Citrus Sinensis ID: 029576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAAAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccEEEEcccHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEcccccEEccccccccccHHHHHHHHHHHHHHHHcccHcHccccccccccccccccccccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mllgkrprppmkrttslseisfdldgggddsssaaashqqknptaaltkhpgsggggvddvdQRFLStvssprnnnnnnnrhsadfletphflrtcglckrrlvpgrdIYMYRLFLLMCFcrgdsafcSLECRQQQMnqderkqkctshghasasASASAAKKQAAAAASSTAarsqvsskgerdtvaaav
Flexible Loop (DISEMBL)
mllgkrprppmkrttslsEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVssprnnnnnnnrhsadfletphFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTaarsqvsskgerdtvaaav
Low Complexity Region (SEG)
MLLGKRPRPPMKRTTSLSEISFDLdgggddsssaaasHQQKNPTAALTKHPgsggggvddvdQRFLSTVSSPRnnnnnnnRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHasasasasaakkqaaaaasstaarsqvsskGERDTVAAAV
Disordered region (IsUnstruct)
*************************************************************************************FLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLEC***********************************************************
Disordered Region (DISOPRED)
**********************************************************DDV**************************ETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMN**********************************************DTVAAAV
Disordered Region (DISEMBL)
**************TSLSEISFDLD*****************************GGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ*********************************************************
Disordered Region (DISPRO)
*************************************************************D*R********************DFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQK**********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
388505518	148	unknown [Lotus japonicus]	0.753	0.972	0.515	8e-37
255545646	172	conserved hypothetical protein [Ricinus	0.774	0.860	0.554	1e-36
224082162	148	predicted protein [Populus trichocarpa]	0.769	0.993	0.497	7e-36
359492831	208	PREDICTED: uncharacterized protein LOC10	0.806	0.740	0.505	3e-35
224066919	140	predicted protein [Populus trichocarpa]	0.727	0.992	0.502	3e-34
341833958	161	hypothetical protein [Pyrus x bretschnei	0.743	0.881	0.526	3e-32
388501536	154	unknown [Lotus japonicus]	0.801	0.993	0.476	3e-32
351720923	150	uncharacterized protein LOC100527853 [Gl	0.780	0.993	0.462	2e-31
358349491	156	hypothetical protein MTR_145s0001 [Medic	0.659	0.807	0.509	3e-31
297842579	162	hypothetical protein ARALYDRAFT_476964 [	0.780	0.919	0.5	6e-31

>gi|388505518|gb|AFK40825.1| unknown [Lotus japonicus]

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 110/190 (57%), Gaps = 46/190 (24%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           M+LGKRPRPPMKRTTS+SEI+FDL+   +D  +A   H               G  G + 
Sbjct: 1   MMLGKRPRPPMKRTTSMSEITFDLNTAPEDGGAAGNRH--------------GGAAGFNG 46

Query: 61  VDQ-RFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMC 119
            DQ R L+TVS PRN+      HS DF +TP FLR C LCKRRL PGRDIYMY       
Sbjct: 47  SDQSRILATVS-PRNHRT----HSVDFAQTPDFLRCCFLCKRRLAPGRDIYMY------- 94

Query: 120 FCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVS 179
             RGDSAFCSLECRQQQMNQDERK KC             A+KKQ  A A S       S
Sbjct: 95  --RGDSAFCSLECRQQQMNQDERKDKC-----------CVASKKQVVATAGSQV----TS 137

Query: 180 SKGERDTVAA 189
           +KGE  TV A
Sbjct: 138 TKGE--TVVA 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545646|ref|XP_002513883.1| conserved hypothetical protein [Ricinus communis] gi|223546969|gb|EEF48466.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 115/184 (62%), Gaps = 36/184 (19%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTSLSEI+FDLD  G   S+  A        A         GGG   
Sbjct: 1   MLLGKRPRPPMKRTTSLSEITFDLDTNGSCESAQQA--------AGFGGDGTGTGGGQQQ 52

