18
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.13
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.05
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	86.04
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	85.89
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	85.89
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.87
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.83
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	85.76
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	85.72
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	85.7
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.4
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.3
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	85.12
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	84.67
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	84.62
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.58
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.21
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	84.12
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.09
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	83.87
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.77
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	83.58
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	83.57
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	83.52
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	83.22
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	83.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.13
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	83.06
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	82.99
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	82.98
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	82.53
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.47
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	82.45
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	82.02
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.94
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.78
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	81.54
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	81.23
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.42
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	80.06

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.4e-26  Score=165.21  Aligned_cols=117  Identities=32%  Similarity=0.358  Sum_probs=107.8

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||++|++..++++||+|+|+||+|++|++++|+||..|++|++++++++|+++++ ++|++++||++++ ++.+
T Consensus        10 ~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~lGa~~vi~~~~~-d~~~   87 (179)
T d1qora2          10 FLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYREE-DLVE   87 (179)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hcCCeEEEECCCC-CHHH
Confidence            6799999999988889999999999999999999999999999999999999999999999 9999999999998 9999


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      +++++|++ ++    |++|++++..++++++++|+ +.+|...+.
T Consensus        88 ~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  132 (179)
T d1qora2          88 RLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA  132 (179)
T ss_dssp             HHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC
T ss_pred             HHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCC
Confidence            99999977 65    89999999999999999995 566765544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=163.58  Aligned_cols=121  Identities=24%  Similarity=0.282  Sum_probs=108.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++.+.+++++|++|||+||+|++|++++|+||++|++|++++++++|++.++ ++|+++++|++++ ++.+
T Consensus        10 ~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~vi~~~~~-~~~~   87 (174)
T d1yb5a2          10 GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFNHREV-NYID   87 (174)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTST-THHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccc-ccCcccccccccc-cHHH
Confidence            7899999999988889999999999999999999999999999999999999999999999 9999999999988 9999


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCCCcccc
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGSTPIPF  188 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~  188 (192)
                      .+++.+++ ++    |++|++.++.++++++++|+ +.+|..+ +.++++
T Consensus        88 ~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~  136 (174)
T d1yb5a2          88 KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG-TIEINP  136 (174)
T ss_dssp             HHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS-CEEECT
T ss_pred             HhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCC-CCCCCH
Confidence            99998876 66    89999999999999999995 5777643 344443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=3.2e-25  Score=162.80  Aligned_cols=117  Identities=21%  Similarity=0.216  Sum_probs=108.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++++.+++++||+|||+||+|++|++++|+||.+|++|+++++++++.++++ ++|+++++|++++ ++.+
T Consensus         7 ~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~-~~Ga~~vi~~~~~-~~~~   84 (183)
T d1pqwa_           7 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEYVGDSRSV-DFAD   84 (183)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSEEEETTCS-THHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc-cccccccccCCcc-CHHH
Confidence            6799999999988889999999999999999999999999999999999999999999999 9999999999988 9999


Q ss_pred             HHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          145 ALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       145 ~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      .+++.+++ |+    |++|++.++.++++++++|+ +.+|..++.
T Consensus        85 ~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~  129 (183)
T d1pqwa_          85 EILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVY  129 (183)
T ss_dssp             HHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGT
T ss_pred             HHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCC
Confidence            99999876 76    99999999999999999995 677766543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.92  E-value=5.2e-25  Score=161.81  Aligned_cols=118  Identities=46%  Similarity=0.605  Sum_probs=106.2

Q ss_pred             CCCchhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           62 GGVIMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        62 g~~~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      +..+++++|||+++++.+++++||+|||+||+|++|++++|+||..|++||+++++++|.++++ ++|++++|+++++ +
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~-~~Ga~~vi~~~~~-~   85 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTV-N   85 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTSC-S
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH-hhhhhhhcccccc-c
Confidence            3447899999999988999999999999999999999999999999999999999999999999 9999999999988 7


Q ss_pred             HHHHHHhhccC-Cc----ccccHHHHHHHHHhhcCCCe-EEEeeCC
Q 029543          142 LDVALKRMFLC-WV----DFVGIEYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       142 ~~~~i~~~~~~-g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +.+.+.+.+.+ |+    |++|++.++.++++++++|+ +.+|..+
T Consensus        86 ~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~  131 (182)
T d1v3va2          86 SLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAIS  131 (182)
T ss_dssp             CHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGG
T ss_pred             HHHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeeccee
Confidence            77777666655 66    99999999999999999995 6788643

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-24  Score=159.05  Aligned_cols=122  Identities=32%  Similarity=0.463  Sum_probs=103.2

Q ss_pred             CCCCCchhHHHHHHHHHHHhCCCCC--CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeec
Q 029543           60 CPGGVIMPSVTAFAGLYEICSPKKG--EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        60 ~~g~~~~~~~ta~~~l~~~~~~~~g--~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~  136 (192)
                      ..|..+++++|||+++++..++++|  ++|||+||+|++|++++|+||..|+ +|+++++++++.+.+.+++|+|+++|+
T Consensus         5 ~~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~   84 (187)
T d1vj1a2           5 FLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNY   84 (187)
T ss_dssp             GGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEET
T ss_pred             HHHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeec
Confidence            3444578999999999998899987  8999999999999999999999999 677778787777766548999999999


Q ss_pred             CCcccHHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCC
Q 029543          137 KEEPDLDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSG  182 (192)
Q Consensus       137 ~~~~~~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~  182 (192)
                      +++ ++.+.+++.++.|+    |++|++.++.++++++++|+ +.+|..++
T Consensus        85 ~~~-~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~  134 (187)
T d1vj1a2          85 KTG-NVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQ  134 (187)
T ss_dssp             TSS-CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC-----
T ss_pred             cch-hHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccc
Confidence            998 99999999887676    99999999999999999995 57787654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.90  E-value=3.6e-24  Score=156.27  Aligned_cols=117  Identities=22%  Similarity=0.216  Sum_probs=104.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +++++|+|+++ +.+++++||+|+|+| +|++|++++|+||.+|+ +|++++++++|++.++ ++|+++++|++++ ++.
T Consensus        10 ~~~~~ta~~a~-~~a~~~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lGa~~~i~~~~~-~~~   85 (174)
T d1jqba2          10 TDMMTTGFHGA-ELADIEMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYGATDILNYKNG-HIE   85 (174)
T ss_dssp             TTHHHHHHHHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHTCSEEECGGGS-CHH
T ss_pred             hhHHHHHHHHH-HHhCCCCCCEEEEEc-CCcchhhhhhhhhcccccccccccchhhhHHHHH-hhCccccccccch-hHH
Confidence            57999999999 778999999999999 79999999999999999 8999999999999999 9999999999987 899


Q ss_pred             HHHHhhccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCc
Q 029543          144 VALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTP  185 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~  185 (192)
                      +.+++.+++ |+    |++|+ ..+++++++++++|+ +++|.......
T Consensus        86 ~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~  134 (174)
T d1jqba2          86 DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDA  134 (174)
T ss_dssp             HHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSE
T ss_pred             HHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCc
Confidence            999999877 66    89995 589999999999995 57787654433

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.3e-23  Score=152.02  Aligned_cols=121  Identities=22%  Similarity=0.284  Sum_probs=105.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +|+++|||+++ +++++++|++|+|.| +|++|++++|++|.+|++|++++++++|+++++ ++|+++++|++++ ++.+
T Consensus        10 ~ca~~Ta~~al-~~~~~~~g~~VlV~G-aG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~~~-~~~~   85 (166)
T d1llua2          10 LCAGVTVYKGL-KQTNARPGQWVAISG-IGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KLGASLTVNARQE-DPVE   85 (166)
T ss_dssp             GTHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEETTTS-CHHH
T ss_pred             HHHHHHHHHHH-HHhCCCCCCEEEEee-ccccHHHHHHHHHHcCCccceecchhhHHHhhh-ccCccccccccch-hHHH
Confidence            78999999999 568999999999999 699999999999999999999999999999999 9999999999988 8888


Q ss_pred             HHHhhccCCc---c-cccHHHHHHHHHhhcCCCe-EEEeeCCCCCccccc
Q 029543          145 ALKRMFLCWV---D-FVGIEYCRSLLLVLLFRPL-KIMENDSGSTPIPFA  189 (192)
Q Consensus       145 ~i~~~~~~g~---d-~~g~~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~  189 (192)
                      .+++.+.++.   + +.+++.+++++++++++|+ +++|...++.++|+.
T Consensus        86 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  135 (166)
T d1llua2          86 AIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIF  135 (166)
T ss_dssp             HHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHH
T ss_pred             HHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHH
Confidence            8887765522   4 4457899999999999995 688887776666654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.90  E-value=1.1e-23  Score=153.66  Aligned_cols=123  Identities=16%  Similarity=0.124  Sum_probs=103.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +|.+.|+|+++.+.+++++||+|+|+| +|++|++++|++|++|+ +|++++++++|++.++ ++|+++++|+...++..
T Consensus        10 ~Ca~~T~~~a~~~~a~v~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~Ga~~~i~~~~~~~~~   87 (174)
T d1e3ia2          10 GCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALGATDCLNPRELDKPV   87 (174)
T ss_dssp             GTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSSCH
T ss_pred             hhHHHHHHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-HhCCCcccCCccchhhh
Confidence            789999999987889999999999999 89999999999999999 8999999999999999 99999999876432344


Q ss_pred             HHHHhhc-cCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCCCccccc
Q 029543          144 VALKRMF-LCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGSTPIPFA  189 (192)
Q Consensus       144 ~~i~~~~-~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~~~~~~~  189 (192)
                      +.+.+.+ ++|+    |++|. .++++++++++++ |+ +++|...++.++|..
T Consensus        88 ~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~  141 (174)
T d1e3ia2          88 QDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTV  141 (174)
T ss_dssp             HHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHH
T ss_pred             hhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchH
Confidence            4444444 3366    89995 5999999999996 85 578887776666644

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=3.5e-24  Score=156.31  Aligned_cols=123  Identities=19%  Similarity=0.181  Sum_probs=98.5

Q ss_pred             chhHHHHHHHHH---HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLY---EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~---~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      +++++|||++++   +..+.++|++|||+||+|++|.+++|+||.+|++|++++++++|.++++ ++|+++++|+++  +
T Consensus        10 ~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~lGa~~vi~~~~--~   86 (176)
T d1xa0a2          10 GTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEVLARED--V   86 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEEEECC----
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hcccceeeecch--h
Confidence            668999997754   4577889999999999999999999999999999999999999999999 999999999864  4


Q ss_pred             HHHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Ccccccc
Q 029543          142 LDVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPFAF  190 (192)
Q Consensus       142 ~~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~~~  190 (192)
                      +.+.++...++++    |++|++.+..++++|+++|+ +.+|..+++ .++|+..
T Consensus        87 ~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~  141 (176)
T d1xa0a2          87 MAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHP  141 (176)
T ss_dssp             -------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHH
T ss_pred             HHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccCcccCCCHHH
Confidence            4555554444466    99999999999999999995 578887554 4566543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.6e-23  Score=152.58  Aligned_cols=120  Identities=19%  Similarity=0.231  Sum_probs=102.7

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .|+++|||+++.+..++++|++|+|+| +|++|++++|+||++|+ +|++++++++|++.++ ++|+++++|++++ ++.
T Consensus        10 ~c~~~ta~~al~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~-~~~   86 (182)
T d1vj0a2          10 MCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTLNRRET-SVE   86 (182)
T ss_dssp             TTHHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEEETTTS-CHH
T ss_pred             hcHHHHHHHHHHHHhCCCCCCEEEEEC-CCccchhheecccccccccccccccccccccccc-cccceEEEecccc-chH
Confidence            678999999998888899999999999 69999999999999999 8999999999999999 9999999999877 554


Q ss_pred             H---HHHhhccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCccc
Q 029543          144 V---ALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIP  187 (192)
Q Consensus       144 ~---~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~  187 (192)
                      +   .+++.+.+ |+    |++|+ ..++.++++++++|+ +++|...+..+++
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~  140 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVP  140 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEE
T ss_pred             HHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccc
Confidence            4   45666655 65    89996 588999999999995 5788765544443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.89  E-value=8.3e-23  Score=148.90  Aligned_cols=121  Identities=17%  Similarity=0.087  Sum_probs=106.7

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +|.+.|||+++.+.+++++|++|+|+| +|++|++++|++|++|+ +|++++++++|+++++ ++|+++++|++++ ++.
T Consensus        10 ~ca~~Ta~~a~~~~~~~~~g~~VlI~G-~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~Ga~~~i~~~~~-~~~   86 (174)
T d1f8fa2          10 GCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVINSKTQ-DPV   86 (174)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHTCSEEEETTTS-CHH
T ss_pred             hhHHHHHHHHHHHhhCCCCCCEEEEeC-CCHHHhhhhhcccccccceeeeeccHHHHHHHHH-HcCCeEEEeCCCc-CHH
Confidence            778999999988889999999999999 69999999999999999 7888899999999999 9999999999988 999


Q ss_pred             HHHHhhccCCc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCC--Ccccc
Q 029543          144 VALKRMFLCWV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGS--TPIPF  188 (192)
Q Consensus       144 ~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~--~~~~~  188 (192)
                      +++++++++|+    |++|+ +.++.+++.++++|+ +++|.....  .++++
T Consensus        87 ~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~  139 (174)
T d1f8fa2          87 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDV  139 (174)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCH
T ss_pred             HHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCH
Confidence            99999987766    89995 688999999999995 577865433  34544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.89  E-value=1.2e-22  Score=148.09  Aligned_cols=122  Identities=17%  Similarity=0.132  Sum_probs=100.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCccc-H
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD-L  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~  142 (192)
                      .|++.|+|+++.+.+++++||+|+|+| +|++|++++|++|++|+ +|++++++++|+++++ ++|++++||++++++ +
T Consensus         9 gCa~~Ta~~a~~~~a~~~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~lGa~~~i~~~~~d~~~   86 (174)
T d1p0fa2           9 GCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELGATECLNPKDYDKPI   86 (174)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSSCH
T ss_pred             hhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHHHHHH-HcCCcEEEcCCCchhHH
Confidence            789999999987889999999999999 79999999999999998 8999999999999999 999999999876523 4


Q ss_pred             HHHHHhhccCCc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCCCcccc
Q 029543          143 DVALKRMFLCWV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGSTPIPF  188 (192)
Q Consensus       143 ~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~~~~~~  188 (192)
                      .+..+..+++|+    |++|+ ..++.++..++++ |+ +++|......++|+
T Consensus        87 ~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~  139 (174)
T d1p0fa2          87 YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPL  139 (174)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEE
T ss_pred             HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCcccccc
Confidence            444444444465    88885 5888999988775 75 57787666555554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=1.2e-22  Score=147.44  Aligned_cols=123  Identities=17%  Similarity=0.154  Sum_probs=109.2

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      +|++.|||+++ ++.++++||+|+|+|++|++|++++|++++.|+ +|++++++++|+++++ ++|+++++|++++ ++.
T Consensus        10 ~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~~i~~~~~-~~~   86 (170)
T d1jvba2          10 TCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINASMQ-DPL   86 (170)
T ss_dssp             GTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEETTTS-CHH
T ss_pred             HHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCceeeccCCc-CHH
Confidence            77999999999 678999999999999889999999999999997 9999999999999999 9999999999888 898


Q ss_pred             HHHHhhccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCcccccc
Q 029543          144 VALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPFAF  190 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~~  190 (192)
                      +.+++.+.+ ++    |++|+ ..++.++++++++|+ +++|..+++.++++..
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~  140 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPL  140 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHH
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHH
Confidence            888888766 55    89985 588999999999995 5788877777776543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=3.7e-23  Score=150.39  Aligned_cols=117  Identities=27%  Similarity=0.338  Sum_probs=93.4

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++ +.+++++||+|+|+||+|++|++++|+||++|++|++++++++|++.++ ++|+++++|+.+   ..+
T Consensus        10 ~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~lGa~~~i~~~~---~~~   84 (171)
T d1iz0a2          10 PVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAE---VPE   84 (171)
T ss_dssp             HHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEEEGGG---HHH
T ss_pred             HHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-ccccceeeehhh---hhh
Confidence            67999999999 5689999999999999999999999999999999999999999999999 999999999863   333


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Cccccc
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPFA  189 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~~  189 (192)
                      .+..  ..|+    |++| +.++.++++++++|+ +.+|..++. .++++.
T Consensus        85 ~~~~--~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~  132 (171)
T d1iz0a2          85 RAKA--WGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPL  132 (171)
T ss_dssp             HHHH--TTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC-------CCCCTT
T ss_pred             hhhc--cccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCCCCCCccHH
Confidence            3322  1255    8887 578999999999995 688887654 455543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.6e-22  Score=143.97  Aligned_cols=122  Identities=18%  Similarity=0.167  Sum_probs=103.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .+|+++|||++ +++++++||+|+|+| +|++|++++|+++++|+ +|++++++++|++.++ ++|+++++++.++ +..
T Consensus         9 ~epla~a~~a~-~~~~~~~gd~VlI~G-~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~~-~~~   84 (171)
T d1pl8a2           9 IEPLSVGIHAC-RRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQISKE-SPQ   84 (171)
T ss_dssp             HHHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECSSC-CHH
T ss_pred             HHHHHHHHHHH-HHhCCCCCCEEEEEC-CCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhCCccccccccc-ccc
Confidence            56899999999 678999999999999 79999999999999999 8999999999999999 9999999998876 665


Q ss_pred             HHHHhhc--cC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCcccccc
Q 029543          144 VALKRMF--LC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPFAF  190 (192)
Q Consensus       144 ~~i~~~~--~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~~  190 (192)
                      +..+...  .+ ++    |++|+ ..++.++++++++|+ +++|..+.+.++|+..
T Consensus        85 ~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~  140 (171)
T d1pl8a2          85 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLH  140 (171)
T ss_dssp             HHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHH
T ss_pred             cccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHH
Confidence            5544332  22 43    89995 588999999999995 5778877777777654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.87  E-value=3.7e-22  Score=144.68  Aligned_cols=122  Identities=17%  Similarity=0.147  Sum_probs=99.9

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecC--CcccH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYK--EEPDL  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~--~~~~~  142 (192)
                      .+|++||||++ ++.++++||+|+|+| +|++|++++|++|++|++|++++++++|++.++ ++|++.+++.+  .+ +.
T Consensus         9 ~ePla~a~~a~-~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~-~~ga~~~~~~~~~~~-~~   84 (170)
T d1e3ja2           9 LEPLSVGVHAC-RRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDPAKE-EE   84 (170)
T ss_dssp             HHHHHHHHHHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEECCTTTS-CH
T ss_pred             HHHHHHHHHHH-HHhCCCCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHH-HcCCcEEEecccccc-cc
Confidence            56899999999 678999999999998 899999999999999999999999999999999 99999876543  22 33


Q ss_pred             ---HHHHHhhccCCc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCcccccc
Q 029543          143 ---DVALKRMFLCWV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPFAF  190 (192)
Q Consensus       143 ---~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~~  190 (192)
                         .+.+++..++++    |++|+ ..++.++++++++|+ +.+|...++.++|+..
T Consensus        85 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~  141 (170)
T d1e3ja2          85 SSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVN  141 (170)
T ss_dssp             HHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHH
T ss_pred             chhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHH
Confidence               344444444454    89996 478999999999995 5788777666676643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=7.2e-22  Score=146.37  Aligned_cols=116  Identities=22%  Similarity=0.162  Sum_probs=103.6

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .+++.|||+++ +.+++++||+|+|+| +|++|++++|++|++|+ +|++++++++|++.++ ++|+++++|+.++ ++.
T Consensus         8 ~d~~~ta~~a~-~~a~v~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~~-~~~   83 (195)
T d1kola2           8 SDILPTGYHGA-VTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQGFEIADLSLDT-PLH   83 (195)
T ss_dssp             GTHHHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCEEEETTSSS-CHH
T ss_pred             ccHHHHHHHHH-HHhCCCCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhhHhhh-hccccEEEeCCCc-CHH
Confidence            55899999999 678999999999999 79999999999999999 9999999999999999 9999999999888 999


Q ss_pred             HHHHhhccC-Cc----ccccH----------------HHHHHHHHhhcCCCe-EEEeeCCCCC
Q 029543          144 VALKRMFLC-WV----DFVGI----------------EYCRSLLLVLLFRPL-KIMENDSGST  184 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~----------------~~~~~~~~~l~~~G~-v~~G~~~~~~  184 (192)
                      +++.+++.+ |+    |++|.                ++++.++++++++|+ +++|...++.
T Consensus        84 ~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~  146 (195)
T d1kola2          84 EQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTED  146 (195)
T ss_dssp             HHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCC
T ss_pred             HHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCc
Confidence            999999877 66    78873                489999999999996 5788765443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.8e-23  Score=152.79  Aligned_cols=123  Identities=19%  Similarity=0.195  Sum_probs=98.7

Q ss_pred             chhHHHHHHHHH---HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCccc
Q 029543           65 IMPSVTAFAGLY---EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD  141 (192)
Q Consensus        65 ~~~~~ta~~~l~---~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  141 (192)
                      ++++.|||++++   +......+++|||+||+|++|.+++|+||.+|++||+++++++|.+.++ ++|+|+++|++++ +
T Consensus        10 g~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~-~lGad~vi~~~~~-~   87 (177)
T d1o89a2          10 GTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGASRVLPRDEF-A   87 (177)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTEEEEEEGGGS-S
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH-hhccccccccccH-H
Confidence            668899997764   2333445669999999999999999999999999999999999999999 9999999999865 5


Q ss_pred             HHHHHHhhccC-CcccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Cccccc
Q 029543          142 LDVALKRMFLC-WVDFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPFA  189 (192)
Q Consensus       142 ~~~~i~~~~~~-g~d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~~  189 (192)
                      +.+.+.+...+ .+|++|++.+...+++++++|+ +.+|..++. .++|+.
T Consensus        88 ~~~~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~  138 (177)
T d1o89a2          88 ESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVM  138 (177)
T ss_dssp             SCCSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSH
T ss_pred             HHHHHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCccccccHH
Confidence            54433333333 3399999999999999999995 688887664 455543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.87  E-value=7.9e-22  Score=143.93  Aligned_cols=121  Identities=17%  Similarity=0.109  Sum_probs=101.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .|++.|+|+++.+.+++++||+|+|+| +|++|++++|++|++|+ +||+++++++|++.++ ++|++++||+++.++..
T Consensus        11 ~Ca~~T~~~Av~~~~~~~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~GA~~~in~~~~~~~~   88 (176)
T d1d1ta2          11 GCGFSTGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AVGATECISPKDSTKPI   88 (176)
T ss_dssp             GTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HHTCSEEECGGGCSSCH
T ss_pred             hhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hcCCcEEECccccchHH
Confidence            789999999987888999999999999 79999999999999997 9999999999999999 99999999987653445


Q ss_pred             HHHHhhccC-Cc----ccccH-HHHHHHHHhhcCC-Ce-EEEeeCCCCCccc
Q 029543          144 VALKRMFLC-WV----DFVGI-EYCRSLLLVLLFR-PL-KIMENDSGSTPIP  187 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~-G~-v~~G~~~~~~~~~  187 (192)
                      +.+.+.+.+ |+    |++|. ..++.++..++++ |+ +++|......+++
T Consensus        89 ~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~  140 (176)
T d1d1ta2          89 SEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLT  140 (176)
T ss_dssp             HHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEE
T ss_pred             HHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccC
Confidence            666666654 66    78885 5788888887666 75 6778776655443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=3.4e-23  Score=149.90  Aligned_cols=121  Identities=25%  Similarity=0.269  Sum_probs=95.5

Q ss_pred             hhHHHHHHH---HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccH
Q 029543           66 MPSVTAFAG---LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL  142 (192)
Q Consensus        66 ~~~~ta~~~---l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~  142 (192)
                      +++.|||.+   |.+....+++++|||+||+|++|.+++|+||++|++||+++++++|.++++ ++|+|+++++++  ..
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~-~lGad~vi~~~~--~~   79 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVISRED--VY   79 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEEEHHH--HC
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH-hhcccceEeccc--hh
Confidence            466777755   444455667889999999999999999999999999999999999999999 999999998753  12


Q ss_pred             HHHHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Cccccc
Q 029543          143 DVALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPFA  189 (192)
Q Consensus       143 ~~~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~~  189 (192)
                      .+.++...++++    |++|++.++.++++|+++|+ +.+|..++. .++|+.
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~  132 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVY  132 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSH
T ss_pred             chhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCCCcccCCHH
Confidence            222222223355    99999999999999999995 688887764 455554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.86  E-value=7.4e-22  Score=142.64  Aligned_cols=121  Identities=25%  Similarity=0.278  Sum_probs=106.1

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      +++++|||+++ +..++++|++|+|+| +|++|++++|+++..|++|++++++++|+++++ ++|++.++++.++ ++.+
T Consensus        10 ~~~~~Ta~~al-~~~~~~~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k-~~Ga~~~~~~~~~-~~~~   85 (168)
T d1rjwa2          10 FCAGVTTYKAL-KVTGAKPGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLKE-DAAK   85 (168)
T ss_dssp             GTHHHHHHHHH-HHHTCCTTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECTTTS-CHHH
T ss_pred             HHHHHHHHHHH-HHhCCCCCCEEEEee-cccchhhhhHHHhcCCCeEeccCCCHHHhhhhh-hcCcceecccccc-hhhh
Confidence            77999999999 678999999999998 799999999999999999999999999999999 9999999999988 9999


Q ss_pred             HHHhhccCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCCCccccc
Q 029543          145 ALKRMFLCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGSTPIPFA  189 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~  189 (192)
                      .+++.+.+..    |+.+++.++.++++++++|+ +++|...++.++++.
T Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~  135 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIF  135 (168)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHH
T ss_pred             hcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHH
Confidence            9998887622    55567899999999999995 577877666555543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=9.2e-23  Score=147.83  Aligned_cols=120  Identities=14%  Similarity=0.050  Sum_probs=98.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      .|++.|+|+++ ++.++++||+|+|+| +|++|++++|++|.+|++|++++++++|+++++ ++|+++++|+.+++++.+
T Consensus        10 ~cag~Ta~~al-~~~~~~~g~~vlI~G-aG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~lGa~~~i~~~~~~~~~~   86 (168)
T d1piwa2          10 LCGGLTVYSPL-VRNGCGPGKKVGIVG-LGGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGE   86 (168)
T ss_dssp             GTHHHHHHHHH-HHTTCSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEEGGGTSCHHH
T ss_pred             HHHHHHHHHHH-HHhCcCCCCEEEEEC-CCCcchhHHHHhhhccccccccccchhHHHHhh-ccCCcEEeeccchHHHHH
Confidence            77899999999 578999999999999 699999999999999999999999999999999 999999999875434443


Q ss_pred             HHHhhccC-Cc--ccccHH---HHHHHHHhhcCCCe-EEEeeCCCCCcccccc
Q 029543          145 ALKRMFLC-WV--DFVGIE---YCRSLLLVLLFRPL-KIMENDSGSTPIPFAF  190 (192)
Q Consensus       145 ~i~~~~~~-g~--d~~g~~---~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~~  190 (192)
                      .   ...+ ++  |+++..   .++.++++++++|+ +++|..+++.++|+..
T Consensus        87 ~---~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  136 (168)
T d1piwa2          87 K---YFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKP  136 (168)
T ss_dssp             H---SCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECG
T ss_pred             h---hhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHH
Confidence            2   2222 22  777632   57889999999995 6888877776666543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.85  E-value=4.5e-21  Score=139.29  Aligned_cols=120  Identities=20%  Similarity=0.264  Sum_probs=100.2

Q ss_pred             chhHHHHHHHHHHHh-CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccH
Q 029543           65 IMPSVTAFAGLYEIC-SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDL  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~-~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~  142 (192)
                      +++++||||++.+.. .+++|++|+|+| +|++|++++|+++++|+ +|++++++++|++.++ ++|+++++|++++ ++
T Consensus        13 ~~~~~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~-~~ga~~~i~~~~~-~~   89 (172)
T d1h2ba2          13 ADAGITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHVVDARRD-PV   89 (172)
T ss_dssp             GTHHHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSEEEETTSC-HH
T ss_pred             HhHHHHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHHHHHHh-hcccceeecCccc-HH
Confidence            779999999997655 479999999999 79999999999999998 8899999999999999 9999999998865 44


Q ss_pred             HHHHHhhccC-Cc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCCCccccc
Q 029543          143 DVALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGSTPIPFA  189 (192)
Q Consensus       143 ~~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~~~~~~~  189 (192)
                      . ...+.+.+ |+    |++|+ ..++.++++++++|+ +++|. .++.++|+.
T Consensus        90 ~-~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~-~~~~~~~~~  141 (172)
T d1h2ba2          90 K-QVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY-GGELRFPTI  141 (172)
T ss_dssp             H-HHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCC-SSCCCCCHH
T ss_pred             H-HHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeC-cccccCCHH
Confidence            4 44556655 65    89996 489999999999995 57785 345566654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.85  E-value=1.1e-20  Score=137.40  Aligned_cols=113  Identities=20%  Similarity=0.183  Sum_probs=95.7

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcc-cH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEP-DL  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~  142 (192)
                      +|++.|+|+++.+.+++++||+|+|+| +|++|++++|++|++|+ +|++++++++|+++++ ++|++++||+.+++ +.
T Consensus        10 ~ca~~Tay~al~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak-~lGa~~~i~~~~~~~~~   87 (176)
T d2fzwa2          10 GCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGATECINPQDFSKPI   87 (176)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTCSEEECGGGCSSCH
T ss_pred             hcHHHHHHHHHHHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH-HhCCcEEEeCCchhhHH
Confidence            789999999997888999999999999 68999999999999998 8999999999999999 99999999986432 56


Q ss_pred             HHHHHhhccCCc----ccccH-HHHHHHHHhhcCCC-eEEEee
Q 029543          143 DVALKRMFLCWV----DFVGI-EYCRSLLLVLLFRP-LKIMEN  179 (192)
Q Consensus       143 ~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G-~v~~G~  179 (192)
                      .+.+++.+++|+    |++|+ ..++.++.+++++| .+.++.
T Consensus        88 ~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~  130 (176)
T d2fzwa2          88 QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG  130 (176)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEe
Confidence            666666665566    89995 57788999999987 445543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-21  Score=141.61  Aligned_cols=111  Identities=20%  Similarity=0.233  Sum_probs=92.7

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDV  144 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~  144 (192)
                      .|++.|+|+++ +.+++++||+|+|+| +|++|++++|+||++|+++++++++++|+++++ ++|+|+++|+.++ +...
T Consensus        13 ~Cag~Tay~al-~~~~~~~G~~VlI~G-aG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~-~lGad~~i~~~~~-~~~~   88 (168)
T d1uufa2          13 LCAGITTYSPL-RHWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVVNSRNA-DEMA   88 (168)
T ss_dssp             GTHHHHHHHHH-HHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEETTCH-HHHH
T ss_pred             HhHHHHHHHHH-HHhCCCCCCEEEEec-cchHHHHHHHHhhcccccchhhccchhHHHHHh-ccCCcEEEECchh-hHHH
Confidence            67899999999 678999999999999 699999999999999999899999999999999 9999999999875 4332


Q ss_pred             HHHhhccCCc----ccccH-HHHHHHHHhhcCCCe-EEEeeCCCC
Q 029543          145 ALKRMFLCWV----DFVGI-EYCRSLLLVLLFRPL-KIMENDSGS  183 (192)
Q Consensus       145 ~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G~-v~~G~~~~~  183 (192)
                      ..   .. ++    |++|+ ..++.++++++++|+ +.+|..+++
T Consensus        89 ~~---~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~  129 (168)
T d1uufa2          89 AH---LK-SFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP  129 (168)
T ss_dssp             TT---TT-CEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC---
T ss_pred             Hh---cC-CCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCC
Confidence            11   11 33    89985 489999999999995 577876554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.84  E-value=8.2e-21  Score=138.10  Aligned_cols=117  Identities=19%  Similarity=0.109  Sum_probs=96.8

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHH
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  143 (192)
                      .|++.|+|+++.+.+++++||+|+|+| +|++|.+++++++..|+ +|++++++++|++.++ ++|+|++||+.+++++.
T Consensus        10 ~ca~~Tay~a~~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~GAd~~in~~~~~~~~   87 (175)
T d1cdoa2          10 GCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFVNPNDHSEPI   87 (175)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCCEEECGGGCSSCH
T ss_pred             hcHHHHHHHHHHHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchheeecchHHHHHHHH-HcCCcEEEcCCCcchhH
Confidence            779999999998888999999999999 79999999999999988 8999999999999999 99999999987653455


Q ss_pred             HHHHhhccC-Cc----ccccH-HHHHHHHHhhcCCC-eEE-EeeCCCC
Q 029543          144 VALKRMFLC-WV----DFVGI-EYCRSLLLVLLFRP-LKI-MENDSGS  183 (192)
Q Consensus       144 ~~i~~~~~~-g~----d~~g~-~~~~~~~~~l~~~G-~v~-~G~~~~~  183 (192)
                      +++++.+.+ |+    |++|+ .++..++.+++++| +++ +|...+.
T Consensus        88 ~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~  135 (175)
T d1cdoa2          88 SQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH  135 (175)
T ss_dssp             HHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSS
T ss_pred             HHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCc
Confidence            556655544 55    89995 57888899988876 554 4444433

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.84  E-value=7.2e-21  Score=140.25  Aligned_cols=124  Identities=18%  Similarity=0.187  Sum_probs=99.0

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEe-CCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCCeeeecCCc
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVS-AASGAVGQLVGQFAKLAGCHVVGSAGSKE----KVDLLKNKFGFDDAFNYKEE  139 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~-Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~~~~~g~~~vi~~~~~  139 (192)
                      +++++|||+++.+..++++|++|+|+ ||+|++|++++|+||++|++||+++++++    +.+.++ ++|+|++|+++++
T Consensus        10 ~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~-~lGad~vi~~~~~   88 (189)
T d1gu7a2          10 SVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGATQVITEDQN   88 (189)
T ss_dssp             TTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCSEEEEHHHH
T ss_pred             hhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhh-hccccEEEecccc
Confidence            67999999999888899999988885 77999999999999999999999986643    455677 9999999987532


Q ss_pred             --ccHHHHHHhhc---cCCc----ccccHHHHHHHHHhhcCCCe-EEEeeCCCC-Cccccc
Q 029543          140 --PDLDVALKRMF---LCWV----DFVGIEYCRSLLLVLLFRPL-KIMENDSGS-TPIPFA  189 (192)
Q Consensus       140 --~~~~~~i~~~~---~~g~----d~~g~~~~~~~~~~l~~~G~-v~~G~~~~~-~~~~~~  189 (192)
                        .++.+.+++.+   ++++    |++|++.+..++++|+++|+ |.+|..++. .++|..
T Consensus        89 ~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~  149 (189)
T d1gu7a2          89 NSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTS  149 (189)
T ss_dssp             HCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHH
T ss_pred             chhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCCCccCcHH
Confidence              14555555543   2244    99999999999999999995 688877654 445554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.83  E-value=5.2e-20  Score=134.00  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=95.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCccc-H
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPD-L  142 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~  142 (192)
                      +|++.|+|+++.+.+++++||+|+|+| +|++|++++|+++..|+ +|++++++++|+++++ ++|+++++++.+.++ +
T Consensus        10 ~ca~~Tay~al~~~~~vk~GdtVlV~G-aGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~-~~Ga~~~i~~~~~~~~~   87 (176)
T d2jhfa2          10 GCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVGATECVNPQDYKKPI   87 (176)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSSCH
T ss_pred             hcHHHHHHHHHHHhhCCCCCCEEEEEC-CCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH-HhCCeeEEecCCchhHH
Confidence            789999999998889999999999999 59999999999999997 9999999999999999 999999998754324 4


Q ss_pred             HHHHHhhccCCc----ccccH-HHHHHHHHhhcCCC-eEEEeeCC
Q 029543          143 DVALKRMFLCWV----DFVGI-EYCRSLLLVLLFRP-LKIMENDS  181 (192)
Q Consensus       143 ~~~i~~~~~~g~----d~~g~-~~~~~~~~~l~~~G-~v~~G~~~  181 (192)
                      .+.+++..++|+    |++|. ..++++++.++++| .++++...
T Consensus        88 ~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~  132 (176)
T d2jhfa2          88 QEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  132 (176)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             HHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCC
Confidence            444444444466    89985 57889999999975 66555543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1e-15  Score=95.56  Aligned_cols=65  Identities=23%  Similarity=0.287  Sum_probs=58.1

Q ss_pred             chhHHHHHHHHH---HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           65 IMPSVTAFAGLY---EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        65 ~~~~~ta~~~l~---~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +.++.|||.+++   +....+++++|+|+||+|++|.+++|++|.+|++|+++++++++.++++ ++|+
T Consensus        10 g~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~-~lGA   77 (77)
T d1o8ca2          10 GTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGA   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTE
T ss_pred             hhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-HCCC
Confidence            568889988765   3445688999999999999999999999999999999999999999999 8885

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.37  E-value=8.9e-08  Score=67.99  Aligned_cols=72  Identities=13%  Similarity=0.026  Sum_probs=55.5

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccC-CCCCchhHHHHHHHHHHHhCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFC-PGGVIMPSVTAFAGLYEICSPK   82 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~-~g~~~~~~~ta~~~l~~~~~~~   82 (192)
                      .++.|.+++|.+.+..|+..+|+++||++++...+.       .+|+..     ++. .....+++.|+|+++ +..++ 
T Consensus        98 ~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~-------~iP~~~-----~~e~aa~~~~~~~ta~~al-~~~~~-  163 (171)
T d1h2ba1          98 ACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVI-------KLPKDV-----RVEVDIHKLDEINDVLERL-EKGEV-  163 (171)
T ss_dssp             HHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEE-------ECCTTC-----CCCEEEEEGGGHHHHHHHH-HTTCC-
T ss_pred             cccccccccccccccceeecccccceeeeehhhcce-------ecCCCC-----CHHHHHHHHhHHHHHHHHH-HhcCC-
Confidence            367889999999999999999999999999987665       333321     111 111267999999999 66777 


Q ss_pred             CCCEEEE
Q 029543           83 KGEYVYV   89 (192)
Q Consensus        83 ~g~~VlV   89 (192)
                      .|++|||
T Consensus       164 ~G~~VlI  170 (171)
T d1h2ba1         164 LGRAVLI  170 (171)
T ss_dssp             SSEEEEE
T ss_pred             CCCEEEe
Confidence            8999998

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.28  E-value=8.2e-10  Score=78.87  Aligned_cols=87  Identities=13%  Similarity=0.044  Sum_probs=58.7

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC----------cccccCCCCC---------------------
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS----------LFYSFCPGGV---------------------   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~----------~~~~~~~g~~---------------------   64 (192)
                      .+....+.|...+++|||++.++++||.+...+.+....          ...++..|.+                     
T Consensus        21 l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v  100 (175)
T d1gu7a1          21 TQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWV  100 (175)
T ss_dssp             EEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEE
T ss_pred             EEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccccccccccccccccccccce
Confidence            344566777888999999999999999777554332100          0111112222                     


Q ss_pred             ----------------------------------chhHHHHHHHHHH-HhCCCCCCEEEEeC-CCchHHHHHHH
Q 029543           65 ----------------------------------IMPSVTAFAGLYE-ICSPKKGEYVYVSA-ASGAVGQLVGQ  102 (192)
Q Consensus        65 ----------------------------------~~~~~ta~~~l~~-~~~~~~g~~VlV~G-a~G~iG~~~~q  102 (192)
                                                        ++.++|||+++.. ..++++|++|+|+| |+|++|++++|
T Consensus       101 ~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         101 IPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eccccccccccceeeehhhhccCCCccchhhhhccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence                                              4556688887743 35789999999998 45889988776

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.26  E-value=5.5e-08  Score=69.47  Aligned_cols=77  Identities=6%  Similarity=0.016  Sum_probs=57.1

Q ss_pred             ccccchhhhhhhhccccc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCCchhHHHHHHHHHHHhCC
Q 029543            4 SIRNTSKRLCKIQNILKQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGVIMPSVTAFAGLYEICSP   81 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~ta~~~l~~~~~~   81 (192)
                      .|++|..++|.+....+. ..+|+++||++++...+.       .+|+..+. ....+     .+++.|+|+++ +.+++
T Consensus        98 ~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~-------~iP~~~~~~~aa~~-----~~~~~ta~~a~-~~~~~  164 (178)
T d1e3ja1          98 FCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCH-------KLPDNCNVKQLVTH-----SFKLEQTVDAF-EAARK  164 (178)
T ss_dssp             HHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEE-------ECCTTCCCGGGEEE-----EEEGGGHHHHH-HHHHH
T ss_pred             ccccCCccccccccceeccccccccceeeeeccccee-------eCCCCCCHHHHHHH-----HhHHHHHHHHH-HHhCC
Confidence            367889999999887765 578999999999987666       33322111 11112     56889999999 67899


Q ss_pred             CCCCEEEEeCCC
Q 029543           82 KKGEYVYVSAAS   93 (192)
Q Consensus        82 ~~g~~VlV~Ga~   93 (192)
                      ++|++|+|+||+
T Consensus       165 ~~g~~VlVig~C  176 (178)
T d1e3ja1         165 KADNTIKVMISC  176 (178)
T ss_dssp             CCTTCSEEEEEC
T ss_pred             CCCCEEEEEccc
Confidence            999999999964

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.24  E-value=6.9e-06  Score=61.50  Aligned_cols=50  Identities=20%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD  132 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  132 (192)
                      .|++++|+||+++||..+++.....|++|+.+++++++++.+.++++...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~   54 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERS   54 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence            58999999999999999999888899999999999999988877887654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=2.4e-06  Score=63.65  Aligned_cols=62  Identities=11%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~  144 (192)
                      .|++++|+||+++||..+++.....|++|+.++|++++++.+.+++++.. ..|..+++++.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~   66 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVER   66 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHH
Confidence            48999999999999999999888899999999999999998886777643 346555424433

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=2.7e-06  Score=57.45  Aligned_cols=85  Identities=15%  Similarity=0.098  Sum_probs=58.7

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCC-cccccCCCCC---------------
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFYSFCPGGV---------------   64 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~~~~~g~~---------------   64 (192)
                      |++.+.+..-.   .++....+.|.+.+++|+||+.++++|+.+.....+.... ...++.+|.+               
T Consensus         1 MkA~~~~~~G~---~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~VvGd~V~~~~~   77 (131)
T d1iz0a1           1 MKAWVLKRLGG---PLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVEGRRYAALVP   77 (131)
T ss_dssp             CEEEEECSTTS---CEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEETTEEEEEECS
T ss_pred             CcEEEEccCCC---CCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEeeccceEEEEec
Confidence            66655544321   2556667788888999999999999999776544433211 2344555555               


Q ss_pred             ------------------------------chhHHHHHHHHHHHhCCCCCCEEEEe
Q 029543           65 ------------------------------IMPSVTAFAGLYEICSPKKGEYVYVS   90 (192)
Q Consensus        65 ------------------------------~~~~~ta~~~l~~~~~~~~g~~VlV~   90 (192)
                                                    ++++.|||+++++++  +.|++||+.
T Consensus        78 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          78 QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence                                          789999999997655  459999873

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=3.3e-06  Score=62.95  Aligned_cols=64  Identities=20%  Similarity=0.426  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i  146 (192)
                      .|++++|+||+++||..+++.....|++|+.++|++++++.+.++++...   ..|..+++++.+.+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   69 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVL   69 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhh
Confidence            58999999999999999998888899999999999999988876776532   35555542343333

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.2e-06  Score=61.44  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=48.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD--AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~--vi~~~~~  139 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++.+.++++...  .+|..++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~   64 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW   64 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH
Confidence            69999999999999999999888899999999999999888875665433  3566555

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=4.5e-07  Score=65.46  Aligned_cols=74  Identities=11%  Similarity=-0.023  Sum_probs=53.8

Q ss_pred             ccccchhhhhhhhccc-------cccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchh-HHHHHHHH
Q 029543            4 SIRNTSKRLCKIQNIL-------KQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMP-SVTAFAGL   75 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~-------g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~-~~ta~~~l   75 (192)
                      .|+++.+++|.+....       |...+|+|+||++++..++.       .+|+...     +..+...++ +.|||+++
T Consensus       105 ~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~-------~iP~~l~-----~e~Aal~~~~~~ta~~~l  172 (192)
T d1piwa1         105 RCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVV-------PIPENIW-----VETLPVGEAGVHEAFERM  172 (192)
T ss_dssp             HHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEE-------ECCTTCC-----EEEEESSHHHHHHHHHHH
T ss_pred             hhhcCCcccccccccccccccccccccccceeeEEEeehHHeE-------ECCCCCC-----HHHHHHHHHHHHHHHHHH
Confidence            4788999999987654       66789999999999987665       3333211     111112445 57999999


Q ss_pred             HHHhCCCCCCEEEEe
Q 029543           76 YEICSPKKGEYVYVS   90 (192)
Q Consensus        76 ~~~~~~~~g~~VlV~   90 (192)
                       +.+++++|++|+|.
T Consensus       173 -~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         173 -EKGDVRYRFTLVGY  186 (192)
T ss_dssp             -HHTCCSSEEEEECC
T ss_pred             -HHhCCCCCCEEEEE
Confidence             67899999999986

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.6e-06  Score=62.21  Aligned_cols=64  Identities=17%  Similarity=0.174  Sum_probs=47.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~~~i  146 (192)
                      .|++++|+||++|||...+.-....|++|+.++|++++++.+.++   .|...   ..|..+.+++.+.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   75 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSA   75 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence            599999999999999988887778899999999999998877643   34332   34555542333333

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.13  E-value=4.5e-06  Score=62.63  Aligned_cols=63  Identities=13%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVA  145 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~  145 (192)
                      .|++++|+||+++||+.+++.....|++|++++|++++++.+.+++|...   ..|..+++++.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~   69 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRC   69 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHH
Confidence            58999999999999999999888899999999999999888877887653   3455554244433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.12  E-value=8.1e-06  Score=58.47  Aligned_cols=47  Identities=23%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      -.|++++|+||+|++|..+++.+...|++|+.++|++++.+.+.+++
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~   67 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV   67 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence            37999999999999999999999999999999999999988776443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.11  E-value=4.7e-06  Score=63.24  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~  139 (192)
                      .|++++|+||+++||..+++.....|++|++++|++++++.+.+++|...   ..|..++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~   63 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSL   63 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccH
Confidence            58999999999999999998888899999999999999888876776542   2355544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=5.3e-06  Score=61.85  Aligned_cols=64  Identities=14%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~i  146 (192)
                      .|++++|+||+++||+.+++.....|++|+.++|++++++.+.++++-..   ..|..+++++.+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   71 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAV   71 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHH
Confidence            58999999999999999998888899999999999999988876775432   24555542343333

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.10  E-value=5.3e-06  Score=58.04  Aligned_cols=88  Identities=17%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCcccHHHHHHhhccCCc-cc---cc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEEPDLDVALKRMFLCWV-DF---VG  158 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~i~~~~~~g~-d~---~g  158 (192)
                      .-+|+|.| +|-.|+.+++.|+.+|++|.+.|.+.++++.++..++... ....+++ .+.+.+++.  +-+ -+   -|
T Consensus        32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~-~l~~~~~~a--DivI~aalipG  107 (168)
T d1pjca1          32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSA-EIETAVAEA--DLLIGAVLVPG  107 (168)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHH-HHHHHHHTC--SEEEECCCCTT
T ss_pred             CcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhh-hHHHhhccC--cEEEEeeecCC
Confidence            46799999 8999999999999999999999999999999984444322 2323333 565555542  111 11   13


Q ss_pred             HH----HHHHHHHhhcCCCeE
Q 029543          159 IE----YCRSLLLVLLFRPLK  175 (192)
Q Consensus       159 ~~----~~~~~~~~l~~~G~v  175 (192)
                      ..    ..+..++.||||..+
T Consensus       108 ~~aP~lIt~~mv~~Mk~GSVI  128 (168)
T d1pjca1         108 RRAPILVPASLVEQMRTGSVI  128 (168)
T ss_dssp             SSCCCCBCHHHHTTSCTTCEE
T ss_pred             cccCeeecHHHHhhcCCCcEE
Confidence            21    557788999999953

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.1e-05  Score=59.94  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=46.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD--AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~--vi~~~~~  139 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++.+.++++...  .+|..++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~   62 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW   62 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH
Confidence            58999999999999999999888899999999999999888775664332  3455555

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.07  E-value=9.6e-06  Score=61.14  Aligned_cols=48  Identities=15%  Similarity=0.250  Sum_probs=43.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .|+++||+||+++||+.+++.....|++|+.+++++++++.+.++++.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~   52 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS   52 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC
Confidence            589999999999999999988888899999999999998888766654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.06  E-value=9.7e-06  Score=60.22  Aligned_cols=62  Identities=10%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~  144 (192)
                      .|++++|+||+++||...++-....|++|+.++|+.++++.+.++++.+.   ..|.++++++.+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~   68 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEA   68 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHH
Confidence            58999999999999999999888999999999999999888876888653   235555434433

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.06  E-value=6.8e-06  Score=61.62  Aligned_cols=62  Identities=19%  Similarity=0.199  Sum_probs=48.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe---eeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~  144 (192)
                      .|+++||+||+++||+.+++.....|++|+.++|++++++.+.++++...   ..|..+++++.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   68 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQR   68 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHH
Confidence            58999999999999999998888889999999999999888876776432   345554423433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.7e-06  Score=60.87  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe--eeecCCcccHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD--AFNYKEEPDLD  143 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~  143 (192)
                      .|++++|+||+++||..+++.....|++|++++|++++++.+.++++-..  ..|..+++++.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~   67 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVK   67 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHH
Confidence            58999999999999999999888899999999999999998885554322  24555542333

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=6.7e-06  Score=61.40  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~  139 (192)
                      .|+++||+||+++||..+++.....|++|+.+++++++.+.++ +.+... ..|..++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~   60 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE-AIGGAFFQVDLEDE   60 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH-HHTCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCeEEEEeCCCH
Confidence            6899999999999999999988889999999999998888777 777643 2455554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.2e-05  Score=60.07  Aligned_cols=46  Identities=20%  Similarity=0.183  Sum_probs=41.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++.+.+++
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   47 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL   47 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5899999999999999999988889999999999999888776444

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.6e-06  Score=62.20  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe-eeecCCcccHHHHHHhh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD-AFNYKEEPDLDVALKRM  149 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~i~~~  149 (192)
                      .|+++||+||+++||..+++.....|++|++++|++++++.+.+..+... +.|...+ +..+...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~~~   71 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKK-KQIDQFANE   71 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCH-HHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccc-ccccccccc
Confidence            58999999999999999999988899999999999999888874444332 3444444 444444443

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.01  E-value=5.1e-07  Score=65.29  Aligned_cols=35  Identities=11%  Similarity=-0.104  Sum_probs=28.2

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhc
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMS   49 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~   49 (192)
                      .+++..++.|.+.++|||||+.++++|+.+...+.
T Consensus        15 ~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~   49 (194)
T d1f8fa1          15 DFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRD   49 (194)
T ss_dssp             CCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHT
T ss_pred             CcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhh
Confidence            35666778888889999999999999997765443

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.4e-05  Score=54.70  Aligned_cols=36  Identities=8%  Similarity=0.081  Sum_probs=29.3

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhc
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMS   49 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~   49 (192)
                      +.+++...+.|...+++|+|++.++++||.+...+.
T Consensus        13 e~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~   48 (147)
T d1qora1          13 EVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRS   48 (147)
T ss_dssp             GGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHH
T ss_pred             ceeEEEEecCCCCCCCEEEEEEEEecccceeeeeec
Confidence            456777778888899999999999999997654443

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=1.6e-06  Score=61.15  Aligned_cols=73  Identities=11%  Similarity=0.057  Sum_probs=52.8

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .++++..++|.+....|...+|+++||++++..++.       .+|+...     +..+. ..+..++++.+ ..+.+ +
T Consensus        97 ~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~-------~iP~~~~-----~e~A~-l~~~~~~~~~~-~~~~~-~  161 (171)
T d1rjwa1          97 YCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVV-------KIPDNTI-----IEVQP-LEKINEVFDRM-LKGQI-N  161 (171)
T ss_dssp             HHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCE-------ECCTTCC-----EEEEE-GGGHHHHHHHH-HTTCC-S
T ss_pred             cccCCCccccccccccceeccCccccceEecHHHEE-------ECCCCCC-----HHHHH-HHHHHHHHHHH-HhcCC-C
Confidence            367788999999999999999999999999987666       3333211     11111 23567788877 44555 5


Q ss_pred             CCEEEEeC
Q 029543           84 GEYVYVSA   91 (192)
Q Consensus        84 g~~VlV~G   91 (192)
                      |++|||+|
T Consensus       162 G~tVlViG  169 (171)
T d1rjwa1         162 GRVVLTLE  169 (171)
T ss_dssp             SEEEEECC
T ss_pred             CCEEEEeC
Confidence            99999998

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.3e-06  Score=62.57  Aligned_cols=75  Identities=7%  Similarity=-0.091  Sum_probs=53.2

Q ss_pred             cccchhhhhhhhccccc-cCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            5 IRNTSKRLCKIQNILKQ-NAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~g~-~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      |+.|++++|.+....|. ..+|+++||++++..++..       +|+.. +    +..+. .++++++++++ +..++++
T Consensus       105 c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~-------lP~~~-~----~~~aa-~~pl~~a~~a~-~~~~~~~  170 (185)
T d1pl8a1         105 CKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYK-------LPDNV-K----PLVTH-RFPLEKALEAF-ETFKKGL  170 (185)
T ss_dssp             HHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEE-------CCTTC-G----GGEEE-EEEGGGHHHHH-HHHHTTC
T ss_pred             hccchhchhccceeeecccccccceEEEEEchHHEEE-------CCCCC-C----HHHHH-HHHHHHHHHHH-HHhCCCC
Confidence            78899999999988886 4678999999999877663       33221 0    11111 33566788888 5678899


Q ss_pred             CCEEEEeCCCch
Q 029543           84 GEYVYVSAASGA   95 (192)
Q Consensus        84 g~~VlV~Ga~G~   95 (192)
                      |++|+| | +|+
T Consensus       171 G~~VlI-g-~GP  180 (185)
T d1pl8a1         171 GLKIML-K-CDP  180 (185)
T ss_dssp             CSEEEE-E-CCT
T ss_pred             CCEEEE-E-eCC
Confidence            999998 5 554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.8e-06  Score=61.35  Aligned_cols=44  Identities=32%  Similarity=0.409  Sum_probs=40.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      .|+++||+||++|||+.+++.....|++|++++|++++++.+.+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            68999999999999999998888889999999999999888763

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.96  E-value=1.5e-05  Score=59.79  Aligned_cols=46  Identities=15%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|++++|+||+++||+.+++.....|++|+++++++++++.+.+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   49 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   49 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5899999999999999999888889999999999999888776443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.95  E-value=1.6e-05  Score=59.33  Aligned_cols=47  Identities=11%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      .|+++||+||+++||+.+++.....|++|+.++|++++++.+.++++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~   51 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG   51 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC
Confidence            58999999999999999998888889999999999999888875664

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.6e-05  Score=59.00  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|+.++|+||+++||..+++-....|++|+.++|++++++.+.++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            6999999999999999999888889999999999998888877677764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.90  E-value=1.5e-05  Score=59.81  Aligned_cols=57  Identities=16%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~  139 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++.+.++   .+...   .+|..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~   67 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSR   67 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCH
Confidence            689999999999999999988888999999999999887766533   34433   2455554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.6e-05  Score=59.62  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=40.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+++||+||+++||..+++.+...|++|+.++|++++++.+.++
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~   53 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE   53 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            489999999999999999988888999999999999988876533

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.86  E-value=1.7e-05  Score=60.29  Aligned_cols=43  Identities=9%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++.+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~   66 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA   66 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            5899999999999999999888889999999999998776554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.85  E-value=1.7e-05  Score=59.97  Aligned_cols=45  Identities=16%  Similarity=0.327  Sum_probs=40.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|++++|+||+++||+.+++.....|++|++++|++++++.+.++
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   47 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQ   47 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            489999999999999999988888999999999999988776533

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.84  E-value=1.7e-05  Score=59.83  Aligned_cols=45  Identities=16%  Similarity=0.272  Sum_probs=40.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|++++|+||+++||..+++.....|++|+.++|++++++.+.++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~   48 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI   48 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            489999999999999999988888999999999999988877643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.83  E-value=2.2e-05  Score=58.80  Aligned_cols=46  Identities=13%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|+++||+||+++||..+++.....|++|++++|++++++.+.+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5899999999999999999888889999999999999887765443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=1.7e-05  Score=59.33  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=39.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      .|++++|+||+++||..+++.....|++|+.++|++++++.+.+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   53 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD   53 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            58999999999999999998888899999999999988777653

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=4.1e-06  Score=59.22  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKK   83 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~   83 (192)
                      .++.|..++|.+....|+..+|+++||++++..++.       .+|+..+....    ....+++.|+++.+ +...+ +
T Consensus       102 ~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~-------~iPd~l~~~~a----~~~~~~~~t~~~~~-~~g~~-~  168 (175)
T d1llua1         102 HCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVG-------ILPKNVKATIH----PGKLDDINQILDQM-RAGQI-E  168 (175)
T ss_dssp             HHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSE-------ECCTTCCCCEE----EECGGGHHHHHHHH-HTTCC-S
T ss_pred             cccCCcccccccccccccccccccceEEEechHHEE-------ECCCCCChhHH----HHHHhHHHHHHHHH-HhCCC-C
Confidence            477889999999999999999999999999987666       33332111111    11156888999888 54444 6


Q ss_pred             CCEEEEe
Q 029543           84 GEYVYVS   90 (192)
Q Consensus        84 g~~VlV~   90 (192)
                      |++|||.
T Consensus       169 G~~VLVl  175 (175)
T d1llua1         169 GRIVLEM  175 (175)
T ss_dssp             SEEEEEC
T ss_pred             CCEEEeC
Confidence            9999984

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.82  E-value=2.3e-05  Score=54.02  Aligned_cols=30  Identities=13%  Similarity=0.076  Sum_probs=24.5

Q ss_pred             ccccccCCCCCCCeEEEEEEEeeeChhhhh
Q 029543           17 NILKQNAAEGSKDTVLLKNLYLSCDPYMQK   46 (192)
Q Consensus        17 ~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~   46 (192)
                      .+...+.|...+++||||+.++++||.+..
T Consensus        19 ~i~~v~~P~~~~~eVlVkV~a~gin~~D~~   48 (152)
T d1xa0a1          19 GVQTISMDDLPEGDVLVRVHYSSVNYKDGL   48 (152)
T ss_dssp             EEEEEEGGGSCSCSEEEEEEEEECCHHHHH
T ss_pred             EEEEccCCCCCCCEEEEEEEEeCCChHHHH
Confidence            345667788888999999999999997743

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=2.1e-05  Score=58.93  Aligned_cols=46  Identities=15%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|++++|+||+++||..+++.....|++|+.++|++++++.+.+++
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   52 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5899999999999999999888889999999999999887765443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.80  E-value=2.7e-05  Score=58.27  Aligned_cols=61  Identities=13%  Similarity=0.163  Sum_probs=45.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----hcCCCe---eeecCCcccHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN----KFGFDD---AFNYKEEPDLD  143 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~  143 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++.+.+    ++|.+.   ..|..+++++.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~   75 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVT   75 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHH
Confidence            48999999999999999999888899999999999877655432    446543   24555542343