Query: 61  VDQRFLSTVS-SPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMC 119
           +DQRFL+  + SPRN+     R SADFLET HFLR+C LC RRLV GRDIYMYR      
Sbjct: 53  LDQRFLAAATISPRNHR----RASADFLETAHFLRSCSLCHRRLVTGRDIYMYR------ 102

Query: 120 FCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVS 179
              GDSAFCSLECRQQQMNQDERK+KC+            A+KK+     SST A + VS
Sbjct: 103 ---GDSAFCSLECRQQQMNQDERKEKCS-----------LASKKE---VTSSTVAGADVS 145

Query: 180 SKGE 183
           +KGE
Sbjct: 146 AKGE 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082162|ref|XP_002306588.1| predicted protein [Populus trichocarpa] gi|118489780|gb|ABK96690.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856037|gb|EEE93584.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 119/189 (62%), Gaps = 42/189 (22%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPR PMKRTTSL+EI FDL+    +++   + H QK            G GG+  
Sbjct: 1   MLLGKRPRNPMKRTTSLTEIKFDLNTASSEAA-PPSDHPQKQ----------VGYGGM-- 47

Query: 61  VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCF 120
           +DQR  +   SPR ++    R SADFLETP+FLR C LCKRRL+PGRDIYMY        
Sbjct: 48  IDQRSSAATGSPRTSHR---RASADFLETPNFLRACSLCKRRLIPGRDIYMY-------- 96

Query: 121 CRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSS 180
            +GDSAFCS ECRQQQM+ DERK+KC+            A+KK+A ++ ++T    +VS+
Sbjct: 97  -KGDSAFCSQECRQQQMSLDERKEKCS-----------LASKKEAVSSTTAT----EVSA 140

Query: 181 KGERDTVAA 189
           KGE  TVAA
Sbjct: 141 KGE--TVAA 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492831|ref|XP_002285807.2| PREDICTED: uncharacterized protein LOC100252409 [Vitis vinifera]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 104/170 (61%), Gaps = 16/170 (9%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTS++E + D +      S +    + +  +      P     GVD 
Sbjct: 52  MLLGKRPRPPMKRTTSMTEFTLDPNSVQQPPSDSQNPFKDRPKSVGFGGDPYRQPSGVDG 111

Query: 61  --VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLM 118
              D RFLS VS PRN      R+SADF++  HFLR C LCKRRLV GRDIYMYR     
Sbjct: 112 YGFDHRFLSAVS-PRNPR----RYSADFVDNSHFLRACCLCKRRLVSGRDIYMYR----- 161

Query: 119 CFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAA 168
               GDSAFCSLECRQQQMNQDERK+KC+      A+AS + ++ +  AA
Sbjct: 162 ----GDSAFCSLECRQQQMNQDERKEKCSLASKKEATASTAGSEGETVAA 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066919|ref|XP_002302279.1| predicted protein [Populus trichocarpa] gi|222844005|gb|EEE81552.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 109/179 (60%), Gaps = 40/179 (22%)

Query: 11  MKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVS 70
           MKRTTS SEI+FDL+    +++   + H QK           +G GG+  +DQRFLS   
Sbjct: 1   MKRTTSFSEITFDLNTATSEAAPPPSDHHQKQ----------AGYGGL--IDQRFLSDAG 48

Query: 71  SPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130
           SPR       R SADFLET HFLR C LCKRRL+PGRDIYMY         RGDSAFCSL
Sbjct: 49  SPRTTYR---RASADFLETAHFLRACSLCKRRLIPGRDIYMY---------RGDSAFCSL 96