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=2.9e-05  Score=57.93  Aligned_cols=62  Identities=21%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----hcCCCe---eeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN----KFGFDD---AFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~  144 (192)
                      .|++++|+||+++||+.+++.....|++|++++|++++++.+.+    ++|...   ..|..+++++.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~   72 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKK   72 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHH
Confidence            48999999999999999999888899999999999888765432    446543   245555423333

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=2.6e-05  Score=58.57  Aligned_cols=45  Identities=11%  Similarity=0.241  Sum_probs=40.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+.+||+||+++||..+++.....|++|++++|++++++.+.++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ   48 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            589999999999999999988888899999999999988776543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3e-05  Score=59.27  Aligned_cols=45  Identities=16%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      .|+++||+||+++||..+++.....|++|++++|++++++.+.++
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e   55 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE   55 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            699999999999999999988888899999999999887766533

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.76  E-value=3.2e-05  Score=57.90  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++++|+||+++||+.+++.....|++|+.+++++++++.+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~   45 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASK   45 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4899999999999999999988889999999999998877665

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.75  E-value=3.1e-06  Score=59.93  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             ccccchhhhhhhhccccccCCCCCCCeEEEEEEE-eeeChhhhhhhcccCCCcccccCCCC-CchhHHHHHHHHHHHhCC
Q 029543            4 SIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLY-LSCDPYMQKRMSKLDTSLFYSFCPGG-VIMPSVTAFAGLYEICSP   81 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~-~~v~p~~~~~~~~~~~~~~~~~~~g~-~~~~~~ta~~~l~~~~~~   81 (192)
                      .++.+++++|.+.+.+|...+|+++||++|+... +..-       ++.     .+..... ..+++.++++++ +..+.
T Consensus       103 ~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~-------~~~-----~~~~~a~~~~~~~~~a~~~~-~~~~~  169 (177)
T d1jvba1         103 YCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-------RRV-----KPMITKTMKLEEANEAIDNL-ENFKA  169 (177)
T ss_dssp             HHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-------SSS-----CCCCEEEEEGGGHHHHHHHH-HTTCC
T ss_pred             ccccccccccCCcceeeeccccccccEEEEEhHHeEEEC-------CCC-----ChHHHHHHHHHHHHHHHHHH-Hhhcc
Confidence            3778999999999999999999999999997533 2211       111     0011111 145889999999 66666


Q ss_pred             CCCCEEEE
Q 029543           82 KKGEYVYV   89 (192)
Q Consensus        82 ~~g~~VlV   89 (192)
                       .|++|||
T Consensus       170 -~G~~VlI  176 (177)
T d1jvba1         170 -IGRQVLI  176 (177)
T ss_dssp             -CSEEEEE
T ss_pred             -cCCceEC
Confidence             5999998

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.74  E-value=2.6e-06  Score=60.96  Aligned_cols=69  Identities=14%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             cccch-hhhhhhhcccccc--------CCCCCCCeEEEE-EEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHH
Q 029543            5 IRNTS-KRLCKIQNILKQN--------AAEGSKDTVLLK-NLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAG   74 (192)
Q Consensus         5 ~~~g~-~~~C~~~~~~g~~--------~~g~~~~~vlv~-~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~   74 (192)
                      |++|+ .++|.+.+.+|.+        .+|+|+||++++ ..++.       .+++.. +    +     .+|+++|+++
T Consensus       105 C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~-------~ip~~l-~----~-----~~pl~~A~~a  167 (184)
T d1vj0a1         105 CKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVL-------KVSEKI-T----H-----RLPLKEANKA  167 (184)
T ss_dssp             HHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEE-------EECTTC-C----E-----EEEGGGHHHH
T ss_pred             HhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEE-------ECCCCC-C----H-----HHHHHHHHHH
Confidence            56665 4679999988864        489999999985 34443       233321 1    1     2367789999


Q ss_pred             HHHHhCCCCCCEEEEeC
Q 029543           75 LYEICSPKKGEYVYVSA   91 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~G   91 (192)
                      + +++.+++|++|+|+-
T Consensus       168 ~-~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         168 L-ELMESREALKVILYP  183 (184)
T ss_dssp             H-HHHHHTSCSCEEEEC
T ss_pred             H-HHhCCCcCCEEEEee
Confidence            9 778999999999973

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.6e-05  Score=52.31  Aligned_cols=36  Identities=14%  Similarity=0.078  Sum_probs=27.3

Q ss_pred             hhhccc-cccCCCCCCCeEEEEEEEeeeChhhhhhhc
Q 029543           14 KIQNIL-KQNAAEGSKDTVLLKNLYLSCDPYMQKRMS   49 (192)
Q Consensus        14 ~~~~~~-g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~   49 (192)
                      +++++. ..+.|.+.+++||||+.++++||.+.....
T Consensus        15 ~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~   51 (150)
T d1yb5a1          15 EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRS   51 (150)
T ss_dssp             GGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHH
T ss_pred             ceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhc
Confidence            345543 367788889999999999999997765443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.72  E-value=2.8e-05  Score=57.94  Aligned_cols=64  Identities=14%  Similarity=0.351  Sum_probs=47.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~~~i  146 (192)
                      +++.+||+||+++||+.+++.....|++|++++|++++++.+.++   .|...   ..|..+++++.+.+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~   78 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVI   78 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence            588999999999999999988888899999999999988776543   34432   24555542343333

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.70  E-value=5.6e-05  Score=51.76  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=32.4

Q ss_pred             hhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhccc
Q 029543           14 KIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL   51 (192)
Q Consensus        14 ~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~   51 (192)
                      +++++...++|....++||||+.++++||++|.++...
T Consensus        20 ~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~   57 (147)
T d1v3va1          20 SDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL   57 (147)
T ss_dssp             GGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS
T ss_pred             cceEEEEEECCCCCCCEEEEEEEEEeEccccccccccc
Confidence            45777778889999999999999999999998777543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.69  E-value=4.7e-05  Score=56.83  Aligned_cols=61  Identities=16%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCcccHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEEPDLDV  144 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~~  144 (192)
                      |+.+||+||+++||+.+++.....|++|++++|++++++.+.++   .|...   ..|..+++++.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~   68 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEA   68 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHH
Confidence            67789999999999999988888899999999999887776533   34432   245555423433

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=4.6e-05  Score=56.10  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=36.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  122 (192)
                      .|+++||+||+++||..+++.....|++|+.++|++++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~   42 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK   42 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            5899999999999999999988889999999999976544

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.65  E-value=0.00023  Score=52.74  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK  118 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~  118 (192)
                      .++|+.++||+||+|+||+.+++.....|+ +|+.+.|+.
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            478899999999999999999987777899 688888874

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.60  E-value=0.00014  Score=54.26  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC-CHHHHHHHHH---hcCCCe
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG-SKEKVDLLKN---KFGFDD  132 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~-~~~~~~~~~~---~~g~~~  132 (192)
                      .-.|+++||+||+++||..+++.....|++|+.+.+ ++++.+.+.+   +.|.+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCc
Confidence            346999999999999999999999899999988654 4454454432   456553

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.60  E-value=0.00015  Score=53.68  Aligned_cols=62  Identities=8%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHhcCCCe---eeecCCcccHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK-VDLLKNKFGFDD---AFNYKEEPDLDV  144 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~-~~~~~~~~g~~~---vi~~~~~~~~~~  144 (192)
                      .|++++|+||+++||..+++.....|++|+++++++++ .+...+++|...   ..|..+++++.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~   69 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEA   69 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHH
Confidence            58999999999999999999888899999999987533 333332677543   245555423433

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.59  E-value=0.0001  Score=55.11  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHH---hcCCCe---eeecCCc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE-KVDLLKN---KFGFDD---AFNYKEE  139 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~~---~~g~~~---vi~~~~~  139 (192)
                      .|++++|+||+++||..+++.....|++|++++|+.+ +.+.+.+   +.|.+.   ..|..++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~   69 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE   69 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            5899999999999999999888888999999998743 4444332   455432   2355554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.57  E-value=0.00014  Score=54.50  Aligned_cols=64  Identities=22%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHHH---hcCCCee---eecCCcccHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLKN---KFGFDDA---FNYKEEPDLDVAL  146 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~~---~~g~~~v---i~~~~~~~~~~~i  146 (192)
                      .|+++||+||+++||..+++.....|++|++++++ +++++.+.+   +.|.+..   .|..+++++.+.+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~   87 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMF   87 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHH
Confidence            58999999999999999999888899999999876 444444331   4555432   3444442444333

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.56  E-value=7.2e-05  Score=52.83  Aligned_cols=47  Identities=19%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCe
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDD  132 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  132 (192)
                      .-+|+|+| +|-+|+.+++.|+.+|++|.+.|.++++++.++ +++...
T Consensus        29 pa~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~-~l~~~~   75 (183)
T d1l7da1          29 PARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKF   75 (183)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEE
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH-Hhhcce
Confidence            35799999 899999999999999999999999999999999 887644

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.56  E-value=9.1e-05  Score=54.91  Aligned_cols=44  Identities=25%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .++|||+||++|||..+++.....|+  +|+.+.|++++++.++ +.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~-~~   48 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-SI   48 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH-TC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH-Hh
Confidence            48999999999999998877666786  7999999999999888 44

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.55  E-value=9.4e-05  Score=57.13  Aligned_cols=46  Identities=30%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      -+.+|++|||+||+|-||..+++.+...|++|++++|+.++.+.++
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence            4678999999999999999999887778999999999988777665

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=0.00015  Score=50.53  Aligned_cols=55  Identities=22%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC
Q 029543           74 GLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        74 ~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      .+ +..++.++++|+|.| +||.+.+++..++..|+ +|.++.|+.+|.+.+.+.++.
T Consensus         8 ~l-~~~~~~~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~   63 (167)
T d1npya1           8 LI-EKYHLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY   63 (167)
T ss_dssp             HH-HHTTCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC
T ss_pred             HH-HHcCCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhh
Confidence            44 555677889999999 89999999999999998 899999999998888755543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.50  E-value=0.00012  Score=54.48  Aligned_cols=54  Identities=11%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe---eeecCCc
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD---AFNYKEE  139 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---vi~~~~~  139 (192)
                      .+||+||+++||+.+++.....|++|+.++|++++++.+.++   .|.+.   ..|..++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~   62 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR   62 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCH
Confidence            469999999999999987777899999999999988776533   34432   2455554

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.48  E-value=0.00013  Score=54.45  Aligned_cols=43  Identities=14%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      .|+++||+||+++||+.+++.....|++|++++++ +++++.++
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~   46 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR   46 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            68999999999999999998888889999999987 45555443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.48  E-value=5.5e-05  Score=56.46  Aligned_cols=43  Identities=16%  Similarity=0.023  Sum_probs=35.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|++|+|+||++|||..++......|++|+++.|+.++.+.+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~   46 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA   46 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH
Confidence            4899999999999999999888888999888877766554443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.00017  Score=54.60  Aligned_cols=98  Identities=9%  Similarity=-0.045  Sum_probs=64.3

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhh
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      .-+.++.++++|++||=+|  .|.|..++.+|+..|++|++++.|++..+.+++.   .|...-++.... |+.+ +. .
T Consensus        52 ~~~~~~l~l~~G~~VLDiG--CG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-d~~~-~~-~  126 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVG--CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GWEQ-FD-E  126 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CGGG-CC-C
T ss_pred             HHHHHHcCCCCCCEEEEec--CcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-hhhc-cc-c
Confidence            3344677899999999999  4568889999999999999999999988888632   232221111111 1110 00 0


Q ss_pred             ccCCc------ccccH----HHHHHHHHhhcCCCeE
Q 029543          150 FLCWV------DFVGI----EYCRSLLLVLLFRPLK  175 (192)
Q Consensus       150 ~~~g~------d~~g~----~~~~~~~~~l~~~G~v  175 (192)
                      .-+.+      +.+|.    ..++.+.+.|+|+|++
T Consensus       127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~  162 (285)
T d1kpga_         127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM  162 (285)
T ss_dssp             CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred             cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcE
Confidence            11111      56652    3778888999999953

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.2e-05  Score=54.96  Aligned_cols=47  Identities=15%  Similarity=0.008  Sum_probs=39.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .++|+|+||+|.+|..+++.+...|.+|++++|+++++.... ..++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~~~   49 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPAH   49 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc-ccccc
Confidence            578999999999999999888888999999999998865544 44443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=8.2e-05  Score=55.91  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~  151 (192)
                      ..+++++|++||=.| +|+ |.++..+|+..|  .+|+.++.+++..+.+++   ++|....+..... ++.    ....
T Consensus        97 ~~l~i~pG~~VLDiG-~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~-d~~----~~~~  169 (266)
T d1o54a_          97 MMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DIS----EGFD  169 (266)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CGG----GCCS
T ss_pred             HhhCCCCCCEEEECC-CCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec-ccc----cccc
Confidence            567999999999999 555 788889999875  599999999999988874   3454322222111 221    1111


Q ss_pred             C-Cc-----cccc-HHHHHHHHHhhcCCCeEEE
Q 029543          152 C-WV-----DFVG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~-g~-----d~~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      . .+     |.-. ...++.+.+.|||||++++
T Consensus       170 ~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~  202 (266)
T d1o54a_         170 EKDVDALFLDVPDPWNYIDKCWEALKGGGRFAT  202 (266)
T ss_dssp             CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEE
T ss_pred             ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEE
Confidence            1 22     3333 3488999999999996543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00036  Score=48.56  Aligned_cols=55  Identities=15%  Similarity=0.140  Sum_probs=43.8

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ++|.+..-..+|++|+|.| +||.+..++..+...|++|+++.|+.+|.+.+.+.+
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~   61 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLF   61 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHH
Confidence            3453433345789999999 899999999888888999999999999988876443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00012  Score=55.09  Aligned_cols=45  Identities=18%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             CCEE-EEeCCCchHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           84 GEYV-YVSAASGAVGQLVGQ-FAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        84 g~~V-lV~Ga~G~iG~~~~q-~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      |++| ||+||++|||+.+++ +++..|++|+.++|++++.+.+.+++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            6667 899999999998875 66666899999999999987765444

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00042  Score=47.91  Aligned_cols=105  Identities=12%  Similarity=0.030  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           70 TAFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        70 ta~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      +.+.++.+...+ -.|++|+|.| .|-+|.-+++.+|.+|++|++++..+-+.-.+. .-|.. +.      .+.+.+..
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~~-v~------~~~~a~~~   79 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGYE-VT------TMDEACQE   79 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHTTT
T ss_pred             hHHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCceE-ee------ehhhhhhh
Confidence            445556554443 4799999999 999999999999999999999999887655544 44442 21      22222211


Q ss_pred             hccCCc-ccccHH--HHHHHHHhhcCCCeE-EEeeCCCCCc
Q 029543          149 MFLCWV-DFVGIE--YCRSLLLVLLFRPLK-IMENDSGSTP  185 (192)
Q Consensus       149 ~~~~g~-d~~g~~--~~~~~~~~l~~~G~v-~~G~~~~~~~  185 (192)
                        .+-+ -++|+.  .-...++.||++-++ .+|....+..
T Consensus        80 --adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId  118 (163)
T d1li4a1          80 --GNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEID  118 (163)
T ss_dssp             --CSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTTSBC
T ss_pred             --ccEEEecCCCccchhHHHHHhccCCeEEEEeccccceec
Confidence              0111 455542  445667788877754 6676655543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.41  E-value=0.00095  Score=45.96  Aligned_cols=67  Identities=21%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      +...--.+.+|||+| +|.+|..+++..+..|+ +++++.|+.+|.+.+.+++|. .++++.   ++.+.+.+
T Consensus        17 ~~~~~l~~~~ilviG-aG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~~---~~~~~l~~   84 (159)
T d1gpja2          17 RELGSLHDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRFD---ELVDHLAR   84 (159)
T ss_dssp             HHHSCCTTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCGG---GHHHHHHT
T ss_pred             HHhCCcccCeEEEEC-CCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccch---hHHHHhcc
Confidence            443334688999999 69999999998888999 799999999888766658885 344433   56655544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.40  E-value=6.1e-05  Score=56.12  Aligned_cols=93  Identities=6%  Similarity=0.082  Sum_probs=61.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---C-CCeeeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNKF---G-FDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~---g-~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      ...+++||++||=.| +|+ |.++..+|++.|  .+|++++.+++..+.+++.+   + .+.+ +.... |+.+    ..
T Consensus        79 ~~l~i~pG~rVLEiG-~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv-~~~~~-Di~~----~~  150 (250)
T d1yb2a1          79 MRCGLRPGMDILEVG-VGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRS-DIAD----FI  150 (250)
T ss_dssp             --CCCCTTCEEEEEC-CTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECS-CTTT----CC
T ss_pred             HHcCCCCcCEEEEee-eeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCce-EEEEe-eeec----cc
Confidence            567899999999999 444 778888898865  38999999999999988533   2 2222 22222 3221    11


Q ss_pred             cC-Cc-----cccc-HHHHHHHHHhhcCCCeEEE
Q 029543          151 LC-WV-----DFVG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~-g~-----d~~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+ .+     |... ...+..+.+.|+|||++++
T Consensus       151 ~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         151 SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEE
T ss_pred             ccceeeeeeecCCchHHHHHHHHHhcCCCceEEE
Confidence            12 23     4333 3588889999999996544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00014  Score=54.05  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCchHHHHHHH-HHHH--cCCEEEEEeCCHHHHHHHHHhc
Q 029543           83 KGEYVYVSAASGAVGQLVGQ-FAKL--AGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q-~a~~--~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      .|+.++|+||++|||..+++ +|+.  .|++|+.++|++++++.+.+++
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l   53 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence            58889999999999997775 6663  6899999999999988876443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.00013  Score=52.85  Aligned_cols=103  Identities=19%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCCeeeecCCccc
Q 029543           67 PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPD  141 (192)
Q Consensus        67 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~  141 (192)
                      |...|. .+ +...+++|++||-.| +|+ |..++.+|+..|  .+|++++.+++..+.+++.   .+.+.+.-...  +
T Consensus        61 P~~~a~-~l-~~l~l~~g~~VLdiG-~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~--d  134 (213)
T d1dl5a1          61 PSLMAL-FM-EWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG--D  134 (213)
T ss_dssp             HHHHHH-HH-HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--C
T ss_pred             chhhHH-HH-HhhhccccceEEEec-Ccc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC--c
Confidence            434433 45 677899999999999 555 888889999876  3899999999988888743   34443321111  1


Q ss_pred             HHHHHHhhccCCccc-----ccHHHHHHHHHhhcCCCeEEE
Q 029543          142 LDVALKRMFLCWVDF-----VGIEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       142 ~~~~i~~~~~~g~d~-----~g~~~~~~~~~~l~~~G~v~~  177 (192)
                      ..+....  .+.+|.     +-....+..++.|+|||++++
T Consensus       135 ~~~~~~~--~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         135 GYYGVPE--FSPYDVIFVTVGVDEVPETWFTQLKEGGRVIV  173 (213)
T ss_dssp             GGGCCGG--GCCEEEEEECSBBSCCCHHHHHHEEEEEEEEE
T ss_pred             hHHcccc--ccchhhhhhhccHHHhHHHHHHhcCCCcEEEE
Confidence            1100000  011231     112344667899999996544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.37  E-value=0.00079  Score=51.01  Aligned_cols=95  Identities=8%  Similarity=-0.041  Sum_probs=63.0

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhh
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      .-+.+.+++++|++||=+| + |.|.++..+|+..|++|+.++.|++..+.+++   +.|....+..... +..     .
T Consensus        51 ~~~~~~l~l~~G~~VLDiG-C-G~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~-d~~-----~  122 (291)
T d1kpia_          51 KLALDKLNLEPGMTLLDIG-C-GWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWE-----E  122 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEET-C-TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC-CGG-----G
T ss_pred             HHHHHhcCCCCCCEEEEec-C-cchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhh-ccc-----c
Confidence            3344678999999999999 3 45667888999999999999999998777653   3455432221111 110     1


Q ss_pred             ccCCc---------ccccH-----------HHHHHHHHhhcCCCeE
Q 029543          150 FLCWV---------DFVGI-----------EYCRSLLLVLLFRPLK  175 (192)
Q Consensus       150 ~~~g~---------d~~g~-----------~~~~~~~~~l~~~G~v  175 (192)
                      ..+.+         +.++.           ..++.+.+.|+|+|++
T Consensus       123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~  168 (291)
T d1kpia_         123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRM  168 (291)
T ss_dssp             CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEE
T ss_pred             cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCce
Confidence            11111         44442           4788899999999954

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=0.0002  Score=53.08  Aligned_cols=43  Identities=19%  Similarity=0.146  Sum_probs=36.1

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .|+++||+||+|  |||..+++.....|++|+.++++++..+.++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~   51 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAE   51 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHH
Confidence            589999999887  8999999888888999999999876555443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.00071  Score=51.48  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+++||+||++|||..+++.....|++|++.+++
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~   40 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLG   40 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            58999999999999999999888899999998654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.28  E-value=0.00049  Score=51.00  Aligned_cols=51  Identities=12%  Similarity=0.197  Sum_probs=39.9

Q ss_pred             CCCCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCCC
Q 029543           81 PKKGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKEKV-DLLKNKFGFD  131 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~~~-~~~~~~~g~~  131 (192)
                      +-.|+++||+||+|  |||..+++-+...|++|+.++++.+++ +.+.++++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~   56 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAK   56 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCc
Confidence            44799999999654  699999888888999999999987765 4455456643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.28  E-value=0.00012  Score=53.17  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHH
Q 029543           67 PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLD  143 (192)
Q Consensus        67 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~  143 (192)
                      |...| ..+ +..++++|++||.+|  +|.|..++-+++..|.+|+++++.++-.+.+++   ++|.+.+.-...  |..
T Consensus        64 P~~~a-~ml-~~L~l~~g~~VLeIG--sGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g--d~~  137 (215)
T d1jg1a_          64 PHMVA-IML-EIANLKPGMNILEVG--TGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILG--DGS  137 (215)
T ss_dssp             HHHHH-HHH-HHHTCCTTCCEEEEC--CTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--CGG
T ss_pred             hhhHH-HHH-HhhccCccceEEEec--CCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC--ccc
Confidence            43333 445 677899999999999  456888889998889889999999876666653   567765432221  111


Q ss_pred             HHHHhhccCCccc-----ccHHHHHHHHHhhcCCCeE
Q 029543          144 VALKRMFLCWVDF-----VGIEYCRSLLLVLLFRPLK  175 (192)
Q Consensus       144 ~~i~~~~~~g~d~-----~g~~~~~~~~~~l~~~G~v  175 (192)
                      +...+.  +.+|.     .-...-+..++.|++||++
T Consensus       138 ~g~~~~--~pfD~Iiv~~a~~~ip~~l~~qL~~gGrL  172 (215)
T d1jg1a_         138 KGFPPK--APYDVIIVTAGAPKIPEPLIEQLKIGGKL  172 (215)
T ss_dssp             GCCGGG--CCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             cCCccc--CcceeEEeecccccCCHHHHHhcCCCCEE
Confidence            000000  11232     1123445678999999954

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.00013  Score=53.62  Aligned_cols=37  Identities=19%  Similarity=0.140  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +|++|||+||+++||..+++.....|++|+.+++++.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4899999999999999999999999999999987643

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.28  E-value=0.00011  Score=54.67  Aligned_cols=40  Identities=20%  Similarity=0.018  Sum_probs=36.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++||+||+++||+.+++-....|++|++.+++.++++.++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~   41 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE   41 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            7899999999999999888888999999999988888776

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.28  E-value=0.00056  Score=45.43  Aligned_cols=45  Identities=16%  Similarity=0.160  Sum_probs=40.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|+|.| .|.+|..+++.....|..|++++.++++.+.++++++..
T Consensus         2 ~IvI~G-~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~   46 (132)
T d1lssa_           2 YIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL   46 (132)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh
Confidence            689999 799999999999999999999999999999988566654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.26  E-value=0.0014  Score=49.35  Aligned_cols=98  Identities=9%  Similarity=0.037  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHh
Q 029543           72 FAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        72 ~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      +.-+.+..++++|++||=+| +| .|.++..+++..|++|++++.|++..+.+++.   .|....+..... +..    +
T Consensus        41 ~~~~~~~l~l~~g~~VLDiG-CG-~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~-d~~----~  113 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIG-CG-WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GWE----D  113 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEES-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CGG----G
T ss_pred             HHHHHHHcCCCCCCEEEEec-CC-chHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhh-hhh----h
Confidence            33444667899999999999 44 34567778888899999999999998887743   344322211111 111    1


Q ss_pred             hcc--CCc------ccccH----HHHHHHHHhhcCCCeEE
Q 029543          149 MFL--CWV------DFVGI----EYCRSLLLVLLFRPLKI  176 (192)
Q Consensus       149 ~~~--~g~------d~~g~----~~~~~~~~~l~~~G~v~  176 (192)
                      ...  +.+      +.++.    ..++...+.|+|+|+++
T Consensus       114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~  153 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT  153 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEE
Confidence            111  111      45552    36788899999999643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=0.00024  Score=53.02  Aligned_cols=37  Identities=11%  Similarity=0.062  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|+++||+||+|  |||..+++.....|++|+.++|+++
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            599999999877  7999999988899999999999864

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.24  E-value=0.00025  Score=50.74  Aligned_cols=31  Identities=6%  Similarity=-0.144  Sum_probs=25.5

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhh
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQK   46 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~   46 (192)
                      +++..++.|.+.+++||||+.++++++.+..
T Consensus        21 l~i~ev~~P~p~~~eVlIkv~a~giCgsD~~   51 (199)
T d1cdoa1          21 LVIEEIEVDVPHANEIRIKIIATGVCHTDLY   51 (199)
T ss_dssp             CEEEEEEECCCCTTEEEEEEEEEECCHHHHH
T ss_pred             cEEEEEECCCCCCCEEEEEEEEEEEecchhh
Confidence            4566677888889999999999999996643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00028  Score=52.18  Aligned_cols=44  Identities=9%  Similarity=0.128  Sum_probs=36.9

Q ss_pred             CCCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           82 KKGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        82 ~~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      -.|+++||+||+|  |+|..++......|++|+.++++++..+.+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~   48 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVE   48 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            3689999999988  7899888888889999999999876555543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.22  E-value=0.00015  Score=53.67  Aligned_cols=41  Identities=10%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             CEEEEeCCCchHHHHHHHHH-H--HcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFA-K--LAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a-~--~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++|||+||++|||+.+++.. +  ..|++|++++|++++++.++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   46 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            68999999999999887544 3  35889999999998877665

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.22  E-value=0.0001  Score=54.32  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .|+++||+||+++||..+++.....|++|++++|++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            58999999999999999999888899999999987653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.19  E-value=0.00041  Score=48.36  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +|.|+|++|++|..+++.....|++|++.+|++++.+.+.+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i   44 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5788876999999999999999999999999999988776443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.0002  Score=52.25  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=33.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .+++||+||+++||..+++.....|++|+++++++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            3689999999999999998888889999999988664

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.12  E-value=0.0012  Score=45.35  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=40.3

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +++|+|.| +|-+|..+++.+...|.+|++++|+.++.+.+.++++.
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~   47 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQH   47 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccc
Confidence            67899999 79999999998888899999999999999998845543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00018  Score=52.96  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhh
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRM  149 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~  149 (192)
                      ..+....++.+|++||=+| + |.|.++..+++..|++|++++.|+.-++.+++   +.|...-++.... ++.+    .
T Consensus        23 ~~l~~~~~l~pg~~VLDiG-C-G~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~-d~~~----~   95 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLG-S-GSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-DAAG----Y   95 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEET-C-TTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CCTT----C
T ss_pred             HHHHHHcCCCCCCEEEEEc-C-CCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhh-HHhh----c
Confidence            3455778999999999998 3 44567778888889999999999988877763   3454421111111 1111    1


Q ss_pred             ccC-Ccc---------ccc--HHHHHHHHHhhcCCCeEEEe
Q 029543          150 FLC-WVD---------FVG--IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       150 ~~~-g~d---------~~g--~~~~~~~~~~l~~~G~v~~G  178 (192)
                      ..+ .+|         .+.  ...+....+.|||||++++.
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence            111 232         222  34888889999999976554

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.07  E-value=5.1e-08  Score=71.10  Aligned_cols=88  Identities=15%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             cccchhhhhhhhccc----------cccCCCCCCCeEEEEEE--EeeeChhhhhhhcccCCCcccccCCCCCchhHHHHH
Q 029543            5 IRNTSKRLCKIQNIL----------KQNAAEGSKDTVLLKNL--YLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAF   72 (192)
Q Consensus         5 ~~~g~~~~C~~~~~~----------g~~~~g~~~~~vlv~~~--~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~   72 (192)
                      |++++.|.|.+....          +...+|+|+||++|+..  ++.       .+|+..    .+.......+++.+++
T Consensus       102 C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~-------~iPd~~----~~~~~~~~~~~~~~~~  170 (201)
T d1kola1         102 CKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLL-------KLPDRD----KAMEKINIAEVVGVQV  170 (201)
T ss_dssp             HHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCE-------ECSCHH----HHHHTCCHHHHHTEEE
T ss_pred             hhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEE-------ECCCCC----ChHHHHHHHHHHHHHH
Confidence            678888888765321          12467999999999742  122       122110    0011111145667777


Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC  109 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga  109 (192)
                      +++ ...+.+.++    +| +|++|++++|+||++||
T Consensus       171 ~a~-~~~~~~~g~----~g-~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         171 ISL-DDAPRGYGE----FD-AGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             ECG-GGHHHHHHH----HH-HTCSCEEEECTTCSSCC
T ss_pred             HHH-HhCCCCCeE----Ee-eCHHHHHHHHHHHHcCC
Confidence            777 444444443    57 99999999999999986