Query: 131 ECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAA 189
           ECRQQQM+ DERK+KC+            A+KK++     ST   ++VS+KGE  TVAA
Sbjct: 97  ECRQQQMSLDERKEKCS-----------LASKKESI----STTTATEVSAKGE-STVAA 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341833958|gb|AEK94314.1| hypothetical protein [Pyrus x bretschneideri]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 104/167 (62%), Gaps = 25/167 (14%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQ----KNPTAAL------TKH 50
           M LGKRPRPPMKRTTS+SEI+FD      ++ S  A H Q     NP   L         
Sbjct: 1   MSLGKRPRPPMKRTTSMSEITFD-----PNTISTEAPHSQPSDPNNPYQPLALWGGGGSG 55

Query: 51  PGSGGGGVDDVDQRFLSTVSSPRN-NNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDI 109
            G  GGG+D +DQR +  + SP + +  N  R+SADF ET HFL+ CGLCKRRL+PGRDI
Sbjct: 56  GGGRGGGLDGLDQRLMMKLPSPSSASPRNQKRNSADFGETAHFLKACGLCKRRLIPGRDI 115

Query: 110 YMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASA 156
           YMY         RGD+AFCSLECRQQQ+N DERK KC+S      SA
Sbjct: 116 YMY---------RGDTAFCSLECRQQQINLDERKDKCSSTAGHQVSA 153

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501536|gb|AFK38834.1| unknown [Lotus japonicus]

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 107/189 (56%), Gaps = 36/189 (19%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTS+SEI+ DL+     ++   +                        
Sbjct: 1   MLLGKRPRPPMKRTTSMSEITLDLNTTTVVTTDVRSGGGGSGGFNN-------------G 47

Query: 61  VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCF 120
           +DQ  +     PRN+     RHS+DF  TP FLR+C LC+RRLVPGRDIYMY        
Sbjct: 48  LDQTKVLAPVPPRNHR----RHSSDFTGTPDFLRSCCLCRRRLVPGRDIYMY-------- 95

Query: 121 CRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSS 180
            RGDSAFCSLECRQQQM QDERK+K            ASA K+  AA ASS +  +  +S
Sbjct: 96  -RGDSAFCSLECRQQQMKQDERKEKL---------LVASAKKQVVAAPASSGSQVTNTAS 145

Query: 181 KGERDTVAA 189
           KGE  TVAA
Sbjct: 146 KGE-TTVAA 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720923|ref|NP_001238472.1| uncharacterized protein LOC100527853 [Glycine max] gi|255633378|gb|ACU17046.1| unknown [Glycine max]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 39/188 (20%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTS+SE++ DL+     +++ AA++QQ++         G G G   D
Sbjct: 1   MLLGKRPRPPMKRTTSMSEMTLDLN----TAAADAAANQQRS---------GVGPGAAAD 47

Query: 61  VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCF 120
              R L+T    R       RHS+DF +TP FLR C LCKR LVPG DIYMY        
Sbjct: 48  QTTRMLATPKILR-------RHSSDFGDTPPFLRACSLCKRSLVPGHDIYMY-------- 92

Query: 121 CRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSS 180
            RGD+AFCSLECRQQQMNQDERK+K          A+  +  + A A A          +
Sbjct: 93  -RGDNAFCSLECRQQQMNQDERKEKFVMASKKKVVATPPSGSQVAVATA----------T 141

Query: 181 KGERDTVA 188
           KGE   VA
Sbjct: 142 KGETTVVA 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358349491|ref|XP_003638769.1| hypothetical protein MTR_145s0001 [Medicago truncatula] gi|355504704|gb|AES85907.1| hypothetical protein MTR_145s0001 [Medicago truncatula]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 94/155 (60%), Gaps = 29/155 (18%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKH-PGSG----- 54
           M+LGKRPRPPMKRTTS+SEI+FDL+       +        N      +H PG G     
Sbjct: 1   MMLGKRPRPPMKRTTSMSEITFDLN-------TVTTEEDPNNNNNLFNRHGPGVGPYGPY 53

Query: 55  ---GGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYM 111
                G++  DQ  + ++ SPRN      R+SAD    P FLR+C LCKRRLVPGRDIYM
Sbjct: 54  PPTSPGINGSDQSRVMSMVSPRNLR----RNSADMTHNPDFLRSCFLCKRRLVPGRDIYM 109

Query: 112 YRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKC 146
           Y         +GDSAFCSLECRQQQMNQDE+K KC
Sbjct: 110 Y---------KGDSAFCSLECRQQQMNQDEKKDKC 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842579|ref|XP_002889171.1| hypothetical protein ARALYDRAFT_476964 [Arabidopsis lyrata subsp. lyrata] gi|297335012|gb|EFH65430.1| hypothetical protein ARALYDRAFT_476964 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 104/182 (57%), Gaps = 33/182 (18%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGG----G 56
           MLLGKR RPP+ RTTSLSEI FDL+   +   S      Q+NPT  +    GS G     
Sbjct: 1   MLLGKRQRPPINRTTSLSEIKFDLNLPSESEPS-----NQQNPT--VVSPYGSNGQAVTA 53

Query: 57  GVDD----VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMY 112
            VD     +DQR LS VSS      N  RHS DF +  HFLR+C LC+R LVPGRDIYMY
Sbjct: 54  AVDQNRAFLDQRLLSMVSS----RGNLRRHSGDFSDAGHFLRSCSLCERLLVPGRDIYMY 109

Query: 113 RLFLLMCFCRGDSAFCSLECRQQQMNQDERKQKCTSHGHA-----SASASASAAKKQAAA 167
                    RGD AFCS ECRQ+QM QDERK+K  S   A     +A A A   K +AAA
Sbjct: 110 ---------RGDKAFCSSECRQEQMAQDERKEKGKSAPPAKEPAVTAPARAKPGKGRAAA 160

Query: 168 AA 169
           A 
Sbjct: 161 AV 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2030611	147	AT1G22160 "AT1G22160" [Arabido	0.356	0.462	0.578	2.1e-25
TAIR|locus:2029421	162	AT1G78020 [Arabidopsis thalian	0.664	0.783	0.496	3.6e-25
TAIR|locus:504955245	126	AT4G39795 "AT4G39795" [Arabido	0.361	0.547	0.481	5e-19
TAIR|locus:2177739	113	AT5G65040 "AT5G65040" [Arabido	0.235	0.398	0.537	6.2e-14
TAIR|locus:2171047	177	AT5G47060 "AT5G47060" [Arabido	0.387	0.418	0.447	5e-12
TAIR|locus:2129331	159	AT4G17670 "AT4G17670" [Arabido	0.361	0.433	0.437	3.5e-11
TAIR|locus:2042416	93	AT2G44670 "AT2G44670" [Arabido	0.256	0.526	0.465	1.8e-09
TAIR|locus:2155174	150	AT5G49120 "AT5G49120" [Arabido	0.246	0.313	0.466	9.7e-09
TAIR|locus:505006184	126	AT1G53885 "AT1G53885" [Arabido	0.230	0.349	0.471	1.1e-07
TAIR|locus:4515102678	126	AT1G53903 [Arabidopsis thalian	0.230	0.349	0.471	1.1e-07

TAIR|locus:2030611 AT1G22160 "AT1G22160" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 48/83 (57%), Positives = 54/83 (65%)

Query:    63 QRFLSTVSSPRXXXXXXXRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCR 122
             QR L+ VS PR       RHS+D+ E   FLR+C LCKR LV GRDIYMYR         
Sbjct:    55 QRLLAMVS-PRGTQR---RHSSDYSED--FLRSCSLCKRLLVHGRDIYMYR--------- 99

Query:   123 GDSAFCSLECRQQQMNQDERKQK 145
             GD AFCSLECRQQQ+  DERK+K
Sbjct:   100 GDRAFCSLECRQQQITVDERKEK 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2029421 AT1G78020 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 75/151 (49%), Positives = 83/151 (54%)