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.01  E-value=0.00029  Score=51.55  Aligned_cols=36  Identities=28%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +.+|||+||+++||..+++.....|++|+.++++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            457999999999999999888889999999998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.01  E-value=0.00096  Score=47.78  Aligned_cols=47  Identities=28%  Similarity=0.366  Sum_probs=43.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      .|.+|+|.| .|.+|..+++++...|++|++.+.+.++.+... .+|.+
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~-~~g~~   72 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHT   72 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHH-hhccc
Confidence            689999999 999999999999999999999999999988888 77764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.00  E-value=0.00038  Score=50.79  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Q 029543           67 PSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        67 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~  127 (192)
                      |...|. .+ +...+++|++||-+| +| .|.+++.+++. +.+|++++.+++..+.+++.
T Consensus        56 p~~~a~-ml-~~L~l~~g~~VLdIG-~G-sGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~  111 (224)
T d1vbfa_          56 LNLGIF-ML-DELDLHKGQKVLEIG-TG-IGYYTALIAEI-VDKVVSVEINEKMYNYASKL  111 (224)
T ss_dssp             HHHHHH-HH-HHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHH
T ss_pred             hhhHHH-HH-HHhhhcccceEEEec-CC-CCHHHHHHHHH-hcccccccccHHHHHHHHHH
Confidence            444443 45 667899999999999 44 67777778875 67999999999998888843

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.96  E-value=0.0013  Score=45.67  Aligned_cols=47  Identities=17%  Similarity=0.096  Sum_probs=39.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  128 (192)
                      ..++++|+|.| +||.+.+++..+...+.+|+++.|+.++.+.+.+.+
T Consensus        15 ~~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~   61 (171)
T d1p77a1          15 LRPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERF   61 (171)
T ss_dssp             CCTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHH
Confidence            34788999999 899999888877765669999999999988886544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.90  E-value=0.0013  Score=45.67  Aligned_cols=43  Identities=16%  Similarity=0.218  Sum_probs=39.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +++.|+| +|.+|+.++..+...|.+|++.+|++++.+.++ +.+
T Consensus         2 k~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~   44 (184)
T d1bg6a2           2 KTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRG   44 (184)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHT
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcC
Confidence            6899999 899999999999989999999999999999988 544

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0023  Score=48.02  Aligned_cols=36  Identities=8%  Similarity=0.086  Sum_probs=26.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEE---EEeCCHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVV---GSAGSKEK  120 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi---~~~~~~~~  120 (192)
                      +.|||+||++|||..+++.....|++|+   .+.++.++
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~   41 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT   41 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhh
Confidence            3468999999999999988877888644   44554443

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.85  E-value=0.00068  Score=48.36  Aligned_cols=49  Identities=14%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCC
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGV   64 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~   64 (192)
                      +++..++.|.+.+++||||+.++++|+.+...+.+.......++.+|.+
T Consensus        19 l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE   67 (197)
T d2fzwa1          19 LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHL   67 (197)
T ss_dssp             CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCE
T ss_pred             CEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcc
Confidence            5666778899999999999999999998776555432223334444544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.84  E-value=0.00056  Score=50.29  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +.|+|+||+++||+.+++.....|++|+.+++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4589999999999999988888999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.82  E-value=0.0013  Score=43.50  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=40.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      +++|.| .|.+|..+++.+...|.+|++++.++++.+.++ +.+...+
T Consensus         2 ~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-~~~~~~~   47 (134)
T d2hmva1           2 QFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATHAV   47 (134)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-TTCSEEE
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-HhCCcce
Confidence            578889 899999999999999999999999999999998 7776543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00092  Score=51.39  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=41.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~  126 (192)
                      ..++++||++||=.| +|+ |.++..+|++.|.  +|+.++.+++..+.+++
T Consensus        92 ~~l~i~pG~rVLE~G-tGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          92 SMMDINPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEec-ccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            567899999999998 554 8999999998864  89999999999988874

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.81  E-value=0.00095  Score=49.00  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=35.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCE-------EEEEeCCHHHHHHHHHh
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCH-------VVGSAGSKEKVDLLKNK  127 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~-------Vi~~~~~~~~~~~~~~~  127 (192)
                      -|||+||++|||+.+++.....|++       |+..+|++++++.+.++
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~   51 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE   51 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence            3789999999999998877777886       99999999988877644

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.79  E-value=0.0011  Score=47.30  Aligned_cols=41  Identities=27%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~  125 (192)
                      .+|||+||+|.+|..+++.+...|.  .|+...|++++.+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~   46 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG   46 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc
Confidence            5899999999999999988887785  6788888888766543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.78  E-value=0.0043  Score=42.54  Aligned_cols=102  Identities=17%  Similarity=0.062  Sum_probs=67.9

Q ss_pred             HHHHHHHhC-CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhc
Q 029543           72 FAGLYEICS-PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        72 ~~~l~~~~~-~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~  150 (192)
                      +.++.+... +-.|++++|.| =|-+|.-+++-+|.+|++|+++...|-+.-.+. --|.. +.      .+.+.++.  
T Consensus        10 ~d~i~r~t~~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-mdGf~-v~------~~~~a~~~--   78 (163)
T d1v8ba1          10 PDGLMRATDFLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFN-VV------TLDEIVDK--   78 (163)
T ss_dssp             HHHHHHHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCE-EC------CHHHHTTT--
T ss_pred             HHHHHHHhCceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHH-hcCCc-cC------chhHcccc--
Confidence            344544444 45799999999 999999999999999999999999986655544 33442 21      23222221  


Q ss_pred             cCCc--ccccHH--HHHHHHHhhcCCCeE-EEeeCCCCCc
Q 029543          151 LCWV--DFVGIE--YCRSLLLVLLFRPLK-IMENDSGSTP  185 (192)
Q Consensus       151 ~~g~--d~~g~~--~~~~~~~~l~~~G~v-~~G~~~~~~~  185 (192)
                       ..+  -++|+.  ....-++.||.+.++ .+|....+..
T Consensus        79 -aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd~EId  117 (163)
T d1v8ba1          79 -GDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQ  117 (163)
T ss_dssp             -CSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBC
T ss_pred             -CcEEEEcCCCCccccHHHHHHhhCCeEEEeccccchhhh
Confidence             122  456643  345667888888864 7777655543

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.72  E-value=0.0016  Score=47.86  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=31.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      +.||+||+++||...++.....|++|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            57999999999999999888899999999988554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.71  E-value=0.0014  Score=48.11  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSA-GSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~-~~~~~~~~~~  125 (192)
                      .+||+||+++||+.+++.....|++|+..+ +++++++.++
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~   43 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVS   43 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            589999999999999988888999998875 5666666554

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.69  E-value=0.0075  Score=46.74  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      |.+|||+||+|-+|..+++.+...|.+|+++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence            678999999999999999888889999999984

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.69  E-value=0.00088  Score=51.34  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=34.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .|++|||+||+|-||..+++.+...|.+|++++|+..+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            47999999999999999999999999999999987654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.68  E-value=0.0013  Score=49.42  Aligned_cols=39  Identities=13%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             CCCEEEEeCCCc--hHHHHHHHHHHHcCCEEEEEeCCHHHH
Q 029543           83 KGEYVYVSAASG--AVGQLVGQFAKLAGCHVVGSAGSKEKV  121 (192)
Q Consensus        83 ~g~~VlV~Ga~G--~iG~~~~q~a~~~Ga~Vi~~~~~~~~~  121 (192)
                      .|+++||+||+|  |||..+++.+...|++|+.+++++...
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~   47 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALN   47 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhh
Confidence            589999999877  899999998888999999999876543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.003  Score=44.16  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLL  124 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~  124 (192)
                      -.+++|+|.| +|+.+.+++..+...|+ +++.+.|++++.+.+
T Consensus        16 l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~   58 (182)
T d1vi2a1          16 IKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA   58 (182)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence            3678999999 89999999888888898 899999987655543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00098  Score=41.48  Aligned_cols=36  Identities=17%  Similarity=0.107  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++|+|.| .|..|+.+++++...|++|++.+.++.
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            478999999 899999999999999999999997643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.56  E-value=0.0045  Score=43.27  Aligned_cols=95  Identities=19%  Similarity=0.122  Sum_probs=59.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccCC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLCW  153 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~g  153 (192)
                      ....+++|++||=.| + |.|.+.+.+|+. +.+|++++.+++.++.+++   ++|...-+..... +..+.....  ..
T Consensus        27 ~~l~~~~g~~VLDiG-c-GsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-da~~~~~~~--~~  100 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVG-C-GTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-DAPEALCKI--PD  100 (186)
T ss_dssp             HHHCCCTTCEEEEES-C-TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-CHHHHHTTS--CC
T ss_pred             HhcCCCCCCEEEEEE-C-CeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-chhhccccc--CC
Confidence            446889999999888 3 335566666664 5599999999998888874   3565321222222 443333221  12


Q ss_pred             cc------ccc--HHHHHHHHHhhcCCCeEEE
Q 029543          154 VD------FVG--IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~d------~~g--~~~~~~~~~~l~~~G~v~~  177 (192)
                      +|      ..+  .+.++.+.+.|+|+|++++
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_         101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCEEEEeCccccchHHHHHHHHHhCcCCEEEE
Confidence            22      112  2478888899999996544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.54  E-value=0.0035  Score=42.89  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=38.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +|.|+| +|.+|...++..+..|.+|++.+|++++.+.++ +.|.
T Consensus         2 kI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-~~~~   44 (165)
T d2f1ka2           2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQL   44 (165)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTS
T ss_pred             EEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-Hhhc
Confidence            588999 899999888888888999999999999999988 7663

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.53  E-value=0.0022  Score=47.12  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=40.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH------HHH-HHHHHhcCCCeeeecC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK------EKV-DLLKNKFGFDDAFNYK  137 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~------~~~-~~~~~~~g~~~vi~~~  137 (192)
                      +|||+||+|-+|..++..++..|.+|+++++++      +.+ +.++ ....|.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~-~~~~d~vih~a   60 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFN-EKKPNVVINCA   60 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHH-HHCCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHH-HcCCCEEEeec
Confidence            599999999999999999999999999999864      222 3344 66788888754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.0044  Score=44.63  Aligned_cols=89  Identities=22%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCccc----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDF----  156 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~d~----  156 (192)
                      +.++.+||=.| +| .|.++..+++ .|++|++++.|++-++.++ +.+.+..+....+ ++.     ...+.+|+    
T Consensus        40 ~~~~~~vLDiG-cG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~~~-~l~-----~~~~~fD~ii~~  109 (246)
T d2avna1          40 LKNPCRVLDLG-GG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVAR-EKGVKNVVEAKAE-DLP-----FPSGAFEAVLAL  109 (246)
T ss_dssp             CCSCCEEEEET-CT-TCHHHHHHHT-TTCEEEEEESCHHHHHHHH-HHTCSCEEECCTT-SCC-----SCTTCEEEEEEC
T ss_pred             cCCCCEEEEEC-CC-Cchhcccccc-cceEEEEeecccccccccc-ccccccccccccc-ccc-----cccccccceeee
Confidence            45788999888 55 7888888886 5899999999999999999 6666655554333 221     11112221    


Q ss_pred             ------c-c-HHHHHHHHHhhcCCCeEEEee
Q 029543          157 ------V-G-IEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       157 ------~-g-~~~~~~~~~~l~~~G~v~~G~  179 (192)
                            . . ...++...+.|+|||++++..
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence                  1 1 136778889999999765543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.46  E-value=0.028  Score=37.65  Aligned_cols=44  Identities=23%  Similarity=0.365  Sum_probs=35.9

Q ss_pred             EEEEeCCCchHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQ-FAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q-~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +|.++| +|.+|...++ +.+.-+.+|++.+|++++++.+++++|.
T Consensus         2 kI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~   46 (152)
T d1yqga2           2 NVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGV   46 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCC
T ss_pred             EEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccc
Confidence            578999 8999998776 5555446999999999999998856775

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.46  E-value=0.01  Score=43.06  Aligned_cols=49  Identities=22%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      -.|.+|+|.| .|.+|..+++++...|++|++++.+..+.+.+.+..|..
T Consensus        37 l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          37 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc
Confidence            3689999999 999999999999999999999999999888887556653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.39  E-value=0.0064  Score=42.17  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           74 GLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        74 ~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +|.+...--.|++|+|.| +|+.+.+++..+...| +|.++.|+.+|.+.+.
T Consensus         8 ~l~~~~~~~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALA   57 (177)
T ss_dssp             HHHHHHCCCCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHH
T ss_pred             HHHHhCCCcCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHH
Confidence            343333334789999999 8999998776654444 9999999999887764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.34  E-value=0.0068  Score=45.51  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                      +|||+||+|-||..+++.+...|.+|++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            699999999999999988888899999987

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=7.2e-06  Score=57.24  Aligned_cols=34  Identities=18%  Similarity=0.060  Sum_probs=27.2

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhh
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRM   48 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~   48 (192)
                      .+++...+.|...+++|||+++++++||.+....
T Consensus        17 ~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~   50 (162)
T d1tt7a1          17 SVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAG   50 (162)
T ss_dssp             CCEEEEEESSSSCSSSEEEEECCEEECHHHHHHT
T ss_pred             EEEEEEcCCCCCCCCEEEEEEEEecccchhhhee
Confidence            3556667788888999999999999999775443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0052  Score=43.35  Aligned_cols=40  Identities=25%  Similarity=0.241  Sum_probs=35.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++|.|.| +|.+|...++++...|.+|+..+++++.++.++
T Consensus         5 kkvaViG-aG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIG-GGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECChHHHHHHH
Confidence            5799999 799999999999999999999999998766554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.29  E-value=0.002  Score=49.36  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .-++|+|+||+|.+|..++..+...|.+|++++|++++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            45789999999999999998888889999999997654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.24  E-value=0.0031  Score=47.41  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=30.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++|||+||+|-||..++..+...|++|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5799999999999999988777899999999764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.033  Score=43.70  Aligned_cols=52  Identities=27%  Similarity=0.275  Sum_probs=44.1

Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Q 029543           71 AFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLK  125 (192)
Q Consensus        71 a~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  125 (192)
                      ..+.+ +..++++|++++=.|  .|+|..+.++|+..|+ +|++++.++...+.++
T Consensus       205 i~~Il-~~l~Lkpgd~fLDLG--CG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak  257 (406)
T d1u2za_         205 LSDVY-QQCQLKKGDTFMDLG--SGVGNCVVQAALECGCALSFGCEIMDDASDLTI  257 (406)
T ss_dssp             HHHHH-HHTTCCTTCEEEEES--CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHH-HHhCCCCCCEEEeCC--CCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            33455 778999999988888  6789999999999987 8999999998777776

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.012  Score=43.35  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccCCcccc
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLCWVDFV  157 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~g~d~~  157 (192)
                      .++|++||=.| +|+ |.+++.+++ .|++|++++.+++-++.+++   ..|....+-.  . ++.+...   .+.+|.+
T Consensus       118 ~~~g~~VLDiG-cGs-G~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~--~-d~~~~~~---~~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLG-TGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE--G-SLEAALP---FGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE--S-CHHHHGG---GCCEEEE
T ss_pred             cCccCEEEEcc-cch-hHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEe--c-ccccccc---ccccchh
Confidence            57899999999 554 667766555 68999999999998888873   2344332211  1 3333221   1123321


Q ss_pred             -----cH---HHHHHHHHhhcCCCeEEE-ee
Q 029543          158 -----GI---EYCRSLLLVLLFRPLKIM-EN  179 (192)
Q Consensus       158 -----g~---~~~~~~~~~l~~~G~v~~-G~  179 (192)
                           ..   +.+....+.|+|||++++ |.
T Consensus       189 ~ani~~~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         189 VANLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence                 12   255667789999996544 54

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.0055  Score=45.50  Aligned_cols=94  Identities=14%  Similarity=0.060  Sum_probs=62.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhc---C---CCeeeecCCcccHHHHHHh
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNKF---G---FDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~---g---~~~vi~~~~~~~~~~~i~~  148 (192)
                      ...+++||++||=.| + |.|.++..+|++.|-  +|+.++.+++.++.+++.+   +   .+.+-... . |..+   .
T Consensus        90 ~~l~i~PG~~VLE~G-~-GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~-~-d~~~---~  162 (264)
T d1i9ga_          90 HEGDIFPGARVLEAG-A-GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV-S-DLAD---S  162 (264)
T ss_dssp             HHTTCCTTCEEEEEC-C-TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC-S-CGGG---C
T ss_pred             HHhCCCCCCEEEecC-c-CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe-c-cccc---c
Confidence            567899999999998 3 458899999998763  9999999999999987422   1   22221111 1 2111   0


Q ss_pred             hccC-Cccc-----cc-HHHHHHHHHhhcCCCeEEE
Q 029543          149 MFLC-WVDF-----VG-IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       149 ~~~~-g~d~-----~g-~~~~~~~~~~l~~~G~v~~  177 (192)
                      ...+ .+|+     -. ...+..+.+.|||+|++++
T Consensus       163 ~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         163 ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEE
T ss_pred             cccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEE
Confidence            1112 2333     22 3588899999999996543

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0011  Score=46.44  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             ccccchhhhhhhhcccc--------ccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHH
Q 029543            4 SIRNTSKRLCKIQNILK--------QNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGL   75 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g--------~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l   75 (192)
                      .|+.|++|+|++....+        ....|+|+||++++..++.       .++.......  .     ..++.++++++
T Consensus        96 ~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~-------~ip~~~~~~~--~-----a~~l~~a~~a~  161 (179)
T d1uufa1          96 ECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVL-------RIRVADIEMI--R-----ADQINEAYERM  161 (179)
T ss_dssp             HHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCE-------ECCCCCEEEE--C-----GGGHHHHHHHH
T ss_pred             cccCcccccCCCccccccccCCCCCcccccccceEEEechHHEE-------ECCCCCcChh--H-----hchhHHHHHHH
Confidence            37889999999865332        2346899999999986554       2221101111  1     44788999999


Q ss_pred             HHHhCCC
Q 029543           76 YEICSPK   82 (192)
Q Consensus        76 ~~~~~~~   82 (192)
                       .++.++
T Consensus       162 -~~a~v~  167 (179)
T d1uufa1         162 -LRGDVK  167 (179)
T ss_dssp             -HTTCSS
T ss_pred             -HHhCcc
Confidence             455554

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0037  Score=45.22  Aligned_cols=94  Identities=6%  Similarity=-0.197  Sum_probs=57.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-CeeeecCCcccHHHHHHhhccCCc-----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF-DDAFNYKEEPDLDVALKRMFLCWV-----  154 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~i~~~~~~g~-----  154 (192)
                      ..+|++||-+|  .|.|..+..+++..+.+|++++.+++-++.+++.... ...+..... +..........+.+     
T Consensus        51 ~~~g~~VLdIG--cG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          51 SSKGGRVLEVG--FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG-LWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTTCEEEEEEC--CTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES-CHHHHGGGSCTTCEEEEEE
T ss_pred             ccCCCeEEEee--ccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccc-cccccccccccccccceee
Confidence            35799999998  4557788888887667999999999999998843321 111111111 33332222222222     


Q ss_pred             cccc-----------HHHHHHHHHhhcCCCeEEE
Q 029543          155 DFVG-----------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       155 d~~g-----------~~~~~~~~~~l~~~G~v~~  177 (192)
                      |.+-           ...+..+.+.|+|||++++
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            3221           1256778899999996543

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.99  E-value=0.00097  Score=46.51  Aligned_cols=45  Identities=11%  Similarity=-0.110  Sum_probs=32.7

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhh
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRM   48 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~   48 (192)
                      ||+.+....-   +.+++...+.|...+++||||+.++++|+.+...+
T Consensus         1 MKA~~~~~~G---~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~   45 (177)
T d1jvba1           1 MRAVRLVEIG---KPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMR   45 (177)
T ss_dssp             CEEEEECSTT---SCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHT
T ss_pred             CeEEEEEeCC---CCCEEEEeeCCCCCCCEEEEEEEEEecccceeeee
Confidence            6666554421   22566677888888999999999999999766443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.96  E-value=0.0063  Score=45.06  Aligned_cols=35  Identities=11%  Similarity=0.084  Sum_probs=30.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      -.+|||+||+|-+|..++..+...|.+|++++|++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            35699999999999999988888899999999864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.96  E-value=0.0022  Score=47.30  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=30.9

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++|||+||+|-+|..++..+...|.+|++++|+.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            5799999999999999988888899999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.93  E-value=0.0034  Score=43.66  Aligned_cols=35  Identities=9%  Similarity=0.064  Sum_probs=31.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~  119 (192)
                      +++|+|+| +|+.|+.++..++.+|+ .|+++++++.
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            67899999 89999999999999999 5989998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0064  Score=39.03  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           81 PKKG-EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        81 ~~~g-~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +.++ .+|.|.| +|-+|+|+++-|+.+|.++++.+.+++
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3444 5699999 899999999999999999999998765

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.017  Score=43.87  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      +.|||+||+|-||..++..+...|.+|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            57999999999999999888888999999864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.89  E-value=0.0057  Score=46.23  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +++||+||+|-+|..++..+...|.+|++++|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            579999999999999998888899999999974

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.006  Score=42.61  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=33.1

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ....++|+|+| +|+.|+.++..+..+|.+|++.++++
T Consensus        40 ~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccC
Confidence            34578999999 89999999999999999999999764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.86  E-value=0.019  Score=38.37  Aligned_cols=64  Identities=11%  Similarity=-0.001  Sum_probs=47.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      -++|.|+|+.|.+|...+...+..|..|.+.++++....... .-+++.++.........+.+.+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~v~~~   72 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-LANADVVIVSVPINLTLETIER   72 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH-HTTCSEEEECSCGGGHHHHHHH
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh-hhhccccccccchhhheeeeec
Confidence            357999998899999999999999999999999877666555 5577776654433234444433

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.86  E-value=0.0067  Score=44.88  Aligned_cols=40  Identities=15%  Similarity=0.157  Sum_probs=31.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS-KEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~-~~~~~~~~  125 (192)
                      .++|+||+++||..+++.....|++|+.++++ +++.+.++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            36899999999999998888899999887665 45555444

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.006  Score=43.98  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~  120 (192)
                      .+++|||+||+|-+|..+++.+...|.  +|++++|++.+
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            457899999999999999988877775  89999987643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.85  E-value=0.02  Score=38.95  Aligned_cols=44  Identities=16%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHhcCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      ++|+|+| .|-+|...+...+..|.  +|++.+++++.++.++ +.+.
T Consensus         2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-~~~~   47 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGI   47 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTS
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-Hhhc
Confidence            3699999 89999999988888885  8999999999999998 6664

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.81  E-value=0.015  Score=37.39  Aligned_cols=42  Identities=19%  Similarity=0.131  Sum_probs=36.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +..+..++++|+|.| +|.+|+=.++.++.+|.+|..+.+++.
T Consensus        15 ~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          15 EELDYEPGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHCCSCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HHHhhCCCCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence            445667899999999 899999999999999999999998753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.80  E-value=0.0046  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      |++|+|+| +|+-|+.++..++..|.+|++++++
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            57899999 8999999998888899999999865

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.79  E-value=0.011  Score=44.83  Aligned_cols=33  Identities=15%  Similarity=0.137  Sum_probs=30.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      -+++||+||+|-+|..++..+...|.+|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            468999999999999999988889999999985

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.019  Score=43.49  Aligned_cols=31  Identities=23%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      +|||+||+|-+|..++..+...|.+|+++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            5999999999999999888888999999875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.76  E-value=0.029  Score=40.49  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=64.2

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhc-----
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMF-----  150 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~-----  150 (192)
                      ...-++||-+|  ..+|..++.+|+++  +.+|+.++.++++.+.+++   +.|.+.-|..... +..+.+.++.     
T Consensus        57 ~~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g-~a~~~L~~l~~~~~~  133 (227)
T d1susa1          57 LINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLDEMIKDEKN  133 (227)
T ss_dssp             HHTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHCGGG
T ss_pred             hcCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh-HHHHHHHHHHhcccc
Confidence            34567899999  56788888888876  4599999999998888773   3466554443333 4444444431     


Q ss_pred             cCCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          151 LCWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 ~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                      .+.+     |+--   ...++.+++.|++||++++-
T Consensus       134 ~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         134 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            1123     4332   34889999999999976653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.75  E-value=0.0066  Score=44.00  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=30.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..++|+|+| +|+.|++++..++..|.+|+++++++
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            357899999 89999999998888899999999753

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.68  E-value=0.00083  Score=47.96  Aligned_cols=73  Identities=11%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             ccccchhhhhhhhccccccC-------------------------CCCCCCeEEEEEEEeeeChhhhhhhcccCCC-ccc
Q 029543            4 SIRNTSKRLCKIQNILKQNA-------------------------AEGSKDTVLLKNLYLSCDPYMQKRMSKLDTS-LFY   57 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~~-------------------------~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~-~~~   57 (192)
                      .|+.|++++|.+.+..+...                         .|+|+||++|+...+..       +|+..+. ...
T Consensus       102 ~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l~~-------lP~~~~~~~~~  174 (202)
T d1e3ia1         102 LCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLAR-------VDDEFDLDLLV  174 (202)
T ss_dssp             HHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEE-------CCTTSCGGGGE
T ss_pred             cccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhEEE-------CCCCCCHHHHH
Confidence            37788999999877665421                         48999999999776653       2322110 111


Q ss_pred             ccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           58 SFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        58 ~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      ++     .+++.+.++++. .  +++|++|.|+.
T Consensus       175 ~~-----~~~~~~~~~a~~-~--~k~G~~V~vi~  200 (202)
T d1e3ia1         175 TH-----ALPFESINDAID-L--MKEGKSIRTIL  200 (202)
T ss_dssp             EE-----EEEGGGHHHHHH-H--HHTTCCSEEEE
T ss_pred             HH-----HHHHHHHHHHHH-h--CCCCCEEEEEE
Confidence            11     456777778773 3  35799988864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0071  Score=45.85  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             EE-EEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YV-YVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~V-lV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +| ||+||+|-||..++..+...|++|++++|..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57 9999999999999988888899999999854

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.013  Score=39.36  Aligned_cols=47  Identities=4%  Similarity=0.015  Sum_probs=32.1

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhh
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRM   48 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~   48 (192)
                      |++.+.+.... -...++...+.|...+++|+|++.++++||.+....
T Consensus         1 MkA~v~~~~~~-~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~   47 (146)
T d1o89a1           1 LQALLLEQQDG-KTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAI   47 (146)
T ss_dssp             CEEEEEECC----CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHH
T ss_pred             CeEEEEEcCCC-ceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEE
Confidence            66665543222 223455667788888999999999999999775433

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.58  E-value=0.01  Score=41.57  Aligned_cols=40  Identities=10%  Similarity=0.062  Sum_probs=34.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      ++|.|.| +|.+|...++++...|.+|+..+++++.++.+.
T Consensus         5 ~~vaViG-aG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           5 KQAAVLG-AGIMGGGIAYQSASKGTPILMKDINEHGIEQGL   44 (186)
T ss_dssp             SSEEEEC-CHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhh
Confidence            5699999 799999988888888999999999988766654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.57  E-value=0.014  Score=40.18  Aligned_cols=50  Identities=24%  Similarity=0.232  Sum_probs=40.9

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      ....+.+|.+||..| + |.|..+..+|+ .|++|+++|.|++-++.++++.+
T Consensus        14 ~~l~~~~~~rvLd~G-C-G~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~   63 (201)
T d1pjza_          14 SSLNVVPGARVLVPL-C-GKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERG   63 (201)
T ss_dssp             HHHCCCTTCEEEETT-T-CCSHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHC
T ss_pred             HHcCCCCCCEEEEec-C-cCCHHHHHHHH-cCCceEeecccHHHHHHHHHHhc
Confidence            335788999999999 3 45788888887 59999999999999999985443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.53  E-value=0.022  Score=36.84  Aligned_cols=41  Identities=20%  Similarity=0.036  Sum_probs=34.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +...-..+++|+|.| +|.+|+-+++.++.+|.+|..+.+++
T Consensus        23 ~~~~~~~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             HHHTCTTCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HHhhccCCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence            334445678999999 89999999999999999999998764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.43  E-value=0.011  Score=41.87  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|.+|.|+| .|.||..++++++.+|++|++.++..+
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCeEEEec-ccccchhHHHhHhhhcccccccCcccc
Confidence            488999999 999999999999999999999997644

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0067  Score=36.36  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++|.|.| +|-.|+|.++-++.+|.++++.+.+++
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999 899999999999999999999997654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.012  Score=44.23  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      ++|||+||+|-+|..++..+...|.+|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            57999999999999999888778999999985

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.32  E-value=0.013  Score=44.76  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..+-+|||+||+|-||..++..+...|.+|+++++..
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            3577899999999999999998888999999998653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.011  Score=45.40  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +.|||+||+|-+|..++..+...|.+|++++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5789999999999999988888899999999854

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.014  Score=40.50  Aligned_cols=74  Identities=16%  Similarity=0.126  Sum_probs=48.6

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEe
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVS   90 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~   90 (192)
                      -+++..++.|.+.+++||||+.++++|+.+...+.+.......++.+|.+...-..+..  ....+++.||+|.|.
T Consensus        12 pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG--~~V~~~~vGdrV~v~   85 (179)
T d1uufa1          12 PLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVG--DQVEKYAPGDLVGVG   85 (179)
T ss_dssp             CCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEEC--TTCCSCCTTCEEEEC
T ss_pred             CCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhc--cccccCCCCCEEEEc
Confidence            36777888999999999999999999998876555443333456666766211111000  022356789999764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.28  E-value=0.038  Score=41.95  Aligned_cols=100  Identities=15%  Similarity=0.065  Sum_probs=58.9

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhcc-C-C
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFL-C-W  153 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~-~-g  153 (192)
                      .+++|++||=.+ + +.|...+.+++ .|+ +|+.++.+++.++.+++   ..|.+.-+..... |..+.+..... + .
T Consensus       142 ~~~~g~~VLDl~-~-g~G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~-d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         142 WVQPGDRVLDVF-T-YTGGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-SAFEEMEKLQKKGEK  217 (324)
T ss_dssp             GCCTTCEEEETT-C-TTTHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHTTCC
T ss_pred             hcCCCCeeeccc-C-cccchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeec-hhhhhhHHHHhccCC
Confidence            367899998776 3 34445555554 477 89999999999998874   2455322222222 44443332211 1 2


Q ss_pred             c-----ccc----c-----------HHHHHHHHHhhcCCCeEEEeeCCCC
Q 029543          154 V-----DFV----G-----------IEYCRSLLLVLLFRPLKIMENDSGS  183 (192)
Q Consensus       154 ~-----d~~----g-----------~~~~~~~~~~l~~~G~v~~G~~~~~  183 (192)
                      +     |.-    +           .+.+..++++|+|||++++...+..
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            2     211    0           1256778899999997666554443

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.26  E-value=0.14  Score=33.60  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=49.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc----cccc
Q 029543           86 YVYVSAASGAVGQLVGQFAKL-AGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV----DFVG  158 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~----d~~g  158 (192)
                      +|.|.|++|-+|+.+++.... .+.++++.....+....+. .-++|.+||.+.++.+.+.++.....++    -++|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~-~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHH-TTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhc-cccCCEEEEcccHHHHHHHHHHHHhcCCCEEEeccc
Confidence            589999999999998887665 4667666554545555555 6679999998876345555544433333    5666

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.16  E-value=0.0098  Score=42.15  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=32.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|.+|.|+| .|.||+.+++.++.+|++|++.+++..
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceeeeeee-cccccccccccccccceeeeccCCccc
Confidence            478999999 999999999999999999999998643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.09  E-value=0.016  Score=41.57  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ...++|+|+| +|+.|+.++..++.+|.+|++++.++
T Consensus        47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecc
Confidence            4678999999 89999999999999999999998765

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.09  E-value=0.041  Score=40.08  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=31.2

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      -.|.+|+|.| .|.+|..+++++...|++|++++.
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence            4799999999 999999999999999999988774

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.08  E-value=0.0056  Score=45.33  Aligned_cols=90  Identities=16%  Similarity=0.077  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCeeeecCCcccHHHHHHhhccCC-cc
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDAFNYKEEPDLDVALKRMFLCW-VD  155 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~vi~~~~~~~~~~~i~~~~~~g-~d  155 (192)
                      .+++|++||-.+  .|+|.+++.+|+.-.++|++++.+++..+.+++.   .|.+..+..-.. |..    +....+ +|
T Consensus       104 ~~~~g~~VlD~~--aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~-D~~----~~~~~~~~D  176 (260)
T d2frna1         104 VAKPDELVVDMF--AGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-DNR----DFPGENIAD  176 (260)
T ss_dssp             HCCTTCEEEETT--CTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CTT----TCCCCSCEE
T ss_pred             hcCCccEEEECc--ceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc-chH----HhccCCCCC
Confidence            467899999887  3556777777876445999999999998888742   354431111111 211    122121 22


Q ss_pred             -----cc--cHHHHHHHHHhhcCCCeEE
Q 029543          156 -----FV--GIEYCRSLLLVLLFRPLKI  176 (192)
Q Consensus       156 -----~~--g~~~~~~~~~~l~~~G~v~  176 (192)
                           .-  +.+.+..+++.+++||.+.
T Consensus       177 ~Ii~~~p~~~~~~l~~a~~~l~~gG~lh  204 (260)
T d2frna1         177 RILMGYVVRTHEFIPKALSIAKDGAIIH  204 (260)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEE
T ss_pred             EEEECCCCchHHHHHHHHhhcCCCCEEE
Confidence                 21  2347888999999999653

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.05  E-value=0.02  Score=39.15  Aligned_cols=85  Identities=14%  Similarity=0.015  Sum_probs=52.5

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhccc-CCCcccccCCCCCchhHHHHHHHHHHHh
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKL-DTSLFYSFCPGGVIMPSVTAFAGLYEIC   79 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~-~~~~~~~~~~g~~~~~~~ta~~~l~~~~   79 (192)
                      |++.+.+...   +.+++..++.|...+++||||+.++++|+.+...+... ......++.+|.+...-..+..  ....
T Consensus         1 MkA~v~~~~g---~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG--~~v~   75 (171)
T d1rjwa1           1 MKAAVVEQFK---EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVG--PGVT   75 (171)
T ss_dssp             CEEEEBSSTT---SCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEEC--TTCC
T ss_pred             CeEEEEecCC---CCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEec--cccc
Confidence            7887666532   23667778889999999999999999999776544322 1223345556655211111100  0234


Q ss_pred             CCCCCCEEEEe
Q 029543           80 SPKKGEYVYVS   90 (192)
Q Consensus        80 ~~~~g~~VlV~   90 (192)
                      .++.||+|++.
T Consensus        76 ~~~vGdrV~~~   86 (171)
T d1rjwa1          76 HLKVGDRVGIP   86 (171)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CceeeeEEeec
Confidence            56789998864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.00  E-value=0.017  Score=40.21  Aligned_cols=36  Identities=31%  Similarity=0.453  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++|.|+| .|.||...+++++.+|++|++.++++.
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEec-cccccccceeeeecccccccccccccc
Confidence            588999999 999999999999999999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.97  E-value=0.039  Score=34.15  Aligned_cols=51  Identities=14%  Similarity=0.091  Sum_probs=40.6

Q ss_pred             CCCCCEEEEeCCCchHHHHH-HHHHHHcCCEEEEEeCCH-HHHHHHHHhcCCCee
Q 029543           81 PKKGEYVYVSAASGAVGQLV-GQFAKLAGCHVVGSAGSK-EKVDLLKNKFGFDDA  133 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~-~q~a~~~Ga~Vi~~~~~~-~~~~~~~~~~g~~~v  133 (192)
                      +...+++.++| -|++|..+ +++++..|+.|...|... ...+.++ +.|+...
T Consensus         5 ~~~~~~ihfiG-igG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~-~~Gi~v~   57 (96)
T d1p3da1           5 MRRVQQIHFIG-IGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA-QAGAKIY   57 (96)
T ss_dssp             CTTCCEEEEET-TTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH-HTTCEEE
T ss_pred             chhCCEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH-HCCCeEE
Confidence            45578899999 89999766 799999999999999874 4456666 7788543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.027  Score=40.29  Aligned_cols=60  Identities=18%  Similarity=0.123  Sum_probs=45.3

Q ss_pred             chhHHHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           65 IMPSVTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +.+.++.+.  .+...+.++.+||..| +|. |..+..+|+ .|++|+++|.|++-++.++++.+
T Consensus        29 ~~~~l~~~~--~~~l~~~~~~rvLd~G-CG~-G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          29 GHQLLKKHL--DTFLKGKSGLRVFFPL-CGK-AVEMKWFAD-RGHSVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             CCHHHHHHH--HHHHTTCCSCEEEETT-CTT-CTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTT
T ss_pred             CCHHHHHHH--HHhcCCCCCCEEEEeC-CCC-cHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhh
Confidence            345555543  2334677899999999 555 888888886 69999999999999998885544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.015  Score=44.01  Aligned_cols=32  Identities=25%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      ++|||+||+|-||..++..+...|.+|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999999999999999888888999999863

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.04  Score=39.46  Aligned_cols=98  Identities=10%  Similarity=-0.015  Sum_probs=64.3

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhc--
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMF--  150 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~--  150 (192)
                      ..+...-++||-+|  .+.|..++.+|++.  +.+|+.++.+++..+.+++   +.|....+..... +..+.+.+..  
T Consensus        54 L~~~~~~k~vLEiG--t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G-da~e~l~~~~~~  130 (219)
T d2avda1          54 LARLIQAKKALDLG--TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDELLAA  130 (219)
T ss_dssp             HHHHTTCCEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHT
T ss_pred             HHHccCCCeEEEEe--chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe-ehhhcchhhhhh
Confidence            34445668999999  56688888888876  4599999999998877763   3465544443333 4444443331  


Q ss_pred             --cCCc-----cccc---HHHHHHHHHhhcCCCeEEEe
Q 029543          151 --LCWV-----DFVG---IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       151 --~~g~-----d~~g---~~~~~~~~~~l~~~G~v~~G  178 (192)
                        .+.+     |+--   ...++.+++.|++||++++-
T Consensus       131 ~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         131 GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence              1122     3322   34788999999999977653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.87  E-value=0.03  Score=35.57  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|++|+|.| +|.+|..-++.+...|++|++++...
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            489999999 89999999999999999988887554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.82  E-value=0.038  Score=37.36  Aligned_cols=43  Identities=21%  Similarity=0.133  Sum_probs=37.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      +|.|+| .|.+|...++-....|.+|++.++++++.+.++ +.++
T Consensus         2 kIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-~~~~   44 (161)
T d1vpda2           2 KVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGA   44 (161)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTC
T ss_pred             EEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-Hhhh
Confidence            488999 999999888777778999999999999999887 6554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.76  E-value=0.036  Score=37.15  Aligned_cols=45  Identities=11%  Similarity=0.104  Sum_probs=36.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFD  131 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  131 (192)
                      +|.++| +|.+|...+.-....|.++++.+|++++.+.+++++|..
T Consensus         2 kIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~   46 (152)
T d2ahra2           2 KIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALP   46 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCC
T ss_pred             EEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccccee
Confidence            478999 999999887755556889999999999988876577753

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.27  Score=31.39  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      +.+..+|+|.|-+|.-|.+..+..+.+|-+|++-+.
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVt   38 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVT   38 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEc
Confidence            346778999999999999999999999999887773

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=94.74  E-value=0.2  Score=36.90  Aligned_cols=59  Identities=20%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeeecC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      +.....++++|+... +|.-|+.++..|+.+|.+++++..   ++.|.+.++ .+|++.++...
T Consensus        53 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v~~v~~  114 (292)
T d2bhsa1          53 KRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMR-AYGAELILVTK  114 (292)
T ss_dssp             HTTSCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHH-HTTCEEEEECT
T ss_pred             HhCCcCCCceeeeec-ccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHH-HhCCCcceeec
Confidence            444556667666666 999999999999999996544443   567888888 99997654433

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.73  E-value=0.017  Score=40.66  Aligned_cols=36  Identities=31%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|++|.|+| .|.||...++.++.+|++|+..++...
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eCceEEEec-cccccccceeeeeccccceeeccCccc
Confidence            589999999 999999999999999999999997643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.73  E-value=0.024  Score=36.17  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .++++|.| +|.+|.=+++.+..+|.+|..+.+.++
T Consensus        22 p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence            37899999 899999999999999999999997754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.61  E-value=0.038  Score=35.42  Aligned_cols=38  Identities=16%  Similarity=0.055  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .++..++|+|.| +|.+|.=+++..+.+|.+|..+.+++
T Consensus        18 ~l~~p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             ccCCCCEEEEEC-CchHHHHHHHHHHhccccceeeehhc
Confidence            344568999999 89999999999999999999999764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.59  E-value=0.025  Score=41.73  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ....++|+|+| +|..|+.++..++..|.+|++++.++
T Consensus        27 ~~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34457899999 89999999988888899999998653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.54  E-value=0.036  Score=35.73  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      +.++++++|.| +|.+|.=++...+.+|.+|..+.++++
T Consensus        27 ~~~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hhcCCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence            56789999999 899999999888889999999998754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.52  E-value=0.016  Score=40.78  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=28.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~  118 (192)
                      ++|||+||+|-+|..+++.+...|.  +|++..|++
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            6899999999999999988777775  788777654

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.48  E-value=0.018  Score=39.88  Aligned_cols=85  Identities=12%  Similarity=-0.000  Sum_probs=54.2

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhC
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICS   80 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~   80 (192)
                      ||+.+-++..    +.++...+.|...+++||||+.+++++..+...+.........++.+|.+...-..+...  ...+
T Consensus         1 MKa~v~~~~~----~l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~--~v~~   74 (177)
T d1jqba1           1 MKGFAMLGIN----KLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGS--EVKD   74 (177)
T ss_dssp             CEEEEEEETT----EEEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECT--TCCS
T ss_pred             CeEEEEEeCC----CeEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeeccc--ccce
Confidence            7777666643    356677788899999999999999999987644433222334456667662211110000  1135


Q ss_pred             CCCCCEEEEeC
Q 029543           81 PKKGEYVYVSA   91 (192)
Q Consensus        81 ~~~g~~VlV~G   91 (192)
                      +++||+|.+..
T Consensus        75 ~~vGdrV~v~~   85 (177)
T d1jqba1          75 FKPGDRVIVPC   85 (177)
T ss_dssp             CCTTCEEEECS
T ss_pred             ecCCCcEEEee
Confidence            78899999865

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=94.45  E-value=0.062  Score=39.39  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=30.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      -.|.+|+|.| .|.+|..+++.+...|++|++++.
T Consensus        34 l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             STTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            3689999999 999999999999999999988763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.03  Score=35.73  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      -++|+|.| +|.+|+=+++..+.+|.+|..+.+++.
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence            37899999 899999999999999999999998753

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.08  Score=37.86  Aligned_cols=45  Identities=29%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~  126 (192)
                      .+++|++||-+|  .|.|..++.+|+..|  .+|+.++++++-.+.+++
T Consensus        73 ~l~~g~~VLdiG--~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~  119 (224)
T d1i1na_          73 QLHEGAKALDVG--SGSGILTACFARMVGCTGKVIGIDHIKELVDDSVN  119 (224)
T ss_dssp             TSCTTCEEEEET--CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             ccCCCCeEEEec--CCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence            789999999999  345788888888866  389999999988887763

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.24  E-value=0.02  Score=40.39  Aligned_cols=85  Identities=11%  Similarity=0.001  Sum_probs=51.5

Q ss_pred             CccccccchhhhhhhhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhC
Q 029543            1 MDTSIRNTSKRLCKIQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICS   80 (192)
Q Consensus         1 ~~~~~~~g~~~~C~~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~   80 (192)
                      ||+.+.....   ..+++..++.|.+.+++||||+.++++|+.+...+.+.. ....|+.+|.+...-..+..  ....+
T Consensus         9 ~KAaV~~~~g---~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~-~~~~P~v~GHE~~G~V~~vG--~~V~~   82 (202)
T d1e3ia1           9 CKAAIAWKTG---SPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KALFPVVLGHECAGIVESVG--PGVTN   82 (202)
T ss_dssp             EEEEEBCSTT---SCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTS-CCCSSBCCCCEEEEEEEEEC--TTCCS
T ss_pred             EEEEEEccCC---CCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeec-ccccccccccccceEEeeec--CCcee
Confidence            4455544331   125666778888889999999999999998876655442 23345666665211000000  01235


Q ss_pred             CCCCCEEEEeC
Q 029543           81 PKKGEYVYVSA   91 (192)
Q Consensus        81 ~~~g~~VlV~G   91 (192)
                      ++.||+|.+..
T Consensus        83 ~~~GdrV~~~~   93 (202)
T d1e3ia1          83 FKPGDKVIPFF   93 (202)
T ss_dssp             CCTTCEEEECS
T ss_pred             ccCCCEEEEEe
Confidence            67899998765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.21  E-value=0.021  Score=42.03  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|+|.| +|+.|++++..++..|.+|++++++++
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            499999 899999999999999999999998754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.16  E-value=0.046  Score=37.98  Aligned_cols=37  Identities=32%  Similarity=0.257  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      .|.++.|.| .|.+|...++.++.+|.+|++.++..++
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             cceeeeecc-ccchhHHHHHHhhhccceEEeecCCCCh
Confidence            578999999 9999999999999999999999987543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.037  Score=35.72  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++++|+| +|.+|.=++++...+|.+|..+.+++
T Consensus        24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEEC-CCchHHHHHHHHHhhCcceeEEEecc
Confidence            7899999 89999999999999999999999764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.10  E-value=0.048  Score=38.75  Aligned_cols=35  Identities=23%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      ..-++|+|+| +|..|++++..++..|.+|.++++.
T Consensus         4 ~~~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLG-SGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3456899999 8999999998888899999999964

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.09  E-value=0.052  Score=35.51  Aligned_cols=39  Identities=21%  Similarity=0.102  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+..+++|+|.| +|.+|.=++..++.+|.+|..+.+++.
T Consensus        31 ~~~~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          31 QLIADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             hhccCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence            456789999999 899999999999999999999997653

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.05  E-value=0.029  Score=38.48  Aligned_cols=73  Identities=16%  Similarity=0.023  Sum_probs=46.1

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCC-CcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEe
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDT-SLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVS   90 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~-~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~   90 (192)
                      +++...+.|...+++||||+.++++|+.+...+.+... ....++.+|.+...-..+...  ...+++.||+|.+.
T Consensus        18 l~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~--~v~~~~~GdrV~~~   91 (175)
T d1llua1          18 LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGS--GVTRVKEGDRVGIP   91 (175)
T ss_dssp             CEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECT--TCCSCCTTCEEEEC
T ss_pred             CEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCC--CccccccCCEEEec
Confidence            56667788888999999999999999988766554322 233455666652111110000  12356789998765

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.036  Score=41.72  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~  125 (192)
                      +|||+||+|-||..+++.+...| .+|+++++...+...+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~   42 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL   42 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc
Confidence            59999999999999998777777 49999988765544443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.04  E-value=0.089  Score=31.99  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             EEEEeCCCchHHHHH-HHHHHHcCCEEEEEeCCH-HHHHHHHHhcCCCee
Q 029543           86 YVYVSAASGAVGQLV-GQFAKLAGCHVVGSAGSK-EKVDLLKNKFGFDDA  133 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~-~q~a~~~Ga~Vi~~~~~~-~~~~~~~~~~g~~~v  133 (192)
                      +|-++| -||+|... +++++..|+.|...|+.+ +..+.|+ +.|+...
T Consensus         3 ~ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~-~~Gi~i~   50 (89)
T d1j6ua1           3 KIHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR-KLGIPIF   50 (89)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCCEE
T ss_pred             EEEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH-HCCCeEE
Confidence            577888 89999855 689999999999999886 4566677 8898643

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.98  E-value=0.49  Score=31.43  Aligned_cols=53  Identities=13%  Similarity=0.120  Sum_probs=38.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCC--HHHHHHHHHhcCCCeeeecC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGS--KEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~--~~~~~~~~~~~g~~~vi~~~  137 (192)
                      ++|.|.|++|.||..+.++.+..  .++|++.+-.  -+++....++|.+..++-.+
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d   59 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIAD   59 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESC
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceecc
Confidence            68999999999999999999875  3577776644  33433333388888765443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.95  E-value=0.054  Score=34.67  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           70 TAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        70 ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ++..++ +...  ..++++|.| +|.+|+=+++..+.+|.+|..+.++++
T Consensus        11 ~s~~~l-~l~~--~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          11 DSTGAL-DFQN--VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             EHHHHT-SCSS--CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             chhHhh-Cccc--CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence            455555 3322  348899999 899999999999999999999997643

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.074  Score=37.87  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=59.4

Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCee--eecCCcccHHHHHHhh
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDDA--FNYKEEPDLDVALKRM  149 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~v--i~~~~~~~~~~~i~~~  149 (192)
                      +.+.+.+++|++||=.| + |.|..+..+++ .+++|+++|.|+.-++.+++.   .+.+.+  +.-+.+ ++     ..
T Consensus         8 l~~~~~~~~~~rILDiG-c-GtG~~~~~la~-~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~-~~-----~~   78 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIG-A-GAGHTALAFSP-YVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SL-----PF   78 (234)
T ss_dssp             HHHHHTCCTTCEEEEES-C-TTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BC-----CS
T ss_pred             HHHHhCCCCCCEEEEeC-C-cCcHHHHHHHH-hCCeEEEEeCChhhhhhhhhhhcccccccccccccccc-cc-----cc
Confidence            44778999999999999 3 44677777776 478999999999877777632   344322  111111 10     01


Q ss_pred             ccCCcc---------ccc--HHHHHHHHHhhcCCCeEEE
Q 029543          150 FLCWVD---------FVG--IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       150 ~~~g~d---------~~g--~~~~~~~~~~l~~~G~v~~  177 (192)
                      ..+.+|         .+.  ...++.+.+.|+|+|++++
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~  117 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL  117 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEE
Confidence            111222         122  2478899999999996544

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.86  E-value=0.027  Score=39.26  Aligned_cols=76  Identities=11%  Similarity=-0.027  Sum_probs=47.7

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHH-HH--HHhCCCCCCEEEEeC
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAG-LY--EICSPKKGEYVYVSA   91 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~-l~--~~~~~~~g~~VlV~G   91 (192)
                      +++..++.|...+++|||++.++++|+.+...+.+.......|+.+|.+...-..+... +.  +..+++.||.|.+.-
T Consensus        17 l~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~   95 (184)
T d1vj0a1          17 LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNR   95 (184)
T ss_dssp             CEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECS
T ss_pred             cEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEeccccccccccccceeeeEecc
Confidence            55566788888999999999999999988765555433334567677652111010000 00  123467899998864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.044  Score=35.44  Aligned_cols=33  Identities=6%  Similarity=0.006  Sum_probs=30.6

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ++++|.| +|.+|+=+++.++.+|.+|..+.+++
T Consensus        23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEc-CCccHHHHHHHHhcCCcEEEEEeecc
Confidence            7899999 89999999999999999999999874

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.02  Score=42.62  Aligned_cols=50  Identities=18%  Similarity=0.263  Sum_probs=36.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH-------HH-HHHHHhcCCCeeee
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE-------KV-DLLKNKFGFDDAFN  135 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~-------~~-~~~~~~~g~~~vi~  135 (192)
                      ++|||+||+|-+|..+++.+...|..+++++...+       .. +.++ ....|.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~   60 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFA-SERIDQVYL   60 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHH-HHCCSEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHh-hcCCCEEEE
Confidence            57999999999999999888888997777765432       22 2333 455666654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.80  E-value=0.11  Score=39.48  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=25.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCE-EEEEeC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCH-VVGSAG  116 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~  116 (192)
                      +|||+||+|-+|..++..+...|.+ |+++++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            5999999999999999888778884 666653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.73  E-value=0.046  Score=40.90  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                      .|.+|+|.| .|.+|..+++.+...|++|++++
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Confidence            578999999 99999999999999999999887

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.67  E-value=0.094  Score=35.31  Aligned_cols=44  Identities=18%  Similarity=0.044  Sum_probs=36.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGF  130 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~  130 (192)
                      ++|.++| .|-+|...+.-....|.+|.+.+|++++.+.++ ..+.
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-~~~~   45 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-AAGA   45 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTC
T ss_pred             CEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-hhhc
Confidence            4689999 999999777766667999999999999988887 6554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.65  E-value=0.04  Score=39.71  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=28.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~  118 (192)
                      .|+|+| +|+.|++++.+++..|. +|.+..+++
T Consensus         3 ~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAG-AGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            589999 89999999999999997 888888764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.038  Score=36.86  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      .|++|||.| +|.+|.--+..+...|++|++++.
T Consensus        12 ~gkrvLViG-gG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIG-GGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEE-ESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence            589999999 799999999999999998888853

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.55  E-value=0.05  Score=34.54  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .++++|.| +|.+|.=+++..+.+|.+|..+.+.+
T Consensus        21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence            37899999 89999999999999999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.54  E-value=0.031  Score=40.43  Aligned_cols=33  Identities=18%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|+|+| +|+.|++++..+...|.+|++++++++
T Consensus         6 DViIIG-aG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIG-AGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            489999 899999999888888999999998764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=93.52  E-value=0.11  Score=38.19  Aligned_cols=93  Identities=10%  Similarity=-0.067  Sum_probs=60.1

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe---eeecCCcccHHHHHHhhc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDD---AFNYKEEPDLDVALKRMF  150 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~---vi~~~~~~~~~~~i~~~~  150 (192)
                      ....+.+|++||=+| +| .|..+..+++..|++|++++.++..++.+++   ..|.+.   ++..+-. ++     ...
T Consensus        61 ~~~~l~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l-----~~~  132 (282)
T d2o57a1          61 MTGVLQRQAKGLDLG-AG-YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EI-----PCE  132 (282)
T ss_dssp             HTTCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SC-----SSC
T ss_pred             HhcCCCCCCEEEEeC-CC-CcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccc-cc-----ccc
Confidence            445789999999999 44 5777888888889999999999988777763   234432   2221111 11     001


Q ss_pred             cCCcc---------ccc--HHHHHHHHHhhcCCCeEEE
Q 029543          151 LCWVD---------FVG--IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       151 ~~g~d---------~~g--~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+.+|         .+.  ...+..+.++|+|+|++++
T Consensus       133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~  170 (282)
T d2o57a1         133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI  170 (282)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEE
Confidence            11122         222  2478899999999996433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.51  E-value=0.032  Score=39.96  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=28.1

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      |+|+| +|+.|++++..+...|.+|++++++++
T Consensus         5 ViIIG-aG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIG-GGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999 899999988888888999999997653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.037  Score=37.69  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=27.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|+.|+.++..+...|.+|+++++.
T Consensus         3 DViIIG-gGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVG-SGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            489999 8999999999999999999999853

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.04  Score=36.93  Aligned_cols=38  Identities=24%  Similarity=0.117  Sum_probs=31.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      +|+|+| +|.+|.+........|.+|..++|++++.+..
T Consensus         2 kI~IiG-aG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~   39 (167)
T d1ks9a2           2 KITVLG-CGALGQLWLTALCKQGHEVQGWLRVPQPYCSV   39 (167)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE
T ss_pred             EEEEEC-cCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh
Confidence            589999 79999988877777899999999988755443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.50  E-value=0.036  Score=38.89  Aligned_cols=31  Identities=16%  Similarity=0.087  Sum_probs=28.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|+.|+.++..+...|.+|++++++
T Consensus         5 DvvVIG-gGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIG-GGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCcEEEEEec
Confidence            489999 8999999999999999999999865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.47  E-value=0.058  Score=36.16  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~  118 (192)
                      .|++|+|.| +|.+|+.+++.++..+  .+|+++++++
T Consensus         1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999 8999999988887776  4788888665

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.47  E-value=0.06  Score=35.13  Aligned_cols=58  Identities=16%  Similarity=0.095  Sum_probs=40.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHh
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGS-AGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKR  148 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~  148 (192)
                      +|.|.|++|-+|+...++++..+.+++.. +.+..  +.+   -.+|.+||.+.++.+.+.++.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~--~~~---~~~DVvIDFS~p~~~~~~l~~   60 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV--EEL---DSPDVVIDFSSPEALPKTVDL   60 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE--EEC---SCCSEEEECSCGGGHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH--HHh---ccCCEEEEecCHHHHHHHHHH
Confidence            58999999999999999999999876544 43321  111   247889998876344444443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=93.43  E-value=0.054  Score=39.45  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH----------HHHHH-HHHhcCCCeeeecC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK----------EKVDL-LKNKFGFDDAFNYK  137 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~----------~~~~~-~~~~~g~~~vi~~~  137 (192)
                      +|||+||+|-+|..++......| +++.++++.          +.++. ++ +..+|.||+..
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g-~~v~~~~~~~~~~~Dl~~~~~~~~~i~-~~~~D~Vih~A   62 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVHSKEFCGDFSNPKGVAETVR-KLRPDVIVNAA   62 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS-EEEEECTTCSSSCCCTTCHHHHHHHHH-HHCCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC-CEEEEECCCccccCcCCCHHHHHHHHH-HcCCCEEEEec
Confidence            59999999999999988776656 455555442          22222 33 56778887754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.31  E-value=0.07  Score=34.54  Aligned_cols=35  Identities=11%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      ..++++|.| +|.+|+=+++..+.+|.+|..+.+++
T Consensus        25 ~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            358999999 89999999999999999999999764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.30  E-value=0.22  Score=32.08  Aligned_cols=60  Identities=15%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      +.+++..-+.+++.-..-..=.++++++|.+|. ++++...+++..+.++ ++|++.++++.
T Consensus        59 ~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~-~~G~d~vi~p~  119 (132)
T d1lssa_          59 EDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFE-RLGVDVVVSPE  119 (132)
T ss_dssp             HHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHH-HTTCSEEECHH
T ss_pred             hhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHH-HCCCCEEECHH
Confidence            556777777766643255556788899999998 8999998999899998 99999999764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.30  E-value=0.062  Score=34.60  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      ..++++|+| +|-+|+=++++.+.+|.+|.++.+++.
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            347899999 899999999999999999999998754

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.30  E-value=0.065  Score=37.25  Aligned_cols=36  Identities=17%  Similarity=0.051  Sum_probs=32.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .+.+|.|.| .|.||...++.++.+|.+|+..++...
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cccceeecc-ccccchhhhhhhhccCceEEEEeeccc
Confidence            588999999 999999999999999999999997543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.28  E-value=0.048  Score=35.16  Aligned_cols=32  Identities=19%  Similarity=0.044  Sum_probs=29.2

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      ++++|.| +|.+|+=++++.+.+|.+|..+.++
T Consensus        21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence            6799999 8999999999999999999888865

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.28  E-value=0.092  Score=37.56  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc---C----CEEEEEeCCHHHHHHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA---G----CHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~---G----a~Vi~~~~~~~~~~~~~  125 (192)
                      .+++|++||.+|.  +.|..++.+++..   |    .+|+.++++++-.+.++
T Consensus        77 ~l~~g~~VLeIGt--GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          77 HLKPGARILDVGS--GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             TCCTTCEEEEESC--TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEecC--CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            6899999999993  4466665555543   4    38999999988777765

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.27  E-value=0.089  Score=39.70  Aligned_cols=41  Identities=2%  Similarity=-0.002  Sum_probs=32.9

Q ss_pred             CCEEEEeCCC--chHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Q 029543           84 GEYVYVSAAS--GAVGQLVGQFAKLAGCHVVGSAGSKEKVDLL  124 (192)
Q Consensus        84 g~~VlV~Ga~--G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  124 (192)
                      ++..||+||+  .|||..+++.....|++|+.+.+++......
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~   44 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFM   44 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhh
Confidence            5678999943  5999999988888999999998876644443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.087  Score=38.39  Aligned_cols=29  Identities=14%  Similarity=0.243  Sum_probs=25.4

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCC-EEEEEe
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGC-HVVGSA  115 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~  115 (192)
                      |||+||+|-||..++..+...|. +|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            89999999999999987777797 688876