Query:     1 MLLGKRPRPPMKRTTSLSEISFDLXXXXXXXXXXXXXHQQKNPTAALTKHPXXXXXXXXX 60
             MLLGKR RPP+ RTTSLSEI FDL             +QQK PT A              
Sbjct:     1 MLLGKRQRPPINRTTSLSEIKFDLNLPSESEPS----NQQK-PTVASPYGSNGQAVTAAV 55

Query:    61 XX------QRFLSTVSSPRXXXXXXXRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRL 114
                     QR LS V+ PR       RHS DF +  HFLR+C LC+R LVPGRDIYMYR 
Sbjct:    56 DQNRGFLDQRLLSMVT-PRGNLR---RHSGDFSDAGHFLRSCALCERLLVPGRDIYMYR- 110

Query:   115 FLLMCFCRGDSAFCSLECRQQQMNQDERKQK 145
                     GD AFCS ECRQ+QM QDERK+K
Sbjct:   111 --------GDKAFCSSECRQEQMAQDERKEK 133

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:504955245 AT4G39795 "AT4G39795" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
 Identities = 40/83 (48%), Positives = 46/83 (55%)

Query:    63 QRFLSTVSSPRXXXXXXXRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCR 122
             QRFLS V+  R       R S        FL  CG CKR L PGRDIYMY+         
Sbjct:    49 QRFLSPVNHQRNERKYGGRSSPS-----SFLVNCGFCKRGLAPGRDIYMYK--------- 94

Query:   123 GDSAFCSLECRQQQMNQDERKQK 145
             GD+AFCS+ECR+QQM  DE K +
Sbjct:    95 GDAAFCSIECREQQMEHDEGKTR 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177739 AT5G65040 "AT5G65040" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
 Identities = 29/54 (53%), Positives = 36/54 (66%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQK 145
             FL+TC LC R L   RDIYMYR         G++AFCSLECR++Q+  DE+K K
Sbjct:    57 FLKTCSLCNRSLCHHRDIYMYR---------GNNAFCSLECREKQIKLDEKKAK 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171047 AT5G47060 "AT5G47060" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 38/85 (44%), Positives = 49/85 (57%)

Query:    68 TVSSPRXXXXXXXRHSADF-LETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSA 126
             +VSSPR        H   F ++ PHFL +C LCK+ L   RDIYMYR         GD+ 
Sbjct:    73 SVSSPRSVVSGRF-HDFRFDIQQPHFLDSCFLCKKPLGDNRDIYMYR---------GDTP 122

Query:   127 FCSLECRQQQMNQDERKQKCTSHGH 151
             FCS ECRQ+Q+ +DE K+K  +  H
Sbjct:   123 FCSEECRQEQIERDEAKEKKQNLSH 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129331 AT4G17670 "AT4G17670" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 35/80 (43%), Positives = 46/80 (57%)

Query:    68 TVSSPRXXXXXXXRHSADFLE--TPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS 125
             +VSSPR       R    +     PHFL +C LCK+RL   RDI+MYR         GD+
Sbjct:    50 SVSSPRSGKFHDFRFDNSYYGYGQPHFLDSCFLCKKRLGDNRDIFMYR---------GDT 100

Query:   126 AFCSLECRQQQMNQDERKQK 145
              FCS ECR++Q+ +DE K+K
Sbjct:   101 PFCSEECREEQIERDEAKEK 120

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2042416 AT2G44670 "AT2G44670" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query:    88 ETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQK 145
             E PHFL +C LC++ L    DI+MYR         GD AFCS ECR++Q+  DE K++
Sbjct:    12 EEPHFLESCSLCRKHLGLNSDIFMYR---------GDKAFCSNECREEQIESDEAKER 60

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155174 AT5G49120 "AT5G49120" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDE----RKQKCT 147
             FL  C LC+R+L+P +DIYMY+         GD AFCS+ECR +QM  DE    R++ C+
Sbjct:    68 FLEHCFLCRRKLLPAKDIYMYK---------GDRAFCSVECRSKQMIMDEEESLRREYCS 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006184 AT1G53885 "AT1G53885" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQ 144
             FL+TC LC ++L   +D+YMYR         GD  FCS ECR+ QM  D+RK+
Sbjct:    42 FLKTCHLCNKQLHQDKDVYMYR---------GDLGFCSRECRESQMLIDDRKE 85

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102678 AT1G53903 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQ 144
             FL+TC LC ++L   +D+YMYR         GD  FCS ECR+ QM  D+RK+
Sbjct:    42 FLKTCHLCNKQLHQDKDVYMYR---------GDLGFCSRECRESQMLIDDRKE 85

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V4971 hypothetical protein (148 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
pfam04570	59	pfam04570, DUF581, Protein of unknown function (DU	5e-23

>gnl|CDD|218153 pfam04570, DUF581, Protein of unknown function (DUF581)

 Score = 86.6 bits (215), Expect = 5e-23
 Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 9/66 (13%)

Query: 78  NNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQM 137
            +         T HFL +C LCK++L PG+DIYMY         RG+ AFCS ECRQQQM
Sbjct: 2   PSAAGDGGGSPTGHFLSSCFLCKKKLGPGKDIYMY---------RGEKAFCSEECRQQQM 52

Query: 138 NQDERK 143
             DE K
Sbjct: 53  EMDEAK 58

Family of uncharacterized proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	99.93
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	94.94
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	93.17
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	91.36
COG4068	64	Uncharacterized protein containing a Zn-ribbon [Fu	90.39
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	87.73
PRK00418	62	DNA gyrase inhibitor; Reviewed	80.27

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=99.93  E-value=2.7e-26  Score=161.96  Aligned_cols=53  Identities=57%  Similarity=1.049  Sum_probs=48.9

Q ss_pred             CCCCCCchhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHHHHHHHHHh
Q 029576           83 SADFLETPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQ  144 (191)
Q Consensus        83 s~~~~e~~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~qm~~DE~~E  144 (191)
                      .....++.+||++|++|||+|.+++||||||         ||+||||.|||++||++||++|
T Consensus         6 ~~~~~~~~~FL~~C~~C~k~L~~~~DiymYr---------Gd~aFCS~ECR~~qi~~de~~E   58 (58)
T PF04570_consen    6 DGSPFPSEHFLSFCYLCKKKLDPGKDIYMYR---------GDKAFCSEECRSQQILMDEEKE   58 (58)
T ss_pred             cCCCCCcHHHHHHHHccCCCCCCCCCeeeec---------cccccccHHHHHHHHHHHHhcC
Confidence            3444578899999999999999999999999         9999999999999999999876

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=94.94  E-value=0.014  Score=39.40  Aligned_cols=31  Identities=32%  Similarity=0.746  Sum_probs=25.8

Q ss_pred             hHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHH
Q 029576           91 HFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQ  136 (191)
Q Consensus        91 ~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~q  136 (191)
                      .|+.+|-.|-|.+....               .+..|||++||.+.
T Consensus         4 ~F~~yC~~Cdk~~~~~~---------------~~~lYCSe~Cr~~D   34 (43)
T PF12855_consen    4 AFNDYCIVCDKQIDPPD---------------DGSLYCSEECRLKD   34 (43)
T ss_pred             hhhhHHHHhhccccCCC---------------CCccccCHHHHhHh
Confidence            69999999999995533               47889999999764

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=93.17  E-value=0.11  Score=37.23  Aligned_cols=30  Identities=27%  Similarity=0.799  Sum_probs=23.0