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=93.27  E-value=0.08  Score=37.34  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCCe--eeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN---KFGFDD--AFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~--vi~~~~~~~~~~~i~~~~~  151 (192)
                      +.++++++++||=.| +| .|.++..+++. |++|++++.|++-++.+++   +.+.+.  ++..+.+ ++     ....
T Consensus         9 ~~~~l~~~~rVLDiG-cG-~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~-~l-----~~~~   79 (231)
T d1vl5a_           9 QIAALKGNEEVLDVA-TG-GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QM-----PFTD   79 (231)
T ss_dssp             HHHTCCSCCEEEEET-CT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC-----CSCT
T ss_pred             HhcCCCCcCEEEEec-cc-CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccccccccccccc-cc-----cccc
Confidence            678999999999999 44 67777777754 7899999999987777763   245443  2222211 11     0111


Q ss_pred             CCcc---------ccc--HHHHHHHHHhhcCCCeEEE
Q 029543          152 CWVD---------FVG--IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~g~d---------~~g--~~~~~~~~~~l~~~G~v~~  177 (192)
                      +.+|         .+.  ...+..+.++|+|||++++
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i  116 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL  116 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEE
Confidence            1222         222  2478999999999996543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.18  E-value=0.071  Score=37.10  Aligned_cols=40  Identities=23%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+|.|+| +|..|.+++..+...|.+|...+|+++..+.+.
T Consensus         8 ~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~   47 (189)
T d1n1ea2           8 NKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVN   47 (189)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Confidence            4799999 899999988888777779999999999988886

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.15  E-value=5.3e-05  Score=54.47  Aligned_cols=36  Identities=3%  Similarity=0.268  Sum_probs=24.9

Q ss_pred             ccccchhhhhhhhcccccc---------------------CCCCCCCeEEEEEEEee
Q 029543            4 SIRNTSKRLCKIQNILKQN---------------------AAEGSKDTVLLKNLYLS   39 (192)
Q Consensus         4 ~~~~g~~~~C~~~~~~g~~---------------------~~g~~~~~vlv~~~~~~   39 (192)
                      .|++++.++|++....+..                     -.++|+||++|+...+.
T Consensus       102 ~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~  158 (198)
T d1p0fa1         102 ACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVA  158 (198)
T ss_dssp             HHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEE
T ss_pred             cccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEE
Confidence            3788999999876543321                     13678999999876543

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.14  E-value=0.6  Score=29.76  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG  116 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~  116 (192)
                      +.+..+|+|.|-+|.-|++..+.++.+|-+|++-+.
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVt   39 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVT   39 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeee
Confidence            345678999999999999999999999999888773

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.08  E-value=0.039  Score=38.87  Aligned_cols=32  Identities=19%  Similarity=0.160  Sum_probs=27.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~  118 (192)
                      +|+|+| +|..|+.++..++..|. +|+++.+++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            499999 89999999988888897 699998764

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.04  E-value=0.082  Score=36.90  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=32.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|.++.|+| .|.||...+++++.+|.+|+..++...
T Consensus        46 ~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cccceEEee-cccchHHHHHHHHhhcccccccccccc
Confidence            489999999 999999999999999999999987543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.00  E-value=0.059  Score=40.51  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .++|+|+| +|..|+.++..+...|.+|.++..++
T Consensus         2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            57899999 89999999988888899999999764

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.99  E-value=0.26  Score=38.06  Aligned_cols=55  Identities=18%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeeec
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +++++++|+-.. +|..|..++..|+.+|.+++++..   ++.|.+.++ .+|++.++..
T Consensus       140 ~~~~g~~VVeaS-SGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ir-a~GAeVi~~~  197 (382)
T d1wkva1         140 RVEKGSLVADAT-SSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPR-LLGAQVIVDP  197 (382)
T ss_dssp             TSCTTCEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHH-HTTCEEEEET
T ss_pred             ccCCCCEEEEeC-CcHHHHHHHHHHHHcCCCEEEEeecccccccccccc-ccCcceeecC
Confidence            466777655444 899999999999999997555543   357888888 9999876553

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.94  E-value=0.1  Score=36.42  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=34.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +|.|+| .|=+|+.++......|.+|++.|.++++.+.+.
T Consensus         2 kI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            488999 999999887777778999999999999988886

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.94  E-value=0.095  Score=35.78  Aligned_cols=40  Identities=18%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+|.++| .|.+|...+.-....|.+|++.+|++++.+.+.
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~   42 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL   42 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH
T ss_pred             CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH
Confidence            3588999 999999777766667999999999999998886

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=92.90  E-value=0.18  Score=37.93  Aligned_cols=96  Identities=20%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCCe--eeecCCcccHHHHHHhhccCCc--
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNK---FGFDD--AFNYKEEPDLDVALKRMFLCWV--  154 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~--vi~~~~~~~~~~~i~~~~~~g~--  154 (192)
                      ..|++||=.+ +|+ |..++++|+ .+++|++++.+++.++.+++.   .|.+.  ++..+.. ++.+.+.... +.+  
T Consensus       144 ~~g~rVLDl~-~gt-G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~-~~~~~~~~~~-~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVF-SYA-GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAF-DLLRRLEKEG-ERFDL  218 (318)
T ss_dssp             CCEEEEEEET-CTT-THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHH-HHHHHHHHTT-CCEEE
T ss_pred             hCCCeeeccC-CCC-cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHH-HHhhhhHhhh-cCCCE
Confidence            3689998766 333 444556654 345999999999999988742   45553  2322111 3333332211 122  


Q ss_pred             ---cc--c--c-----------HHHHHHHHHhhcCCCeEEEeeCCC
Q 029543          155 ---DF--V--G-----------IEYCRSLLLVLLFRPLKIMENDSG  182 (192)
Q Consensus       155 ---d~--~--g-----------~~~~~~~~~~l~~~G~v~~G~~~~  182 (192)
                         |.  .  +           .+.+..+++.|+|||++++...+.
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence               21  0  1           125668889999999766655443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.86  E-value=0.11  Score=34.95  Aligned_cols=41  Identities=22%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDL  123 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~  123 (192)
                      +.-.+|.|+| +|.+|..++.++...+. +++..|.++++.+-
T Consensus         5 ~k~~KI~IIG-aG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g   46 (154)
T d1pzga1           5 QRRKKVAMIG-SGMIGGTMGYLCALRELADVVLYDVVKGMPEG   46 (154)
T ss_dssp             SCCCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHH
T ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHhCCCceEEEEEeccccchh
Confidence            4567899999 59999988888888786 99999988765443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.84  E-value=0.1  Score=35.54  Aligned_cols=42  Identities=19%  Similarity=0.069  Sum_probs=36.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +|-|+| .|.+|...+.-....|.+|++.+|++++.+.+. +.+
T Consensus         3 kIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~-~~~   44 (178)
T d1pgja2           3 DVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFM-KAN   44 (178)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-HHT
T ss_pred             EEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HcC
Confidence            478999 999999888777778999999999999999887 444

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.78  E-value=0.038  Score=39.86  Aligned_cols=31  Identities=26%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      +|+|+| +|..|+.++..++..|.+|+++.++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVG-GGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence            489999 8999999998888889999999875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.72  E-value=0.054  Score=38.15  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=28.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|+.|+.++..+..+|.+|++++..+
T Consensus         7 DviVIG-~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIG-GGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            589999 89999999888888999999998653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.68  E-value=0.21  Score=35.90  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEe
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFA-KLAGCHVVGSA  115 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~  115 (192)
                      ..|.+|+|.| .|.+|..+++.+ +..|++|++++
T Consensus        29 l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence            3689999999 999999999876 67899988877

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.61  E-value=0.063  Score=37.50  Aligned_cols=31  Identities=19%  Similarity=0.092  Sum_probs=27.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|+.|+.++..++..|.+|.++.+.
T Consensus         5 DviVIG-~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVG-AGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCEEEEEecC
Confidence            378899 8999999999999999999999865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.095  Score=39.16  Aligned_cols=44  Identities=30%  Similarity=0.216  Sum_probs=31.7

Q ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHH
Q 029543           74 GLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEK  120 (192)
Q Consensus        74 ~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~  120 (192)
                      ++.+...+.+|++||-.| +| .|.+++.+|+ .|+ +|++++.++.-
T Consensus        26 ai~~~~~~~~~~~VLDiG-cG-~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVG-CG-TGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             HHHHCGGGTTTCEEEEET-CT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             HHHhccccCCcCEEEEEC-CC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            343434566899999999 55 6666666666 487 89999998753

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.032  Score=38.50  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      +..|+|+| +|+.|+.++..+...|.+|+++++.+
T Consensus         5 ~~dVvIIG-GGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILG-SGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45799999 89999999999999999999987643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.55  E-value=0.051  Score=38.66  Aligned_cols=93  Identities=10%  Similarity=0.021  Sum_probs=57.1

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhc---cC-C
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMF---LC-W  153 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~---~~-g  153 (192)
                      .-++||-+|  .+.|..++.+|+++  +.+|+.++.+++..+.+++   +.|...-|..... +..+.+.++.   .. .
T Consensus        56 kpk~ILEiG--t~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G-d~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          56 SPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             CCSEEEEEC--CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHGGGHHHHSCCCC
T ss_pred             CCCEEEEEc--cCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec-cccccccchhhcccccc
Confidence            347899998  45577778888875  5699999999988887762   4465443333333 4444443322   11 2


Q ss_pred             c-----ccccHH-----HHHHHHHhhcCCCeEEEe
Q 029543          154 V-----DFVGIE-----YCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       154 ~-----d~~g~~-----~~~~~~~~l~~~G~v~~G  178 (192)
                      +     |..-..     .+..+++.|+|||++++-
T Consensus       133 ~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         133 LDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             cceeeecccccccccHHHHHHHhCccCCCcEEEEe
Confidence            2     432211     345566789999976653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.42  E-value=0.069  Score=37.82  Aligned_cols=32  Identities=25%  Similarity=0.063  Sum_probs=28.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +||.|+.++..+..+|.+|+++++.+
T Consensus         8 DviIIG-~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLG-GGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            489999 89999999999999999999998654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.40  E-value=0.096  Score=33.51  Aligned_cols=35  Identities=17%  Similarity=0.106  Sum_probs=31.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+++++|.| +|.+|.=+++.++.+|.+|..+.+++
T Consensus        31 ~~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          31 NSGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCcEEEEC-CcHHHHHHHHHhhcccceEEEEeccc
Confidence            457899999 89999999988889999999999764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.061  Score=37.64  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=28.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|+.|+.++..++.+|.+|.++.+.
T Consensus         4 DvvVIG-~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIG-GGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCEEEEEecc
Confidence            489999 8999999999999999999999865

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.38  E-value=0.067  Score=37.59  Aligned_cols=31  Identities=19%  Similarity=0.170  Sum_probs=28.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .++|+| +|+.|+.++..++.+|.+|.++.+.
T Consensus         7 DlvVIG-~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIG-GGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCcEEEEecC
Confidence            489999 8999999999999999999999864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.41  Score=32.44  Aligned_cols=67  Identities=18%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhcCCCeeee
Q 029543           65 IMPSVTAFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKV-DLLKNKFGFDDAFN  135 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~-~~~~~~~g~~~vi~  135 (192)
                      +|.....+..|. ..++ -.|++|+|.|-+.-+|.=+..+....|++|+.+......+ +.++   .+|.+|.
T Consensus        18 PcTp~aI~~lL~-~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~~---~ADivI~   86 (166)
T d1b0aa1          18 PCTPRGIVTLLE-RYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVE---NADLLIV   86 (166)
T ss_dssp             CHHHHHHHHHHH-HTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHH---HCSEEEE
T ss_pred             CchHHHHHHHHH-HcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHHh---hhhHhhh
Confidence            444444445553 3343 4699999999888899999999999999998888665443 3333   2554443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.096  Score=36.33  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .+.+|.|+| .|.||...++.++.+|.+|+..++..
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEeeccccc
Confidence            578999999 99999999999999999999999764

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.28  E-value=0.07  Score=37.41  Aligned_cols=73  Identities=12%  Similarity=0.025  Sum_probs=47.4

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      +++..++.|.+.+++||||+.+++++..+...+.+.. ....++.+|.+.....+....  +..+++.||+|.+.-
T Consensus        21 l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~-~~~~P~i~GHE~~G~Vv~~G~--~v~~~~~GdrV~~~~   93 (198)
T d1p0fa1          21 LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSKFPVILGHEAVGVVESIGA--GVTCVKPGDKVIPLF   93 (198)
T ss_dssp             CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSS-CCCSSBCCCCCEEEEEEEECT--TCCSCCTTCEEEECS
T ss_pred             CEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecc-ccccccccceeeeeeeeecCc--ccccCcCCCEEEEEe
Confidence            5666778888889999999999999998876655432 233566667662211111000  234577899998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.1  Score=37.98  Aligned_cols=34  Identities=21%  Similarity=0.140  Sum_probs=29.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      ...+|+|+| +|--|+.++..++..|.+|++...+
T Consensus         4 ~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            456799999 8999999998888889999998754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.27  E-value=0.15  Score=35.56  Aligned_cols=44  Identities=25%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      -++++++||=+| +|+ |..+..+++ .|++|+++|.|++-++.+++
T Consensus        34 ~l~~~~~ILDiG-cG~-G~~~~~la~-~~~~v~giD~S~~~i~~ak~   77 (226)
T d1ve3a1          34 YMKKRGKVLDLA-CGV-GGFSFLLED-YGFEVVGVDISEDMIRKARE   77 (226)
T ss_dssp             SCCSCCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCEEEEEC-CCc-chhhhhHhh-hhcccccccccccchhhhhh
Confidence            357889999999 444 778888887 48899999999998888874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.25  E-value=0.15  Score=35.30  Aligned_cols=38  Identities=26%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +|.|+| .|=+|+.++..+ +.|.+|++.|.++++.+.++
T Consensus         2 kI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHHHHh
Confidence            588999 999999877555 57999999999999998886

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.43  Score=31.80  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=37.6

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCC--HHHHHHHHHhcCCCeeeecC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLA--GCHVVGSAGS--KEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~--~~~~~~~~~~~g~~~vi~~~  137 (192)
                      ++|.|.|++|.||..++.+.+..  .++|++.+-+  -+.+.....+|.+..++-.+
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d   58 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDD   58 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESS
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhccccccc
Confidence            47999999999999999999886  3477666533  34443333378887765443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.08  E-value=0.1  Score=39.85  Aligned_cols=31  Identities=19%  Similarity=0.173  Sum_probs=26.3

Q ss_pred             CEEEEeCCCchHHHHHHH-HHHHcCCEEEEEe
Q 029543           85 EYVYVSAASGAVGQLVGQ-FAKLAGCHVVGSA  115 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q-~a~~~Ga~Vi~~~  115 (192)
                      -+|||+||+|-||..++. |.+..|.+|+++|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            479999999999988775 6667789999987

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.077  Score=36.95  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|..|+.++..+...|.+|.++++++
T Consensus         7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            389999 89999998887777899999999864

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.99  E-value=0.22  Score=38.39  Aligned_cols=85  Identities=18%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCCe--------------eeecCCcccHHHHHHhhccC-
Q 029543           92 ASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF---GFDD--------------AFNYKEEPDLDVALKRMFLC-  152 (192)
Q Consensus        92 a~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~~~--------------vi~~~~~~~~~~~i~~~~~~-  152 (192)
                      +.++.|...+++|+..|+ +|++.|.+++-.+.+++.+   +...              .+..... |....+.+.... 
T Consensus        52 ~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~-Da~~~~~~~~~~f  130 (375)
T d2dula1          52 ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHD-DANRLMAERHRYF  130 (375)
T ss_dssp             SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEES-CHHHHHHHSTTCE
T ss_pred             cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehh-hhhhhhHhhcCcC
Confidence            377788899999998898 8999999999999987432   2211              1111122 444444433211 


Q ss_pred             Cc---cccc--HHHHHHHHHhhcCCCeEEE
Q 029543          153 WV---DFVG--IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       153 g~---d~~g--~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+   |.-|  .+.++.|+++++.+|++.+
T Consensus       131 DvIDiDPfGs~~pfldsAi~a~~~~Gll~v  160 (375)
T d2dula1         131 HFIDLDPFGSPMEFLDTALRSAKRRGILGV  160 (375)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             CcccCCCCCCcHHHHHHHHHHhccCCEEEE
Confidence            22   6666  4699999999999997644

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.63  Score=35.24  Aligned_cols=56  Identities=25%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAF  134 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi  134 (192)
                      +...+++++.|+... +|.-|..++..|+.+|.+.+++..   +++|.+.++ .+|++.+.
T Consensus        90 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~-~~GA~vv~  148 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPT-SGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLR-ALGAEIVR  148 (355)
T ss_dssp             HHTCSCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHH-HTTCEEEE
T ss_pred             HcCCcccCceEEEec-ccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHH-hcCCeEEE
Confidence            455666777766666 999999999999999997555443   367889898 99997654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.26  Score=37.15  Aligned_cols=50  Identities=18%  Similarity=0.205  Sum_probs=42.1

Q ss_pred             HHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Q 029543           73 AGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLK  125 (192)
Q Consensus        73 ~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  125 (192)
                      +.+ +..+++++++|+=.|  .|.|.++.++|+..++ ++++++.+++..+.++
T Consensus       142 ~~~-~~~~l~~~~~vlD~G--cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         142 QMI-DEIKMTDDDLFVDLG--SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHH-HHSCCCTTCEEEEET--CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHH-HHcCCCCCCEEEEcC--CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            344 677899999999988  5678899999999988 8999999998777665

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.81  E-value=0.22  Score=33.02  Aligned_cols=38  Identities=24%  Similarity=0.161  Sum_probs=31.8

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKV  121 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~  121 (192)
                      .+.+|.|+| +|.+|..++..+...+.  +++..|+.+++.
T Consensus         5 ~~~KI~IiG-aG~vG~~~a~~l~~~~l~~el~L~Di~~~~~   44 (148)
T d1ldna1           5 GGARVVVIG-AGFVGASYVFALMNQGIADEIVLIDANESKA   44 (148)
T ss_dssp             TSCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence            467899999 69999999988887774  799999988763

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.80  E-value=0.081  Score=36.94  Aligned_cols=73  Identities=12%  Similarity=-0.015  Sum_probs=47.5

Q ss_pred             hccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           16 QNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        16 ~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      +++..++.|.+.+++||||+.+++++..+...+.+. .....++.+|.+...-..+..  ....+++.||+|++.-
T Consensus        21 l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~-~~~~~P~i~GHE~~G~Vv~vG--~~v~~~~vGdrV~v~~   93 (198)
T d2jhfa1          21 FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGT-LVTPLPVIAGHEAAGIVESIG--EGVTTVRPGDKVIPLF   93 (198)
T ss_dssp             CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTS-SCCCSSBCCCCSEEEEEEEEC--TTCCSCCTTCEEEECS
T ss_pred             CEEEEEECCCCCCCEEEEEEEEEecccccceeecCC-cccccceecccceeEEEEecC--ccccCcCCCCEEEEee
Confidence            566677788888999999999999999887666543 223345666665221111000  0233578899998865

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.3  Score=32.21  Aligned_cols=36  Identities=11%  Similarity=-0.044  Sum_probs=31.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEK  120 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~  120 (192)
                      -++++|.| .|.+|..+++..+..|.+|++++.++++
T Consensus         3 knHiII~G-~g~~g~~l~~~L~~~~~~v~vId~d~~~   38 (153)
T d1id1a_           3 KDHFIVCG-HSILAINTILQLNQRGQNVTVISNLPED   38 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEeccchh
Confidence            46799999 8999999999999899999999987754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.67  E-value=0.32  Score=34.45  Aligned_cols=49  Identities=20%  Similarity=0.254  Sum_probs=38.7

Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      +.......+.++||=.| +|+ |..+..+++ .|++|++++.|++-++.+++
T Consensus        33 ~~~~~~~~~~~~iLDiG-cGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~   81 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLA-CGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARR   81 (251)
T ss_dssp             HHHHTCSSCCCEEEEET-CTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEeC-CCC-Cccchhhcc-cceEEEEEeecccccccccc
Confidence            33445666788999999 665 888888887 58899999999988888774

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.66  E-value=0.062  Score=40.15  Aligned_cols=32  Identities=13%  Similarity=0.119  Sum_probs=26.1

Q ss_pred             EEEEeCCCchHHHHHHHHHH-----HcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAK-----LAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~-----~~Ga~Vi~~~~~~  118 (192)
                      .|+|.| +|++|++++.++.     ..|.+|+++++++
T Consensus         9 DV~IvG-aG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVG-AGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            499999 8999998887663     4689999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.65  E-value=0.076  Score=35.92  Aligned_cols=31  Identities=16%  Similarity=0.097  Sum_probs=25.7

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGS  114 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~  114 (192)
                      .+++|+|.| +|.+|.-++..++.+|.++.++
T Consensus         2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVG-TGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEEC-CcHHHHHHHHHHHHcCCceEEE
Confidence            478999999 8999999999888888754433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.55  E-value=0.17  Score=33.46  Aligned_cols=38  Identities=21%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDL  123 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~  123 (192)
                      +|.|+||+|.+|..++.+....+.  +++.++.++.+.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a   41 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA   41 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh
Confidence            689999889999999998888876  79999987655433

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.53  E-value=0.19  Score=33.53  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVD  122 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~  122 (192)
                      |..+|.|+| +|.+|..++.++...+. +++..|+++++.+
T Consensus         2 p~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~~~~~~   41 (150)
T d1t2da1           2 PKAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence            456899999 69999988888888887 8999998876543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.49  E-value=0.76  Score=34.18  Aligned_cols=59  Identities=24%  Similarity=0.237  Sum_probs=43.2

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCCeeeec
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA---GSKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~---~~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +...++.+...+|...+|..|..++..|+.+|.+.+++.   .++.|++.++ .+|++.++..
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~-~~Ga~vi~~~  118 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILL-AFGVELVLTD  118 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHH-HTTCEEEEEC
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhh-ccCcceEEee
Confidence            444556665666666699999999999999999644444   3367888888 9999766543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.47  E-value=0.067  Score=40.33  Aligned_cols=31  Identities=16%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEe
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSA  115 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~  115 (192)
                      .+|||+||+|-||..++..+...|.  +|++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            5799999999999999987777776  566665

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.45  E-value=0.096  Score=36.49  Aligned_cols=30  Identities=17%  Similarity=0.070  Sum_probs=27.1

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      |+|+| +||-|+.++..+...|.+|.++++.
T Consensus         6 viIIG-gGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIG-AGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCeEEEEecc
Confidence            88899 8999999999999999999999854

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.36  E-value=0.089  Score=36.27  Aligned_cols=32  Identities=16%  Similarity=0.127  Sum_probs=27.8

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      ..|+|+| +|+.|+.++..+...|.+++++++.
T Consensus         6 ~~VvIIG-gGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVG-SGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHcCCcEEEEEee
Confidence            5799999 8999999998888889998888743

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.11  Score=36.26  Aligned_cols=30  Identities=17%  Similarity=0.105  Sum_probs=27.2

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      |+|+| +|+.|+.++..+...|.+|.+++..
T Consensus         6 viIIG-~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIG-GGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCEEEEEecc
Confidence            78889 8999999999999999999999854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.28  E-value=0.096  Score=38.65  Aligned_cols=32  Identities=25%  Similarity=0.166  Sum_probs=28.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|..|++++.-+...|++|++++..+
T Consensus        18 DVlVIG-~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVG-SGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            489999 89999999988888999999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.99  E-value=0.12  Score=36.35  Aligned_cols=33  Identities=21%  Similarity=0.110  Sum_probs=26.7

Q ss_pred             EEEEeCCCchHHHHHHHHHH-H-cCCEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAK-L-AGCHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~-~-~Ga~Vi~~~~~~~  119 (192)
                      +|+|+| +|+.|+.+++.++ + .|.+|++.++.+.
T Consensus         3 kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            799999 8999999997554 3 4779999987753

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.94  E-value=0.89  Score=33.55  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=42.2

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeC--CHHHHHHHHHhcCCCeeee
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVG-SAG--SKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~-~~~--~~~~~~~~~~~~g~~~vi~  135 (192)
                      +...+.++++|+... +|.-|..++..|+..|.+.++ +..  ++.|.+.++ .+|+..+..
T Consensus        54 ~~g~~~~~~~vv~~S-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~vv~~  113 (310)
T d1y7la1          54 KDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLC-GLGVNLVLT  113 (310)
T ss_dssp             HTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEEEEE
T ss_pred             HcCCCCCCceeeeec-CCCchHHHHHHHHHhhccccccchhhhhhhhhhhHH-HhCCceEec
Confidence            344567777777766 999999999999999995333 332  356788888 999977653

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.76  Score=31.15  Aligned_cols=68  Identities=12%  Similarity=-0.033  Sum_probs=47.0

Q ss_pred             chhHHHHHHHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeee
Q 029543           65 IMPSVTAFAGLYEICSP-KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        65 ~~~~~ta~~~l~~~~~~-~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~  135 (192)
                      +|.....+..+ +..++ -.|++|+|.|-+.-+|.=++.+....|+.|+.+......+....  ..+|.+|.
T Consensus        20 PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~--~~aDivi~   88 (170)
T d1a4ia1          20 PCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV--NKGDILVV   88 (170)
T ss_dssp             CHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH--TTCSEEEE
T ss_pred             CChHHHHHHHH-HHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH--hhccchhh
Confidence            44555555555 33344 37999999998888999999999999999999887655443322  24665553

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.80  E-value=0.26  Score=32.87  Aligned_cols=36  Identities=17%  Similarity=-0.020  Sum_probs=29.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSK  118 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~  118 (192)
                      ..+++|+|+| .|.+|.=++..+..+|+ .|+.+.|++
T Consensus        43 ~~~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLG-AGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3467899999 89999999988888899 687887654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.67  E-value=0.12  Score=38.52  Aligned_cols=34  Identities=18%  Similarity=-0.018  Sum_probs=29.7

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .-.|+|+| +|..|++++..++..|.+|++.++.+
T Consensus         7 ~~dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVG-AGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            34599999 89999999999999999999999764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.63  E-value=0.1  Score=36.80  Aligned_cols=31  Identities=13%  Similarity=-0.046  Sum_probs=27.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|+.|+.++..+...|.+|.+++..
T Consensus         5 DviVIG-~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIG-GGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999 8999999999999999999999843

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.54  E-value=0.38  Score=32.15  Aligned_cols=47  Identities=9%  Similarity=0.053  Sum_probs=35.1

Q ss_pred             EEEEeCCCchHHHH-HHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           86 YVYVSAASGAVGQL-VGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~-~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      +|.|+| +|.+|.- .+...+.. +..++++++++++.+.+.++++...+
T Consensus         3 rvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   51 (167)
T d1xeaa1           3 KIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSAT   51 (167)
T ss_dssp             EEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCC
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccc
Confidence            588999 8999954 56666555 45888899999888888767776543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=90.52  E-value=0.31  Score=32.23  Aligned_cols=38  Identities=21%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVD  122 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~  122 (192)
                      ..+|.|+| +|.+|..++..+...|.  +++.+|+++++.+
T Consensus         5 ~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~   44 (146)
T d1ez4a1           5 HQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK   44 (146)
T ss_dssp             BCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence            45899999 69999998887777763  8999999887643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=90.47  E-value=0.13  Score=37.05  Aligned_cols=32  Identities=9%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|.+|+.++..+...|.+|+++++.+
T Consensus         6 DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIG-GGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            489999 89999988877777899999999753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.44  E-value=0.12  Score=38.54  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .-.|+|+| +|..|+.++.-+...|++|++++..
T Consensus        19 ~~DVvVIG-aG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          19 TTQVLVVG-AGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            34599999 8999999998888889999999864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.38  E-value=0.27  Score=34.49  Aligned_cols=47  Identities=17%  Similarity=0.118  Sum_probs=37.8

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  126 (192)
                      ...++||++||=.|+ | .|..+..+++..+. +|++++.+++.++.+++
T Consensus        51 ~l~lkpg~~VLDlGc-G-~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~   98 (209)
T d1nt2a_          51 RLKLRGDERVLYLGA-A-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   98 (209)
T ss_dssp             CCCCCSSCEEEEETC-T-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCC-c-CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHH
Confidence            457899999999994 3 35677788887765 99999999998888763

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.26  E-value=0.12  Score=38.78  Aligned_cols=37  Identities=35%  Similarity=0.289  Sum_probs=28.2

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKE  119 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~  119 (192)
                      .+.+|++||-.| +|. |.++..+|+ .|+ +|++++.++.
T Consensus        30 ~~~~~~~VLDiG-cG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          30 HLFKDKVVLDVG-SGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHTTCEEEEET-CTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             ccCCcCEEEEEe-cCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            345799999999 554 777776666 687 8999998864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.26  E-value=1.5  Score=28.50  Aligned_cols=93  Identities=15%  Similarity=-0.020  Sum_probs=55.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-hcC-----------CCeeeecCCcccHHHHHHhhccC-
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN-KFG-----------FDDAFNYKEEPDLDVALKRMFLC-  152 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~~g-----------~~~vi~~~~~~~~~~~i~~~~~~-  152 (192)
                      +|.|+| .|-+|..++.-.+..|.+|++.++++++...+++ ..+           +|.++-.-..+...+.+.+.... 
T Consensus         2 kIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             EEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             EEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            578999 9999999998888889999998877655544431 222           23333222221444444443322 


Q ss_pred             --Cc-cccc--HHHHHHHHHhhcCCCeEEEee
Q 029543          153 --WV-DFVG--IEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       153 --g~-d~~g--~~~~~~~~~~l~~~G~v~~G~  179 (192)
                        .+ |++.  ....+...+.++..+++-...
T Consensus        81 ~~~~id~st~~p~~~~~l~~~~~~~~~~d~~v  112 (152)
T d1i36a2          81 RGIYVDINNISPETVRMASSLIEKGGFVDAAI  112 (152)
T ss_dssp             CSEEEECSCCCHHHHHHHHHHCSSSEEEEEEE
T ss_pred             CceeeccCcCCHHHHHHHHHHHhccCCCcccc
Confidence              12 6544  445666667776666544443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.19  Score=36.06  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAG  116 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~  116 (192)
                      ..+|+|.| +|++|..+++.+...|. +++.+|.
T Consensus        30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC
Confidence            57899999 89999999998888999 8888873