Q ss_pred             hccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHHHHHHH
Q 029576           94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDE  141 (191)
Q Consensus        94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~qm~~DE  141 (191)
                      +.|-.|.+.+.                  -|..|||.+||+.....-+
T Consensus         4 kHC~~CG~~Ip------------------~~~~fCS~~C~~~~~k~qk   33 (59)
T PF09889_consen    4 KHCPVCGKPIP------------------PDESFCSPKCREEYRKRQK   33 (59)
T ss_pred             CcCCcCCCcCC------------------cchhhhCHHHHHHHHHHHH
Confidence            45999999995                  2689999999987654433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.36  E-value=0.15  Score=32.13  Aligned_cols=34  Identities=26%  Similarity=0.562  Sum_probs=21.2

Q ss_pred             hccccCcCCCCCCCc--eEEEecchhhhhccCCccccChHHHHH
Q 029576           94 RTCGLCKRRLVPGRD--IYMYRLFLLMCFCRGDSAFCSLECRQQ  135 (191)
Q Consensus        94 ~~C~lCkK~L~~gkD--IYMYR~~l~~~~~~GekAFCS~ECR~~  135 (191)
                      ..|..|++.+....+  +..|.        +-.+-|||..|+..
T Consensus         7 ~~C~~C~~~~~~~~~~~~~~~~--------g~~~~FCS~~C~~~   42 (43)
T PF06467_consen    7 KTCSYCKKYIPNKPTMIEVQYD--------GKMKQFCSQSCLSS   42 (43)
T ss_dssp             EE-TTT--EEECCC----EE-T--------TTTSCCSSHHHHHH
T ss_pred             CcCcccCCcccCCCcccccccc--------CcccChhCHHHHhh
Confidence            569999999955555  56666        24678999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]

Probab=90.39  E-value=0.24  Score=36.41  Aligned_cols=32  Identities=38%  Similarity=0.856  Sum_probs=24.4

Q ss_pred             hccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHHHHHHHHHhh
Q 029576           94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERKQK  145 (191)
Q Consensus        94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~qm~~DE~~Ek  145 (191)
                      +.|--|.+.+.+                  |.-|||+||+  +|+..|++-+
T Consensus         9 ~HC~VCg~aIp~------------------de~~CSe~C~--eil~ker~R~   40 (64)
T COG4068           9 RHCVVCGKAIPP------------------DEQVCSEECG--EILNKERKRQ   40 (64)
T ss_pred             ccccccCCcCCC------------------ccchHHHHHH--HHHHHHHHHH
Confidence            349999999964                  4569999997  5777777644

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=87.73  E-value=0.51  Score=34.93  Aligned_cols=32  Identities=38%  Similarity=0.988  Sum_probs=27.3

Q ss_pred             hccccCcCCCCCCCceEEEecchhhhhccCCcc---ccChHHHH
Q 029576           94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSA---FCSLECRQ  134 (191)
Q Consensus        94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekA---FCS~ECR~  134 (191)
                      ..|+.|.+.|.||.-|+--|         .|..   |||..|+.
T Consensus         4 ~~CsFcG~~I~PGtG~m~Vr---------~Dg~v~~FcssKc~k   38 (66)
T COG2075           4 RVCSFCGKKIEPGTGIMYVR---------NDGKVLRFCSSKCEK   38 (66)
T ss_pred             eEecCcCCccCCCceEEEEe---------cCCeEEEEechhHHH
Confidence            46999999999999887667         6653   99999987

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=80.27  E-value=1  Score=32.74  Aligned_cols=36  Identities=25%  Similarity=0.562  Sum_probs=23.8

Q ss_pred             hhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHHHHHHHHH
Q 029576           93 LRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDERK  143 (191)
Q Consensus        93 L~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~qm~~DE~~  143 (191)
                      ...|-.|+|... +..-.-||            +|||..|+.  |.+-+..
T Consensus         6 ~v~CP~C~k~~~-w~~~~~~r------------PFCS~RCk~--IDLg~W~   41 (62)
T PRK00418          6 TVNCPTCGKPVE-WGEISPFR------------PFCSKRCQL--IDLGEWA   41 (62)
T ss_pred             cccCCCCCCccc-ccCCCCcC------------CcccHHHHh--hhHHHHH
Confidence            456999999873 22223344            899999974  5555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	86.98
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	83.15

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=86.98  E-value=0.39  Score=34.19  Aligned_cols=34  Identities=35%  Similarity=0.712  Sum_probs=28.6

Q ss_pred             HhhccccCcCCCCCCCceEEEecchhhhhccCC-ccccChHHHH
Q 029576           92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGD-SAFCSLECRQ  134 (191)
Q Consensus        92 FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Ge-kAFCS~ECR~  134 (191)
                      +-..|..|||.|..|+.-|-..         |+ .-|||..|-.
T Consensus        19 ~~v~C~~CKk~lqKGQtAyqrk---------Gs~~LFCS~~CL~   53 (62)
T 2das_A           19 AKITCANCKKPLQKGQTAYQRK---------GSAHLFCSTTCLS   53 (62)
T ss_dssp             SSCBCTTTCCBCCTTSCCEECT---------TCCCEESSHHHHH
T ss_pred             cccChhhccchhhcCceeeeec---------CchhheechHHHc
Confidence            4567999999999999988888         54 5799999954

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=83.15  E-value=0.26  Score=33.06  Aligned_cols=30  Identities=30%  Similarity=0.840  Sum_probs=23.5

Q ss_pred             hhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHH
Q 029576           93 LRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQ  135 (191)
Q Consensus        93 L~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~  135 (191)
                      +..|-.|.+.|.+..    ++         ..+-|||..||..
T Consensus        18 ~~~C~~CG~~i~~~~----~~---------r~krFCS~sCR~~   47 (49)
T 2l8e_A           18 LLKCEYCGKYAPAEQ----FR---------GSKRFCSMTCAKR   47 (49)
T ss_dssp             EEECTTTCCEEEGGG----CT---------TTSSSCSHHHHHH
T ss_pred             CCcChhccCcccccc----CC---------CCCccCCHHHHhh
Confidence            457999999986543    25         6789999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	84.78
d2dasa1	49	Zinc finger MYM-type protein 5 {Human (Homo sapien	84.36

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.78  E-value=0.27  Score=29.67  Aligned_cols=26  Identities=50%  Similarity=1.072  Sum_probs=22.0

Q ss_pred             ccccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576           95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL  130 (191)
Q Consensus        95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~  130 (191)
                      .|..|+.+|.|| |.|-|-         --+-||-.
T Consensus         1 tC~tC~n~LVPG-DRFHyv---------NG~lfCE~   26 (33)
T d1rutx4           1 TCSTCRNRLVPG-DRFHYI---------NGSLFCEH   26 (33)
T ss_dssp             BCTTTCCBCCTT-CEEEEE---------TTEEEEGG
T ss_pred             CcccccccccCC-ceeEEe---------cCEEEEec
Confidence            599999999998 889998         67788854

>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: TRASH domain
domain: Zinc finger MYM-type protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.3  Score=31.81  Aligned_cols=35  Identities=31%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             HhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576           92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ  134 (191)
Q Consensus        92 FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~  134 (191)
                      ---+|..|||.|..|...|--++        --.-|||--|-.
T Consensus        12 ~~v~Ca~Ckk~lqKGQTAyqrkG--------s~~LFCSt~Cl~   46 (49)
T d2dasa1          12 AKITCANCKKPLQKGQTAYQRKG--------SAHLFCSTTCLS   46 (49)
T ss_dssp             SSCBCTTTCCBCCTTSCCEECTT--------CCCEESSHHHHH
T ss_pred             eEeEecccchHHhccchHHhhCC--------CcceeEcchhhc
Confidence            34579999999999999998872        346799999854