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=90.24  E-value=0.16  Score=36.84  Aligned_cols=94  Identities=5%  Similarity=-0.048  Sum_probs=59.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhc--cCCc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMF--LCWV  154 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~--~~g~  154 (192)
                      +......+.+||=.|  .|+|..+.++++....+|.+++.+++-++.+++++.....++.... ++.    ++.  .+.+
T Consensus        87 ~~l~~~~~~~vLD~G--cG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-d~~----~~~~~~~~f  159 (254)
T d1xtpa_          87 ASLPGHGTSRALDCG--AGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILA-SME----TATLPPNTY  159 (254)
T ss_dssp             HTSTTCCCSEEEEET--CTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-CGG----GCCCCSSCE
T ss_pred             hhCCCCCCCeEEEec--ccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEc-ccc----ccccCCCcc
Confidence            334455677899888  4568888888876666999999999999999855543333332221 221    111  1122


Q ss_pred             c---------cccH----HHHHHHHHhhcCCCeEEE
Q 029543          155 D---------FVGI----EYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       155 d---------~~g~----~~~~~~~~~l~~~G~v~~  177 (192)
                      |         ....    ..+..+.+.|+|+|++++
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence            2         2221    357888899999996544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.13  Score=37.86  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=26.6

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      |+|+| +|..|+.++..++..|.+|++++++
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence            78999 8999999998888889999999854

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.12  Score=38.36  Aligned_cols=32  Identities=16%  Similarity=0.083  Sum_probs=28.0

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|..|+.++..+...|.+|.++..++
T Consensus         3 dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVG-SGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            489999 89999999988888899999999764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.95  E-value=0.13  Score=38.25  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=27.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|..|+.++..+...|++|+++++.+
T Consensus        25 DVvVIG-~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIG-SGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEEC-SSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            399999 89999999988888899999998653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.93  E-value=1.6  Score=29.27  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHHHHhcCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA-GCHVVGS-AGSKEKVDLLKNKFGF  130 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~~~~g~  130 (192)
                      ++.|+| +|.+|...++..+.. +++++++ ++++++.+.+.++++.
T Consensus         3 ki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~   48 (184)
T d1ydwa1           3 RIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY   48 (184)
T ss_dssp             EEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC
T ss_pred             EEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc
Confidence            588999 899999888888776 5677754 7777776666546665

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=89.90  E-value=0.37  Score=31.84  Aligned_cols=36  Identities=22%  Similarity=0.172  Sum_probs=29.9

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKV  121 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~  121 (192)
                      ++|.|+| +|.+|..++..+...|.  +++..+.++++.
T Consensus         2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            5789999 79999988887777764  899999988764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.60  E-value=0.36  Score=31.83  Aligned_cols=48  Identities=17%  Similarity=0.097  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhCCCCCCEEEEe--CCCchHHHHHHHHHHHcCCEEEEEeCCHH
Q 029543           69 VTAFAGLYEICSPKKGEYVYVS--AASGAVGQLVGQFAKLAGCHVVGSAGSKE  119 (192)
Q Consensus        69 ~ta~~~l~~~~~~~~g~~VlV~--Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~  119 (192)
                      .|....+ . .+..+++.++|+  | .|-+|+-+++....+|.+|..+.+.+.
T Consensus        26 ~t~~d~l-~-~~~~~~~~vvi~d~g-gg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          26 LTPEQVM-D-GKKKIGKRVVILNAD-TYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             ECHHHHH-H-TCSCCCSEEEEEECC-CSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ECHHHHh-c-CccccCCceEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4666666 2 466788888887  6 799999999999999999999998753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.58  E-value=0.13  Score=36.21  Aligned_cols=33  Identities=15%  Similarity=-0.011  Sum_probs=27.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcC-------CEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAG-------CHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~G-------a~Vi~~~~~~  118 (192)
                      .+|+|+| +|+-|++++..+...|       ++|.+.++.+
T Consensus         3 ~~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            3799999 8999999997766655       5799998765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.41  E-value=0.15  Score=37.96  Aligned_cols=31  Identities=13%  Similarity=0.041  Sum_probs=27.6

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      |+|+| +|+.|+.++--|+..|++|+++...+
T Consensus         8 VvVIG-~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIG-GGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEEC-CSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            89999 89999999988888999999998653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.41  E-value=0.18  Score=37.64  Aligned_cols=33  Identities=9%  Similarity=0.011  Sum_probs=26.5

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~  118 (192)
                      ++|+|+| +|+.|++++..++..|  .+|++..+++
T Consensus         5 KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            6899999 8999998886555444  4899999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.33  E-value=0.29  Score=32.33  Aligned_cols=33  Identities=21%  Similarity=0.157  Sum_probs=28.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~  118 (192)
                      +|.|+||+|.+|..++.++...+.  +++.+++.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            589999889999999998888884  889998764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.87  Score=33.38  Aligned_cols=54  Identities=15%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCee
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKN---KFGFDDA  133 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~v  133 (192)
                      ....++|++||=.- +++=|..+ +++... ..+|++.+.++.|+..+++   ++|...+
T Consensus        97 ~L~~~~g~~vLD~C-AaPGgKt~-~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~  154 (284)
T d1sqga2          97 WLAPQNGEHILDLC-AAPGGKTT-HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT  154 (284)
T ss_dssp             HHCCCTTCEEEEES-CTTCHHHH-HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCE
T ss_pred             ccCccccceeEecc-Cccccchh-hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccce
Confidence            34778999988554 34444433 334333 3589999999999877753   5677643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.07  E-value=0.81  Score=29.06  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             HHhCCCCCCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 029543           77 EICSPKKGEYVYVSAASG-AVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G-~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      +.+++..-+.+++.-..- ..=.++...++..+. ++++...+++..+.++ ++|++.+|++.
T Consensus        58 ~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~-~~Gad~vi~p~  119 (134)
T d2hmva1          58 LSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE-KIGADRIIHPE  119 (134)
T ss_dssp             HHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHH-HHTCSEEECHH
T ss_pred             hccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHH-HCCCCEEEChH
Confidence            344566667666643233 333455566677787 8999999999999999 99999999765

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.99  E-value=0.24  Score=35.64  Aligned_cols=30  Identities=20%  Similarity=0.124  Sum_probs=27.4

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      ++|+| +|+.|+.++..|...|.+|..+++.
T Consensus         4 viVIG-~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIG-GGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCeEEEEecC
Confidence            78999 8999999999999999999999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=88.94  E-value=0.36  Score=31.60  Aligned_cols=37  Identities=14%  Similarity=-0.069  Sum_probs=30.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDL  123 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~  123 (192)
                      +|.|+| +|.+|..++..+...+.  +++..|.++++.+.
T Consensus         2 KI~IIG-aG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~   40 (142)
T d1guza1           2 KITVIG-AGNVGATTAFRLAEKQLARELVLLDVVEGIPQG   40 (142)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCceEEEeccccccchh
Confidence            588999 69999998888887774  89999988876543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.83  E-value=0.2  Score=36.13  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=26.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|-+|+.++.-+...|.+|+++++.
T Consensus         5 DvvIIG-aGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVG-AGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            389999 8999999987777789999999864

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.71  E-value=0.28  Score=34.95  Aligned_cols=48  Identities=19%  Similarity=0.177  Sum_probs=39.9

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~  126 (192)
                      +...++||++||=.|+  +.|..+..+++..|  .+|++++.+++.++.+++
T Consensus        67 ~~l~i~pG~~VLDlGa--GsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~  116 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             CCCCCCTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             cccccCCCCEEEEecc--CCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            4457899999999984  34778889999876  389999999999888874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=88.61  E-value=0.64  Score=31.18  Aligned_cols=38  Identities=13%  Similarity=0.029  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKV  121 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~  121 (192)
                      +..+|.|+| +|.+|..++..+...|.  +++.+|.++++.
T Consensus        19 ~~~KV~IIG-aG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          19 PNNKITVVG-VGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CSSEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            457899999 69999999988888876  799999887664

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.54  E-value=0.56  Score=30.81  Aligned_cols=36  Identities=31%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVD  122 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~  122 (192)
                      +|.|+| +|.+|..++..+...+.  +++.++.++++.+
T Consensus         3 Ki~IIG-aG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           3 KLAVIG-AGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            688999 69999999888877775  7999998887644

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.52  E-value=0.37  Score=34.66  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=29.1

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFA-KLAGCHVVGSAGS  117 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~  117 (192)
                      -.|.+|+|.| .|.+|..+++++ +..|++|+++..+
T Consensus        30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccc
Confidence            3689999999 999999999866 5679998887643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.42  E-value=0.19  Score=36.55  Aligned_cols=33  Identities=21%  Similarity=0.143  Sum_probs=27.3

Q ss_pred             CEEEEeCCCchHHHHHHH-HHHHcCCEEEEEeCCH
Q 029543           85 EYVYVSAASGAVGQLVGQ-FAKLAGCHVVGSAGSK  118 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q-~a~~~Ga~Vi~~~~~~  118 (192)
                      -.|+|+| +|+.|+.++. +|+..|.+|.++++++
T Consensus        34 ~DViVIG-aGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVG-AGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4499999 8999998875 5665799999999774

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.37  E-value=0.4  Score=31.44  Aligned_cols=38  Identities=11%  Similarity=0.039  Sum_probs=30.0

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDL  123 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~  123 (192)
                      .+|.|+| +|.+|..++.+....+. .++..+.++++.+-
T Consensus         2 ~KI~IIG-aG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~   40 (142)
T d1uxja1           2 KKISIIG-AGFVGSTTAHWLAAKELGDIVLLDIVEGVPQG   40 (142)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSSSSHHHH
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhCCcceEEEEeeccccchh
Confidence            3789999 69999988877776676 99999988765443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.28  E-value=0.54  Score=30.66  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=29.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVDL  123 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~  123 (192)
                      +|.|+| +|.+|..++..+...+.  ++...|.++++.+-
T Consensus         2 KI~IIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g   40 (140)
T d1a5za1           2 KIGIVG-LGRVGSSTAFALLMKGFAREMVLIDVDKKRAEG   40 (140)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEecccccccc
Confidence            578999 69999988877776664  89999988876543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.26  E-value=0.65  Score=31.72  Aligned_cols=40  Identities=15%  Similarity=0.058  Sum_probs=32.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      .+.+||=.| +| .|..+..+++ .|++|++++.++.-++.++
T Consensus        30 ~~grvLDiG-cG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~   69 (198)
T d2i6ga1          30 APGRTLDLG-CG-NGRNSLYLAA-NGYDVTAWDKNPASMANLE   69 (198)
T ss_dssp             CSCEEEEET-CT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHH
T ss_pred             CCCcEEEEC-CC-CCHHHHHHHH-HhhhhccccCcHHHHHHHH
Confidence            344899999 54 8888888876 5899999999998888765

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.21  E-value=0.34  Score=33.56  Aligned_cols=70  Identities=13%  Similarity=-0.059  Sum_probs=40.3

Q ss_pred             ccCCCCCCCeEEEEEEEeeeChhhhhhhcccCCCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           21 QNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLDTSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        21 ~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      +..+...+++||||+.++++++.+...+.+.......++.+|.+...-..+... .-....+.||+|.+..
T Consensus        26 ~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~-~v~~~~k~GdrV~~~~   95 (192)
T d1piwa1          26 YDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGP-KSNSGLKVGQRVGVGA   95 (192)
T ss_dssp             ECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECT-TCCSSCCTTCEEEECS
T ss_pred             ccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccc-ccccccCCCCeeeEee
Confidence            444445788999999999999987655544333334456667652211111000 0012356799987543

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.86  E-value=2.4  Score=30.72  Aligned_cols=60  Identities=20%  Similarity=0.192  Sum_probs=43.3

Q ss_pred             HHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCCeee
Q 029543           72 FAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA---GSKEKVDLLKNKFGFDDAF  134 (192)
Q Consensus        72 ~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~---~~~~~~~~~~~~~g~~~vi  134 (192)
                      .+++ +...+.++.+|+..+ +|.-|..++..|+.+|.+++++.   .++.+.+.++ .+|++.+.
T Consensus        50 ~~a~-~~g~~~~~~~vv~as-sGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~-~~ga~v~~  112 (302)
T d1fcja_          50 WDAE-KRGVLKPGVELVEPT-NGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK-ALGANLVL  112 (302)
T ss_dssp             HHHH-HHTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEEEE
T ss_pred             HHHH-HcCCCCCCceEEEec-cccchhHHHHHHHHhccCCceEEeecCcHHHHHHHH-HhccceEE
Confidence            3444 455677777766666 99999999999999998543333   3457788888 99997553

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=87.68  E-value=0.29  Score=35.17  Aligned_cols=32  Identities=13%  Similarity=0.121  Sum_probs=28.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .++|+| +|+.|+.++..+..+|.+|.++.+.+
T Consensus        44 DvvVIG-gG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIG-GGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            488889 89999999999999999999998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.60  E-value=1.1  Score=29.20  Aligned_cols=60  Identities=12%  Similarity=0.013  Sum_probs=47.9

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GC-HVVGSAGSKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga-~Vi~~~~~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      +.+++..-+.+++.-..-..=.+++..+|.. +. ++++...+++..+.++ ++|++.++++.
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~-~~Gad~vi~p~  126 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK-MVHPDIILSPQ  126 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHH-TTCCSEEECHH
T ss_pred             HHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHH-HCCCCEEECHH
Confidence            6678888888887654555566777888876 34 8999999999999999 99999999764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.38  E-value=0.43  Score=34.01  Aligned_cols=47  Identities=15%  Similarity=0.106  Sum_probs=38.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAG-CHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~  125 (192)
                      +...+++|++||=.|+  |.|..+..+++... .+|++++.+++-++.++
T Consensus        68 ~~l~ikpG~~VLDlGc--GsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~  115 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGA--SAGTTPSHVADIADKGIVYAIEYAPRIMRELL  115 (230)
T ss_dssp             CCCCCCTTCEEEEESC--CSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH
T ss_pred             HhCCCCCCCEEEEeCE--EcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH
Confidence            4557899999999994  33677778888654 49999999999888887

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=87.14  E-value=1.8  Score=31.02  Aligned_cols=90  Identities=14%  Similarity=-0.004  Sum_probs=55.0

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCcccc-
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWVDFV-  157 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~d~~-  157 (192)
                      ...++.+||=.| + |.|..+..+++.. +.+++++|.+++-++.+++...--..+..+-. ++     ....+.+|.+ 
T Consensus        81 ~~~~~~~iLDiG-c-G~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~-~l-----~~~~~sfD~v~  152 (268)
T d1p91a_          81 LDDKATAVLDIG-C-GEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RL-----PFSDTSMDAII  152 (268)
T ss_dssp             SCTTCCEEEEET-C-TTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SC-----SBCTTCEEEEE
T ss_pred             cCCCCCEEEEeC-C-CCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehh-hc-----cCCCCCEEEEe
Confidence            345678899888 3 4467777788775 66999999999999998833322122211111 10     0111123432 


Q ss_pred             ---cHHHHHHHHHhhcCCCeEEE
Q 029543          158 ---GIEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       158 ---g~~~~~~~~~~l~~~G~v~~  177 (192)
                         ....+++..+.|||+|++++
T Consensus       153 ~~~~~~~~~e~~rvLkpgG~l~~  175 (268)
T d1p91a_         153 RIYAPCKAEELARVVKPGGWVIT  175 (268)
T ss_dssp             EESCCCCHHHHHHHEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHhCCCcEEEE
Confidence               12367788999999996544

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.72  Score=29.70  Aligned_cols=86  Identities=9%  Similarity=-0.005  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCchH--------HHHHHH---HHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-ecCCcccHHHHHHhhc
Q 029543           83 KGEYVYVSAASGAV--------GQLVGQ---FAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAF-NYKEEPDLDVALKRMF  150 (192)
Q Consensus        83 ~g~~VlV~Ga~G~i--------G~~~~q---~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~i~~~~  150 (192)
                      .-++|||.| +|+.        -.+++|   ..|..|++++.+..+++-...-. .. +|++. .+-+.+++.+.++...
T Consensus         6 ~~kkvlilG-sGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~-d~-aD~lYfePlt~e~v~~Ii~~E~   82 (127)
T d1a9xa3           6 DIKSILILG-AGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP-EM-ADATYIEPIHWEVVRKIIEKER   82 (127)
T ss_dssp             SCCEEEEEC-CCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG-GG-SSEEECSCCCHHHHHHHHHHHC
T ss_pred             CCCEEEEEC-CCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh-hh-cceeeeecCCHHHHHHHHHHhC
Confidence            347899999 7875        234444   44556999999999987543221 11 45543 2222215556666555


Q ss_pred             cCCc-ccccHH-HHHHHHHhhcC
Q 029543          151 LCWV-DFVGIE-YCRSLLLVLLF  171 (192)
Q Consensus       151 ~~g~-d~~g~~-~~~~~~~~l~~  171 (192)
                      ++++ -..|+. .++.++++.+.
T Consensus        83 pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          83 PDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             CSEEECSSSHHHHHHHHHHHHHT
T ss_pred             cCCeEEEeeeehHhHHHHHHHHc
Confidence            5455 556655 56666665443

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=86.86  E-value=0.094  Score=36.05  Aligned_cols=32  Identities=0%  Similarity=-0.141  Sum_probs=25.9

Q ss_pred             ccccchhhhhhhh---ccccccCCCCCCCeEEEEE
Q 029543            4 SIRNTSKRLCKIQ---NILKQNAAEGSKDTVLLKN   35 (192)
Q Consensus         4 ~~~~g~~~~C~~~---~~~g~~~~g~~~~~vlv~~   35 (192)
                      .|+++..++|.+.   ..++...+|+++||++|+.
T Consensus        94 ~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~  128 (177)
T d1jqba1          94 EVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVND  128 (177)
T ss_dssp             HHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESS
T ss_pred             chhhhhhcccccccccccccCCCChhcCeeEEEEh
Confidence            4788999999875   3456678999999999974

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=86.62  E-value=0.09  Score=39.16  Aligned_cols=30  Identities=13%  Similarity=0.138  Sum_probs=23.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC------EEEEEe
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC------HVVGSA  115 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga------~Vi~~~  115 (192)
                      +|||+||+|-||..+++.....|.      +++..+
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d   37 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD   37 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEe
Confidence            599999999999999987766654      455554

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=0.066  Score=36.41  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=24.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEe
Q 029543           86 YVYVSAASGAVGQLVGQFAKLA-GCHVVGSA  115 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~  115 (192)
                      +|.|.|++|-+|+.+++.+... +.++++..
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~   36 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAAL   36 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999988875 55766554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.52  E-value=0.78  Score=29.98  Aligned_cols=36  Identities=11%  Similarity=-0.053  Sum_probs=29.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVD  122 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~  122 (192)
                      +|.|+| +|.+|..++..+...+.  +++.+|.++++.+
T Consensus         2 KI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~   39 (142)
T d1ojua1           2 KLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAV   39 (142)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred             EEEEEC-cCHHHHHHHHHHHhcCcCceEEEEecccchhh
Confidence            588999 69999988887776664  7999999887643

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.85  Score=33.96  Aligned_cols=63  Identities=21%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeeee
Q 029543           71 AFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        71 a~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi~  135 (192)
                      |++.+.....-.+..+|+... +|..|..++..++..|.+++++..   ++.|.+.++ .+|++.++.
T Consensus        62 a~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~-~~Ga~vi~~  127 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVR-GFGGEVLLH  127 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHH-HHSCEEECC
T ss_pred             HHHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhccccccceeeccccchhHHHHHHH-hcCCEEEEc
Confidence            344553333333455566666 899999999999999996555442   357888888 999976543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.44  E-value=0.74  Score=30.81  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=30.7

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHH
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEKVD  122 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~  122 (192)
                      .+|.|+| +|.+|..++..+...|.  +++.+|.++++.+
T Consensus        20 ~KI~IIG-aG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~   58 (159)
T d2ldxa1          20 CKITVVG-VGDVGMACAISILLKGLADELALVDADTDKLR   58 (159)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTSCSEEEEECSCHHHHH
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCchhhh
Confidence            5799999 69999999988887775  7999998876543

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=86.39  E-value=0.31  Score=33.07  Aligned_cols=75  Identities=17%  Similarity=0.081  Sum_probs=44.9

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---CCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      ++++..++.|...+++||||+.++++|+.+...+....   .....++.+|.+...-.....  ....+++.||+|++.-
T Consensus        12 ~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG--~~v~~~~~GdrV~~~~   89 (178)
T d1e3ja1          12 DLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG--KNVKHLKKGDRVAVEP   89 (178)
T ss_dssp             EEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEEC--TTCCSCCTTCEEEECC
T ss_pred             cEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecC--cccCCCCCCCEEEECc
Confidence            35677778888899999999999999997764443211   112234455655111000000  0123578899998754

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.37  E-value=2.8  Score=26.85  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSA  115 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  115 (192)
                      -+.+..+|+|.|-+|.-|.+..+..+.+|-+|++-+
T Consensus        11 li~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGV   46 (130)
T d1euca1          11 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGT   46 (130)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEee
Confidence            356778999999999999999999999999988766

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=86.37  E-value=0.49  Score=33.80  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=28.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|+-|.-++..|..+|+++..++.+.
T Consensus         4 DVIVIG-gG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           4 QVLIVG-AGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cEEEEC-cCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            388999 89999999999999999999888764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.25  E-value=0.31  Score=37.38  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=25.3

Q ss_pred             EEEEeCCCchHHHHHHH-HHHH-----cCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQ-FAKL-----AGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q-~a~~-----~Ga~Vi~~~~~~  118 (192)
                      .|+|.| +|+.|++++. +||+     .|.+|.++++..
T Consensus        34 DViIVG-gGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVG-AGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            599999 8999997774 4442     688999999764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.25  E-value=0.7  Score=28.79  Aligned_cols=34  Identities=9%  Similarity=-0.023  Sum_probs=26.6

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLA---GCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~---Ga~Vi~~~~~~  118 (192)
                      .++++|.| +|.+|.=++++...+   |.+|..+.+++
T Consensus        18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEEC-CChHHHHHHHHhHhhcccccccceecccc
Confidence            47899999 899999777664443   77899988764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=86.18  E-value=0.77  Score=34.23  Aligned_cols=90  Identities=21%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc-----CC--CeeeecCCcccHHHHHHhhccC-C
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF-----GF--DDAFNYKEEPDLDVALKRMFLC-W  153 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~-----g~--~~vi~~~~~~~~~~~i~~~~~~-g  153 (192)
                      .-++|||.|+  |.|..+-++++.... +|.+++.+++-.+.+++-+     ++  +.-++..-. |..+.+++.... .
T Consensus        77 ~pk~VLiiG~--G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~-Da~~~l~~~~~~yD  153 (312)
T d1uira_          77 EPKRVLIVGG--GEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-DARAYLERTEERYD  153 (312)
T ss_dssp             CCCEEEEEEC--TTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-CHHHHHHHCCCCEE
T ss_pred             CcceEEEeCC--CchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc-hHHHHhhhcCCccc
Confidence            4578999993  446666677777655 9999999999888887333     11  110111112 555555543222 1


Q ss_pred             -c--cc---cc----------HHHHHHHHHhhcCCCeE
Q 029543          154 -V--DF---VG----------IEYCRSLLLVLLFRPLK  175 (192)
Q Consensus       154 -~--d~---~g----------~~~~~~~~~~l~~~G~v  175 (192)
                       +  |.   .+          .+.++.+-+.|+++|++
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvl  191 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVM  191 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceE
Confidence             1  32   22          13567888999999954

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.13  E-value=0.79  Score=30.01  Aligned_cols=32  Identities=31%  Similarity=0.224  Sum_probs=26.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~  117 (192)
                      +|.|+||+|.+|..++..+...+.  +++..+..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            689999899999999988888876  68888853

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.05  E-value=1.9  Score=30.43  Aligned_cols=46  Identities=22%  Similarity=0.134  Sum_probs=34.4

Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 029543           71 AFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGS  117 (192)
Q Consensus        71 a~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~  117 (192)
                      -+.+++-..+--...++++.| +|..|..++++....+. +++.+|+.
T Consensus        13 ll~a~~~~g~~l~d~riv~~G-AGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          13 FLNALKLTEKKIEEVKVVVNG-IGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHHTCCTTTCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHhCCChhhcEEEEEC-hHHHHHHHHHHHHHhcccceEeecce
Confidence            344453333334577899999 89999999988888888 89999875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.04  E-value=2.9  Score=28.75  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=35.3

Q ss_pred             HHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc
Q 029543           75 LYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF  128 (192)
Q Consensus        75 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~  128 (192)
                      +....++ .|++||=.| +|. |.+++. +..+|+ +|++++.+++-++.+++..
T Consensus        41 ~~~~~dl-~Gk~VLDlG-cGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~   91 (197)
T d1ne2a_          41 IYNDGNI-GGRSVIDAG-TGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNC   91 (197)
T ss_dssp             HHHHTSS-BTSEEEEET-CTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHC
T ss_pred             HHHcCCC-CCCEEEEeC-CCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHcc
Confidence            3344455 699999988 553 555544 444677 8999999999999888433

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.00  E-value=0.34  Score=35.32  Aligned_cols=31  Identities=13%  Similarity=0.153  Sum_probs=25.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~  117 (192)
                      .|+|+| +|.+|++++.-+...|. +|++++++
T Consensus         3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            599999 89999988866656787 69999865

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=0.34  Score=33.18  Aligned_cols=75  Identities=12%  Similarity=-0.027  Sum_probs=45.2

Q ss_pred             hhccccccCCCCCCCeEEEEEEEeeeChhhhhhhcccC---CCcccccCCCCCchhHHHHHHHHHHHhCCCCCCEEEEeC
Q 029543           15 IQNILKQNAAEGSKDTVLLKNLYLSCDPYMQKRMSKLD---TSLFYSFCPGGVIMPSVTAFAGLYEICSPKKGEYVYVSA   91 (192)
Q Consensus        15 ~~~~~g~~~~g~~~~~vlv~~~~~~v~p~~~~~~~~~~---~~~~~~~~~g~~~~~~~ta~~~l~~~~~~~~g~~VlV~G   91 (192)
                      .+++..++.|...+++||||+.++++|+.+...+....   .....++.+|.+...-.....  ....+++.||+|.+..
T Consensus        18 ~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG--~~v~~~~~GdrV~~~~   95 (185)
T d1pl8a1          18 DLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVG--SSVKHLKPGDRVAIEP   95 (185)
T ss_dssp             EEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEEC--TTCCSCCTTCEEEECS
T ss_pred             eEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEec--cceeeecccccceecc
Confidence            45677788899999999999999999997765543211   111233445554111000000  0123578899998864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.89  E-value=2.2  Score=31.22  Aligned_cols=89  Identities=20%  Similarity=0.067  Sum_probs=55.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC---------CCeeeecCCcccHHHHHHhhccC
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFG---------FDDAFNYKEEPDLDVALKRMFLC  152 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~~i~~~~~~  152 (192)
                      .-++|||.|  ||-|..+-.+++..+. +|..++.+++=.+.++ ++-         ...-+-.  . |-.+.+++...+
T Consensus        80 ~pk~VLiiG--gG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~-~~f~~~~~~~~~~r~~i~~--~-Da~~~l~~~~~~  153 (290)
T d1xj5a_          80 NPKKVLVIG--GGDGGVLREVARHASIEQIDMCEIDKMVVDVSK-QFFPDVAIGYEDPRVNLVI--G-DGVAFLKNAAEG  153 (290)
T ss_dssp             CCCEEEEET--CSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHH-HHCHHHHGGGGSTTEEEEE--S-CHHHHHHTSCTT
T ss_pred             CCcceEEec--CCchHHHHHHHhcccceeeEEecCCHHHHHHHH-HhchhhhccccCCCcEEEE--c-cHHHHHhhcccc
Confidence            347899999  3445566677777776 8999999999888888 532         1111111  2 444455543332


Q ss_pred             Cc-----ccc---c-------HHHHHHHHHhhcCCCeEEE
Q 029543          153 WV-----DFV---G-------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       153 g~-----d~~---g-------~~~~~~~~~~l~~~G~v~~  177 (192)
                      .+     |+.   +       .+.++.+-++|+++|++++
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~  193 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  193 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence            22     332   2       2367888899999996544

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.23  Score=31.86  Aligned_cols=93  Identities=14%  Similarity=-0.021  Sum_probs=50.9

Q ss_pred             CCEEEEeCCCchH--H------HHHHH---HHHHcCCEEEEEeCCHHHHHHHHHhcCCCeee-ecCCcccHHHHHHhhcc
Q 029543           84 GEYVYVSAASGAV--G------QLVGQ---FAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAF-NYKEEPDLDVALKRMFL  151 (192)
Q Consensus        84 g~~VlV~Ga~G~i--G------~~~~q---~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~i~~~~~  151 (192)
                      .++|||.| +|+.  |      .+++|   ..|..|.+++.+..+++-...-. . -+|++. .+-..+++.+.++...+
T Consensus         4 ~kkvlViG-sGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~-d-~aD~lYfeplt~e~v~~Ii~~E~p   80 (121)
T d1a9xa4           4 REKIMVLG-GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDY-D-TSDRLYFEPVTLEDVLEIVRIEKP   80 (121)
T ss_dssp             SCEEEEEC-CCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTST-T-SSSEEECCCCSHHHHHHHHHHHCC
T ss_pred             CCEEEEEC-CCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcCh-h-hcCceEEccCCHHHHHHHHHHhCC
Confidence            46899999 7875  2      34444   45556999999998987443211 1 144442 22222145555555555


Q ss_pred             CCc-ccccHHHHHHHHHhhcCCCeEEEee
Q 029543          152 CWV-DFVGIEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       152 ~g~-d~~g~~~~~~~~~~l~~~G~v~~G~  179 (192)
                      .++ =..|+.+..+....|.+.|.=++|.
T Consensus        81 ~~ii~~~GGQtalnla~~L~~~gv~iLGt  109 (121)
T d1a9xa4          81 KGVIVQYGGQTPLKLARALEAAGVPVIGT  109 (121)
T ss_dssp             SEEECSSSTHHHHTTHHHHHHTTCCBCSS
T ss_pred             CEEEeehhhhhHHHHHHHHHHcCCcEECC
Confidence            455 4556654444444455566323443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.83  E-value=1.4  Score=27.80  Aligned_cols=62  Identities=16%  Similarity=0.108  Sum_probs=48.3

Q ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCCCeeeecC
Q 029543           74 GLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKNKFGFDDAFNYK  137 (192)
Q Consensus        74 ~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~g~~~vi~~~  137 (192)
                      .| +.+++..-+.+++.-..-..=..+++.+|.+.  .++++...+++..+.++ +.|++.++++.
T Consensus        54 ~L-~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~-~~G~d~vi~p~  117 (129)
T d2fy8a1          54 DL-EKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR-MAGADQVISPF  117 (129)
T ss_dssp             HH-HHTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHH-HHHCSEEECHH
T ss_pred             HH-HHhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHH-HCCCCEEEChH
Confidence            35 56788888888876535555567778888764  37999999999999999 99999998654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.76  E-value=3  Score=28.43  Aligned_cols=102  Identities=16%  Similarity=0.229  Sum_probs=60.5

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhc---CCC-eeeecCCcccHHHHHHhhcc
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKNKF---GFD-DAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~---g~~-~vi~~~~~~~~~~~i~~~~~  151 (192)
                      ....+.+|+.+ |-. +-|.|-....+++.. +.+|+++|++++-++.+++.+   +.. ..++.+-. ++...+.....
T Consensus        17 ~~l~~~~~~~~-lD~-t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~-~~~~~~~~~~~   93 (192)
T d1m6ya2          17 EFLKPEDEKII-LDC-TVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR-EADFLLKTLGI   93 (192)
T ss_dssp             HHHCCCTTCEE-EET-TCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG-GHHHHHHHTTC
T ss_pred             HhhCCCCCCEE-EEe-cCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHh-hHHHHHHHcCC
Confidence            44467777754 555 455555555666654 569999999999999988433   322 23444433 55555554322


Q ss_pred             C---Cc--cc-----------ccH----HHHHHHHHhhcCCCe-EEEeeCC
Q 029543          152 C---WV--DF-----------VGI----EYCRSLLLVLLFRPL-KIMENDS  181 (192)
Q Consensus       152 ~---g~--d~-----------~g~----~~~~~~~~~l~~~G~-v~~G~~~  181 (192)
                      +   |+  |.           -+-    ..+..+.+.|+++|+ +++-+.+
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            2   22  31           121    366778889999995 4554443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.72  E-value=0.51  Score=34.49  Aligned_cols=43  Identities=14%  Similarity=0.013  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 029543           80 SPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLK  125 (192)
Q Consensus        80 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  125 (192)
                      +...+.+||=.|  .|.|..+..+++. |++|++++.|++-++.++
T Consensus        53 ~~~~~~~vLD~G--cG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~   95 (292)
T d1xvaa_          53 RQHGCHRVLDVA--CGTGVDSIMLVEE-GFSVTSVDASDKMLKYAL   95 (292)
T ss_dssp             HHTTCCEEEESS--CTTSHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred             hhcCCCEEEEec--CCCcHHHHHHHHc-CCeeeeccCchHHHHHHH
Confidence            345678999998  3457788888875 899999999999888776

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=85.70  E-value=0.69  Score=32.93  Aligned_cols=44  Identities=14%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      ++++++||=.| +|. |..+..+++....+|+++|.|++-++.+++
T Consensus        22 ~~~~~~VLDlG-CG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~   65 (252)
T d1ri5a_          22 TKRGDSVLDLG-CGK-GGDLLKYERAGIGEYYGVDIAEVSINDARV   65 (252)
T ss_dssp             CCTTCEEEEET-CTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCcCEEEEec-ccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHH
Confidence            56899999998 555 666777877644489999999998888874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.40  E-value=0.4  Score=30.56  Aligned_cols=45  Identities=11%  Similarity=-0.032  Sum_probs=35.1

Q ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCee
Q 029543           85 EYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDA  133 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~v  133 (192)
                      ++++|.| .|.+|..+++..+  +.+|++++.++++.+.++ ..|...+
T Consensus         1 kHivI~G-~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~-~~~~~~i   45 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLRELR--GSEVFVLAEDENVRKKVL-RSGANFV   45 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTSC--GGGEEEEESCTTHHHHHH-HTTCEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHc--CCCCEEEEcchHHHHHHH-hcCcccc
Confidence            3689999 8999998877654  556888899999999888 7777543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.30  E-value=0.98  Score=30.52  Aligned_cols=39  Identities=18%  Similarity=0.079  Sum_probs=30.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK--EKVDLLK  125 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~--~~~~~~~  125 (192)
                      +|.|+| +|..|..++..+...|.+|....|..  +..+.+.
T Consensus         2 kI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~   42 (180)
T d1txga2           2 IVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS   42 (180)
T ss_dssp             EEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh
Confidence            588999 89999988888877888999998743  3344443

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.12  E-value=0.65  Score=34.30  Aligned_cols=48  Identities=21%  Similarity=0.143  Sum_probs=36.0

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCCeeee
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCHVVGSA---GSKEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~---~~~~~~~~~~~~~g~~~vi~  135 (192)
                      .++.+.+|..|..++..|+.+|.+.+++.   .++.+.+.++ .+|++.+..
T Consensus        71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~-~~Ga~vi~~  121 (318)
T d1v71a1          71 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATK-GYGGQVIMY  121 (318)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHH-HTTCEEEEE
T ss_pred             eeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHH-HcCCcEEec
Confidence            45555699999999999999999543333   3367788888 999986543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=84.67  E-value=1.8  Score=28.70  Aligned_cols=46  Identities=15%  Similarity=0.176  Sum_probs=32.3

Q ss_pred             CEEEEeCCCchHHH-HHHHHHHHcCC-EEEEEe-CCH--HHHHHHHHhcCCCe
Q 029543           85 EYVYVSAASGAVGQ-LVGQFAKLAGC-HVVGSA-GSK--EKVDLLKNKFGFDD  132 (192)
Q Consensus        85 ~~VlV~Ga~G~iG~-~~~q~a~~~Ga-~Vi~~~-~~~--~~~~~~~~~~g~~~  132 (192)
                      =+|.|.| +|.+|. ++.++.+.... +++++. +++  ....+++ ++|...
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~-~~~i~~   55 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-RMGVTT   55 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-HTTCCE
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh-hcCCcc
Confidence            3689999 999997 56788776655 777765 443  3456666 888754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=84.62  E-value=0.97  Score=33.70  Aligned_cols=97  Identities=18%  Similarity=0.051  Sum_probs=56.7

Q ss_pred             hCCCCCCEEEEeC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCC--e--eeecCCcccHHHHHHhh
Q 029543           79 CSPKKGEYVYVSA-ASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF---GFD--D--AFNYKEEPDLDVALKRM  149 (192)
Q Consensus        79 ~~~~~g~~VlV~G-a~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~~--~--vi~~~~~~~~~~~i~~~  149 (192)
                      ..+.+|++||=.. ++|+.+   +..+ ..|+ +|+.++.++..++.+++.+   |.+  .  ++.   . |..+.++..
T Consensus       140 ~~~~~g~~VLdlf~~~G~~s---l~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~---~-d~~~~l~~~  211 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFS---VAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV---M-DVFDYFKYA  211 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHH---HHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE---S-CHHHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHH---HHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE---c-cHHHHHHHH
Confidence            3567899998553 344444   3333 4688 8999999999888887432   332  1  232   2 344444332


Q ss_pred             cc-C-Cc-----ccc----------c-----HHHHHHHHHhhcCCCeEEEeeCCCC
Q 029543          150 FL-C-WV-----DFV----------G-----IEYCRSLLLVLLFRPLKIMENDSGS  183 (192)
Q Consensus       150 ~~-~-g~-----d~~----------g-----~~~~~~~~~~l~~~G~v~~G~~~~~  183 (192)
                      .. + .+     |.-          .     .+.+..++++|+|+|++++...+..
T Consensus       212 ~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         212 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            11 1 12     311          1     1367788999999997766555443

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.58  E-value=1.6  Score=31.81  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             EEeCCCchHHHHHHHHHHHcCCE-EEEEe--CCHHHHHHHHHhcCCCeeeec
Q 029543           88 YVSAASGAVGQLVGQFAKLAGCH-VVGSA--GSKEKVDLLKNKFGFDDAFNY  136 (192)
Q Consensus        88 lV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~--~~~~~~~~~~~~~g~~~vi~~  136 (192)
                      +|...+|.-|..++..|+.+|.+ ++.+.  .++.|.+.++ .+|++.++..
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~-~~GA~V~~~~  108 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLK-MLGAELVLTP  108 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEEEEEC
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccc-cCCcEEEEec
Confidence            45555999999999999999985 33333  3467888888 9999765433

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.21  E-value=4.4  Score=27.27  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=24.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcC-CEEEEEeC
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAG-CHVVGSAG  116 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~  116 (192)
                      +|.|.| .|-||+.+++.+.... .+++++..
T Consensus         3 KVaING-fGRIGR~v~Ral~~~~dievVaInd   33 (178)
T d1b7go1           3 NVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK   33 (178)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence            589999 9999999999888764 48877653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.12  E-value=1.6  Score=29.66  Aligned_cols=47  Identities=13%  Similarity=0.025  Sum_probs=36.3

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKN  126 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  126 (192)
                      +.....++++||=.|  .|.|..++.+++ .+.+|++++.++.-.+.+++
T Consensus        46 ~~l~~~~~~~VLDiG--cG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~   92 (194)
T d1dusa_          46 ENVVVDKDDDILDLG--CGYGVIGIALAD-EVKSTTMADINRRAIKLAKE   92 (194)
T ss_dssp             HHCCCCTTCEEEEET--CTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHH
T ss_pred             HhCCcCCCCeEEEEe--ecCChhHHHHHh-hccccceeeeccccchhHHH
Confidence            556788899999988  344666666665 46699999999988888874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.09  E-value=0.74  Score=28.76  Aligned_cols=35  Identities=9%  Similarity=-0.050  Sum_probs=26.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCH
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAG---CHVVGSAGSK  118 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~G---a~Vi~~~~~~  118 (192)
                      ..++++|.| +|.+|.=++.....++   .+|..+.+++
T Consensus        19 ~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            357999999 8999997776666554   4688888754

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.87  E-value=1.1  Score=33.42  Aligned_cols=91  Identities=22%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCC--eee-----ecCCcccHHHHHHhhccC-C
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKFGFD--DAF-----NYKEEPDLDVALKRMFLC-W  153 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~--~vi-----~~~~~~~~~~~i~~~~~~-g  153 (192)
                      .-++|||.|  ||-|..+-.++|.... +|..++..++=.+.++ ++-..  ..+     +..-. |-.+.+++.... .
T Consensus       106 ~pk~VLIiG--gG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~-~~~~~~~~~~~dprv~i~i~-Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         106 DPKRVLIIG--GGDGGILREVLKHESVEKVTMCEIDEMVIDVAK-KFLPGMSCGFSHPKLDLFCG-DGFEFLKNHKNEFD  181 (312)
T ss_dssp             SCCEEEEES--CTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHH-HHCTTTSGGGGCTTEEEECS-CHHHHHHHCTTCEE
T ss_pred             CCCeEEEeC--CCchHHHHHHHHcCCcceEEEEcccHHHHHHHH-hhchhhccccCCCCeEEEEc-hHHHHHHhCCCCCC
Confidence            457899999  4445566677777776 8999999999888888 54211  111     11122 455556543222 1


Q ss_pred             c---cc---cc-------HHHHHHHHHhhcCCCeEEE
Q 029543          154 V---DF---VG-------IEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~---d~---~g-------~~~~~~~~~~l~~~G~v~~  177 (192)
                      +   |.   .+       .+.++.+-++|+++|+++.
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence            1   32   22       1256778889999996543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.77  E-value=0.33  Score=32.09  Aligned_cols=41  Identities=15%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE
Q 029543           69 VTAFAGLYEICSPKKGEYVYVSAASGAVGQLVGQFAKLAGCHVV  112 (192)
Q Consensus        69 ~ta~~~l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi  112 (192)
                      .+++..|.  .+...|++|+|+| .|.+|.-++..+...|++++
T Consensus        16 ~~a~d~L~--~~~~~gkrVvVIG-gG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          16 LSYLDVLR--DKAPVGNKVAIIG-CGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             EEHHHHHT--SCCCCCSEEEEEC-CHHHHHHHHHHHTCCSSCGG
T ss_pred             EEHHHHhh--CccccCCceEEEc-CchhHHHHHHHHHHcCCccc
Confidence            44555552  3567899999999 89999999999999998543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=83.58  E-value=0.34  Score=36.09  Aligned_cols=32  Identities=13%  Similarity=-0.014  Sum_probs=27.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSK  118 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  118 (192)
                      .|+|+| +|.-|++++.-+...|.+|++++..+
T Consensus         9 DVlVVG-~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIG-AGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEEC-CSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            389999 89999999888888899999988643

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=83.57  E-value=0.95  Score=33.03  Aligned_cols=88  Identities=18%  Similarity=0.117  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc-----CC--C---eeeecCCcccHHHHHHhhcc
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGC-HVVGSAGSKEKVDLLKNKF-----GF--D---DAFNYKEEPDLDVALKRMFL  151 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~-----g~--~---~vi~~~~~~~~~~~i~~~~~  151 (192)
                      .-++|||.|  ||-|..+..+.+..+. +|.+++.+++=.+.++ ++     ++  +   .++.   . |..+.+++...
T Consensus        75 ~p~~vLiiG--gG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~-~~~~~~~~~~~d~r~~i~~---~-D~~~~l~~~~~  147 (274)
T d1iy9a_          75 NPEHVLVVG--GGDGGVIREILKHPSVKKATLVDIDGKVIEYSK-KFLPSIAGKLDDPRVDVQV---D-DGFMHIAKSEN  147 (274)
T ss_dssp             SCCEEEEES--CTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHH-HHCHHHHTTTTSTTEEEEE---S-CSHHHHHTCCS
T ss_pred             CcceEEecC--CCCcHHHHHHHhcCCcceEEEecCCHHHHHHHH-HhChhhcccccCCCeEEEe---c-hHHHHHhhcCC
Confidence            457899998  4446666777777776 9999999999888887 43     22  1   1221   2 33334443211


Q ss_pred             C-Cc---ccc----------cHHHHHHHHHhhcCCCeEEE
Q 029543          152 C-WV---DFV----------GIEYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       152 ~-g~---d~~----------g~~~~~~~~~~l~~~G~v~~  177 (192)
                      . .+   |..          ..+.++.+-+.|+++|+++.
T Consensus       148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~  187 (274)
T d1iy9a_         148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (274)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence            1 11   321          22467888899999996543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=83.52  E-value=0.29  Score=32.16  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             EEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcC
Q 029543           87 VYVSAASGAVGQLVGQFAKLAGCH-VVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        87 VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~~~~~g  129 (192)
                      |-++| +|.+|...++..+. +.. +.+..|++++.+.+.++.+
T Consensus         2 IgfIG-~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~   43 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYG   43 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTC
T ss_pred             EEEEe-CcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhccc
Confidence            34678 89999988775544 444 4578999999999984444

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.22  E-value=2  Score=31.83  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=35.9

Q ss_pred             HhCCCCCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH---hcCCCeeee
Q 029543           78 ICSPKKGEYVYVSAASGAVGQLVGQFAKLAG--CHVVGSAGSKEKVDLLKN---KFGFDDAFN  135 (192)
Q Consensus        78 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~---~~g~~~vi~  135 (192)
                      ...+++|++||=.- +++=|. +.+++...+  ..+++.+.+++|+..+++   ++|...++.
T Consensus       111 ~l~~~~g~~vlD~C-AapGgK-t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~  171 (313)
T d1ixka_         111 ALDPKPGEIVADMA-AAPGGK-TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVIL  171 (313)
T ss_dssp             HHCCCTTCEEEECC-SSCSHH-HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             cccCCccceeeecc-cchhhh-hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccc
Confidence            45788999886443 333233 334444443  489999999999887752   567765543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=83.19  E-value=1.7  Score=30.85  Aligned_cols=94  Identities=14%  Similarity=-0.014  Sum_probs=55.0

Q ss_pred             HHhCCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCeeeecCCcccHHHHHHhhccC
Q 029543           77 EICSPKKGEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKN---KFGFDDAFNYKEEPDLDVALKRMFLC  152 (192)
Q Consensus        77 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~vi~~~~~~~~~~~i~~~~~~  152 (192)
                      ....+....+||=+|  +|.|..+..+++.. +.++++++. ++-++.+++   +.|...-+..... |+.+    ....
T Consensus        74 ~~~d~~~~~~VLDvG--cG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~-D~~~----~~~~  145 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVG--GGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-DFFE----PLPR  145 (253)
T ss_dssp             HHSCCTTCSEEEEET--CTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-CTTS----CCSS
T ss_pred             hhcCCccCCEEEEeC--CCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccc-cchh----hccc
Confidence            445677788999888  56788999999987 569999996 444555542   3343221211111 2110    1111


Q ss_pred             Ccc---------ccc-H---HHHHHHHHhhcCCCeEEEe
Q 029543          153 WVD---------FVG-I---EYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       153 g~d---------~~g-~---~~~~~~~~~l~~~G~v~~G  178 (192)
                      ++|         ... .   ..++.+.+.|+|+|++++.
T Consensus       146 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         146 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence            221         122 1   3678899999999965443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=1.5  Score=28.62  Aligned_cols=34  Identities=21%  Similarity=0.118  Sum_probs=25.4

Q ss_pred             EEEEeCCCchHHHHHHHHHH-HcC--CEEEEEeCCHH
Q 029543           86 YVYVSAASGAVGQLVGQFAK-LAG--CHVVGSAGSKE  119 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~-~~G--a~Vi~~~~~~~  119 (192)
                      +|.|+|++|.+|..++.+.+ ..+  .++...+..+.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~   38 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV   38 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence            58899988999987776544 434  37888887654

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=2.7  Score=30.70  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=37.0

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhcCCCeeee
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS---KEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~---~~~~~~~~~~~g~~~vi~  135 (192)
                      |..-+|...+|..|..++..|+.+|.+++++...   +.|.+.++ .+|+..++.
T Consensus        53 g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~Ga~v~~~  106 (319)
T d1p5ja_          53 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLK-NEGATCKVV  106 (319)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHH-HTTCEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccc-cceeccccc
Confidence            3334556669999999999999999965544432   46788888 899976543

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.99  E-value=3.7  Score=30.27  Aligned_cols=51  Identities=18%  Similarity=0.089  Sum_probs=35.2

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCC---HHHHHHHHHhcCCCeeee
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCH-VVGSAGS---KEKVDLLKNKFGFDDAFN  135 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~---~~~~~~~~~~~g~~~vi~  135 (192)
                      ..+.++... +|.-|..++.+|+..|.+ ++.+..+   .++...++ .+|++.+..
T Consensus        76 g~~~iv~~S-sGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~~Ga~vi~~  130 (351)
T d1v7ca_          76 GAQAVACAS-TGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSL-VHGARIVQV  130 (351)
T ss_dssp             TCSEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHH-HTTCEEEEE
T ss_pred             CCCeeeeec-cccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhh-cCCCceEee
Confidence            345665555 899999999999999994 4444422   34555567 899976543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=82.98  E-value=3.4  Score=30.96  Aligned_cols=47  Identities=13%  Similarity=0.084  Sum_probs=36.6

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHcCC-EEEEEeCCHHHHHHHHHhcC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFA-KLAGC-HVVGSAGSKEKVDLLKNKFG  129 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga-~Vi~~~~~~~~~~~~~~~~g  129 (192)
                      +..+++.|+| +|..+.+.++.. ..++. +|.+.++++++.+.+.+++.
T Consensus       126 ~da~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~  174 (340)
T d1x7da_         126 PNARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK  174 (340)
T ss_dssp             TTCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh
Confidence            4468899999 999999888744 56788 89999999887766554553

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=82.53  E-value=5.6  Score=27.23  Aligned_cols=88  Identities=13%  Similarity=0.022  Sum_probs=55.4

Q ss_pred             CCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH---hcCCCee--eecCCcccHHHHHHhhccC-Ccc-
Q 029543           84 GEYVYVSAASGAVGQLVGQFAKLA-GCHVVGSAGSKEKVDLLKN---KFGFDDA--FNYKEEPDLDVALKRMFLC-WVD-  155 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~v--i~~~~~~~~~~~i~~~~~~-g~d-  155 (192)
                      +..||=+|  .|.|..++.+|+.. +.++++++.++..++.+.+   +.|.+.+  +..... ++.    +.... .+| 
T Consensus        30 ~PlvLeIG--cG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~-~l~----~~~~~~~~d~  102 (204)
T d2fcaa1          30 NPIHIEVG--TGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDAD-TLT----DVFEPGEVKR  102 (204)
T ss_dssp             CCEEEEEC--CTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGG-GHH----HHCCTTSCCE
T ss_pred             CceEEEEE--ecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchh-hhh----cccCchhhhc
Confidence            44567777  45588889999986 5699999999988777642   4566643  222111 232    22222 222 


Q ss_pred             -------c-----------ccHHHHHHHHHhhcCCCeEEEe
Q 029543          156 -------F-----------VGIEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       156 -------~-----------~g~~~~~~~~~~l~~~G~v~~G  178 (192)
                             .           +-.+.++...+.|+|||.+.+-
T Consensus       103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence                   1           1235788888999999976543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=82.47  E-value=3.5  Score=27.57  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC-C-HHHHHHHHHhcCCCeeeecCCcc-cHHH-------HHHhhccC-C
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC-HVVGSAG-S-KEKVDLLKNKFGFDDAFNYKEEP-DLDV-------ALKRMFLC-W  153 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~-~-~~~~~~~~~~~g~~~vi~~~~~~-~~~~-------~i~~~~~~-g  153 (192)
                      +|.|.| .|-||+++++.+...+- +++++.. + ......+. +++.+......+.. .+.+       ...+...+ .
T Consensus         3 ~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           3 AVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMAL-KKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHH-HTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             EEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHH-hcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            689999 99999999998876654 7666553 3 23445555 66665432221110 0100       00111112 2


Q ss_pred             c--ccccH-HHHHHHHHhhcCCCeEEE
Q 029543          154 V--DFVGI-EYCRSLLLVLLFRPLKIM  177 (192)
Q Consensus       154 ~--d~~g~-~~~~~~~~~l~~~G~v~~  177 (192)
                      +  ||+|. ...+.+-..+..|-.+++
T Consensus        81 vViEcTG~f~~~~~~~~hl~~G~K~vi  107 (171)
T d1cf2o1          81 IVIDCTPEGIGAKNLKMYKEKGIKAIF  107 (171)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEE
Confidence            2  89994 455666667766545443

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=82.45  E-value=2.1  Score=31.19  Aligned_cols=50  Identities=18%  Similarity=0.103  Sum_probs=36.3

Q ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCCeee
Q 029543           83 KGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAG---SKEKVDLLKNKFGFDDAF  134 (192)
Q Consensus        83 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~vi  134 (192)
                      ....|+... +|..|..++..|+.+|.+++++..   ++++.+.++ .+|+..+.
T Consensus        63 ~~~~vv~aS-sGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~-~~Ga~vi~  115 (310)
T d1ve5a1          63 NPKGLLAVS-SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACAR-AYGAEVVD  115 (310)
T ss_dssp             SCCCEEEEC-SSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHH-HTTCEEEC
T ss_pred             ccCCccccC-chhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHh-hhccccce
Confidence            344455555 999999999999999996544442   356788888 99997654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=82.02  E-value=1.1  Score=30.62  Aligned_cols=84  Identities=14%  Similarity=0.021  Sum_probs=50.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCCeeeecCCcccHHHHHHhhccCCc------
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDVALKRMFLCWV------  154 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~i~~~~~~g~------  154 (192)
                      +.++++||=.| +| .|.++..+     .++++++.|++-++.++ +-+... +...-+ ++.     ...+.+      
T Consensus        34 ~~~~~~vLDiG-cG-~G~~~~~~-----~~~~giD~s~~~~~~a~-~~~~~~-~~~d~~-~l~-----~~~~~fD~I~~~   98 (208)
T d1vlma_          34 LLPEGRGVEIG-VG-TGRFAVPL-----KIKIGVEPSERMAEIAR-KRGVFV-LKGTAE-NLP-----LKDESFDFALMV   98 (208)
T ss_dssp             HCCSSCEEEET-CT-TSTTHHHH-----TCCEEEESCHHHHHHHH-HTTCEE-EECBTT-BCC-----SCTTCEEEEEEE
T ss_pred             hCCCCeEEEEC-CC-Cccccccc-----ceEEEEeCChhhccccc-cccccc-cccccc-ccc-----cccccccccccc
Confidence            35677899998 44 46555444     35789999999999998 655432 222111 110     001111      


Q ss_pred             ---cccc--HHHHHHHHHhhcCCCeEEEee
Q 029543          155 ---DFVG--IEYCRSLLLVLLFRPLKIMEN  179 (192)
Q Consensus       155 ---d~~g--~~~~~~~~~~l~~~G~v~~G~  179 (192)
                         +.+.  ...++...+.|+|+|.+++..
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEe
Confidence               3333  247889999999999655443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.94  E-value=2.9  Score=28.13  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=29.8

Q ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Q 029543           82 KKGEYVYVSAASGAVGQLVGQFAKLAGCHVVGSAGS  117 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~  117 (192)
                      -.|++|+|.|-+.-+|.=++.+....||.|..+..+
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            468999999988888998887777789998877643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.78  E-value=0.59  Score=34.40  Aligned_cols=34  Identities=15%  Similarity=0.026  Sum_probs=26.9

Q ss_pred             CCEEEEeCCCchHHHHHHHHHH-H-cCCEEEEEeCCH
Q 029543           84 GEYVYVSAASGAVGQLVGQFAK-L-AGCHVVGSAGSK  118 (192)
Q Consensus        84 g~~VlV~Ga~G~iG~~~~q~a~-~-~Ga~Vi~~~~~~  118 (192)
                      ...|+|+| +|+.|+.++..++ . .|.+|.++++++
T Consensus        50 ~~~~~~~g-~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVG-AGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEEC-CSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            44599999 8999998886554 3 488999998764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.54  E-value=1.4  Score=30.58  Aligned_cols=91  Identities=11%  Similarity=0.091  Sum_probs=55.8

Q ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHhc---CCCeeeecCCcccHHHHHHhhccCCc
Q 029543           81 PKKGEYVYVSAASGAVGQLVGQFAKL---AGCHVVGSAGSKEKVDLLKNKF---GFDDAFNYKEEPDLDVALKRMFLCWV  154 (192)
Q Consensus        81 ~~~g~~VlV~Ga~G~iG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~~~---g~~~vi~~~~~~~~~~~i~~~~~~g~  154 (192)
                      ++++.+||=.| + |.|..+..+++.   .+++|+++|.|++-++.+++++   +....+..... +..    +...+..
T Consensus        37 ~~~~~~vLDlG-C-GtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~-d~~----~~~~~~~  109 (225)
T d1im8a_          37 VTADSNVYDLG-C-SRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-DIR----HVEIKNA  109 (225)
T ss_dssp             CCTTCEEEEES-C-TTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS-CTT----TCCCCSE
T ss_pred             cCCCCEEEEec-c-chhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc-hhh----ccccccc
Confidence            67899999998 3 446677777774   4779999999999888887433   32222211111 111    1110111


Q ss_pred             ---------cccc----HHHHHHHHHhhcCCCeEEEe
Q 029543          155 ---------DFVG----IEYCRSLLLVLLFRPLKIME  178 (192)
Q Consensus       155 ---------d~~g----~~~~~~~~~~l~~~G~v~~G  178 (192)
                               ....    ...++...+.|+|+|.+++.
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence                     1111    24789999999999965543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=81.23  E-value=1.2  Score=28.95  Aligned_cols=34  Identities=26%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHH
Q 029543           86 YVYVSAASGAVGQLVGQFAKLAGC--HVVGSAGSKEK  120 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~  120 (192)
                      +|.|+| +|.+|..++..+...+.  +++.+|+++++
T Consensus         3 KI~IIG-aG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           3 KVAIIG-AGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             eEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            588999 69999999888877765  79999988765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.42  E-value=1.5  Score=28.15  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             CCCCEEEEeCCCchHHHHHH-HHH---HHcCCEEEEEeCCHH
Q 029543           82 KKGEYVYVSAASGAVGQLVG-QFA---KLAGCHVVGSAGSKE  119 (192)
Q Consensus        82 ~~g~~VlV~Ga~G~iG~~~~-q~a---~~~Ga~Vi~~~~~~~  119 (192)
                      +..++++|.| +|.+|.=++ .++   +..|.+|+.+.+++.
T Consensus        35 ~~~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          35 REVKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             HHCSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             hcCCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            3578999999 899996433 333   457899999887543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.06  E-value=0.86  Score=33.77  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=23.9

Q ss_pred             EEEEeCCCchHHHHHH-HHHH---HcCCEEEEEeCC
Q 029543           86 YVYVSAASGAVGQLVG-QFAK---LAGCHVVGSAGS  117 (192)
Q Consensus        86 ~VlV~Ga~G~iG~~~~-q~a~---~~Ga~Vi~~~~~  117 (192)
                      .|+|+| +|+.|+.++ ++|+   ..|++|++++..
T Consensus        23 DVlIIG-~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          23 DILIIG-GGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            389999 899998765 4544   368999999854